Query 005891
Match_columns 671
No_of_seqs 291 out of 735
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 15:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0212 Uncharacterized conser 100.0 2E-151 5E-156 1213.2 54.8 579 20-624 72-657 (675)
2 PF11916 Vac14_Fig4_bd: Vacuol 100.0 8.4E-78 1.8E-82 577.1 20.1 182 368-550 1-182 (182)
3 KOG2023 Nuclear transport rece 100.0 7.1E-37 1.5E-41 334.2 24.8 347 27-376 85-496 (885)
4 KOG0212 Uncharacterized conser 100.0 6.4E-29 1.4E-33 268.8 37.2 470 35-526 3-508 (675)
5 PF12755 Vac14_Fab1_bd: Vacuol 99.8 2.9E-21 6.3E-26 171.0 9.5 82 21-102 16-97 (97)
6 KOG2171 Karyopherin (importin) 99.8 1.8E-17 4E-22 193.2 40.0 414 27-484 74-571 (1075)
7 KOG1242 Protein containing ada 99.7 1.6E-16 3.5E-21 176.2 20.9 304 32-342 174-557 (569)
8 KOG2171 Karyopherin (importin) 99.7 1E-13 2.2E-18 162.3 38.4 363 3-366 348-786 (1075)
9 KOG0915 Uncharacterized conser 99.7 1.3E-14 2.9E-19 171.7 30.9 313 5-365 977-1324(1702)
10 KOG2023 Nuclear transport rece 99.6 2.2E-13 4.7E-18 151.0 30.7 349 22-374 246-765 (885)
11 KOG1242 Protein containing ada 99.5 3.8E-12 8.2E-17 141.8 29.4 364 31-402 95-500 (569)
12 KOG0915 Uncharacterized conser 99.5 1.2E-11 2.5E-16 147.3 31.1 360 25-389 1032-1431(1702)
13 PRK09687 putative lyase; Provi 99.5 6.2E-12 1.3E-16 132.4 24.9 259 27-346 18-279 (280)
14 KOG1241 Karyopherin (importin) 99.5 5.1E-12 1.1E-16 142.3 23.4 334 29-369 87-462 (859)
15 KOG0211 Protein phosphatase 2A 99.4 3.1E-11 6.8E-16 140.4 28.6 346 17-375 301-654 (759)
16 PRK13800 putative oxidoreducta 99.4 1.6E-11 3.4E-16 148.5 26.0 244 33-348 622-866 (897)
17 PF01602 Adaptin_N: Adaptin N 99.3 9.8E-10 2.1E-14 124.8 31.4 349 28-409 75-432 (526)
18 PF01602 Adaptin_N: Adaptin N 99.3 1.1E-09 2.4E-14 124.4 31.9 345 27-402 37-388 (526)
19 KOG1824 TATA-binding protein-i 99.3 3.9E-10 8.4E-15 129.4 27.2 281 43-361 901-1203(1233)
20 KOG1824 TATA-binding protein-i 99.3 4.1E-08 8.9E-13 113.2 42.3 311 17-333 24-489 (1233)
21 PRK13800 putative oxidoreducta 99.3 3.8E-10 8.3E-15 136.5 26.5 245 30-345 650-895 (897)
22 PRK09687 putative lyase; Provi 99.3 1.6E-09 3.4E-14 114.3 24.6 239 75-366 25-265 (280)
23 KOG0213 Splicing factor 3b, su 99.2 1.2E-08 2.6E-13 114.8 29.8 366 27-400 548-969 (1172)
24 KOG1241 Karyopherin (importin) 99.2 9.4E-08 2E-12 108.6 33.6 377 27-420 212-732 (859)
25 PLN03200 cellulose synthase-in 99.1 4.7E-08 1E-12 123.2 32.8 349 35-393 407-772 (2102)
26 KOG0211 Protein phosphatase 2A 99.1 1.3E-07 2.9E-12 110.5 32.4 431 32-497 237-683 (759)
27 PF12348 CLASP_N: CLASP N term 99.1 4.7E-09 1E-13 106.7 18.1 197 33-270 4-210 (228)
28 PTZ00429 beta-adaptin; Provisi 99.1 1.3E-06 2.8E-11 103.0 40.5 317 27-369 135-491 (746)
29 PTZ00429 beta-adaptin; Provisi 99.1 1.1E-06 2.4E-11 103.6 39.3 391 1-424 1-400 (746)
30 PF12755 Vac14_Fab1_bd: Vacuol 99.1 4.6E-10 9.9E-15 99.7 8.5 94 89-184 2-96 (97)
31 PF12348 CLASP_N: CLASP N term 99.1 7.3E-09 1.6E-13 105.3 18.6 191 112-349 5-206 (228)
32 PLN03200 cellulose synthase-in 99.0 4.7E-08 1E-12 123.2 27.3 348 32-389 488-864 (2102)
33 PF10508 Proteasom_PSMB: Prote 99.0 3.2E-07 7E-12 104.5 28.5 333 30-370 75-447 (503)
34 COG5215 KAP95 Karyopherin (imp 99.0 1.3E-06 2.9E-11 96.6 31.5 330 30-368 92-463 (858)
35 KOG0213 Splicing factor 3b, su 98.9 4.8E-06 1E-10 94.5 33.7 327 15-350 704-1066(1172)
36 PF10508 Proteasom_PSMB: Prote 98.9 5.2E-06 1.1E-10 94.7 33.8 258 78-349 43-319 (503)
37 KOG0166 Karyopherin (importin) 98.9 1.8E-06 3.9E-11 96.5 29.1 392 34-483 68-487 (514)
38 PF12460 MMS19_C: RNAPII trans 98.8 5.4E-06 1.2E-10 92.4 31.2 330 27-363 33-413 (415)
39 COG5181 HSH155 U2 snRNP splice 98.8 4.9E-07 1.1E-11 100.6 22.1 364 27-400 353-774 (975)
40 COG5215 KAP95 Karyopherin (imp 98.8 2.1E-05 4.4E-10 87.5 33.7 336 27-368 257-692 (858)
41 KOG1240 Protein kinase contain 98.7 6.1E-06 1.3E-10 97.9 27.0 283 27-337 457-769 (1431)
42 COG5181 HSH155 U2 snRNP splice 98.6 3.8E-05 8.3E-10 85.9 29.0 311 16-348 510-869 (975)
43 KOG4224 Armadillo repeat prote 98.6 2.6E-06 5.6E-11 90.2 17.9 357 30-399 83-486 (550)
44 KOG0166 Karyopherin (importin) 98.5 2.8E-06 6.1E-11 94.9 16.7 360 32-402 109-483 (514)
45 KOG1248 Uncharacterized conser 98.4 0.00046 9.9E-09 82.7 32.4 358 33-392 519-905 (1176)
46 COG1413 FOG: HEAT repeat [Ener 98.4 0.00012 2.5E-09 78.9 25.7 248 32-349 43-304 (335)
47 KOG2259 Uncharacterized conser 98.4 7.6E-05 1.6E-09 84.4 23.8 265 73-365 198-492 (823)
48 KOG1240 Protein kinase contain 98.4 6.6E-05 1.4E-09 89.5 24.3 335 111-471 419-793 (1431)
49 KOG1943 Beta-tubulin folding c 98.4 0.001 2.2E-08 79.1 33.7 401 23-437 332-809 (1133)
50 KOG1058 Vesicle coat complex C 98.4 0.00034 7.4E-09 80.2 28.7 341 5-381 108-458 (948)
51 TIGR02270 conserved hypothetic 98.3 9.3E-05 2E-09 82.1 22.8 242 31-349 53-296 (410)
52 KOG4224 Armadillo repeat prote 98.3 5.4E-05 1.2E-09 80.5 18.8 225 34-267 210-447 (550)
53 KOG1248 Uncharacterized conser 98.2 0.0017 3.7E-08 78.1 32.3 332 25-363 560-914 (1176)
54 KOG1967 DNA repair/transcripti 98.2 5.5E-05 1.2E-09 88.2 18.1 213 49-264 791-1022(1030)
55 KOG1060 Vesicle coat complex A 98.1 0.00073 1.6E-08 77.9 24.9 311 35-368 146-553 (968)
56 KOG2025 Chromosome condensatio 98.0 0.0048 1E-07 70.8 28.8 171 70-261 82-254 (892)
57 KOG1943 Beta-tubulin folding c 98.0 0.029 6.2E-07 67.3 35.8 331 9-347 519-879 (1133)
58 KOG1062 Vesicle coat complex A 98.0 0.0076 1.6E-07 70.1 29.8 239 112-367 105-396 (866)
59 KOG1061 Vesicle coat complex A 98.0 0.0011 2.3E-08 76.8 22.9 334 27-384 116-527 (734)
60 COG5096 Vesicle coat complex, 98.0 0.019 4.2E-07 67.6 33.2 279 41-346 28-309 (757)
61 PF12717 Cnd1: non-SMC mitotic 97.9 0.00059 1.3E-08 67.2 17.5 167 168-344 1-174 (178)
62 cd00020 ARM Armadillo/beta-cat 97.9 5.1E-05 1.1E-09 67.9 8.7 111 32-142 7-119 (120)
63 KOG1060 Vesicle coat complex A 97.9 0.015 3.2E-07 67.6 29.9 330 52-402 52-477 (968)
64 KOG2259 Uncharacterized conser 97.9 0.001 2.3E-08 75.5 20.1 213 34-261 200-470 (823)
65 KOG1059 Vesicle coat complex A 97.8 0.029 6.2E-07 64.8 30.5 203 33-251 145-385 (877)
66 COG1413 FOG: HEAT repeat [Ener 97.8 0.0056 1.2E-07 65.9 24.1 246 30-345 72-331 (335)
67 KOG1061 Vesicle coat complex A 97.8 0.0099 2.1E-07 69.1 26.8 340 33-402 87-434 (734)
68 COG5064 SRP1 Karyopherin (impo 97.8 0.00016 3.5E-09 76.4 11.4 223 33-264 158-396 (526)
69 KOG2274 Predicted importin 9 [ 97.8 0.02 4.4E-07 67.4 28.8 282 24-348 482-779 (1005)
70 KOG1062 Vesicle coat complex A 97.8 0.0059 1.3E-07 70.9 24.2 270 17-324 126-430 (866)
71 KOG2025 Chromosome condensatio 97.7 0.04 8.6E-07 63.6 29.5 167 28-215 81-249 (892)
72 KOG1820 Microtubule-associated 97.7 0.0018 3.9E-08 77.0 19.9 193 72-270 252-447 (815)
73 PF13513 HEAT_EZ: HEAT-like re 97.7 6.4E-05 1.4E-09 59.2 5.4 55 293-347 1-55 (55)
74 PF12460 MMS19_C: RNAPII trans 97.7 0.031 6.8E-07 62.4 28.8 213 111-328 186-414 (415)
75 KOG1059 Vesicle coat complex A 97.7 0.039 8.5E-07 63.7 28.4 228 114-366 144-381 (877)
76 KOG1820 Microtubule-associated 97.7 0.0017 3.8E-08 77.2 18.7 198 27-231 248-449 (815)
77 cd00020 ARM Armadillo/beta-cat 97.7 0.00024 5.3E-09 63.5 9.0 110 74-183 8-119 (120)
78 KOG2032 Uncharacterized conser 97.6 0.014 3E-07 64.9 23.3 194 72-270 180-375 (533)
79 COG5096 Vesicle coat complex, 97.6 0.11 2.5E-06 61.3 32.0 46 321-366 356-404 (757)
80 KOG1967 DNA repair/transcripti 97.5 0.00075 1.6E-08 79.0 12.6 171 6-178 834-1018(1030)
81 TIGR02270 conserved hypothetic 97.5 0.0055 1.2E-07 68.2 18.7 187 33-265 87-295 (410)
82 PF13646 HEAT_2: HEAT repeats; 97.5 0.00054 1.2E-08 58.6 8.2 85 34-139 1-88 (88)
83 PF13513 HEAT_EZ: HEAT-like re 97.5 0.00028 6.2E-09 55.5 5.8 55 128-182 1-55 (55)
84 PF02985 HEAT: HEAT repeat; I 97.4 0.00015 3.2E-09 50.6 3.5 30 33-62 1-30 (31)
85 PF05918 API5: Apoptosis inhib 97.4 0.086 1.9E-06 60.5 26.5 292 73-389 23-349 (556)
86 KOG1020 Sister chromatid cohes 97.4 0.79 1.7E-05 57.3 36.4 280 211-523 791-1086(1692)
87 KOG2956 CLIP-associating prote 97.4 0.0084 1.8E-07 66.2 17.4 154 27-187 324-480 (516)
88 PF13646 HEAT_2: HEAT repeats; 97.3 0.0018 3.9E-08 55.3 10.0 85 116-220 1-87 (88)
89 PF05804 KAP: Kinesin-associat 97.2 0.068 1.5E-06 63.3 24.5 326 34-370 252-634 (708)
90 PF12717 Cnd1: non-SMC mitotic 97.2 0.019 4.1E-07 56.6 16.9 111 250-368 1-113 (178)
91 KOG1991 Nuclear transport rece 97.2 0.96 2.1E-05 54.4 36.0 215 24-247 339-599 (1010)
92 COG5240 SEC21 Vesicle coat com 97.1 0.33 7.1E-06 55.1 27.0 364 32-428 65-449 (898)
93 PLN03076 ARF guanine nucleotid 97.1 0.36 7.8E-06 62.5 30.2 318 49-368 1109-1514(1780)
94 PF08623 TIP120: TATA-binding 97.0 0.0073 1.6E-07 59.0 11.6 127 231-361 3-166 (169)
95 KOG2274 Predicted importin 9 [ 97.0 0.85 1.9E-05 54.4 29.8 348 30-389 88-521 (1005)
96 PF10521 DUF2454: Protein of u 97.0 0.014 3E-07 61.9 14.2 145 24-168 111-278 (282)
97 COG5240 SEC21 Vesicle coat com 97.0 0.12 2.6E-06 58.5 21.6 263 70-348 261-554 (898)
98 PF04826 Arm_2: Armadillo-like 96.9 0.025 5.5E-07 59.0 15.0 183 34-226 14-206 (254)
99 KOG1992 Nuclear export recepto 96.8 0.15 3.3E-06 59.9 21.4 274 49-326 379-686 (960)
100 KOG1058 Vesicle coat complex C 96.8 0.25 5.4E-06 57.6 22.5 362 19-417 47-428 (948)
101 PF04826 Arm_2: Armadillo-like 96.7 0.062 1.3E-06 56.2 15.9 177 33-216 55-253 (254)
102 COG5218 YCG1 Chromosome conden 96.7 0.16 3.4E-06 57.8 19.6 211 30-261 47-261 (885)
103 KOG1020 Sister chromatid cohes 96.6 0.86 1.9E-05 57.0 27.1 152 21-182 805-958 (1692)
104 PF05918 API5: Apoptosis inhib 96.6 0.42 9E-06 55.1 22.9 277 18-315 45-352 (556)
105 PF08167 RIX1: rRNA processing 96.6 0.07 1.5E-06 52.0 14.7 136 109-246 20-164 (165)
106 PLN03076 ARF guanine nucleotid 96.6 0.43 9.4E-06 61.8 25.3 241 29-269 1179-1492(1780)
107 KOG1525 Sister chromatid cohes 96.5 2.3 4.9E-05 53.6 30.5 346 28-389 48-454 (1266)
108 KOG2032 Uncharacterized conser 96.5 0.33 7.2E-06 54.3 21.0 265 29-309 255-532 (533)
109 PF05004 IFRD: Interferon-rela 96.5 0.54 1.2E-05 50.6 22.4 219 31-249 42-285 (309)
110 PF05004 IFRD: Interferon-rela 96.5 0.37 8.1E-06 51.8 20.8 212 75-287 45-281 (309)
111 PF04118 Dopey_N: Dopey, N-ter 96.4 0.13 2.9E-06 55.1 16.9 183 115-346 55-251 (307)
112 KOG1991 Nuclear transport rece 96.4 3.4 7.5E-05 49.9 31.9 355 10-375 476-881 (1010)
113 KOG1993 Nuclear transport rece 96.4 1.9 4.2E-05 50.9 26.9 272 72-354 525-818 (978)
114 COG5064 SRP1 Karyopherin (impo 96.4 0.033 7.1E-07 59.4 11.9 229 115-350 158-399 (526)
115 KOG4653 Uncharacterized conser 96.4 0.22 4.7E-06 58.9 19.4 228 34-269 729-967 (982)
116 KOG0413 Uncharacterized conser 96.4 0.56 1.2E-05 56.1 22.3 85 10-98 556-642 (1529)
117 KOG0392 SNF2 family DNA-depend 96.3 0.043 9.4E-07 66.7 13.5 168 49-269 750-928 (1549)
118 KOG4653 Uncharacterized conser 96.3 0.21 4.6E-06 59.0 18.6 219 122-348 735-963 (982)
119 PF05804 KAP: Kinesin-associat 96.2 1.4 3.1E-05 52.4 25.4 109 31-144 289-400 (708)
120 KOG1992 Nuclear export recepto 96.2 3.6 7.8E-05 48.9 27.6 312 30-348 86-526 (960)
121 PF02985 HEAT: HEAT repeat; I 96.2 0.0081 1.8E-07 41.8 4.1 30 156-185 1-30 (31)
122 KOG2956 CLIP-associating prote 96.1 0.52 1.1E-05 52.6 19.5 188 152-348 284-476 (516)
123 COG5218 YCG1 Chromosome conden 96.1 2.9 6.2E-05 48.0 25.3 165 29-213 88-254 (885)
124 KOG0168 Putative ubiquitin fus 96.1 1.5 3.2E-05 52.2 23.6 211 199-418 170-391 (1051)
125 KOG0889 Histone acetyltransfer 96.1 4.1 8.8E-05 55.3 29.9 436 28-490 1029-1529(3550)
126 KOG1293 Proteins containing ar 96.0 3.2 7E-05 48.2 25.9 313 27-348 89-489 (678)
127 PF13251 DUF4042: Domain of un 96.0 0.094 2E-06 52.1 12.1 140 47-186 1-176 (182)
128 KOG1077 Vesicle coat complex A 95.9 5.1 0.00011 47.0 33.0 393 27-466 106-543 (938)
129 KOG0414 Chromosome condensatio 95.8 7.4 0.00016 48.1 33.8 104 84-188 322-432 (1251)
130 KOG0414 Chromosome condensatio 95.7 0.37 8.1E-06 58.7 17.2 165 194-371 917-1107(1251)
131 PF12719 Cnd3: Nuclear condens 95.6 2.2 4.7E-05 45.5 21.8 129 153-290 24-163 (298)
132 PF10274 ParcG: Parkin co-regu 95.6 0.16 3.6E-06 50.2 12.0 77 272-348 31-108 (183)
133 PF10521 DUF2454: Protein of u 95.6 1.4 3E-05 46.8 19.7 169 129-333 94-278 (282)
134 PF14500 MMS19_N: Dos2-interac 95.5 1.7 3.6E-05 45.8 20.0 203 38-243 5-256 (262)
135 PF05536 Neurochondrin: Neuroc 95.5 6.6 0.00014 45.7 27.0 229 33-270 6-265 (543)
136 KOG0392 SNF2 family DNA-depend 95.5 0.18 3.8E-06 61.7 13.7 236 109-349 72-325 (1549)
137 PF08506 Cse1: Cse1; InterPro 95.5 3.5 7.6E-05 45.5 23.1 211 128-343 110-369 (370)
138 KOG0889 Histone acetyltransfer 95.5 4.9 0.00011 54.6 27.2 297 73-372 984-1334(3550)
139 PF12231 Rif1_N: Rap1-interact 95.3 6 0.00013 43.7 26.3 224 156-387 91-351 (372)
140 KOG1293 Proteins containing ar 95.2 0.75 1.6E-05 53.1 16.8 154 29-184 373-533 (678)
141 PF08569 Mo25: Mo25-like; Int 95.1 0.69 1.5E-05 50.4 15.9 226 155-385 76-332 (335)
142 PF13251 DUF4042: Domain of un 95.1 0.17 3.7E-06 50.2 10.2 139 129-267 1-175 (182)
143 KOG4524 Uncharacterized conser 95.0 12 0.00025 45.6 28.1 217 134-354 568-881 (1014)
144 KOG4413 26S proteasome regulat 95.0 1.3 2.7E-05 47.6 16.9 183 159-348 47-242 (524)
145 PF10274 ParcG: Parkin co-regu 95.0 0.16 3.6E-06 50.2 9.8 114 72-185 37-165 (183)
146 KOG2021 Nuclear mRNA export fa 95.0 11 0.00023 44.8 28.9 346 38-400 92-585 (980)
147 PF13001 Ecm29: Proteasome sta 95.0 9.2 0.0002 44.0 27.5 348 18-392 9-492 (501)
148 KOG1078 Vesicle coat complex C 94.9 1.7 3.7E-05 51.2 18.8 211 37-265 287-531 (865)
149 KOG1993 Nuclear transport rece 94.8 12 0.00026 44.6 27.6 119 227-349 561-688 (978)
150 PF12719 Cnd3: Nuclear condens 94.8 0.49 1.1E-05 50.4 13.7 145 216-365 3-161 (298)
151 COG5098 Chromosome condensatio 94.7 1.3 2.8E-05 51.5 17.0 106 79-185 305-416 (1128)
152 KOG1243 Protein kinase [Genera 94.7 0.21 4.5E-06 58.0 10.9 192 70-270 327-519 (690)
153 PF14500 MMS19_N: Dos2-interac 94.5 6.6 0.00014 41.3 20.8 224 119-349 4-237 (262)
154 KOG4413 26S proteasome regulat 94.3 9.3 0.0002 41.2 23.5 235 30-264 80-331 (524)
155 KOG4535 HEAT and armadillo rep 94.2 4.4 9.5E-05 45.6 19.1 307 42-349 6-462 (728)
156 KOG1243 Protein kinase [Genera 94.2 0.61 1.3E-05 54.3 13.1 137 203-349 261-398 (690)
157 PF08389 Xpo1: Exportin 1-like 94.1 0.65 1.4E-05 43.2 11.3 127 47-179 3-148 (148)
158 PF08623 TIP120: TATA-binding 94.1 0.2 4.4E-06 49.0 7.9 95 150-247 4-116 (169)
159 PF08167 RIX1: rRNA processing 94.0 1.1 2.3E-05 43.7 13.0 136 192-329 21-164 (165)
160 KOG1949 Uncharacterized conser 93.6 11 0.00024 44.4 21.3 141 117-262 177-327 (1005)
161 PF03224 V-ATPase_H_N: V-ATPas 93.5 0.73 1.6E-05 49.4 11.8 152 197-351 106-271 (312)
162 KOG2933 Uncharacterized conser 93.4 1.3 2.9E-05 47.1 13.1 146 110-261 125-272 (334)
163 PF11865 DUF3385: Domain of un 93.3 0.68 1.5E-05 45.0 10.2 117 152-268 7-159 (160)
164 PF12830 Nipped-B_C: Sister ch 93.3 2.6 5.5E-05 42.0 14.5 57 34-94 10-66 (187)
165 KOG1077 Vesicle coat complex A 93.1 23 0.0005 41.8 23.8 283 42-341 158-466 (938)
166 KOG2149 Uncharacterized conser 93.1 0.98 2.1E-05 49.6 11.8 127 35-161 61-188 (393)
167 PF08767 CRM1_C: CRM1 C termin 93.0 13 0.00028 40.3 20.5 221 212-435 43-309 (319)
168 PF08767 CRM1_C: CRM1 C termin 92.9 16 0.00035 39.5 24.5 128 140-268 98-246 (319)
169 PF03378 CAS_CSE1: CAS/CSE pro 92.9 15 0.00034 41.4 21.5 219 26-249 20-254 (435)
170 KOG2062 26S proteasome regulat 92.8 1 2.2E-05 52.7 12.0 76 111-186 621-696 (929)
171 PF14664 RICTOR_N: Rapamycin-i 92.3 22 0.00047 39.4 22.5 231 109-348 20-268 (371)
172 KOG2933 Uncharacterized conser 92.0 3.1 6.6E-05 44.5 13.5 123 278-400 87-214 (334)
173 KOG2160 Armadillo/beta-catenin 92.0 13 0.00027 40.5 18.4 182 3-187 55-243 (342)
174 COG5098 Chromosome condensatio 91.9 1.8 3.9E-05 50.4 12.4 192 195-400 891-1088(1128)
175 COG5656 SXM1 Importin, protein 91.8 34 0.00075 40.7 34.1 383 27-435 454-887 (970)
176 KOG2062 26S proteasome regulat 91.6 3.5 7.5E-05 48.5 14.3 160 74-253 519-681 (929)
177 KOG0567 HEAT repeat-containing 91.5 5.3 0.00011 41.9 14.2 194 31-262 66-276 (289)
178 COG5116 RPN2 26S proteasome re 91.4 1.3 2.9E-05 50.4 10.6 123 33-170 552-677 (926)
179 cd00256 VATPase_H VATPase_H, r 91.4 29 0.00063 39.2 24.8 312 33-348 54-424 (429)
180 PF03378 CAS_CSE1: CAS/CSE pro 91.2 15 0.00033 41.5 19.0 221 144-369 15-255 (435)
181 KOG1949 Uncharacterized conser 90.9 5.7 0.00012 46.6 15.0 144 35-180 177-327 (1005)
182 PF01603 B56: Protein phosphat 90.9 4.8 0.0001 45.1 14.6 220 29-267 129-371 (409)
183 KOG2022 Nuclear transport rece 90.6 48 0.001 40.3 24.0 178 108-289 456-642 (982)
184 PF01347 Vitellogenin_N: Lipop 90.5 7 0.00015 45.8 16.3 149 167-342 447-615 (618)
185 cd08050 TAF6 TATA Binding Prot 90.5 1 2.2E-05 49.3 8.5 74 25-98 251-337 (343)
186 PF10363 DUF2435: Protein of u 90.5 2.1 4.5E-05 37.8 8.9 87 279-368 3-89 (92)
187 PF13001 Ecm29: Proteasome sta 90.3 3.4 7.3E-05 47.5 13.1 164 27-224 314-487 (501)
188 PF03224 V-ATPase_H_N: V-ATPas 90.2 15 0.00033 39.3 17.3 186 200-389 62-273 (312)
189 KOG0803 Predicted E3 ubiquitin 90.2 12 0.00026 47.5 18.2 214 120-334 47-289 (1312)
190 KOG1525 Sister chromatid cohes 90.1 67 0.0014 41.1 34.7 303 19-337 81-441 (1266)
191 KOG0946 ER-Golgi vesicle-tethe 89.6 54 0.0012 39.4 27.5 311 34-344 168-552 (970)
192 PF05536 Neurochondrin: Neuroc 89.4 49 0.0011 38.6 27.7 161 28-188 94-265 (543)
193 PF10363 DUF2435: Protein of u 89.2 1.6 3.5E-05 38.4 7.3 74 157-231 5-78 (92)
194 PF14663 RasGEF_N_2: Rapamycin 89.2 3.6 7.8E-05 37.7 9.8 98 319-422 7-111 (115)
195 KOG2137 Protein kinase [Signal 89.1 17 0.00037 43.0 17.2 146 195-348 348-495 (700)
196 KOG2149 Uncharacterized conser 89.0 4.9 0.00011 44.3 12.2 128 120-247 64-192 (393)
197 KOG0168 Putative ubiquitin fus 89.0 39 0.00084 40.9 19.9 215 94-315 187-420 (1051)
198 PF08064 UME: UME (NUC010) dom 89.0 1.3 2.8E-05 40.1 6.7 61 208-270 27-87 (107)
199 KOG0891 DNA-dependent protein 88.9 65 0.0014 43.7 24.1 197 33-270 6-208 (2341)
200 PF01347 Vitellogenin_N: Lipop 88.8 49 0.0011 38.8 21.6 168 236-416 430-617 (618)
201 PF11865 DUF3385: Domain of un 88.6 1.4 3.1E-05 42.7 7.2 148 190-347 4-155 (160)
202 KOG1517 Guanine nucleotide bin 88.6 7.6 0.00017 47.5 14.2 190 32-224 472-731 (1387)
203 cd08050 TAF6 TATA Binding Prot 88.6 5.9 0.00013 43.3 12.7 143 65-221 174-336 (343)
204 KOG1078 Vesicle coat complex C 87.9 69 0.0015 38.5 27.4 182 234-428 242-428 (865)
205 KOG1822 Uncharacterized conser 87.8 1E+02 0.0022 40.6 23.7 245 35-308 879-1127(2067)
206 KOG2081 Nuclear transport regu 87.7 60 0.0013 37.5 30.8 300 69-385 149-495 (559)
207 KOG2973 Uncharacterized conser 87.6 45 0.00097 36.0 19.0 56 119-175 8-63 (353)
208 KOG1517 Guanine nucleotide bin 87.4 20 0.00044 44.0 16.7 244 94-375 492-756 (1387)
209 KOG2137 Protein kinase [Signal 87.3 7.4 0.00016 45.8 12.9 129 11-146 369-500 (700)
210 cd03561 VHS VHS domain family; 87.2 12 0.00025 35.1 12.2 77 113-189 36-117 (133)
211 COG5116 RPN2 26S proteasome re 86.9 9.4 0.0002 43.9 13.0 151 38-210 522-676 (926)
212 PF00514 Arm: Armadillo/beta-c 86.9 1.1 2.5E-05 32.8 4.2 30 319-348 11-40 (41)
213 cd00256 VATPase_H VATPase_H, r 86.7 58 0.0013 36.8 19.2 148 33-184 102-258 (429)
214 PF12830 Nipped-B_C: Sister ch 86.3 2.8 6.1E-05 41.7 7.9 72 111-186 5-76 (187)
215 KOG0567 HEAT repeat-containing 86.3 13 0.00029 39.0 12.8 164 159-349 71-249 (289)
216 PF12530 DUF3730: Protein of u 86.0 45 0.00097 34.3 22.3 206 116-338 2-221 (234)
217 PF11864 DUF3384: Domain of un 85.8 70 0.0015 36.4 27.7 145 71-224 174-329 (464)
218 KOG3687 Tuberin - Rap/ran-GTPa 85.6 1E+02 0.0022 38.1 24.4 244 164-415 482-805 (1697)
219 KOG1837 Uncharacterized conser 85.5 17 0.00037 46.3 15.4 73 115-187 1539-1614(1621)
220 PF08506 Cse1: Cse1; InterPro 85.2 17 0.00036 40.3 14.0 130 46-179 225-370 (370)
221 PF12231 Rif1_N: Rap1-interact 84.9 68 0.0015 35.4 25.5 218 45-269 59-306 (372)
222 PF08569 Mo25: Mo25-like; Int 84.5 67 0.0015 35.1 22.2 193 28-227 72-285 (335)
223 cd03568 VHS_STAM VHS domain fa 84.3 15 0.00032 35.1 11.5 76 114-189 37-115 (144)
224 smart00802 UME Domain in UVSB 84.3 2.6 5.7E-05 38.2 6.0 60 209-270 28-87 (107)
225 PF00514 Arm: Armadillo/beta-c 84.2 1.4 3E-05 32.3 3.5 29 32-60 12-40 (41)
226 smart00638 LPD_N Lipoprotein N 84.0 92 0.002 36.3 21.3 134 195-346 392-542 (574)
227 PF08064 UME: UME (NUC010) dom 83.8 11 0.00024 34.0 9.9 57 291-349 27-83 (107)
228 PF14631 FancD2: Fanconi anaem 83.8 1.5E+02 0.0033 38.6 23.3 116 228-348 426-541 (1426)
229 KOG2021 Nuclear mRNA export fa 83.5 1.1E+02 0.0024 36.8 32.6 151 192-348 185-363 (980)
230 PF14911 MMS22L_C: S-phase gen 83.2 81 0.0017 35.0 21.4 39 231-269 250-290 (373)
231 KOG1877 Putative transmembrane 83.2 29 0.00063 41.9 15.4 156 134-289 76-265 (819)
232 PF11707 Npa1: Ribosome 60S bi 81.8 82 0.0018 34.1 20.0 93 294-386 129-238 (330)
233 KOG4524 Uncharacterized conser 81.7 1.4E+02 0.0031 36.8 20.3 96 195-290 802-900 (1014)
234 smart00638 LPD_N Lipoprotein N 81.5 81 0.0018 36.7 18.6 131 113-260 392-539 (574)
235 KOG2153 Protein involved in th 80.4 94 0.002 36.6 17.6 229 132-389 303-574 (704)
236 cd03567 VHS_GGA VHS domain fam 80.3 23 0.0005 33.7 11.0 72 118-189 42-121 (139)
237 KOG1837 Uncharacterized conser 80.1 1.6E+02 0.0035 38.2 20.6 210 17-234 1374-1620(1621)
238 PF04118 Dopey_N: Dopey, N-ter 79.7 95 0.0021 33.5 21.6 178 73-257 54-245 (307)
239 KOG3961 Uncharacterized conser 79.4 4.8 0.0001 40.9 6.3 91 148-242 111-204 (262)
240 smart00185 ARM Armadillo/beta- 79.2 2.4 5.3E-05 30.3 3.2 28 33-60 13-40 (41)
241 cd03572 ENTH_epsin_related ENT 78.8 5.6 0.00012 37.0 6.2 73 193-265 35-118 (122)
242 KOG2759 Vacuolar H+-ATPase V1 78.6 1.2E+02 0.0026 34.0 18.1 264 75-348 116-437 (442)
243 KOG1851 Uncharacterized conser 78.5 1E+02 0.0022 39.9 18.2 155 110-269 1522-1681(1710)
244 KOG2549 Transcription initiati 78.1 1.2E+02 0.0026 35.1 17.4 147 66-225 204-370 (576)
245 PF14664 RICTOR_N: Rapamycin-i 76.9 1.3E+02 0.0027 33.4 20.4 152 152-311 22-179 (371)
246 COG5221 DOP1 Dopey and related 76.8 46 0.001 41.2 14.1 125 217-348 126-256 (1618)
247 smart00802 UME Domain in UVSB 76.5 11 0.00024 34.2 7.3 81 162-246 18-105 (107)
248 PF08713 DNA_alkylation: DNA a 76.4 20 0.00044 35.6 10.1 153 37-216 56-209 (213)
249 PF00790 VHS: VHS domain; Int 76.3 32 0.0007 32.4 10.9 77 112-188 40-122 (140)
250 COG5095 TAF6 Transcription ini 76.3 73 0.0016 34.3 14.0 130 64-205 192-337 (450)
251 PF14750 INTS2: Integrator com 76.2 2.2E+02 0.0048 35.9 22.7 69 320-389 149-229 (1049)
252 KOG2549 Transcription initiati 75.9 34 0.00074 39.4 12.3 156 148-348 204-369 (576)
253 PF12074 DUF3554: Domain of un 75.1 38 0.00082 36.7 12.5 156 31-186 60-237 (339)
254 cd03569 VHS_Hrs_Vps27p VHS dom 75.0 65 0.0014 30.6 12.5 74 116-189 43-119 (142)
255 PF14225 MOR2-PAG1_C: Cell mor 74.1 1.2E+02 0.0027 31.9 21.3 219 71-304 5-253 (262)
256 COG5537 IRR1 Cohesin [Cell div 74.0 1.9E+02 0.0041 34.1 17.9 142 116-264 277-420 (740)
257 smart00288 VHS Domain present 73.7 32 0.0007 32.2 10.0 77 113-189 36-116 (133)
258 PF07571 DUF1546: Protein of u 73.3 17 0.00037 32.0 7.5 60 42-101 16-78 (92)
259 KOG2160 Armadillo/beta-catenin 73.2 1.5E+02 0.0032 32.5 21.7 225 34-265 40-281 (342)
260 PF08161 NUC173: NUC173 domain 72.7 75 0.0016 32.0 12.9 35 67-101 35-70 (198)
261 PF09324 DUF1981: Domain of un 72.3 20 0.00043 31.1 7.6 65 29-93 14-79 (86)
262 COG5656 SXM1 Importin, protein 72.2 2.3E+02 0.005 34.2 33.8 263 117-389 463-761 (970)
263 KOG2973 Uncharacterized conser 72.0 1.5E+02 0.0033 32.1 18.3 129 36-170 7-144 (353)
264 KOG0803 Predicted E3 ubiquitin 72.0 1.3E+02 0.0027 38.8 17.1 175 32-209 83-289 (1312)
265 PF12765 Cohesin_HEAT: HEAT re 71.8 6.3 0.00014 29.5 3.8 40 303-344 3-42 (42)
266 PF14631 FancD2: Fanconi anaem 71.5 3.3E+02 0.0071 35.7 27.0 152 149-307 429-583 (1426)
267 KOG3961 Uncharacterized conser 71.2 5.9 0.00013 40.3 4.5 93 273-365 108-204 (262)
268 KOG0946 ER-Golgi vesicle-tethe 70.7 2.5E+02 0.0055 34.1 23.7 195 25-226 19-242 (970)
269 KOG1848 Uncharacterized conser 70.7 3.2E+02 0.0069 35.3 19.5 232 37-268 847-1134(1610)
270 COG5095 TAF6 Transcription ini 70.6 31 0.00067 37.0 9.7 149 148-310 194-361 (450)
271 smart00145 PI3Ka Phosphoinosit 70.2 13 0.00029 36.9 6.9 77 71-160 42-119 (184)
272 PF08713 DNA_alkylation: DNA a 70.0 29 0.00063 34.5 9.5 176 29-234 16-193 (213)
273 smart00185 ARM Armadillo/beta- 69.9 5.7 0.00012 28.3 3.2 29 320-348 12-40 (41)
274 KOG4199 Uncharacterized conser 68.7 1.5E+02 0.0033 32.5 14.5 32 157-188 285-317 (461)
275 PF08389 Xpo1: Exportin 1-like 68.1 10 0.00023 35.0 5.4 125 129-260 3-147 (148)
276 PF09324 DUF1981: Domain of un 67.3 22 0.00048 30.8 6.9 67 114-180 17-84 (86)
277 PF11864 DUF3384: Domain of un 67.1 2.3E+02 0.005 32.3 25.0 277 45-342 3-323 (464)
278 KOG1848 Uncharacterized conser 67.0 72 0.0016 40.7 13.1 118 71-188 995-1136(1610)
279 KOG2011 Sister chromatid cohes 65.3 3.6E+02 0.0079 33.9 26.5 293 120-422 84-436 (1048)
280 cd03565 VHS_Tom1 VHS domain fa 64.9 99 0.0022 29.3 11.4 75 116-190 40-121 (141)
281 cd00197 VHS_ENTH_ANTH VHS, ENT 64.8 84 0.0018 28.2 10.5 73 276-348 34-114 (115)
282 PF12765 Cohesin_HEAT: HEAT re 64.7 6.1 0.00013 29.6 2.4 25 31-55 17-41 (42)
283 PF12530 DUF3730: Protein of u 64.2 1.8E+02 0.0038 29.9 22.4 200 34-251 2-217 (234)
284 KOG4500 Rho/Rac GTPase guanine 64.1 2.6E+02 0.0056 31.8 23.0 116 235-353 313-435 (604)
285 PF12074 DUF3554: Domain of un 62.7 2.3E+02 0.0049 30.6 19.4 107 130-246 3-112 (339)
286 PF12612 TFCD_C: Tubulin foldi 62.7 32 0.00069 34.3 8.0 135 28-206 3-137 (193)
287 KOG2199 Signal transducing ada 61.8 1.1E+02 0.0023 34.1 12.0 90 114-203 45-138 (462)
288 KOG4535 HEAT and armadillo rep 61.8 3E+02 0.0065 31.7 21.2 339 18-367 281-657 (728)
289 PF12397 U3snoRNP10: U3 small 61.8 82 0.0018 28.6 10.0 70 277-351 4-76 (121)
290 cd03568 VHS_STAM VHS domain fa 61.5 72 0.0016 30.5 9.7 72 277-348 35-109 (144)
291 PF12333 Ipi1_N: Rix1 complex 61.4 25 0.00054 31.5 6.3 61 25-85 4-65 (102)
292 PF04078 Rcd1: Cell differenti 60.8 61 0.0013 34.1 9.7 146 210-388 110-261 (262)
293 PF11698 V-ATPase_H_C: V-ATPas 60.6 17 0.00036 33.7 5.0 70 155-224 43-114 (119)
294 cd07064 AlkD_like_1 A new stru 60.1 1.1E+02 0.0024 30.9 11.4 80 150-235 110-189 (208)
295 cd00872 PI3Ka_I Phosphoinositi 60.0 29 0.00064 34.2 7.0 45 112-161 71-115 (171)
296 cd03567 VHS_GGA VHS domain fam 59.6 1.6E+02 0.0035 27.9 12.9 71 278-348 37-115 (139)
297 cd00864 PI3Ka Phosphoinositide 59.6 36 0.00078 32.8 7.4 44 112-160 71-114 (152)
298 KOG0413 Uncharacterized conser 59.2 4.5E+02 0.0097 32.9 24.2 182 158-346 475-682 (1529)
299 KOG1789 Endocytosis protein RM 59.2 4.7E+02 0.01 33.2 23.9 120 50-184 1743-1883(2235)
300 KOG2085 Serine/threonine prote 57.9 3.2E+02 0.0069 30.8 15.6 235 3-267 151-415 (457)
301 PF11698 V-ATPase_H_C: V-ATPas 57.6 46 0.00099 30.9 7.3 71 278-348 42-114 (119)
302 PF12333 Ipi1_N: Rix1 complex 57.1 56 0.0012 29.2 7.7 56 112-167 9-65 (102)
303 cd06561 AlkD_like A new struct 56.9 2E+02 0.0043 28.1 15.2 112 109-236 70-181 (197)
304 COG5231 VMA13 Vacuolar H+-ATPa 56.6 3E+02 0.0065 30.1 16.7 69 279-347 356-426 (432)
305 PF14225 MOR2-PAG1_C: Cell mor 56.5 2.6E+02 0.0057 29.4 13.8 182 30-229 62-258 (262)
306 cd03561 VHS VHS domain family; 56.5 1.1E+02 0.0023 28.6 9.9 72 277-348 35-111 (133)
307 PF14745 WASH-7_N: WASH comple 56.2 1.2E+02 0.0026 35.6 12.4 93 377-515 128-239 (567)
308 KOG0929 Guanine nucleotide exc 53.7 5E+02 0.011 34.1 17.5 248 32-288 1037-1320(1514)
309 KOG0891 DNA-dependent protein 53.6 7.9E+02 0.017 34.1 27.8 77 112-188 132-208 (2341)
310 PF00790 VHS: VHS domain; Int 53.3 1.1E+02 0.0023 28.8 9.5 72 277-348 40-117 (140)
311 COG5101 CRM1 Importin beta-rel 53.3 4.6E+02 0.01 31.3 16.9 204 235-461 134-373 (1053)
312 KOG3036 Protein involved in ce 53.2 1.6E+02 0.0035 30.9 11.1 55 208-262 137-193 (293)
313 smart00567 EZ_HEAT E-Z type HE 52.9 14 0.00031 24.9 2.5 29 46-84 1-29 (30)
314 cd07064 AlkD_like_1 A new stru 52.9 2.6E+02 0.0056 28.2 17.2 179 150-358 7-189 (208)
315 KOG1822 Uncharacterized conser 51.7 7.5E+02 0.016 33.3 28.9 223 122-348 884-1126(2067)
316 KOG0890 Protein kinase of the 51.4 8.3E+02 0.018 33.6 25.4 202 147-348 866-1112(2382)
317 cd03569 VHS_Hrs_Vps27p VHS dom 50.9 1.5E+02 0.0032 28.2 10.0 72 277-348 39-113 (142)
318 PF03130 HEAT_PBS: PBS lyase H 50.3 9 0.00019 25.7 1.1 27 48-84 1-27 (27)
319 cd00870 PI3Ka_III Phosphoinosi 49.7 56 0.0012 32.0 7.0 45 112-161 78-122 (166)
320 PF11919 DUF3437: Domain of un 49.2 33 0.00072 30.2 4.8 55 131-186 6-60 (90)
321 KOG2011 Sister chromatid cohes 48.9 2.9E+02 0.0063 34.7 14.1 148 66-220 279-430 (1048)
322 PF04388 Hamartin: Hamartin pr 48.4 2.2E+02 0.0048 34.2 13.0 69 278-348 69-139 (668)
323 PF12783 Sec7_N: Guanine nucle 48.0 1.6E+02 0.0034 28.4 9.9 72 292-363 35-121 (168)
324 PRK12323 DNA polymerase III su 47.5 1.2E+02 0.0026 36.3 10.4 42 278-319 186-227 (700)
325 cd00197 VHS_ENTH_ANTH VHS, ENT 47.3 1.7E+02 0.0037 26.2 9.5 75 20-94 25-107 (115)
326 PF04063 DUF383: Domain of unk 46.6 2.8E+02 0.006 27.9 11.6 122 40-185 3-133 (192)
327 cd03572 ENTH_epsin_related ENT 46.2 82 0.0018 29.4 7.1 41 318-358 36-77 (122)
328 KOG1566 Conserved protein Mo25 45.7 4.3E+02 0.0094 28.8 15.9 219 159-385 83-335 (342)
329 PF01603 B56: Protein phosphat 45.7 4.8E+02 0.01 29.2 21.8 234 73-316 133-378 (409)
330 PF02847 MA3: MA3 domain; Int 45.7 2.1E+02 0.0047 25.2 10.3 75 27-101 31-108 (113)
331 PF04510 DUF577: Family of unk 44.0 3.3E+02 0.0073 27.0 12.5 127 31-168 2-147 (174)
332 PF12726 SEN1_N: SEN1 N termin 43.9 6.6E+02 0.014 30.4 31.5 154 233-389 437-612 (727)
333 smart00288 VHS Domain present 43.7 2E+02 0.0043 26.9 9.5 72 277-348 35-110 (133)
334 PF06371 Drf_GBD: Diaphanous G 42.8 26 0.00056 34.1 3.6 94 129-224 91-186 (187)
335 PF14228 MOR2-PAG1_mid: Cell m 41.8 8.7E+02 0.019 31.1 22.7 81 173-264 488-570 (1120)
336 PF04499 SAPS: SIT4 phosphatas 41.3 3.1E+02 0.0067 31.5 12.3 74 95-188 22-96 (475)
337 PF11701 UNC45-central: Myosin 40.5 76 0.0016 30.6 6.3 133 241-379 7-153 (157)
338 cd00871 PI4Ka Phosphoinositide 40.3 36 0.00077 33.7 4.0 34 125-161 82-115 (175)
339 PF00613 PI3Ka: Phosphoinositi 40.1 35 0.00075 34.0 4.0 78 71-161 43-121 (184)
340 PF11701 UNC45-central: Myosin 39.6 2.6E+02 0.0056 26.8 9.9 131 84-219 16-153 (157)
341 PF06371 Drf_GBD: Diaphanous G 39.4 2.7E+02 0.0059 26.8 10.3 58 126-183 128-186 (187)
342 KOG2256 Predicted protein invo 39.4 7.3E+02 0.016 29.6 16.5 189 312-513 233-449 (661)
343 KOG2081 Nuclear transport regu 39.4 6.9E+02 0.015 29.2 28.4 143 169-323 366-510 (559)
344 PF01417 ENTH: ENTH domain; I 39.4 1.3E+02 0.0029 27.5 7.6 73 192-264 35-119 (125)
345 cd00869 PI3Ka_II Phosphoinosit 38.7 39 0.00084 33.3 4.0 33 126-161 83-115 (169)
346 PF11935 DUF3453: Domain of un 38.7 4.6E+02 0.01 27.0 14.9 178 246-432 2-225 (239)
347 PF11264 ThylakoidFormat: Thyl 38.4 2.5E+02 0.0054 28.9 9.8 104 70-173 67-181 (216)
348 PRK14957 DNA polymerase III su 38.3 2.9E+02 0.0063 32.4 11.6 46 277-322 180-225 (546)
349 PF04388 Hamartin: Hamartin pr 37.5 5.3E+02 0.011 31.0 13.9 156 157-330 6-162 (668)
350 KOG2122 Beta-catenin-binding p 37.3 1.1E+03 0.025 31.2 20.7 70 320-389 530-605 (2195)
351 PF12054 DUF3535: Domain of un 35.6 7.1E+02 0.015 28.3 19.1 271 45-322 100-438 (441)
352 PF07539 DRIM: Down-regulated 35.4 3.3E+02 0.0071 25.9 9.6 88 68-164 12-101 (141)
353 PF14677 FANCI_S3: FANCI solen 35.1 2.1E+02 0.0045 29.4 8.8 144 97-243 63-219 (219)
354 PF12783 Sec7_N: Guanine nucle 34.8 4.2E+02 0.009 25.4 11.6 68 159-226 77-147 (168)
355 KOG0905 Phosphoinositide 3-kin 34.3 2.1E+02 0.0045 36.3 9.7 51 208-261 902-952 (1639)
356 KOG2213 Apoptosis inhibitor 5/ 33.7 7.3E+02 0.016 27.9 17.6 242 37-329 13-288 (460)
357 KOG1851 Uncharacterized conser 33.3 1.3E+03 0.028 30.6 25.8 71 277-348 1524-1597(1710)
358 smart00145 PI3Ka Phosphoinosit 33.1 76 0.0016 31.6 5.1 47 191-242 73-119 (184)
359 COG5657 CSE1 CAS/CSE protein i 33.1 1E+03 0.023 29.5 27.9 175 170-347 508-688 (947)
360 KOG2085 Serine/threonine prote 32.9 7.7E+02 0.017 27.9 20.0 86 279-368 341-430 (457)
361 PRK07003 DNA polymerase III su 32.7 3.3E+02 0.0072 33.3 11.0 43 277-319 180-222 (830)
362 KOG1877 Putative transmembrane 32.4 87 0.0019 38.0 6.2 138 193-330 49-203 (819)
363 PF04510 DUF577: Family of unk 32.0 5.2E+02 0.011 25.7 11.6 48 297-346 60-108 (174)
364 PRK07764 DNA polymerase III su 32.0 3E+02 0.0064 34.0 10.8 45 278-322 182-226 (824)
365 PF12612 TFCD_C: Tubulin foldi 31.9 5.1E+02 0.011 25.6 13.3 128 235-370 5-141 (193)
366 KOG4199 Uncharacterized conser 31.8 5.1E+02 0.011 28.6 11.2 58 126-183 386-443 (461)
367 PF04499 SAPS: SIT4 phosphatas 31.6 4.7E+02 0.01 30.1 11.8 109 192-313 30-153 (475)
368 PF12397 U3snoRNP10: U3 small 30.6 4.1E+02 0.0088 24.0 10.4 70 316-387 2-76 (121)
369 PRK07994 DNA polymerase III su 29.8 2.6E+02 0.0056 33.4 9.6 43 277-319 180-222 (647)
370 PF07531 TAFH: NHR1 homology t 29.5 1.5E+02 0.0033 26.5 5.8 73 154-249 7-80 (96)
371 PF11919 DUF3437: Domain of un 29.2 1.2E+02 0.0026 26.7 5.2 57 213-270 6-62 (90)
372 KOG1087 Cytosolic sorting prot 29.1 2E+02 0.0044 32.9 8.2 76 18-93 24-103 (470)
373 cd03565 VHS_Tom1 VHS domain fa 29.0 4.3E+02 0.0094 25.0 9.3 72 277-348 36-114 (141)
374 PRK14965 DNA polymerase III su 28.2 2.5E+02 0.0055 33.0 9.1 45 277-321 180-224 (576)
375 PF04078 Rcd1: Cell differenti 27.5 7.6E+02 0.016 26.1 11.6 58 292-349 109-168 (262)
376 PF08161 NUC173: NUC173 domain 27.3 3.9E+02 0.0086 26.9 9.2 59 129-187 15-73 (198)
377 PF06685 DUF1186: Protein of u 27.2 7.4E+02 0.016 26.0 12.9 28 157-184 113-142 (249)
378 KOG4552 Vitamin-D-receptor int 27.0 5E+02 0.011 26.5 9.4 111 320-460 22-146 (272)
379 PRK14969 DNA polymerase III su 26.8 3.6E+02 0.0078 31.4 10.0 46 277-322 180-225 (527)
380 PF07834 RanGAP1_C: RanGAP1 C- 26.5 3.3E+02 0.0073 27.2 8.2 88 25-124 30-118 (183)
381 COG2812 DnaX DNA polymerase II 26.4 6E+02 0.013 29.6 11.4 72 251-322 126-225 (515)
382 cd00872 PI3Ka_I Phosphoinositi 26.1 99 0.0021 30.5 4.5 48 192-244 69-116 (171)
383 KOG0905 Phosphoinositide 3-kin 26.0 1.2E+02 0.0025 38.4 5.8 33 126-161 902-934 (1639)
384 COG5231 VMA13 Vacuolar H+-ATPa 25.6 1.9E+02 0.0041 31.6 6.7 88 80-184 329-428 (432)
385 PF14663 RasGEF_N_2: Rapamycin 25.2 1.3E+02 0.0028 27.5 4.9 34 28-61 4-37 (115)
386 PF01417 ENTH: ENTH domain; I 24.3 2.4E+02 0.0052 25.8 6.5 74 275-349 35-121 (125)
387 cd00864 PI3Ka Phosphoinositide 24.2 1.4E+02 0.0029 28.8 5.0 46 192-242 69-114 (152)
388 PRK08691 DNA polymerase III su 23.9 3.9E+02 0.0084 32.3 9.6 28 339-366 263-290 (709)
389 PLN03060 inositol phosphatase- 23.7 6.8E+02 0.015 25.6 10.0 95 70-169 70-172 (206)
390 PF13925 Katanin_con80: con80 23.2 2.2E+02 0.0047 27.7 6.3 45 273-317 60-107 (164)
391 KOG2020 Nuclear transport rece 23.1 1.2E+03 0.025 29.8 13.7 150 32-185 91-259 (1041)
392 PF11707 Npa1: Ribosome 60S bi 23.0 9.7E+02 0.021 25.8 19.6 202 116-323 58-314 (330)
393 KOG3036 Protein involved in ce 22.9 9.3E+02 0.02 25.5 13.2 61 290-350 136-198 (293)
394 KOG1926 Predicted regulator of 22.9 1.5E+03 0.032 28.9 14.2 211 30-247 31-252 (1129)
395 PHA01351 putative minor struct 22.9 1.1E+03 0.023 28.7 12.3 160 53-225 30-243 (1070)
396 cd00870 PI3Ka_III Phosphoinosi 22.8 1.3E+02 0.0028 29.5 4.6 48 192-244 76-123 (166)
397 smart00544 MA3 Domain in DAP-5 22.6 5.3E+02 0.012 22.7 8.9 74 28-101 32-108 (113)
398 PF03542 Tuberin: Tuberin; In 22.5 7.5E+02 0.016 27.3 10.9 175 109-291 136-331 (356)
399 KOG2199 Signal transducing ada 22.4 2.9E+02 0.0063 30.9 7.4 55 261-315 26-81 (462)
400 PF14961 BROMI: Broad-minded p 22.4 1.9E+02 0.004 36.8 6.6 53 43-98 173-228 (1296)
401 cd08812 CARD_RIG-I_like Caspas 21.9 3.9E+02 0.0084 23.2 7.0 55 421-475 32-86 (88)
402 PF12726 SEN1_N: SEN1 N termin 21.7 1.5E+03 0.032 27.4 36.2 187 72-260 119-340 (727)
403 KOG2005 26S proteasome regulat 21.6 1.5E+03 0.032 27.4 15.2 87 75-173 417-505 (878)
404 KOG2223 Uncharacterized conser 21.5 3.7E+02 0.0081 30.5 8.1 70 338-409 491-564 (586)
405 COG5234 CIN1 Beta-tubulin fold 21.4 2.5E+02 0.0055 33.7 7.1 39 26-64 240-278 (993)
406 KOG1070 rRNA processing protei 20.9 9.2E+02 0.02 31.6 12.0 112 336-452 1477-1629(1710)
407 PF12054 DUF3535: Domain of un 20.3 1.3E+03 0.028 26.2 19.1 80 167-249 99-180 (441)
408 PRK13266 Thf1-like protein; Re 20.0 7.2E+02 0.016 25.7 9.4 77 70-146 72-157 (225)
No 1
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-151 Score=1213.18 Aligned_cols=579 Identities=53% Similarity=0.855 Sum_probs=546.0
Q ss_pred HHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q 005891 20 ADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRL 99 (671)
Q Consensus 20 ~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~Ldrl 99 (671)
.++|.+...|++.|+|||+.||+|+|.+|||||||++|||+|+++|+++.|||+||++||++.+|+|++||+||+++||+
T Consensus 72 iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRL 151 (675)
T KOG0212|consen 72 IALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRL 151 (675)
T ss_pred HHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHH
Confidence 34677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccc-hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHH
Q 005891 100 VKDIVTESD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (671)
Q Consensus 100 lKdIv~e~~-~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~ 178 (671)
+||||++.+ +|+++.|||+|.++||+.||.+|+|+++||++++++|+.+|+.|+|+|++|||+||+|++.+||..+..+
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~ 231 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTL 231 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999987 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcH-hHHHH
Q 005891 179 LWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE-KIRVV 256 (671)
Q Consensus 179 L~~ll~~I~~~~~~-d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~-eIR~~ 256 (671)
|++|+++|.++|.. |+++++++++.+++++++++|+.|+.||.+|++++|.++++|+++++.++|||++|.++ .+++.
T Consensus 232 l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~ 311 (675)
T KOG0212|consen 232 LSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEY 311 (675)
T ss_pred HHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHH
Confidence 99999999999987 99999999999999999999999999999999999999999999999999999999988 69999
Q ss_pred HHHHHHHHHHhcCCC--CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCH
Q 005891 257 ARETNEELRAIKADP--ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD 334 (671)
Q Consensus 257 A~~~n~~L~~~i~~~--~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~ 334 (671)
|..+|+.+++.+.+. .+++|++++++++.+++.++.++||++||+|+.+++.+.|+++..|.+.+|++||++|+|+++
T Consensus 312 a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh
Confidence 999999999988754 334999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChhHHHHH
Q 005891 335 EVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTM 412 (671)
Q Consensus 335 eV~~~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~m 412 (671)
+|+..++.+++.|+. +..++.+|+..||++|+.|+++++.||++||||||..|+||+||+.+|+||+.|+|++||++|
T Consensus 392 ~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~nl~FAstM 471 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREENLKFASTM 471 (675)
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhccccchHHHHH
Confidence 999999999999994 455789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHH
Q 005891 413 VQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQ 492 (671)
Q Consensus 413 Vq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~~~~e~~~~~l~q 492 (671)
||+||+||+||+||++||++||+ +.+.+++++|+|||++|||||||++|||||||||+|||++++.||++|+||++|+|
T Consensus 472 V~~Ln~iLlTStELf~LR~~Lk~-lsn~es~~lF~cLy~sWchnPva~~SLClLtQnYqhA~~liq~fa~~eitvd~L~e 550 (675)
T KOG0212|consen 472 VQALNTILLTSTELFQLRNKLKD-LSNEESQNLFCCLYRSWCHNPVATLSLCLLTQNYQHAYDLIQLFADVEITVDFLVE 550 (675)
T ss_pred HHHHHhhhcccHHHHHHHHHHHh-ccChhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 99999999999999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhhHHHHHhhcCCCCChhHHHHHHHHhhhccCcchhhHHHHhhhcccCCcccccccccccCCCCCccccc
Q 005891 493 LDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQIL 572 (671)
Q Consensus 493 ~d~LvqllEspif~~lRl~Ll~~~~~p~L~k~L~gllmlLPq~s~af~~L~~RL~~v~~~~~~~~~~~~~~~~~~~~~~~ 572 (671)
+||||||+|||||||||||||||.+||||.|||||||||||| |+||.||++||+|||++...... +...+.|++
T Consensus 551 lDKLVqLiEsPIFtylRLqLLe~~~~pyL~kaLyGlLMLLPQ-S~AF~tL~~RLqcvp~~~~~~~~--~~~~~~p~s--- 624 (675)
T KOG0212|consen 551 LDKLVQLIESPIFTYLRLQLLEPKNNPYLHKALYGLLMLLPQ-SSAFQTLRHRLQCVPNPVGNQTI--DAREAVPFS--- 624 (675)
T ss_pred HHHHHHHHhcchHHHHHHHHhccccCchHHHHHHHHHHHccc-HHHHHHHHHHHhcCCchhhccch--hhhccCCcc---
Confidence 999999999999999999999999999999999999999999 99999999999999999653211 111111111
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhHHHhhh
Q 005891 573 HSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQL 624 (671)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~~~q~~~~~~~~~~~~~ 624 (671)
.+.+..+|+|++|++||++||++|+..+ .+|..
T Consensus 625 ------------------~~~~~~~idf~~LlqhFkavq~~h~~~r-~~R~~ 657 (675)
T KOG0212|consen 625 ------------------QKADSPGIDFAELLQHFKAVQNKHLEQR-EQRSG 657 (675)
T ss_pred ------------------cccCCCCCChHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 1334478999999999999999998844 34443
No 2
>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 211 to 243 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=8.4e-78 Score=577.08 Aligned_cols=182 Identities=62% Similarity=1.045 Sum_probs=177.6
Q ss_pred cchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHH
Q 005891 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFV 447 (671)
Q Consensus 368 d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~ 447 (671)
|+++|++||++||||||..+|||+||+++|++|++++|++||++|||+||+||+||+|+++||++||+...+++++++|.
T Consensus 1 D~~LL~~Rg~~IIRqLC~~L~~E~iy~~la~iL~~~~dl~Fas~mVq~LN~iLLTs~EL~~LR~~Lr~~~~~~~~~~lF~ 80 (182)
T PF11916_consen 1 DRKLLERRGSFIIRQLCVLLNAERIYRTLASILESEEDLEFASMMVQTLNNILLTSPELFDLRKKLRNLDTDEEGQSLFS 80 (182)
T ss_pred CHhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcchHHHHHHHHHHhccccchHHhHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999998434556999999
Q ss_pred HHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHhhcCCCCChhHHHHHHH
Q 005891 448 SLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYG 527 (671)
Q Consensus 448 ~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~~~~e~~~~~l~q~d~LvqllEspif~~lRl~Ll~~~~~p~L~k~L~g 527 (671)
+||+|||||||||+|||||+|||||||++|+.||++|+|+++|+|||+||||+|||||+|||||||||++||||+|||||
T Consensus 81 ~Ly~sWchNpva~lSLcLl~q~Y~~A~~li~~~~~~e~~~~~L~qiD~LVqLlESPiF~~lRlqLLep~~~p~L~k~Lyg 160 (182)
T PF11916_consen 81 TLYRSWCHNPVATLSLCLLAQAYEHAYNLIQSFAELEVTVDFLVQIDKLVQLLESPIFTYLRLQLLEPEKYPYLYKCLYG 160 (182)
T ss_pred HHHHHHhcCHHHHHHHHHHHhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhhhhHHHHHHHhCCcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCcchhhHHHHhhhcccC
Q 005891 528 LLMLLPQQSAAFKILRTRLKTVP 550 (671)
Q Consensus 528 llmlLPq~s~af~~L~~RL~~v~ 550 (671)
|||+||| |+||++|++||+|||
T Consensus 161 LlMlLPQ-s~af~~L~~RL~~vp 182 (182)
T PF11916_consen 161 LLMLLPQ-SSAFNTLRNRLQSVP 182 (182)
T ss_pred HHHHCCC-hHHHHHHHhhcccCC
Confidence 9999999 999999999999998
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-37 Score=334.16 Aligned_cols=347 Identities=17% Similarity=0.225 Sum_probs=295.4
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
.+-+++|...++++++|+++-+|.+.+..+..|+ ..+.+..|++++|.|+.++..++.+..+|| .+|.+.++|...
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~---s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~ 161 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIA---STGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ 161 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeee---cccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH
Confidence 3568889999999999999999999999888876 445556789999999999999999999999 899999998776
Q ss_pred cc----chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 005891 106 ES----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (671)
Q Consensus 106 e~----~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ 181 (671)
.- ...+++.+||.+.+.+...+|.+|..++.+++.+.-+-...+..+++.|+++||.+.+|.+++||+.+|.++.-
T Consensus 162 ~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~ 241 (885)
T KOG2023|consen 162 FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVF 241 (885)
T ss_pred HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 42 35789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--cCcCcccchHhHHHHHhhhhcCCcHhHHHHH--
Q 005891 182 FLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPYYADILGAILPCISDKEEKIRVVA-- 257 (671)
Q Consensus 182 ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l--~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A-- 257 (671)
+++.-..+...++++||++|++.+++.|+.+.++|++....+++- +++.+.||+++++|+++..|.|++.++--..
T Consensus 242 Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ 321 (885)
T KOG2023|consen 242 LLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNN 321 (885)
T ss_pred HHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCc
Confidence 998776666678999999999999999999999999955566663 5677899999999999999998765443322
Q ss_pred -----------------HHHHHHHHHh--cCC--------CC---CCCC--------------------hHhHHHHHHHh
Q 005891 258 -----------------RETNEELRAI--KAD--------PA---DGFD--------------------VGPILSIATRQ 287 (671)
Q Consensus 258 -----------------~~~n~~L~~~--i~~--------~~---~~~d--------------------l~~il~~L~~~ 287 (671)
.+....-..- -.+ +. ..|+ ++.++|.|.+.
T Consensus 322 eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 322 EEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEH 401 (885)
T ss_pred cccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111000000 000 00 0133 24556778899
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh------hccchHHHHHHHH
Q 005891 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA------KDLQHFRQLVVFL 361 (671)
Q Consensus 288 L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is------~~~~~F~~fm~~L 361 (671)
|.++.|..|+++...+++++++|.+++.+|++.++|+++.+|+|+.|-||+++||+|+|++ ++++||+++|.+|
T Consensus 402 L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 3679999999999
Q ss_pred HhhccccchhhhhHH
Q 005891 362 VHNFRVDNSLLEKRG 376 (671)
Q Consensus 362 L~lf~~d~~lLe~Rg 376 (671)
+++.-+.+|-+++.|
T Consensus 482 l~~llD~NK~VQEAA 496 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAA 496 (885)
T ss_pred HHHHhcccHHHHHHH
Confidence 999987777777553
No 4
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=6.4e-29 Score=268.75 Aligned_cols=470 Identities=18% Similarity=0.272 Sum_probs=370.3
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhc-chhhhhHHHHHHHHH-HhhcCCchHHHHHH-HHHHHHHHHhhcccchhh
Q 005891 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFFNQIFDALC-KLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (671)
Q Consensus 35 ~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~-~~il~~f~eIf~~L~-kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~ 111 (671)
..+.++++|+-++.|++|+-.+.+++|.+- ..-..++..+++.|+ ..+..++.+.|+|+ ..+.+..-.+..+.+. .
T Consensus 3 ~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y 81 (675)
T KOG0212|consen 3 ASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-Y 81 (675)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-H
Confidence 457889999999999999999999998754 344567788999888 56677888888887 5665554444444434 6
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC-
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP- 190 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~- 190 (671)
++.++|++..++.|++.++|+++|+.++++.++...+++.|++++++.|+++..|++..||.+| +.++++.++|....
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA 160 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999997 88999999997543
Q ss_pred -CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcC
Q 005891 191 -SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (671)
Q Consensus 191 -~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (671)
.++++.+||.+-+++...++.+|...+.||..+...++-+++.|+|.++++++.+++|+.++||.++..+..++++.+.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHH-HHHHHH----HHH
Q 005891 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE-VVLLVL----EVH 344 (671)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~e-V~~~~l----~lL 344 (671)
..+..+|++++++++..++.+++..++..|+.|+..+....|.++.+++++++..+|++++|..+. +...+- .++
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999999999999999999999999998874 433322 244
Q ss_pred HHHhh----ccchHHHHHHHHHhhccccchhhhhHHHH--HHHHHhccCChH------HHHHHHHHhhcccCChhHHHHH
Q 005891 345 ACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGAL--IIRRLCVLLDAE------RVYRELSTILEGEADLDFACTM 412 (671)
Q Consensus 345 a~Is~----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~--IIR~Lc~~L~~E------~Iy~~la~iL~~~~dl~F~~~m 412 (671)
+..++ .+-.|.++|..|.+.+.+|+. ++|.+. ||++|....++| .||.++-.-|++..| +.+...
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~~--~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd-~vvl~~ 397 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDDRE--ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD-EVVLLA 397 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh-HHHHHH
Confidence 44442 234577999999999999876 777766 999999998875 788888888877555 344444
Q ss_pred HHHHHHHhccchhHHHHHHHHHhccC---------CcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 005891 413 VQALNLILLTSSELSELRDLLKKSLV---------NPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEE 483 (671)
Q Consensus 413 Vq~Ln~iLLTs~El~~lR~~L~~~l~---------~~~~~~lF~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~~~~ 483 (671)
...|..|--. ++-..+|+-|...+. ..+|--+-. =||++-.+ |+-|..+..+=+-
T Consensus 398 L~lla~i~~s-~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIR--------------qlC~lL~a-E~IYr~~a~ILe~ 461 (675)
T KOG0212|consen 398 LSLLASICSS-SNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIR--------------QLCLLLNA-ERIYRSIADILER 461 (675)
T ss_pred HHHHHHHhcC-cccccHHHHHHHHHHHHhhhhHHHHhhhhHHHH--------------HHHHHhCH-HHHHHHHHHHHhc
Confidence 5555544433 233244555544210 111211111 24655433 3344333333222
Q ss_pred ccchH---HHHHHHHHHHHhhchhhHHHHHhhcC--CCCChhHHHHHH
Q 005891 484 DLNVK---FLVQLDKLIRLLETPIFAYLRLQLLE--PGRYTWLLKALY 526 (671)
Q Consensus 484 e~~~~---~l~q~d~LvqllEspif~~lRl~Ll~--~~~~p~L~k~L~ 526 (671)
|=+.+ ..||+=..+ |+-||-.-.||=+|=. -++-..||.|||
T Consensus 462 e~nl~FAstMV~~Ln~i-LlTStELf~LR~~Lk~lsn~es~~lF~cLy 508 (675)
T KOG0212|consen 462 EENLKFASTMVQALNTI-LLTSTELFQLRNKLKDLSNEESQNLFCCLY 508 (675)
T ss_pred cccchHHHHHHHHHHhh-hcccHHHHHHHHHHHhccChhhhHHHHHHH
Confidence 33322 333333332 6678888889987763 667788999999
No 5
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.85 E-value=2.9e-21 Score=171.01 Aligned_cols=82 Identities=67% Similarity=1.051 Sum_probs=78.6
Q ss_pred HhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 005891 21 DLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLV 100 (671)
Q Consensus 21 ~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~Ldrll 100 (671)
+++..+.+|++.|+|||+.||+|+|+||||||||++|||+|+++++++++|++||++|+++++|+|++||+||+.|||++
T Consensus 16 ~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 16 ALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 35566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 005891 101 KD 102 (671)
Q Consensus 101 Kd 102 (671)
||
T Consensus 96 kd 97 (97)
T PF12755_consen 96 KD 97 (97)
T ss_pred cC
Confidence 96
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-17 Score=193.18 Aligned_cols=414 Identities=16% Similarity=0.209 Sum_probs=304.5
Q ss_pred HHhHhhhHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhh
Q 005891 27 ETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv 104 (671)
++-...|...+|.++. .+.+.||..-|..+..|++..-.+ .||++++.|...+.+++++-|+.| -.|..+.. ++
T Consensus 74 ~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~-~~ 149 (1075)
T KOG2171|consen 74 AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPE-TF 149 (1075)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh-hh
Confidence 3456778888988885 778999999999988888654444 699999999999999999999999 44555444 66
Q ss_pred cccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc--hh----HHhchHHHHHHHHHhcCCCChHHHHHHHHH
Q 005891 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--ID----MLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (671)
Q Consensus 105 ~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~--~~----li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~ 178 (671)
++.....+..|.+++.++|.+++..||..++..+..+....+ .+ +...+|..+..+-..+.|.+.++-+.+-++
T Consensus 150 ~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~ 229 (1075)
T KOG2171|consen 150 GNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEA 229 (1075)
T ss_pred ccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence 655455688999999999999777799999999988776553 33 444556666655566677777777777777
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhcC---cCcccchHhHHHHHhhhhcCCcHh-
Q 005891 179 LWEFLQEIKNSPSVDYGRMAEILVQRAASP--DEFTRLTAITWINEFVKLGG---DQLVPYYADILGAILPCISDKEEK- 252 (671)
Q Consensus 179 L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~--d~~irl~al~WI~~~~~l~~---~~l~pflp~LLp~LL~~Lsd~~~e- 252 (671)
|.+|++..++-....+..++...+.-..++ |+.+|..|++.|..+.+..| ...-+|.+.+++.++.+|.+...+
T Consensus 230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 230 LIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 777777655432345788888888877776 68899999998877777643 234568999999999999753221
Q ss_pred ---------------HHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh
Q 005891 253 ---------------IRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 317 (671)
Q Consensus 253 ---------------IR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~ 317 (671)
....|.++.+.+.--.+ ...-+..+++.+...+.+++|..|-|+|..|..+.++|++.|...
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~---g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~ 386 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHLG---GKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN 386 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcCC---hhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 33445555555433332 123357888899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----------------------------------------------
Q 005891 318 LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD----------------------------------------------- 350 (671)
Q Consensus 318 l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~----------------------------------------------- 350 (671)
+++++|.+++.|+|+.|.||-.+|.++++++.+
T Consensus 387 l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 387 LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS 466 (1075)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence 999999999999999999999999999999832
Q ss_pred --cchHHHHHHHHHhhc-cccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhccc--CChhHHHHHHHHHHHHhccch-
Q 005891 351 --LQHFRQLVVFLVHNF-RVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGE--ADLDFACTMVQALNLILLTSS- 424 (671)
Q Consensus 351 --~~~F~~fm~~LL~lf-~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~--~dl~F~~~mVq~Ln~iLLTs~- 424 (671)
++|++.+|..++.++ .++.+.++ |.+-.++|.+=... .=.++..+.+-.|-.+|.|+.
T Consensus 467 ~l~pYLd~lm~~~l~~L~~~~~~~v~----------------e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~ 530 (1075)
T KOG2171|consen 467 ILEPYLDGLMEKKLLLLLQSSKPYVQ----------------EQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADD 530 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHH----------------HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCc
Confidence 256666666444433 33333333 44666666665442 225666777788888888766
Q ss_pred -hHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHH-hhhHHHHHHHHHhhccc
Q 005891 425 -ELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLA-QTYHHASAVIQSLVEED 484 (671)
Q Consensus 425 -El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lslcll~-~~y~~a~~l~~~~~~~e 484 (671)
|+.++|.+=-.+ ++++++..=- +=+++|..+++...+..
T Consensus 531 ~d~r~LrgktmEc---------------------isli~~AVGke~F~~~a~eliqll~~~~ 571 (1075)
T KOG2171|consen 531 KDLRELRGKTMEC---------------------LSLIARAVGKEKFLPLAEELIQLLLELQ 571 (1075)
T ss_pred hhhHHHHhhHHHH---------------------HHHHHHHhhhhhhhHhHHHHHHHHHhhc
Confidence 777777664331 2333333332 23678888998888875
No 7
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.6e-16 Score=176.23 Aligned_cols=304 Identities=20% Similarity=0.206 Sum_probs=231.5
Q ss_pred hhHHHHHhccCCCCH-HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchh
Q 005891 32 QIVPPVLNSFSDQDS-RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQF 110 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~-rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f 110 (671)
.++..+-...+|+.+ ..|..+.-+........+....+|+-.++|.++..++|..+.||.+|.. .+|.++.-.+.+
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~---a~kai~~~~~~~ 250 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVE---AAKAIMRCLSAY 250 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHH---HHHHHHHhcCcc
Confidence 366677778888864 4444454444444444455667899999999999999999999999944 233344334578
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC
Q 005891 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~ 190 (671)
.+..|+|.+..-+....|+++..+++.+..+....+..+..++|++++.+...|+|++++||+++.+||.++...+.+
T Consensus 251 aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-- 328 (569)
T KOG1242|consen 251 AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-- 328 (569)
T ss_pred hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc--
Confidence 899999999999998899999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCChHHHHHHHHHhcCCCC---------------------------------------HHHHHHHHHHHHHHHhhc--Cc
Q 005891 191 SVDYGRMAEILVQRAASPD---------------------------------------EFTRLTAITWINEFVKLG--GD 229 (671)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d---------------------------------------~~irl~al~WI~~~~~l~--~~ 229 (671)
.|+..++|.+++++.++. ..++..+...+.+++.+- +.
T Consensus 329 -~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~ 407 (569)
T KOG1242|consen 329 -PDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPK 407 (569)
T ss_pred -HHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHH
Confidence 568888888888887775 145667777888888875 77
Q ss_pred CcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCC-----------------------CC----------
Q 005891 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG-----------------------FD---------- 276 (671)
Q Consensus 230 ~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~-----------------------~d---------- 276 (671)
++.||+|.++|++-..+.|..||+|.+|.++.+.+.+-.++.... .+
T Consensus 408 ~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v 487 (569)
T KOG1242|consen 408 DLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV 487 (569)
T ss_pred HHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc
Confidence 899999999999999999999999999999998777655432110 01
Q ss_pred --hHhHHHHHHHhcCCC--cHHHHHHHHHHHHH-HHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHH
Q 005891 277 --VGPILSIATRQLSSE--WEATRIEALHWIST-LLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (671)
Q Consensus 277 --l~~il~~L~~~L~~~--~~~tRiaaL~WL~~-L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~ 342 (671)
++++++.+.....+. .+..|... .|+.. +-...+....+|..++++.+++.+.|.++.++..+++
T Consensus 488 ~~~~~~~~~~~a~~~~~~~~~~~~dg~-~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~ 557 (569)
T KOG1242|consen 488 EKVEDILPEILANASSVLIDERIRDGV-IWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALE 557 (569)
T ss_pred hHHHHHHHHHHHHHhhccchhhhccCe-eehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhh
Confidence 122222222222111 12233333 34443 3344567788999999999999999999888876664
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1e-13 Score=162.27 Aligned_cols=363 Identities=18% Similarity=0.179 Sum_probs=246.9
Q ss_pred hHHHHHHHHHHHHHH--HHHHhh----------hhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhh
Q 005891 3 KWYSFLFEIIVEQFL--LYADLF----------FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIF 70 (671)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~----------~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~ 70 (671)
.++.++..+++...| +-|++| ..+...++.|++.|+..+.|+++||||+||.++..++.....++..+
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 445566666666666 333333 23345788899999999999999999999999999987777777766
Q ss_pred HHHHHH-HHHHhhcCCch-HHHHHH-HHHHHHHHHhhcccchhhhhhhHH-HHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 005891 71 FNQIFD-ALCKLSADSDA-NVQSAA-HLLDRLVKDIVTESDQFSIEEFIP-LLRERMNVLNPYVRQFLVGWITVLDSVPD 146 (671)
Q Consensus 71 f~eIf~-~L~kL~~D~d~-~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP-~L~e~i~~~np~vR~~alswL~~L~~ip~ 146 (671)
..+.++ +|.....|++. .|...| .++..+.++...+.=...++.++. .+........|.+|..+++.|..++...+
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 655555 67777777765 677666 667776665544321223555555 44445567899999999999999999999
Q ss_pred hhHHhchHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHhc---CCCCHHHHHHHHH
Q 005891 147 IDMLGFLPDFLDGLFNMLSDSS----HEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRA---ASPDEFTRLTAIT 218 (671)
Q Consensus 147 ~~li~~Lp~fL~gLf~lL~D~~----~eVR~~a~~~L~~ll~~I~~~~-~~d~~~iI~iLl~~~---~s~d~~irl~al~ 218 (671)
..+++|++.+++-|.++|..++ .+.|-.+.+|++-....+|+.. ..+-+.+|..+...+ .+.+...+-..+.
T Consensus 508 ~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 508 EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA 587 (1075)
T ss_pred hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 9999999999999999886554 5678888899998888887532 345678888888873 3334556666666
Q ss_pred HHHHHHhhcCcCcccchHhHHHHHhhhhcC-CcH-----------------------------------hHHHHHHHHHH
Q 005891 219 WINEFVKLGGDQLVPYYADILGAILPCISD-KEE-----------------------------------KIRVVARETNE 262 (671)
Q Consensus 219 WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd-~~~-----------------------------------eIR~~A~~~n~ 262 (671)
.+..++++.|++|.||+|.++|.+++.... ++. +-+..|+.+..
T Consensus 588 ~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv 667 (1075)
T KOG2171|consen 588 FWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALG 667 (1075)
T ss_pred HHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHH
Confidence 667899999999999999999999987652 110 12222333333
Q ss_pred HHHHhcCCCCCCCChHhHHH-HHHHhcCCCcHHHHHHHHHHHHHHHh-------hChhhHhhhhhHHHHHHHHhcCCCC-
Q 005891 263 ELRAIKADPADGFDVGPILS-IATRQLSSEWEATRIEALHWISTLLN-------RHRTEVLHFLNDIFDTLLKALSDPS- 333 (671)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~-~L~~~L~~~~~~tRiaaL~WL~~L~~-------~~p~~i~~~l~~l~p~LL~~LsD~s- 333 (671)
.+....+. +..-.+.++++ .+-.....-+..+|.||+.-+-.+.. ++|..+.+....++|.+++.+.++.
T Consensus 668 ~~a~~lk~-~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e 746 (1075)
T KOG2171|consen 668 EYAKELKE-AFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPE 746 (1075)
T ss_pred HHHHhhhh-hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCc
Confidence 33222221 11112355555 12222223446688888865554433 5777888889999999999998865
Q ss_pred HHHHHHHHHHHHHHh-------hccchHHHHHHHHHhhcc
Q 005891 334 DEVVLLVLEVHACIA-------KDLQHFRQLVVFLVHNFR 366 (671)
Q Consensus 334 ~eV~~~~l~lLa~Is-------~~~~~F~~fm~~LL~lf~ 366 (671)
.+|....++.++..- =++.+.+.+...++....
T Consensus 747 ~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l 786 (1075)
T KOG2171|consen 747 TEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLL 786 (1075)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHH
Confidence 566666665554432 256677766666655443
No 9
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.3e-14 Score=171.73 Aligned_cols=313 Identities=18% Similarity=0.221 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC
Q 005891 5 YSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (671)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D 84 (671)
-+|||+-|+++ -+.+.++|+..++|.+.+.=.||+..||.+.......++---+..+-.|+|+|++.|...+++
T Consensus 977 aAfGf~~i~~~------a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 977 AAFGFGAIAKQ------AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS 1050 (1702)
T ss_pred hhhchHHHHHH------HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc
Confidence 37999999999 488899999999999999999999999996543322233222233446777888777777777
Q ss_pred CchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhHHhchHHHHHHHHHh
Q 005891 85 SDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNM 163 (671)
Q Consensus 85 ~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~-ip~~~li~~Lp~fL~gLf~l 163 (671)
.+-.||+++ |..+..+.. -|-.++.+.+|+++..+|+.
T Consensus 1051 kewRVReas-----------------------------------------clAL~dLl~g~~~~~~~e~lpelw~~~fRv 1089 (1702)
T KOG0915|consen 1051 KEWRVREAS-----------------------------------------CLALADLLQGRPFDQVKEKLPELWEAAFRV 1089 (1702)
T ss_pred hhHHHHHHH-----------------------------------------HHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 777777766 222222222 33356788999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhcCCCCC--------hHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhhcCcCcccc
Q 005891 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVD--------YGRMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVPY 234 (671)
Q Consensus 164 L~D~~~eVR~~a~~~L~~ll~~I~~~~~~d--------~~~iI~iLl~-~~~s~d~~irl~al~WI~~~~~l~~~~l~pf 234 (671)
+.|-...||++++.+...+.+.+.+..+++ ++.++|.++. ..-+.-+++|..++.-+..+.+-.|..+.||
T Consensus 1090 mDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~ 1169 (1702)
T KOG0915|consen 1090 MDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH 1169 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch
Confidence 999999999999888888887776654432 4667777765 3446679999999999999999999999999
Q ss_pred hHhHHHHHhhhhcCCcHhH-HHHHH-------HHHHHHHHhcCCC----------CCCCC---hHhHHHHHHHhcCC-Cc
Q 005891 235 YADILGAILPCISDKEEKI-RVVAR-------ETNEELRAIKADP----------ADGFD---VGPILSIATRQLSS-EW 292 (671)
Q Consensus 235 lp~LLp~LL~~Lsd~~~eI-R~~A~-------~~n~~L~~~i~~~----------~~~~d---l~~il~~L~~~L~~-~~ 292 (671)
+|+++|.++...+.-+|.+ --.+. ++.+++...+... -..+| +++++|.+++-..+ -+
T Consensus 1170 ~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVg 1249 (1702)
T KOG0915|consen 1170 FPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVG 1249 (1702)
T ss_pred hhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC
Confidence 9999999999988666542 22222 2223322222110 11234 47888999988864 46
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHH---HHHHHHHHhhccchHHHHHHHHHhhc
Q 005891 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLL---VLEVHACIAKDLQHFRQLVVFLVHNF 365 (671)
Q Consensus 293 ~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~---~l~lLa~Is~~~~~F~~fm~~LL~lf 365 (671)
-.||.+|-..+..|..+++.+|.||.++++-.++....|.++.|+.. |+--|.++++ +..+.+.+..++..+
T Consensus 1250 l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss-~dq~qKLie~~l~~~ 1324 (1702)
T KOG0915|consen 1250 LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS-PDQMQKLIETLLADL 1324 (1702)
T ss_pred CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999998888774 4444555553 556777666666643
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.2e-13 Score=150.98 Aligned_cols=349 Identities=20% Similarity=0.207 Sum_probs=269.3
Q ss_pred hhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhh--cCCchHHHH------
Q 005891 22 LFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLS--ADSDANVQS------ 91 (671)
Q Consensus 22 ~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv--~~~~il~~f~eIf~~L~kL~--~D~d~~Vr~------ 91 (671)
-+..+.+++..|+.-.+..-+|+|..|---|||=...++.. ++....+|.+.++|.|...+ +|.|....+
T Consensus 246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence 45566789999999999999999999999999999888865 34455699999999998643 333332221
Q ss_pred ------------------------------------------------HH-HHHHHHHHHhhcccchhhhhhhHHHHHHh
Q 005891 92 ------------------------------------------------AA-HLLDRLVKDIVTESDQFSIEEFIPLLRER 122 (671)
Q Consensus 92 ------------------------------------------------gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~ 122 (671)
-. ++||-+.. +. +..-++.++|+|.+.
T Consensus 326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-vf---~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-VF---GDELLPILLPLLKEH 401 (885)
T ss_pred cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-hh---HHHHHHHHHHHHHHH
Confidence 11 12222111 11 245689999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCC-CChHHHHHHH
Q 005891 123 MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS-VDYGRMAEIL 201 (671)
Q Consensus 123 i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~-~d~~~iI~iL 201 (671)
+...+|.+|...+-.++.++.-.-..+.+|||++++-|..+|.|..+-||+.+|=.|.++.+-+...+. ..+.+++.-+
T Consensus 402 L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 999999999999999999988777789999999999999999999999999999999999998865442 2477888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc-CCc-------HhHHHHHHHHHHHH-----HHh-
Q 005891 202 VQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKE-------EKIRVVARETNEEL-----RAI- 267 (671)
Q Consensus 202 l~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls-d~~-------~eIR~~A~~~n~~L-----~~~- 267 (671)
+.++-+++..++..|+.....+.+-.+..++||+..|+..+..+.+ |.. ..|+..|..+-..| ++.
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL 561 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL 561 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh
Confidence 9999999999999999999999999999999999999999988887 432 34666665552221 000
Q ss_pred ----------cCC--------------------------------------------------CC-----C------CCC
Q 005891 268 ----------KAD--------------------------------------------------PA-----D------GFD 276 (671)
Q Consensus 268 ----------i~~--------------------------------------------------~~-----~------~~d 276 (671)
+.+ +. + .+|
T Consensus 562 mPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLD 641 (885)
T KOG2023|consen 562 MPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLD 641 (885)
T ss_pred ccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHH
Confidence 000 00 0 011
Q ss_pred ------------------hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHH
Q 005891 277 ------------------VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL 338 (671)
Q Consensus 277 ------------------l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~ 338 (671)
-..++..+.+.+.++..++|.+|.-.|+.+...|++.+.|+.+.++|.+...++-+.-.|..
T Consensus 642 L~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~n 721 (885)
T KOG2023|consen 642 LLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCN 721 (885)
T ss_pred HHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHH
Confidence 12455567778889999999999999999999999999999999999998777666667889
Q ss_pred HHHHHHHHHh-----hccchHHHHHHHHHhhcc---ccchhhhh
Q 005891 339 LVLEVHACIA-----KDLQHFRQLVVFLVHNFR---VDNSLLEK 374 (671)
Q Consensus 339 ~~l~lLa~Is-----~~~~~F~~fm~~LL~lf~---~d~~lLe~ 374 (671)
+|+|.+++|+ +.++|-.+++..|..... +++.++|.
T Consensus 722 NA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllEN 765 (885)
T KOG2023|consen 722 NAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLEN 765 (885)
T ss_pred HHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHh
Confidence 9999999999 345777788888877653 22455554
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.8e-12 Score=141.80 Aligned_cols=364 Identities=15% Similarity=0.172 Sum_probs=265.3
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
..++...+..++-|++.||.+...++-.......+.... .+..-+.++++-++..-|.|| ..+..+++....+ .
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~---~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~--~ 169 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE---YVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIE--S 169 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH---HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHh--h
Confidence 347778899999999999999988887776544443322 333344444544444444444 7777777755443 2
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHH-HHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQ-FLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~-~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
+.-..|+--+.+.+.+.++..|. .+.-.........|...-+|+..+++.+|...+|..++||.+|..+...+...+.-
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 44567889999999997765544 34444444455556777889999999999999999999999999999998876632
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
.-...++|-++..+.+..|..+..+++.++.+....+..+--++|.++|.+-.-|.|+.+++|+++.++...+...+
T Consensus 250 ---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 250 ---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred ---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 34677888888888777899999999999999999999888899999999999999999999999999887765544
Q ss_pred CC----------------CC-------------------CCCChHhHHHHHHHhcCCCcHHH-HHHHH-HHHHHHHhhCh
Q 005891 269 AD----------------PA-------------------DGFDVGPILSIATRQLSSEWEAT-RIEAL-HWISTLLNRHR 311 (671)
Q Consensus 269 ~~----------------~~-------------------~~~dl~~il~~L~~~L~~~~~~t-RiaaL-~WL~~L~~~~p 311 (671)
.. +. ++..++-+++.|.+.+...+..+ |.+|. .|-..-.--.|
T Consensus 327 dN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 327 DNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred ccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH
Confidence 32 11 12346778888888887554444 43333 33333333359
Q ss_pred hhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhHH-HHHHHHHhccCC
Q 005891 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRG-ALIIRRLCVLLD 388 (671)
Q Consensus 312 ~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~Rg-~~IIR~Lc~~L~ 388 (671)
..+.+|++.++|.+=+.+.|+.||||..+.+.|+.+-+ ++.+|++..-.+.+...........-| +.-+-..|..++
T Consensus 407 ~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~ 486 (569)
T KOG1242|consen 407 KDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLG 486 (569)
T ss_pred HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhccc
Confidence 99999999999999999999999999999999876663 466776655555555544433332222 236677777777
Q ss_pred hHHHHHHHHHhhcc
Q 005891 389 AERVYRELSTILEG 402 (671)
Q Consensus 389 ~E~Iy~~la~iL~~ 402 (671)
-|..+..+++++..
T Consensus 487 v~~~~~~~~~~~a~ 500 (569)
T KOG1242|consen 487 VEKVEDILPEILAN 500 (569)
T ss_pred chHHHHHHHHHHHH
Confidence 78888888877754
No 12
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.2e-11 Score=147.30 Aligned_cols=360 Identities=18% Similarity=0.233 Sum_probs=260.6
Q ss_pred hhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-chhhhhHHHHHHHHHHhhcCCchHHHHHHH-HHHHHHHH
Q 005891 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFFNQIFDALCKLSADSDANVQSAAH-LLDRLVKD 102 (671)
Q Consensus 25 ~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~-~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~-~LdrllKd 102 (671)
-++.|+.+|..-++..+++++||||.++|-|+..+...-. ..+....+++|.++++...|-..+||+||+ +.+.+-|=
T Consensus 1032 ~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1032 VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999875322 244567889999999999999999999995 33444442
Q ss_pred hhcc-------cchhhhhhhHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHH
Q 005891 103 IVTE-------SDQFSIEEFIPLLR-ERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQ 174 (671)
Q Consensus 103 Iv~e-------~~~f~L~~fIP~L~-e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~ 174 (671)
+|.- .+...++.++|.|. +.+.+.-+.||.+.++-+.-+.+..|..+.+|+|++++-|.+..+--.+.|-.-
T Consensus 1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred HhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHH
Confidence 3321 24566889999887 455678899999999999999999999999999999999988777766655422
Q ss_pred --------HHHHHHHHHHHhhc-CC----------CCC---hHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCc
Q 005891 175 --------ADSALWEFLQEIKN-SP----------SVD---YGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQL 231 (671)
Q Consensus 175 --------a~~~L~~ll~~I~~-~~----------~~d---~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l~~~~l 231 (671)
..++++..=..+.+ .| ++| +++|+|.+.+..+.+ .--.|..|...|.-++.-.|.++
T Consensus 1192 ls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em 1271 (1702)
T KOG0915|consen 1192 LSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM 1271 (1702)
T ss_pred HHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc
Confidence 22333333322222 11 345 688899998888765 34567778888888888899999
Q ss_pred ccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHH-HHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 005891 232 VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSI-ATRQLSSEWEATRIEALHWISTLLNRH 310 (671)
Q Consensus 232 ~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~-L~~~L~~~~~~tRiaaL~WL~~L~~~~ 310 (671)
-||..+++.++++...|.++.+|.....+.+.|.+.-.++ -....+.. +..++.+......++|-.-.. +....
T Consensus 1272 tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d----q~qKLie~~l~~~l~k~es~~siscatis~-Ian~s 1346 (1702)
T KOG0915|consen 1272 TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD----QMQKLIETLLADLLGKDESLKSISCATISN-IANYS 1346 (1702)
T ss_pred CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhh
Confidence 9999999999999999999999999999999998875431 13444543 444554433322444444344 99999
Q ss_pred hhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc-----hHHHHHHHHHhhccccc-hhhhhHHHHHHHHHh
Q 005891 311 RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ-----HFRQLVVFLVHNFRVDN-SLLEKRGALIIRRLC 384 (671)
Q Consensus 311 p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~-----~F~~fm~~LL~lf~~d~-~lLe~Rg~~IIR~Lc 384 (671)
++.+.+|.+.++|.+.=...+...+....=-++|..+++++. |....+..+.....++. =-+..-+.--||..|
T Consensus 1347 ~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a 1426 (1702)
T KOG0915|consen 1347 QEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIA 1426 (1702)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc
Confidence 999999999999999888877744444444468888885321 44444444444443332 222333455677777
Q ss_pred ccCCh
Q 005891 385 VLLDA 389 (671)
Q Consensus 385 ~~L~~ 389 (671)
..++.
T Consensus 1427 ~~~ss 1431 (1702)
T KOG0915|consen 1427 EGLSS 1431 (1702)
T ss_pred ccccc
Confidence 77644
No 13
>PRK09687 putative lyase; Provisional
Probab=99.49 E-value=6.2e-12 Score=132.44 Aligned_cols=259 Identities=15% Similarity=0.093 Sum_probs=202.8
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
..|-..-+++++..+.|+|.+||..|+.+|..+.. +++++.+.+++.|.++.||..| ..|..+ -.
T Consensus 18 ~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~l----g~ 83 (280)
T PRK09687 18 SQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQL----GM 83 (280)
T ss_pred HHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhc----CC
Confidence 44556677888899999999999999999766531 4778888899999999999988 554442 11
Q ss_pred ccchhhhhhhHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891 106 ESDQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~-i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
. .......+|.|... ..++++.||..++..+..+.+-. ....|..++.+...+.|++..||..+..+|+.+
T Consensus 84 -~-~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-- 155 (280)
T PRK09687 84 -A-KRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-- 155 (280)
T ss_pred -C-ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc--
Confidence 0 11145678888877 67899999999999999875322 234677888888899999999999998887532
Q ss_pred HhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 185 ~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
+ -+..++.|+..+.++++.+|..|...+..+ + .--|..++.+.+.+.|.+++||..|..+.+.+
T Consensus 156 --~------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 156 --N------DEAAIPLLINLLKDPNGDVRNWAAFALNSN----K----YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred --C------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 2 256889999999999999999999988754 1 12578899999999999999999998876542
Q ss_pred HHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcC-CCCHHHHHHHHHH
Q 005891 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-DPSDEVVLLVLEV 343 (671)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls-D~s~eV~~~~l~l 343 (671)
++ ...++.|.+.+.++. .|..+...|+.+-. +..+|.|...+. +++++|+.++.|.
T Consensus 220 ----~~-------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 220 ----KD-------KRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred ----CC-------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHH
Confidence 21 588999999998866 47777777777654 357888999886 8899999999998
Q ss_pred HHH
Q 005891 344 HAC 346 (671)
Q Consensus 344 La~ 346 (671)
+.+
T Consensus 277 ~~~ 279 (280)
T PRK09687 277 LKR 279 (280)
T ss_pred Hhc
Confidence 875
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.1e-12 Score=142.34 Aligned_cols=334 Identities=13% Similarity=0.133 Sum_probs=246.2
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHhhcCCchH-HHHHH-HHHHHHHHHhhc
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDAN-VQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i-l~~f~eIf~~L~kL~~D~d~~-Vr~gA-~~LdrllKdIv~ 105 (671)
--++|..-+++.|+.++++++..|+.++..|+.. |+ ...|++++..|..-+.+.+++ ||+++ +++.-+|.|+..
T Consensus 87 ~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~---ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~p 163 (859)
T KOG1241|consen 87 IREQVKNNILRTLGSPEPRRPSSAAQCVAAIACI---ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP 163 (859)
T ss_pred HHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHh---hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH
Confidence 3457888999999999999999999998777643 33 245899999999888888776 99999 999999998887
Q ss_pred ccchhhhhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhHHh--chHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 005891 106 ESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~~--~np~vR~~alswL~~L~~ip~~~li~--~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ 181 (671)
+.-....+.++--+...++. ++..||..+..++..=....+.++-. --+-|++..+..-.-++.+||.+|-.||.+
T Consensus 164 evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Clvk 243 (859)
T KOG1241|consen 164 EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVK 243 (859)
T ss_pred HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHH
Confidence 63223345556666666654 67799999988887532222211110 112246666667777899999999999999
Q ss_pred HHHHhhcCCCCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc-------CcCc---c-c--------chHhHHHH
Q 005891 182 FLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLG-------GDQL---V-P--------YYADILGA 241 (671)
Q Consensus 182 ll~~I~~~~~~d~-~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~-------~~~l---~-p--------flp~LLp~ 241 (671)
+...--......+ +.+..+-+..+.++++++++.++++.+.+++-- ++.. . | -++.++|.
T Consensus 244 Im~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~ 323 (859)
T KOG1241|consen 244 IMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPV 323 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHH
Confidence 8863321000112 225555566788999999999999666555420 1111 1 1 15588999
Q ss_pred HhhhhcCCc--H-----hHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-Chhh
Q 005891 242 ILPCISDKE--E-----KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTE 313 (671)
Q Consensus 242 LL~~Lsd~~--~-----eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~-~p~~ 313 (671)
++..|...+ + ++..+|..|..-+.+.+++ . =+..+++-+.+++.+++|..|.+|...++-+.++ ++..
T Consensus 324 Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~ 399 (859)
T KOG1241|consen 324 LLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---D-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK 399 (859)
T ss_pred HHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---c-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence 999887422 1 4788888898888888875 1 2468888999999999999999999999977776 6788
Q ss_pred HhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHhhccccc
Q 005891 314 VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVDN 369 (671)
Q Consensus 314 i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-------~~~~F~~fm~~LL~lf~~d~ 369 (671)
..+..++.+|.+++.++|++-.|+..+-|++++|++ ++.+....+..+++-+.++.
T Consensus 400 Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP 462 (859)
T KOG1241|consen 400 LTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP 462 (859)
T ss_pred hhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc
Confidence 899999999999999999999999999999999994 56777777777777665553
No 15
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.45 E-value=3.1e-11 Score=140.37 Aligned_cols=346 Identities=16% Similarity=0.149 Sum_probs=263.1
Q ss_pred HHHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHH-H
Q 005891 17 LLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAH-L 95 (671)
Q Consensus 17 ~~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~-~ 95 (671)
..+.+++..-.+....+.+..+...+|++|+|||..++....+.+..+.+. .+++.++....+..|.+.++|.++. -
T Consensus 301 ~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~--~~~~~~~~~~~l~~~~~~e~r~a~a~~ 378 (759)
T KOG0211|consen 301 VSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA--TRTQLVPPVSNLLKDEEWEVRYAIAKK 378 (759)
T ss_pred HHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc--CcccchhhHHHHhcchhhhhhHHhhcc
Confidence 355666666336677888999999999999999999999888887766633 3568888899999999999998773 2
Q ss_pred HHHHHHHhhcc--cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHH
Q 005891 96 LDRLVKDIVTE--SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ 173 (671)
Q Consensus 96 LdrllKdIv~e--~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~ 173 (671)
...+.. +... -..-..+.++|.+.....+.+++||....+-+..+..+.+.+ .-++.+++.+...+.|..++||.
T Consensus 379 ~~~l~~-~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~ti~~llp~~~~~l~de~~~V~l 455 (759)
T KOG0211|consen 379 VQKLAC-YLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--RTISELLPLLIGNLKDEDPIVRL 455 (759)
T ss_pred hHHHhh-hcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--cCccccChhhhhhcchhhHHHHH
Confidence 233222 2211 012346777999999999999999999999999888776633 22344455555599999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCC--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcH
Q 005891 174 QADSALWEFLQEIKNSPSVD--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE 251 (671)
Q Consensus 174 ~a~~~L~~ll~~I~~~~~~d--~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~ 251 (671)
....-+..... .....+++ -+..+|.+.....+..|++|.+.+..|...+.-.+..+ |-+++-+.+..++.|.+.
T Consensus 456 nli~~ls~~~~-v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~--~~~~~~~l~~~~l~d~v~ 532 (759)
T KOG0211|consen 456 NLIDKLSLLEE-VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEF--FDEKLAELLRTWLPDHVY 532 (759)
T ss_pred hhHHHHHHHHh-ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH--hhHHHHHHHHhhhhhhHH
Confidence 87644422222 21112233 47788999888888899999999999988887766444 467788888889999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCC
Q 005891 252 KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (671)
Q Consensus 252 eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD 331 (671)
+||+.|......+....+ ..|.-..+++.+.....++++..|.+.+..+..+++.++.++. ...++|.+.....|
T Consensus 533 ~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~--~~~Llp~~~~l~~D 607 (759)
T KOG0211|consen 533 SIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT--CEDLLPVFLDLVKD 607 (759)
T ss_pred HHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH--HHHHhHHHHHhccC
Confidence 999999998888877765 3688889999888888888999999999999999999999987 88999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHhhcccc-chhhhhH
Q 005891 332 PSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVD-NSLLEKR 375 (671)
Q Consensus 332 ~s~eV~~~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d-~~lLe~R 375 (671)
+.++||..+++.|.+|.. ...--+..+..++.-+..| ..-..-|
T Consensus 608 ~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~ 654 (759)
T KOG0211|consen 608 PVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYR 654 (759)
T ss_pred CchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHH
Confidence 999999999999999884 2333444555555544434 4434444
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.44 E-value=1.6e-11 Score=148.52 Aligned_cols=244 Identities=21% Similarity=0.170 Sum_probs=185.7
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhh
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~ 111 (671)
-++.++..|.|+|+.||..|+++|..+.. ++.++.|.+++.|+++.||..| ..|.++.+... +
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------~ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------P 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------c
Confidence 55678888899999999999999877631 3567888899999999999988 66555432111 1
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~ 191 (671)
.+.+.+.+.+.+|.||..++.+|..+..-. + ..+.+.|.|++++||.+|..+|..+ +.
T Consensus 686 ----~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~--------~---~~l~~~L~D~d~~VR~~Av~aL~~~----~~--- 743 (897)
T PRK13800 686 ----APALRDHLGSPDPVVRAAALDVLRALRAGD--------A---ALFAAALGDPDHRVRIEAVRALVSV----DD--- 743 (897)
T ss_pred ----hHHHHHHhcCCCHHHHHHHHHHHHhhccCC--------H---HHHHHHhcCCCHHHHHHHHHHHhcc----cC---
Confidence 256667788899999999999998864211 1 2345689999999999998888764 11
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC
Q 005891 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (671)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~ 271 (671)
.+.++..+.++++.+|..+...+..+-.- -+..++.+...+.|++++||..|..+...+ +.
T Consensus 744 ------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~- 804 (897)
T PRK13800 744 ------VESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAEL----GC- 804 (897)
T ss_pred ------cHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhc----CC-
Confidence 13467788999999999999888654321 123367788889999999999998876543 11
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
-..+...+...+.+++|.+|.+|+..|..+.. +.-++.|++.|+|+++.||..+.+.|+++.
T Consensus 805 -----~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 805 -----PPDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred -----cchhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 12345668888899999999999999976531 234578999999999999999999999984
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.34 E-value=9.8e-10 Score=124.83 Aligned_cols=349 Identities=19% Similarity=0.213 Sum_probs=234.0
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
+..--+++.+...+.++++.+|..|...+.+|. ..++ .+.+++.+.+++.|+++.||+.| .++.++.+.-.
T Consensus 75 ~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~---~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-- 146 (526)
T PF01602_consen 75 ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEM---AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-- 146 (526)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHH---HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccch---hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--
Confidence 345558899999999999999999988888875 3333 46789999999999999999988 66677666311
Q ss_pred cchhhhhh-hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 107 SDQFSIEE-FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 107 ~~~f~L~~-fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
..++. ++|.+.+.+.+.+|.|+..++..+..+ +.++......+|.+...|.++++++++-++..+.+.+..+...
T Consensus 147 ---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 147 ---DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp ---CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred ---HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 12334 799999999999999999999999988 4454444478899999999999999999887665555443321
Q ss_pred hhcCCCCCh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHH
Q 005891 186 IKNSPSVDY--GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (671)
Q Consensus 186 I~~~~~~d~--~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~ 263 (671)
- ..+. ..+++.+...+++.++.+..+|+..+. .+.+..- .+..+++.+...+.++++++|-.+.++...
T Consensus 223 ~----~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~---~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 223 E----PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII---KLSPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSLSQ 293 (526)
T ss_dssp S----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred C----hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH---HhhcchH--HHHhhHHHHHHHhhcccchhehhHHHHHHH
Confidence 1 1123 468999999888888888887777654 4444322 578899999999999999999998876555
Q ss_pred HHHhcCCCCCCCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCC-CHHHHHHHH
Q 005891 264 LRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVL 341 (671)
Q Consensus 264 L~~~i~~~~~~~dl~~il~~L~~~L-~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~-s~eV~~~~l 341 (671)
+..... .. +. -.......+ .+++..+|..+++-+..+..... ...+++.|++.+++. +++++..+.
T Consensus 294 l~~~~~---~~--v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n------~~~Il~eL~~~l~~~~d~~~~~~~i 361 (526)
T PF01602_consen 294 LAQSNP---PA--VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESN------VKEILDELLKYLSELSDPDFRRELI 361 (526)
T ss_dssp HCCHCH---HH--HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHC--HHHHHHHH
T ss_pred hhcccc---hh--hh-hhhhhhheecCCCChhHHHHHHHHHhhcccccc------hhhHHHHHHHHHHhccchhhhhhHH
Confidence 433210 00 11 111222233 36778899999998888887442 334667777777555 677899999
Q ss_pred HHHHHHhh-ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh--HHHHHHHHHhhcccCChhHH
Q 005891 342 EVHACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGEADLDFA 409 (671)
Q Consensus 342 ~lLa~Is~-~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~--E~Iy~~la~iL~~~~dl~F~ 409 (671)
..++.++. ..+.++.++..+++++.........-.-..++++...-+. +.+-..+.+.+.+-.+.++.
T Consensus 362 ~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~ 432 (526)
T PF01602_consen 362 KAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEAL 432 (526)
T ss_dssp HHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHH
Confidence 99988884 4556666777777766544333322222233333333222 23444444444443444443
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.34 E-value=1.1e-09 Score=124.39 Aligned_cols=345 Identities=16% Similarity=0.117 Sum_probs=236.4
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
+.-.+...+.++..+..+|...|..+.-++..+.+.-.+. ..-+...+.+-+.++++.+|..| ..+.++. .
T Consensus 37 G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~----~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~ 108 (526)
T PF01602_consen 37 GYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL----LILIINSLQKDLNSPNPYIRGLALRTLSNIR----T 108 (526)
T ss_dssp T---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH----HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----S
T ss_pred CCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH----HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----c
Confidence 4445688899999999999999999888777765432221 23567777888899999999888 5544432 2
Q ss_pred ccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
..-.+.++|.+.+.+.+++|.||..++..+..+....+..+-.. +++.+.+++.|+++.|+.+|..++..+ +
T Consensus 109 ---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~- 180 (526)
T PF01602_consen 109 ---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-K- 180 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-H-
T ss_pred ---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-c-
Confidence 33478899999999999999999999999988876544322221 677788899999999999998888777 1
Q ss_pred hhcCCCC--C-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHH
Q 005891 186 IKNSPSV--D-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (671)
Q Consensus 186 I~~~~~~--d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~ 262 (671)
..+.. + +..++..+.+.+..+++..+..++..+..+....+...- -..+++.+.+.+.+..+.|.-.|.++..
T Consensus 181 --~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 181 --CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp --CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 11111 2 456666666666888999998888887644332221110 0468888888888777777766655543
Q ss_pred HHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHH
Q 005891 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (671)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~ 342 (671)
..... ...+..+++.+...+.+.+...|..++.++..+....+..+. +....+ .....|+++.|+..++.
T Consensus 257 ---~l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~---~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 257 ---KLSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLIL---FFLLYDDDPSIRKKALD 326 (526)
T ss_dssp ---HHSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHH---HHHHCSSSHHHHHHHHH
T ss_pred ---Hhhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhh---heecCCCChhHHHHHHH
Confidence 33221 112467888999999998999999999999999999977776 333332 23335888999999999
Q ss_pred HHHHHhhccchHHHHHHHHHhhc-cccchhhhhHHHHHHHHHhccCCh--HHHHHHHHHhhcc
Q 005891 343 VHACIAKDLQHFRQLVVFLVHNF-RVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEG 402 (671)
Q Consensus 343 lLa~Is~~~~~F~~fm~~LL~lf-~~d~~lLe~Rg~~IIR~Lc~~L~~--E~Iy~~la~iL~~ 402 (671)
++..+++ +...+.++..|++.+ ..+..-.....-.-|+.+|...++ +....++-+++..
T Consensus 327 lL~~l~~-~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~ 388 (526)
T PF01602_consen 327 LLYKLAN-ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI 388 (526)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC
T ss_pred HHhhccc-ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh
Confidence 9999994 778888999999988 332222333333344455544432 3444555555543
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.34 E-value=3.9e-10 Score=129.41 Aligned_cols=281 Identities=18% Similarity=0.229 Sum_probs=205.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHH
Q 005891 43 DQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLR 120 (671)
Q Consensus 43 D~d~rVR~~A~eaL~nI~Kv~~~-~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~ 120 (671)
+.+++..|--..++.++.+-.+. ...++...||+.|++-....+..+|+.- +.|.+++- +.-+.++|.|.
T Consensus 901 ~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l--------~epesLlpkL~ 972 (1233)
T KOG1824|consen 901 ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL--------IEPESLLPKLK 972 (1233)
T ss_pred hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh--------CChHHHHHHHH
Confidence 44444444444454444332222 2236778889999887777777777765 77777643 45688999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC--C-hHHH
Q 005891 121 ERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV--D-YGRM 197 (671)
Q Consensus 121 e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~--d-~~~i 197 (671)
.++.+..+.+|..+++.+....+--+..+-.++-.+++.-.+.+.||+.+||+.|-..+..+.+ ++|.. | ++.+
T Consensus 973 ~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaah---NKpslIrDllpeL 1049 (1233)
T KOG1824|consen 973 LLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAH---NKPSLIRDLLPEL 1049 (1233)
T ss_pred HHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHc---cCHhHHHHHHHHH
Confidence 9999999999999999998765544434444555555555569999999999999777777665 44432 3 5666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCCh
Q 005891 198 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 277 (671)
Q Consensus 198 I~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl 277 (671)
+|.+.+...-..+.||. ++++| | +.-.|..-++|++|-+|..+|++.+.+ ..|+
T Consensus 1050 Lp~Ly~eTkvrkelIre---------VeMGP-----F---------KH~VDdgLd~RKaaFEcmytLLdscld---~~di 1103 (1233)
T KOG1824|consen 1050 LPLLYSETKVRKELIRE---------VEMGP-----F---------KHTVDDGLDLRKAAFECMYTLLDSCLD---RLDI 1103 (1233)
T ss_pred HHHHHHhhhhhHhhhhh---------hcccC-----c---------cccccchHHHHHHHHHHHHHHHHhhhh---hccH
Confidence 66666555443444443 34444 3 456788899999999999999998765 6788
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcC------------CCCHHHHHHHHHHHH
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS------------DPSDEVVLLVLEVHA 345 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls------------D~s~eV~~~~l~lLa 345 (671)
-++++++...|.+. ...|+-++.-+..++..||..+...+|.++..|=++++ |+.++.++.++++++
T Consensus 1104 t~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~ 1182 (1233)
T KOG1824|consen 1104 TEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVA 1182 (1233)
T ss_pred HHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHH
Confidence 99999999999875 88999999999999999999999999999999988876 445677788888776
Q ss_pred HHh-----hccchHHHHHHHH
Q 005891 346 CIA-----KDLQHFRQLVVFL 361 (671)
Q Consensus 346 ~Is-----~~~~~F~~fm~~L 361 (671)
.+. +..+.|..|+..+
T Consensus 1183 ~L~~ip~v~~np~~~df~sqi 1203 (1233)
T KOG1824|consen 1183 ALLTIPEVEKNPQFSDFESQI 1203 (1233)
T ss_pred HHhcccccccChHHHHHHHHh
Confidence 664 2345566666544
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.32 E-value=4.1e-08 Score=113.21 Aligned_cols=311 Identities=16% Similarity=0.206 Sum_probs=215.1
Q ss_pred HHHHHhhhhhHHh--------HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-hhcCCch
Q 005891 17 LLYADLFFYSETI--------LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDA 87 (671)
Q Consensus 17 ~~~~~~~~~~~~y--------l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~k-L~~D~d~ 87 (671)
|+..++|.+...- -..++..+++.+.|++.+|..-|..++.-+++.++.+- ...+.+.||. ++++.++
T Consensus 24 MAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~---le~~ve~L~~~~~s~keq 100 (1233)
T KOG1824|consen 24 MATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ---LETIVENLCSNMLSGKEQ 100 (1233)
T ss_pred hhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH---HHHHHHHHhhhhccchhh
Confidence 3444566555332 23588899999999999999999999988876555543 3466777773 3555544
Q ss_pred HHHHHHHHHHHHHHH------------------------hhc--------------------ccchh---hhhhhHHHHH
Q 005891 88 NVQSAAHLLDRLVKD------------------------IVT--------------------ESDQF---SIEEFIPLLR 120 (671)
Q Consensus 88 ~Vr~gA~~LdrllKd------------------------Iv~--------------------e~~~f---~L~~fIP~L~ 120 (671)
.---.+-.|...+-. |+. .-|.+ .-..++-.+.
T Consensus 101 ~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~ 180 (1233)
T KOG1824|consen 101 LRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLL 180 (1233)
T ss_pred hccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHh
Confidence 322111111111111 110 00000 0111222222
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc-hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 005891 121 ERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAE 199 (671)
Q Consensus 121 e~i~~~np~vR~~alswL~~L~~ip~~~li~~-Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~ 199 (671)
..++.+-..||+-++..|..+....+.++..+ ...+++||-+- +.+..+|.. .+||+.+++.-|.....+.+.++|
T Consensus 181 ~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~--~q~~~~rt~-Iq~l~~i~r~ag~r~~~h~~~ivp 257 (1233)
T KOG1824|consen 181 PQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNR--TQMSATRTY-IQCLAAICRQAGHRFGSHLDKIVP 257 (1233)
T ss_pred hcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCC--CchHHHHHH-HHHHHHHHHHhcchhhcccchhhH
Confidence 23345556889999999998887766665433 44445544432 445677776 589999999888777778999999
Q ss_pred HHHHhc---CCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCC-c-------------------H-----
Q 005891 200 ILVQRA---ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-E-------------------E----- 251 (671)
Q Consensus 200 iLl~~~---~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~-~-------------------~----- 251 (671)
.+.+.| +..+++.|..+++.+..|+.-.|.++.||.|.++..++..++|. + .
T Consensus 258 ~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~de 337 (1233)
T KOG1824|consen 258 LVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDE 337 (1233)
T ss_pred HHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccc
Confidence 999999 66688999999999999999999999999999999999998752 0 0
Q ss_pred ---------hHHHHHHHHHHHHHH-----------hcC--------C----------------------------C----
Q 005891 252 ---------KIRVVARETNEELRA-----------IKA--------D----------------------------P---- 271 (671)
Q Consensus 252 ---------eIR~~A~~~n~~L~~-----------~i~--------~----------------------------~---- 271 (671)
.+|.+|.+|...+.. .++ + +
T Consensus 338 YsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~ 417 (1233)
T KOG1824|consen 338 YSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAM 417 (1233)
T ss_pred cccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhh
Confidence 389999888765331 000 0 0
Q ss_pred ---CCCCC-------hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC
Q 005891 272 ---ADGFD-------VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (671)
Q Consensus 272 ---~~~~d-------l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s 333 (671)
+...| ...++.++..++.+.+..+|..|+.-|..+....|+...+|.+.++|.+...|+|.+
T Consensus 418 e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkS 489 (1233)
T KOG1824|consen 418 EQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKS 489 (1233)
T ss_pred hccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCcc
Confidence 01111 246778899999988888999999999999999999999999999999999999976
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.30 E-value=3.8e-10 Score=136.55 Aligned_cols=245 Identities=19% Similarity=0.188 Sum_probs=185.3
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
.+..++.+...+.|+|+.||.+|+++|..+++.... -+.|...+.|+++.||.+| ..|..+- . +
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~----~--~ 714 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP---------APALRDHLGSPDPVVRAAALDVLRALR----A--G 714 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhc----c--C
Confidence 355788999999999999999999999887532111 2456677888999999988 4444321 1 1
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
+ .+.+...+.+.++.||..++..+..+... +.|...+.|++++||.++...|..+-..
T Consensus 715 --~----~~~l~~~L~D~d~~VR~~Av~aL~~~~~~-------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~--- 772 (897)
T PRK13800 715 --D----AALFAAALGDPDHRVRIEAVRALVSVDDV-------------ESVAGAATDENREVRIAVAKGLATLGAG--- 772 (897)
T ss_pred --C----HHHHHHHhcCCCHHHHHHHHHHHhcccCc-------------HHHHHHhcCCCHHHHHHHHHHHHHhccc---
Confidence 1 23456788999999999999999876432 2345689999999999999988776531
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
-..-++.|...++++++.+|..|+.-+..+ ... +.+.+.+...+.|+++.||..|.++...+
T Consensus 773 -----~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~---g~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l---- 834 (897)
T PRK13800 773 -----GAPAGDAVRALTGDPDPLVRAAALAALAEL---GCP------PDDVAAATAALRASAWQVRQGAARALAGA---- 834 (897)
T ss_pred -----cchhHHHHHHHhcCCCHHHHHHHHHHHHhc---CCc------chhHHHHHHHhcCCChHHHHHHHHHHHhc----
Confidence 122367788888999999999999988644 211 23446678889999999999998887542
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005891 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (671)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa 345 (671)
+ -.+.++.|...+.++++.+|.+|...|..+ .. .+...+.|.+.++|++++||..+.+.|.
T Consensus 835 ~-------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~--------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 835 A-------ADVAVPALVEALTDPHLDVRKAAVLALTRW-PG--------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred c-------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc-CC--------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 146678899999999999999999999886 11 2345667889999999999999998875
No 22
>PRK09687 putative lyase; Provisional
Probab=99.25 E-value=1.6e-09 Score=114.28 Aligned_cols=239 Identities=17% Similarity=0.148 Sum_probs=182.0
Q ss_pred HHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch
Q 005891 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (671)
Q Consensus 75 f~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L 153 (671)
.+.|..++.|.+..||..| ..|.. + .-+...+.+.+.+.+.|+.+|.+++..+..+..-... .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~----~-------~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQL----R-------GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh----c-------CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 4556677799999999988 33322 1 1245677778888999999999999999997542211 4
Q ss_pred HHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc
Q 005891 154 PDFLDGLFNM-LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (671)
Q Consensus 154 p~fL~gLf~l-L~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~ 232 (671)
+..++.|..+ +.|++++||..|..+|+.+...- .......++.+.....++++.+|..++..+..+ .
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~---~----- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI---N----- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc---C-----
Confidence 4566666656 79999999999999998875311 112466788888889999999999988877421 1
Q ss_pred cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh
Q 005891 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (671)
Q Consensus 233 pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~ 312 (671)
-+..++.+++.+.|++++||..|..+.+.+ + .+-..+++.|...+.++++.+|..|...|+.+-.
T Consensus 157 --~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~-----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---- 221 (280)
T PRK09687 157 --DEAAIPLLINLLKDPNGDVRNWAAFALNSN----K-----YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---- 221 (280)
T ss_pred --CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C-----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC----
Confidence 367889999999999999999999887655 1 1235788999999999999999999999987432
Q ss_pred hHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhcc
Q 005891 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (671)
Q Consensus 313 ~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~ 366 (671)
+..+|.|++.|.|+. ++..+...|++|.+ +-..+.+..+++.+.
T Consensus 222 ------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 222 ------KRVLSVLIKELKKGT--VGDLIIEAAGELGD--KTLLPVLDTLLYKFD 265 (280)
T ss_pred ------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--HhHHHHHHHHHhhCC
Confidence 367889999999876 77788899999985 346666666666665
No 23
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.21 E-value=1.2e-08 Score=114.78 Aligned_cols=366 Identities=15% Similarity=0.193 Sum_probs=245.3
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcc
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE 106 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e 106 (671)
-+|+..++..+-.++.|....||-.++.++..+++.+..-....|+++|..|.+.+...- +..|..++|.+---
T Consensus 548 lphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hr------gk~laafLkAigyl 621 (1172)
T KOG0213|consen 548 LPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHR------GKELAAFLKAIGYL 621 (1172)
T ss_pred hhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc------ChHHHHHHHHHhhc
Confidence 578889999999999999999999999999999999888777889999999998765432 23455666654321
Q ss_pred -------cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh----HHhchHHHHHHHH--Hhc---------
Q 005891 107 -------SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID----MLGFLPDFLDGLF--NML--------- 164 (671)
Q Consensus 107 -------~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~----li~~Lp~fL~gLf--~lL--------- 164 (671)
...+-....+-.+..-+..++...+.-++..+...+..-|.+ -...+|.|+..-. ++.
T Consensus 622 iplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykql 701 (1172)
T KOG0213|consen 622 IPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQL 701 (1172)
T ss_pred cccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhH
Confidence 112223344555556678889889988888888877766654 1345666655432 233
Q ss_pred ------------------------CCCChHHHHHHHHHHHHHHHHhhcCCCCC---hHHHHHHHHHhcCCCCHHHHHHHH
Q 005891 165 ------------------------SDSSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPDEFTRLTAI 217 (671)
Q Consensus 165 ------------------------~D~~~eVR~~a~~~L~~ll~~I~~~~~~d---~~~iI~iLl~~~~s~d~~irl~al 217 (671)
.|.++.-|+++....+.....++. .++| -+.++.-++...++++.+.. ..+
T Consensus 702 v~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~-~diderleE~lidgil~Afqeqtt~d~-vml 779 (1172)
T KOG0213|consen 702 VDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGA-ADIDERLEERLIDGILYAFQEQTTEDS-VML 779 (1172)
T ss_pred HHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhcccc-ccccHHHHHHHHHHHHHHHHhcccchh-hhh
Confidence 333444445444444444444432 1122 13344444444444332222 112
Q ss_pred HHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHH
Q 005891 218 TWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRI 297 (671)
Q Consensus 218 ~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRi 297 (671)
.-....+...+..+.||+|.|+..+|..|....+.+|..|.+....+..+.+..++.--++..=.+|-+.+..+..++-=
T Consensus 780 ~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLg 859 (1172)
T KOG0213|consen 780 LGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLG 859 (1172)
T ss_pred hhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHH
Confidence 23334455556678999999999999999999999999999988887666554333323444455788888887777777
Q ss_pred HHHHHHHHHHhhC-hhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchH------HHHHHHHHhhccccch
Q 005891 298 EALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF------RQLVVFLVHNFRVDNS 370 (671)
Q Consensus 298 aaL~WL~~L~~~~-p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F------~~fm~~LL~lf~~d~~ 370 (671)
..|.++..+.... ..++.+-..+++|.|.+-|......|...+..+++.|+.+...| -.+--+|+++++..+|
T Consensus 860 sILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK 939 (1172)
T KOG0213|consen 860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888775 56788899999999999999999999999999999999654333 3355678888877766
Q ss_pred hhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005891 371 LLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (671)
Q Consensus 371 lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (671)
-....+.--+--+.+-++|..|..+|-+=|
T Consensus 940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnL 969 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNL 969 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCHHHHHHHHHhcc
Confidence 443332223334444555544444443333
No 24
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=9.4e-08 Score=108.56 Aligned_cols=377 Identities=16% Similarity=0.155 Sum_probs=246.8
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHH-HHHHHHHhhcCCchHHHHHH-HHHHHHHH---
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQ-IFDALCKLSADSDANVQSAA-HLLDRLVK--- 101 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~e-If~~L~kL~~D~d~~Vr~gA-~~LdrllK--- 101 (671)
+...++|...|...-+-+|.+||.+|..++-.|...--..+.+|..+ +|..-...+...+..|.--| +.....+.
T Consensus 212 E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEi 291 (859)
T KOG1241|consen 212 EMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEI 291 (859)
T ss_pred HhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999999999999887766653322333333333 33333333333333333333 33332222
Q ss_pred Hhhcc------------------------------------------------------------cchhhhhhhHHHHHH
Q 005891 102 DIVTE------------------------------------------------------------SDQFSIEEFIPLLRE 121 (671)
Q Consensus 102 dIv~e------------------------------------------------------------~~~f~L~~fIP~L~e 121 (671)
|+.-| .++.-++..+|++.+
T Consensus 292 D~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee 371 (859)
T KOG1241|consen 292 DLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEE 371 (859)
T ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHH
Confidence 11000 012345677777777
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCc-hhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC----------
Q 005891 122 RMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP---------- 190 (671)
Q Consensus 122 ~i~~~np~vR~~alswL~~L~~ip~-~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~---------- 190 (671)
-|..+||+-|..++=...-+-.-|. ..+.++.+.-++++.++++|++--||..+.-+++++++.+....
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l 451 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL 451 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence 7777777777776655554444443 34667888889999999999999999999999999988776420
Q ss_pred ---------------------------------C--------CChHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHhh
Q 005891 191 ---------------------------------S--------VDYGRMAEILVQRAASPD---EFTRLTAITWINEFVKL 226 (671)
Q Consensus 191 ---------------------------------~--------~d~~~iI~iLl~~~~s~d---~~irl~al~WI~~~~~l 226 (671)
. .-|+.||.-|++-+...| .-.|-.|-+.+.++++.
T Consensus 452 ~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~ 531 (859)
T KOG1241|consen 452 SALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN 531 (859)
T ss_pred HHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Confidence 0 126777888877766533 45788889999999999
Q ss_pred cCcCcccchHhHHHHHhh----hhc-----CCc----HhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCC-Cc
Q 005891 227 GGDQLVPYYADILGAILP----CIS-----DKE----EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS-EW 292 (671)
Q Consensus 227 ~~~~l~pflp~LLp~LL~----~Ls-----d~~----~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~-~~ 292 (671)
.+++..|-.-++.+.++. +|+ +++ .++...-+.+.+...+.++. ...-+-+.+++.+.+.|.+ .+
T Consensus 532 st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s~~s 610 (859)
T KOG1241|consen 532 STDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFESKRS 610 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcCCcc
Confidence 998887776666666665 222 222 12333333344444444443 1112346788888888876 34
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhh--c---cchHHHHHHHHHhhcc
Q 005891 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAK--D---LQHFRQLVVFLVHNFR 366 (671)
Q Consensus 293 ~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s-~eV~~~~l~lLa~Is~--~---~~~F~~fm~~LL~lf~ 366 (671)
-.+-+.|+..+..+.+..++++..|.+.+.|+|+..|+.-. -.|-..+.-+.++++. + -.|=+.+|..|++.++
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Ls 690 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLS 690 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcc
Confidence 55788999999999999999999999999999999996554 5566677788888882 1 2456778999999887
Q ss_pred cc--chhhhhHHHHHHHHHhccCChHHHHHHHHHhhcc-cCC-hhHHHHHHHHHHHHh
Q 005891 367 VD--NSLLEKRGALIIRRLCVLLDAERVYRELSTILEG-EAD-LDFACTMVQALNLIL 420 (671)
Q Consensus 367 ~d--~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~-~~d-l~F~~~mVq~Ln~iL 420 (671)
+. ++-++. .|...|++|=.. +.| .++.++++-+|+.+-
T Consensus 691 s~~~hR~vKP----------------~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 691 SPNLHRNVKP----------------AILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred Cccccccccc----------------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66 332231 266666666322 222 566777777777776
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.13 E-value=4.7e-08 Score=123.21 Aligned_cols=349 Identities=13% Similarity=0.103 Sum_probs=243.5
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhcc---hhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchh
Q 005891 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRG---DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (671)
Q Consensus 35 ~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~---~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f 110 (671)
++++.-+.-.+..+|..||.++.++++.-.+ .+. -...++.|.+++..++..++..| ..+..+.+..-......
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi--~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG--GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH--HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444445689999999999998853111 111 12457888999988888888877 56655543111000111
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
.-...||.|.+.+.+.++.+|.-++..|.++.... .+....+ ...++.|+++|.+.+.++++.|..+|..++..-.
T Consensus 485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d- 562 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD- 562 (2102)
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-
Confidence 12457999999999999999999999999998743 2333333 1356677779999999999999999988876321
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc-cc---chHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VP---YYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l-~p---flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
...++.++..+.+.++.++..++.-+..++......- .. =..+.+|.+...+.+..+++++.|..+...+
T Consensus 563 ------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL 636 (2102)
T PLN03200 563 ------AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADI 636 (2102)
T ss_pred ------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2355667777888888888888888877776543321 00 0236788888889999999999998777665
Q ss_pred HHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh-Hhhh-hhHHHHHHHHhcCCCCHHHHHHHHH
Q 005891 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VLHF-LNDIFDTLLKALSDPSDEVVLLVLE 342 (671)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~-i~~~-l~~l~p~LL~~LsD~s~eV~~~~l~ 342 (671)
...-.+..+.+-....++.+...+.+.+..+|..+-..|..+......+ .... -.+.+|.|++.|++++++|+..++.
T Consensus 637 ~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ 716 (2102)
T PLN03200 637 FSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC 716 (2102)
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHH
Confidence 5321110011223467788888998888889999999999888654332 2222 3468999999999999999999999
Q ss_pred HHHHHhhcc---chH--HHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHH
Q 005891 343 VHACIAKDL---QHF--RQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVY 393 (671)
Q Consensus 343 lLa~Is~~~---~~F--~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy 393 (671)
.|+.+..+. .-+ ...+..|.++++++..-.++-+.-.+.+||..-+.+.++
T Consensus 717 ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~ 772 (2102)
T PLN03200 717 ALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVL 772 (2102)
T ss_pred HHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHH
Confidence 999999532 112 246778888887776655666677999999998876644
No 26
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.09 E-value=1.3e-07 Score=110.47 Aligned_cols=431 Identities=16% Similarity=0.116 Sum_probs=283.7
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchh
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f 110 (671)
.+.|.+-..-.|.++.||.+++.-+++++++...+.. ...+.+.+..+..|...+||.+| +.+..+.+ +.... .-
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~--~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~-l~~~~-~d 312 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIV--KSEVLPTLIQLLRDDQDSVREAAVESLVSLLD-LLDDD-DD 312 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHH--HhhccHHHhhhhhcchhhHHHHHHHHHHHHHH-hcCCc-hh
Confidence 4555556666899999999999999999998776443 56888889999999999999999 66666555 33221 13
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC
Q 005891 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~ 190 (671)
....+.|.+.+...+.++++|.....|..-+.+..+. ...-++..+.....++|+..++|.++..-...|.......+
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~ 390 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC 390 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence 4568899999999999999999999999998887776 33445555666679999999999999888888887665333
Q ss_pred CCC--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 191 SVD--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 191 ~~d--~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
..+ ...++|.+...+.+.++.+|.....-+.....+.|..= =++.++|..+..+.|..+++|.--..... ..+.+
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~--ti~~llp~~~~~l~de~~~V~lnli~~ls-~~~~v 467 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER--TISELLPLLIGNLKDEDPIVRLNLIDKLS-LLEEV 467 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc--CccccChhhhhhcchhhHHHHHhhHHHHH-HHHhc
Confidence 333 56788999999999999999876665544444444221 26778899999999999999965443221 12222
Q ss_pred CC-CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005891 269 AD-PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (671)
Q Consensus 269 ~~-~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~I 347 (671)
.+ .+-.+--+..++.+.+.-.+.+|..|.+.+..+-.++......++ .+.+-+.+..-+-|...+|+..+...+...
T Consensus 468 ~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~--~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l 545 (759)
T KOG0211|consen 468 NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF--DEKLAELLRTWLPDHVYSIREAAARNLPAL 545 (759)
T ss_pred cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh--hHHHHHHHHhhhhhhHHHHHHHHHHHhHHH
Confidence 21 111233357777777777777899999999988888877764444 445666667778898999999888877777
Q ss_pred hh--c-cchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcc---c--CChhHHHHHHHHHHHH
Q 005891 348 AK--D-LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG---E--ADLDFACTMVQALNLI 419 (671)
Q Consensus 348 s~--~-~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~---~--~dl~F~~~mVq~Ln~i 419 (671)
+. + +-+=...+..++.+..++.-+....-.+=|.-+-..++.|-..+.|-.++.. + .+.+| .....|-.+
T Consensus 546 ~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~--nvak~L~~i 623 (759)
T KOG0211|consen 546 VETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRI--NVAKHLPKI 623 (759)
T ss_pred HHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhh--hHHHHHHHH
Confidence 63 2 2233456667777776652222222222333444555666666666655543 1 35666 444444433
Q ss_pred h---ccchhHHHHHHHHHhcc-CCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHH
Q 005891 420 L---LTSSELSELRDLLKKSL-VNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDK 495 (671)
Q Consensus 420 L---LTs~El~~lR~~L~~~l-~~~~~~~lF~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~~~~e~~~~~l~q~d~ 495 (671)
+ ..+..=..++..|-... ++.-++..|..+ ++..+.++..| ..+.+.+.+|.+.
T Consensus 624 ~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~----------a~~~i~l~~~~------------~~~d~~~~~~~~a 681 (759)
T KOG0211|consen 624 LKLLDESVRDEEVLPLLETLSSDQELDVRYRAIL----------AFGSIELSRLE------------SSLDVRDKKQLIA 681 (759)
T ss_pred HhhcchHHHHHHHHHHHHHhccCcccchhHHHHH----------HHHHHHHHHHh------------hhHHHHHHHHHHH
Confidence 2 22222223344443311 233344555444 56666665554 2445555666555
Q ss_pred HH
Q 005891 496 LI 497 (671)
Q Consensus 496 Lv 497 (671)
+-
T Consensus 682 ~~ 683 (759)
T KOG0211|consen 682 FL 683 (759)
T ss_pred HH
Confidence 43
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.09 E-value=4.7e-09 Score=106.70 Aligned_cols=197 Identities=19% Similarity=0.224 Sum_probs=132.0
Q ss_pred hHHHHHhcc----CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccc
Q 005891 33 IVPPVLNSF----SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESD 108 (671)
Q Consensus 33 Ii~pvL~~l----~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~ 108 (671)
-+..+.+.| .|.||..|..|.+.+..+++.... ..+.+.+++.
T Consensus 4 ~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~--~~~~~~~~~~------------------------------- 50 (228)
T PF12348_consen 4 EFEEILAALEKKESESDWEERVEALQKLRSLIKGNAP--EDFPPDFVEC------------------------------- 50 (228)
T ss_dssp --GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-------HHHHHH-------------------------------
T ss_pred hHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCc--cccHHHHHHH-------------------------------
Confidence 344455556 889999999999998888764300 0011111111
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
+..+++.+...+.+.++.+-..++..+..+....+..+-+|++.+++.|++.++|+++.||..|..+|..+++.+.
T Consensus 51 ---l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~- 126 (228)
T PF12348_consen 51 ---LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS- 126 (228)
T ss_dssp ---HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--
T ss_pred ---HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-
Confidence 1223344444455555566667777777777777778889999999999999999999999999999999997442
Q ss_pred CCCCChHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---cCccc--chHhHHHHHhhhhcCCcHhHHHHHHHHHH
Q 005891 189 SPSVDYGRM-AEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVP--YYADILGAILPCISDKEEKIRVVARETNE 262 (671)
Q Consensus 189 ~~~~d~~~i-I~iLl~~~~s~d~~irl~al~WI~~~~~l~~---~~l~p--flp~LLp~LL~~Lsd~~~eIR~~A~~~n~ 262 (671)
-...+ .+.+...+.++++.+|..++.|+..+++-.+ ..+-. +++.+++.+.+++.|+++++|+.|.++..
T Consensus 127 ----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 127 ----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp ----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 13456 7888888999999999999999999998877 33332 46899999999999999999999999999
Q ss_pred HHHHhcCC
Q 005891 263 ELRAIKAD 270 (671)
Q Consensus 263 ~L~~~i~~ 270 (671)
.+.+.+++
T Consensus 203 ~l~~~~~~ 210 (228)
T PF12348_consen 203 ALYSHFPE 210 (228)
T ss_dssp HHHHHH-H
T ss_pred HHHHHCCH
Confidence 99887764
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=99.08 E-value=1.3e-06 Score=103.03 Aligned_cols=317 Identities=15% Similarity=0.130 Sum_probs=188.3
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHH---
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD--- 102 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKd--- 102 (671)
....+++++++.+|+.|+++.||..|+-+++.+-+.....+.. ..+.+.|.+++.|+++.|...| ..|..+...
T Consensus 135 ~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 135 SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence 5688899999999999999999999999988887643332211 1345667778899999999888 544443321
Q ss_pred -------h-------hccc------------------chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 005891 103 -------I-------VTES------------------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (671)
Q Consensus 103 -------I-------v~e~------------------~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li 150 (671)
. +.+. +......++..+..+++..|+.|-..++..+..+....+.++.
T Consensus 213 ~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~ 292 (746)
T PTZ00429 213 KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI 292 (746)
T ss_pred hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH
Confidence 0 1110 1223467888888889999999998888888777654433433
Q ss_pred hchH-HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 005891 151 GFLP-DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (671)
Q Consensus 151 ~~Lp-~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~ 229 (671)
.... .+-..|..+ ..++++||-.+...+..++..-+. + +..-+....-...++.+ ||...++.+..++.-..
T Consensus 293 ~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~---l-f~~~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~N- 365 (746)
T PTZ00429 293 ERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPN---L-LRTNLDSFYVRYSDPPF-VKLEKLRLLLKLVTPSV- 365 (746)
T ss_pred HHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHH---H-HHHHHHhhhcccCCcHH-HHHHHHHHHHHHcCccc-
Confidence 3322 222444444 456788998888777777663321 1 11112222222333333 67777777655543222
Q ss_pred CcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 005891 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (671)
Q Consensus 230 ~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~ 309 (671)
...|+.-+.....+.+.+++..+.++.+.+..-+.. .....++.|.+.+.+.... ...++.-+..+.++
T Consensus 366 -----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~-----~a~~cV~~Ll~ll~~~~~~-v~e~i~vik~Ilrk 434 (746)
T PTZ00429 366 -----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS-----VAPDCANLLLQIVDRRPEL-LPQVVTAAKDIVRK 434 (746)
T ss_pred -----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHH
Confidence 456677777777777777777777776666543321 2345666666555543322 23456666666677
Q ss_pred ChhhHhhhhhHHHHHHHHhc-CC--CCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccc
Q 005891 310 HRTEVLHFLNDIFDTLLKAL-SD--PSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDN 369 (671)
Q Consensus 310 ~p~~i~~~l~~l~p~LL~~L-sD--~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~ 369 (671)
+|+.. +++.|+..+ .| .+++.+...+|+++++++.-..-..++..+++.|..+.
T Consensus 435 yP~~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~ 491 (746)
T PTZ00429 435 YPELL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHE 491 (746)
T ss_pred CccHH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCC
Confidence 76542 344444433 11 34556666677777766421122334444445554443
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=99.07 E-value=1.1e-06 Score=103.64 Aligned_cols=391 Identities=14% Similarity=0.139 Sum_probs=251.1
Q ss_pred ChhHHHHHHHHHHHHHH---HHHHhhhhh-HHhHhhhHHHHHhccCCCC-HHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Q 005891 1 MHKWYSFLFEIIVEQFL---LYADLFFYS-ETILQQIVPPVLNSFSDQD-SRVRYYACEALYNIAKVVRGDFIIFFNQIF 75 (671)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~yl~~Ii~pvL~~l~D~d-~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf 75 (671)
|.-++-++-|-|+.++- .-.+++... ..-..+|. ..|..++ .++|.+....++++.. +.++ ..+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~kge~~ELr----~~L~s~~~~~kk~alKkvIa~mt~--G~Dv----S~LF 70 (746)
T PTZ00429 1 MENFLRKARERIQRKLEETKTGSKYFAQTRRGEGAELQ----NDLNGTDSYRKKAAVKRIIANMTM--GRDV----SYLF 70 (746)
T ss_pred ChhHHHHHHHHHHHHhhcCCCccccccccccchHHHHH----HHHHCCCHHHHHHHHHHHHHHHHC--CCCc----hHHH
Confidence 55667777788887753 112222110 00112232 3333434 4455555556555542 2233 3567
Q ss_pred HHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchH
Q 005891 76 DALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP 154 (671)
Q Consensus 76 ~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp 154 (671)
+...++++.++..+|+-. -.+-+..+ ...-..-..+..++.=+.++||.+|-.++-.+.. +...+ .++
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~-----~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~---Ir~~~---i~e 139 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTAR-----LQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMC---IRVSS---VLE 139 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcc-----cChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc---CCcHH---HHH
Confidence 777788888899999877 33333322 1111234557888888889999999998765544 44334 445
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc
Q 005891 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (671)
Q Consensus 155 ~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~-d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p 233 (671)
.++..+.+.+.|+++-||+.|.-|+..+-+.-+ +. .-..+++.+.+.+.++|+.+...|+..+.++.+..+..+ .
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~ 215 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-E 215 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-H
Confidence 557777789999999999999998888765332 22 234677888888899999999999999999887766442 2
Q ss_pred chHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 005891 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE 313 (671)
Q Consensus 234 flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~ 313 (671)
.....+..++..+.+-++=-+- .+.+.+.+.. +.+.-+...+++.+..++.+.+..+.++|..-+..+...++.+
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi---~IL~lL~~y~--P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQL---YILELLAAQR--PSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHH---HHHHHHHhcC--CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 3444445555555443322111 2223333322 2233446789999999999999999999999999887765333
Q ss_pred -HhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHH
Q 005891 314 -VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER 391 (671)
Q Consensus 314 -i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~ 391 (671)
+......+-+.++.. ...+++++..+++.+..|.. ....|.+.+..+.-++.+. .-...+.=-|+-.||..=|.+.
T Consensus 291 ~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp-~yIK~~KLeIL~~Lane~Nv~~ 368 (746)
T PTZ00429 291 LIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDP-PFVKLEKLRLLLKLVTPSVAPE 368 (746)
T ss_pred HHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCc-HHHHHHHHHHHHHHcCcccHHH
Confidence 333334455556544 55788999999988877774 3445665544443344433 3345554448888998889889
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhccch
Q 005891 392 VYRELSTILEGEADLDFACTMVQALNLILLTSS 424 (671)
Q Consensus 392 Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~ 424 (671)
|.++|.+-.. +.|.+|+..+|+.+..+-+.-+
T Consensus 369 IL~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 369 ILKELAEYAS-GVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhCh
Confidence 9988888775 5788999999998887766544
No 30
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.07 E-value=4.6e-10 Score=99.68 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=81.3
Q ss_pred HHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCC
Q 005891 89 VQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS 167 (671)
Q Consensus 89 Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~ 167 (671)
.|+|+ ..|......+... ....++.++|++..++.|+++.||+++++++.++.++.+.+++.|+++++++|++.+.|+
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46677 6666665544443 245689999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHH
Q 005891 168 SHEIRQQADSALWEFLQ 184 (671)
Q Consensus 168 ~~eVR~~a~~~L~~ll~ 184 (671)
+++||.+| +.|+++++
T Consensus 81 d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 81 DENVRSAA-ELLDRLLK 96 (97)
T ss_pred chhHHHHH-HHHHHHhc
Confidence 99999998 77888775
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.07 E-value=7.3e-09 Score=105.31 Aligned_cols=191 Identities=22% Similarity=0.283 Sum_probs=132.2
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-----chhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP-----DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip-----~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
++.+.+.|...-.+.||..|.-++.-+..+..-. ..++..++..++.++.+.+.|....|-+.|+.++..+....
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667899999999999888775433 23355556666667777777777667676666666666544
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHH
Q 005891 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (671)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (671)
+..+-||.+.++|.+++.++++..-||+.|.++...+.+
T Consensus 85 -----------------------------------------~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~ 123 (228)
T PF12348_consen 85 -----------------------------------------GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIE 123 (228)
T ss_dssp -----------------------------------------GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHT
T ss_pred -----------------------------------------hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999888876
Q ss_pred hcCCCCCCCChHhH-HHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHhh--hhhHHHHHHHHhcCCCCHHHHHHH
Q 005891 267 IKADPADGFDVGPI-LSIATRQLSSEWEATRIEALHWISTLLNRHR---TEVLH--FLNDIFDTLLKALSDPSDEVVLLV 340 (671)
Q Consensus 267 ~i~~~~~~~dl~~i-l~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p---~~i~~--~l~~l~p~LL~~LsD~s~eV~~~~ 340 (671)
.+.- ...+ ++.+.....+.+...|..++.|+..+.+..+ ..+.. .++.+.+.+.++++|++++||..+
T Consensus 124 ~~~~------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~A 197 (228)
T PF12348_consen 124 SCSY------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAA 197 (228)
T ss_dssp TS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred HCCc------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHH
Confidence 6540 2355 7788888999999999999999999999999 44433 248899999999999999999999
Q ss_pred HHHHHHHhh
Q 005891 341 LEVHACIAK 349 (671)
Q Consensus 341 l~lLa~Is~ 349 (671)
-.++..+.+
T Consensus 198 r~~~~~l~~ 206 (228)
T PF12348_consen 198 RECLWALYS 206 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
No 32
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.03 E-value=4.7e-08 Score=123.21 Aligned_cols=348 Identities=17% Similarity=0.155 Sum_probs=250.3
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhH--HHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f--~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
..+|++...+..++.++|.-|+-++.|++.. ..++...+ ...++.|++++.+++..+|..| ..|.++++. ..
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~----~d 562 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT----AD 562 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc----cc
Confidence 5789999999999999999999999999852 22222222 2578889999999998888766 777777552 11
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch-hHHhc---hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-DMLGF---LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~-~li~~---Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
+..++.+.+.+...++.++..++..+..+.+..+. +...- -+.-++.|.+++..+++++++.|+.+|..+..
T Consensus 563 ----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 563 ----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred ----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 22457788888889999999999888777554433 22211 13567778889999999999999999988875
Q ss_pred HhhcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc-ccch-HhHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 185 EIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYY-ADILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 185 ~I~~~~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l-~pfl-p~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
.-.... .+-..+.+|.++..+.+.+..+|..+...|..+..-....- ..+. ...+|.+...+.+.+.++++.|..+.
T Consensus 639 ~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~AL 718 (2102)
T PLN03200 639 SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCAL 718 (2102)
T ss_pred CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 221100 01245678999999999999999999988887776333221 1122 34788899999999999999998887
Q ss_pred HHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-h-h--hhhHHHHHHHHhcCCCCHHHH
Q 005891 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV-L-H--FLNDIFDTLLKALSDPSDEVV 337 (671)
Q Consensus 262 ~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i-~-~--~l~~l~p~LL~~LsD~s~eV~ 337 (671)
..+...... ...+--...++.|.+.+.+.+...|..|...|..|..+.+.+- + . .-.+.+..|+..|+-.+.+++
T Consensus 719 anLl~~~e~-~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~ 797 (2102)
T PLN03200 719 ANLLSDPEV-AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSS 797 (2102)
T ss_pred HHHHcCchH-HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchh
Confidence 777654321 0011113568899999999999999999999999999987432 2 2 234577889999988887776
Q ss_pred HH--HHHHHHHHhh---ccc----hHHH------HHHHHHhhccccchhhhhHHHHHHHHHhccCCh
Q 005891 338 LL--VLEVHACIAK---DLQ----HFRQ------LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (671)
Q Consensus 338 ~~--~l~lLa~Is~---~~~----~F~~------fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (671)
.. ++++|+.++. +.. -|.- =+..|...+......+++|+--|+-+||.--+.
T Consensus 798 ~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~ 864 (2102)
T PLN03200 798 ATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPV 864 (2102)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChh
Confidence 65 8888887772 111 1222 245555666778899999998999999987654
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.96 E-value=3.2e-07 Score=104.50 Aligned_cols=333 Identities=17% Similarity=0.242 Sum_probs=225.0
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhh--HHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIF--FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~--f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
.+.+.+.+..++..+++.||..||..+.+++..-.+ .... =+++++.+..++.|+|.+|.+.| ..|.++.+ .
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~----~ 149 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS----H 149 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC----C
Confidence 577888999999999999999999998887753222 1111 25899999999999999998888 56555554 1
Q ss_pred cchhhhhhh-----HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHH--HHHHHHHhcCCCChHHHHHHHHHH
Q 005891 107 SDQFSIEEF-----IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD--FLDGLFNMLSDSSHEIRQQADSAL 179 (671)
Q Consensus 107 ~~~f~L~~f-----IP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~--fL~gLf~lL~D~~~eVR~~a~~~L 179 (671)
. ..++.+ ++.|...+...|+-+|.-+.+.+..+.+..+. ...+.-. +++.+.+.+.|.+.=||..|.+.+
T Consensus 150 ~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~-~~~~~~~sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 150 P--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE-AAEAVVNSGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred c--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH-HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 1 123333 88888888877999999899988888777654 3444444 888888899998888999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHhcCCC--CH-HHHHH---HHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhH
Q 005891 180 WEFLQEIKNSPSVDYGRMAEILVQRAASP--DE-FTRLT---AITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI 253 (671)
Q Consensus 180 ~~ll~~I~~~~~~d~~~iI~iLl~~~~s~--d~-~irl~---al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eI 253 (671)
.++.+.-.......-..+++.|...+.+. |+ ...+. .+.....+....+..+..-.|.++..+..++...++..
T Consensus 227 ~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~ 306 (503)
T PF10508_consen 227 SELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTI 306 (503)
T ss_pred HHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 99886111000001134566666655443 22 11111 12333444444555565567899999998889999999
Q ss_pred HHHHHHHHHHHHHhcCC-----CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh----hHhhhhhHHHH-
Q 005891 254 RVVARETNEELRAIKAD-----PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT----EVLHFLNDIFD- 323 (671)
Q Consensus 254 R~~A~~~n~~L~~~i~~-----~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~----~i~~~l~~l~p- 323 (671)
+.+|-++.+.+...... ...+-.+..++........+...+.|+++++.+..+....++ ++....+..|.
T Consensus 307 ~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 307 REVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYES 386 (503)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 99999888754321100 011223567777777777787888999999999999765443 33333333322
Q ss_pred --------HHHHhcCCCCHHHHHHHHHHHHHHhhcc---chH---HHHHHHHHhhccccch
Q 005891 324 --------TLLKALSDPSDEVVLLVLEVHACIAKDL---QHF---RQLVVFLVHNFRVDNS 370 (671)
Q Consensus 324 --------~LL~~LsD~s~eV~~~~l~lLa~Is~~~---~~F---~~fm~~LL~lf~~d~~ 370 (671)
.++..++.|=|++|..++.+|..++... ..+ ..|++-|+.+-....|
T Consensus 387 ~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K 447 (503)
T PF10508_consen 387 LSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTK 447 (503)
T ss_pred hcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCH
Confidence 5677788888999999999999998421 122 2377777776644433
No 34
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.96 E-value=1.3e-06 Score=96.61 Aligned_cols=330 Identities=13% Similarity=0.097 Sum_probs=222.8
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCch-HHHHHH-HHHHHHHHHhhccc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA-NVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~-~Vr~gA-~~LdrllKdIv~e~ 107 (671)
-+++..-.++.++.+++|.-..|+..+..|+..--.. ..|++++..+..-+.|.+| ++|..+ ..+...|+ ++.
T Consensus 92 k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~--~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce---s~~ 166 (858)
T COG5215 92 KEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPN--SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCE---SEA 166 (858)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcc--ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhh---ccC
Confidence 4567788899999999999999999998888642222 2388889998888888876 555555 34444333 111
Q ss_pred chh----hhhhhHHHHHHhh-cCCCHHHHHHHHHHHHH-hhcCCchh-HHhchHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005891 108 DQF----SIEEFIPLLRERM-NVLNPYVRQFLVGWITV-LDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (671)
Q Consensus 108 ~~f----~L~~fIP~L~e~i-~~~np~vR~~alswL~~-L~~ip~~~-li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~ 180 (671)
++. +=.-++-...--. ..++..+|..++.++.. +.-+-+.= --.--+-|++..+..-.-++.++..+|--||.
T Consensus 167 Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 167 PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHH
Confidence 100 0011111111111 23677999999988875 22221110 00112335666667777789999999999999
Q ss_pred HHHHHhhcCCCCChHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHhh--cCcCcccc---------------hHhHHHHH
Q 005891 181 EFLQEIKNSPSVDYGRMA-EILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPY---------------YADILGAI 242 (671)
Q Consensus 181 ~ll~~I~~~~~~d~~~iI-~iLl~~~~s~d~~irl~al~WI~~~~~l--~~~~l~pf---------------lp~LLp~L 242 (671)
++...--+-....+++.+ .+....+.+++++++..|+++.+.+++- .+.--..| ...++|.+
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 887633210001122222 2334567889999999999966556552 11111122 34588888
Q ss_pred hhhhcCC--c-----HhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhH
Q 005891 243 LPCISDK--E-----EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEV 314 (671)
Q Consensus 243 L~~Lsd~--~-----~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~-~p~~i 314 (671)
|+.+... + =++..+|..|.+.+.+.+++ .-+.+++.-+.+.+.+++|..|++|...++-+.++ |..-.
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~l 402 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCL 402 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHH
Confidence 8887632 2 25888888999888888775 33567888999999999999999999999987776 55556
Q ss_pred hhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHhhcccc
Q 005891 315 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVD 368 (671)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-------~~~~F~~fm~~LL~lf~~d 368 (671)
.++.++.+|.++..++|+.--|...+.|++++|++ ...|+...+...+.-+-+.
T Consensus 403 T~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~ 463 (858)
T COG5215 403 TKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC 463 (858)
T ss_pred HhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc
Confidence 78999999999999999999999999999999994 4677777666666654443
No 35
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.90 E-value=4.8e-06 Score=94.46 Aligned_cols=327 Identities=14% Similarity=0.095 Sum_probs=239.2
Q ss_pred HHHHHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc-hh-hhhHHHHHHHHHHhhcCCchHHHHH
Q 005891 15 QFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DF-IIFFNQIFDALCKLSADSDANVQSA 92 (671)
Q Consensus 15 ~~~~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~-~i-l~~f~eIf~~L~kL~~D~d~~Vr~g 92 (671)
.+..+|+++.- .+++..++.-+.|.....|..+.+.+..|+...+. ++ ..--..+++++|-.++..+.++.--
T Consensus 704 ttv~ia~KvG~-----~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vm 778 (1172)
T KOG0213|consen 704 TTVEIAAKVGS-----DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVM 778 (1172)
T ss_pred HHHHHHHHhCc-----hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhh
Confidence 44445555544 46888888899999999999999999888765442 11 1224578888887776555444311
Q ss_pred HHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc----hhHHhchHHHHHHHHHhcCCCC
Q 005891 93 AHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD----IDMLGFLPDFLDGLFNMLSDSS 168 (671)
Q Consensus 93 A~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~----~~li~~Lp~fL~gLf~lL~D~~ 168 (671)
-..+...++.+.... ...++.++..+..+++.+.|.||+-+...+.-++.+.. ..++.|+..+ |...++...
T Consensus 779 l~gfg~V~~~lg~r~-kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv---LyEylgeey 854 (1172)
T KOG0213|consen 779 LLGFGTVVNALGGRV-KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV---LYEYLGEEY 854 (1172)
T ss_pred hhhHHHHHHHHhhcc-ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH---HHHhcCccc
Confidence 123344444444432 23488889999999999999999998887776655543 3377777665 457889999
Q ss_pred hHHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhh
Q 005891 169 HEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCI 246 (671)
Q Consensus 169 ~eVR~~a~~~L~~ll~~I~~~-~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~L 246 (671)
+||--....++..+...++-. ...-+..++|.|.-.+.+.++-++..++..+..++.-+++-+-+ =.-+|-=.++..|
T Consensus 855 pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL 934 (1172)
T KOG0213|consen 855 PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL 934 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH
Confidence 999887777777777766532 12236778888888888889999999999999999887752210 1234555677778
Q ss_pred cCCcHhHHHHHHHHHHHHHHhcCCC-------------------CC--CC-------ChHhHHHHHHHhcCCCcHHHHHH
Q 005891 247 SDKEEKIRVVARETNEELRAIKADP-------------------AD--GF-------DVGPILSIATRQLSSEWEATRIE 298 (671)
Q Consensus 247 sd~~~eIR~~A~~~n~~L~~~i~~~-------------------~~--~~-------dl~~il~~L~~~L~~~~~~tRia 298 (671)
.....+||..|.+..+-+.+.++.. .. ++ -.=.++++|.....-++..+.-.
T Consensus 935 kahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 935 KAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred HHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHh
Confidence 8888999999988887777666520 00 01 11267788888888888888999
Q ss_pred HHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005891 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (671)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~ 350 (671)
.|..+.++.+..++--..|.-.+.|.|-..|.|.++-=|+.++.++..++-|
T Consensus 1015 VLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 9999999999998888899999999999999999999999999999999843
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.87 E-value=5.2e-06 Score=94.71 Aligned_cols=258 Identities=15% Similarity=0.205 Sum_probs=184.7
Q ss_pred HHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--H
Q 005891 78 LCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--P 154 (671)
Q Consensus 78 L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p 154 (671)
++.++++.+.+.-+.+ +.|++++++... ....+.+.|.|...++.++|.||..++..+..+....+.. ...+ +
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~---~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~-~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP---DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGA-AQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHH-HHHhcCc
Confidence 4444544444333344 678888775543 2348899999999999999999999999998877665432 2222 5
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 005891 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRM-----AEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (671)
Q Consensus 155 ~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~i-----I~iLl~~~~s~d~~irl~al~WI~~~~~l~~~ 229 (671)
++++.+..++.|++.+|.+.|.++|..+.+.- ..++.+ ++.|...+..+++.+|..+++.+..+....++
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-----~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-----EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-----hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence 67888888999999999999999888887521 123333 77777777777889998888877777766654
Q ss_pred CcccchH--hHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCCh---HhHHHHHHHhcCCCcHHHH------HH
Q 005891 230 QLVPYYA--DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWEATR------IE 298 (671)
Q Consensus 230 ~l~pflp--~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl---~~il~~L~~~L~~~~~~tR------ia 298 (671)
.+ .+.- ++++.++..+.++|.-++..|.+....+.. . ..+..| ..+++.|...+.+.....| ..
T Consensus 194 ~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~---~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g 268 (503)
T PF10508_consen 194 AA-EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-T---PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPG 268 (503)
T ss_pred HH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-C---hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhh
Confidence 33 3333 489999999999888888888887777655 1 112222 3566666666543322222 22
Q ss_pred HHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
.+...+.++...|.++....+.++..+...+...++..+..|+.+++.|++
T Consensus 269 ~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 269 RMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 336777888888888888888888888888888999999999999999995
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.8e-06 Score=96.51 Aligned_cols=392 Identities=16% Similarity=0.166 Sum_probs=248.8
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-chh-hhhHHHHHHHHHHhhc-CCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDF-IIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~-~~i-l~~f~eIf~~L~kL~~-D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
.+..+....-.+..-+.+|.+++-.+-..-+ ..+ ......++|.+...+. +..+.++--| -+|......--.....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4555566655555557777767655532211 111 1112367788887774 5556665444 5666543311111112
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc--hHHHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHH
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF--LPDFLDGLFNMLSDSSH--EIRQQADSALWEFLQE 185 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~--Lp~fL~gLf~lL~D~~~--eVR~~a~~~L~~ll~~ 185 (671)
+.-..-+|.+..++++++..||.-++..+.+++.-.+ ++-.| =...+++|..++..+++ -+|.++ -+|..|++.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~-~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~t-W~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP-DCRDYVLSCGALDPLLRLLNKSDKLSMLRNAT-WTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh-HHHHHHHhhcchHHHHHHhccccchHHHHHHH-HHHHHHHcC
Confidence 3334567889999999999999999999998865432 22222 23347777778888775 666665 678888863
Q ss_pred hhcCCCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHH
Q 005891 186 IKNSPSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (671)
Q Consensus 186 I~~~~~~d---~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~ 262 (671)
- .|... +..++|+|...+++.|+++...|+-.++.+ +|..+|.=.+.
T Consensus 226 k--~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyL-----------------------sdg~ne~iq~v----- 275 (514)
T KOG0166|consen 226 K--NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYL-----------------------TDGSNEKIQMV----- 275 (514)
T ss_pred C--CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------------------hcCChHHHHHH-----
Confidence 3 24333 567788888888888888876666555432 22221111111
Q ss_pred HHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcC-CCCHHHHHHH
Q 005891 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALS-DPSDEVVLLV 340 (671)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~Ls-D~s~eV~~~~ 340 (671)
+. ..+++.|...|.+....++..||..++-+.-+........ ..+.+|.|...|+ .+.+.++..+
T Consensus 276 -----i~--------~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA 342 (514)
T KOG0166|consen 276 -----ID--------AGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEA 342 (514)
T ss_pred -----HH--------ccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence 10 2677888888888888889999999999888876554332 4468899999998 5666689999
Q ss_pred HHHHHHHhhcc-chHHH-----HHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHH--------HHHHHhhcccCCh
Q 005891 341 LEVHACIAKDL-QHFRQ-----LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVY--------RELSTILEGEADL 406 (671)
Q Consensus 341 l~lLa~Is~~~-~~F~~-----fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy--------~~la~iL~~~~dl 406 (671)
||+++.|..+. .+-+. ++..|++.+.+..--++.-+...|-++|..=++|.|+ +.|++.| .-.|.
T Consensus 343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D~ 421 (514)
T KOG0166|consen 343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPDV 421 (514)
T ss_pred HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCCh
Confidence 99999999543 23332 6667777776665555666788999999988877554 5666777 55788
Q ss_pred hHHHHHHHHHHHHhccchhHHHHH-HHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhcc
Q 005891 407 DFACTMVQALNLILLTSSELSELR-DLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEE 483 (671)
Q Consensus 407 ~F~~~mVq~Ln~iLLTs~El~~lR-~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~~~~ 483 (671)
+.+......|.+||-..+-....+ +.+-..++.-+|.+--+.|-. |-. -+=|+.||.||.+|-..
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~---hen---------~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQS---HEN---------EEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhc---ccc---------HHHHHHHHHHHHHhcCC
Confidence 889999999999988776555433 333322222233222222211 111 13489999999987543
No 38
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.82 E-value=5.4e-06 Score=92.37 Aligned_cols=330 Identities=20% Similarity=0.254 Sum_probs=212.7
Q ss_pred HHhHhhhHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHhcchh-----hhhHHH-HHHHHHHhhcCCc---hHHHHH
Q 005891 27 ETILQQIVPPVLNSFS-----DQDSRVRYYACEALYNIAKVVRGDF-----IIFFNQ-IFDALCKLSADSD---ANVQSA 92 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~-----D~d~rVR~~A~eaL~nI~Kv~~~~i-----l~~f~e-If~~L~kL~~D~d---~~Vr~g 92 (671)
...++.+++.++.-+. ..+...-..++++++++.+...... ..|+.+ +++.+.+.+.+.. .+....
T Consensus 33 ~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~ 112 (415)
T PF12460_consen 33 PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDR 112 (415)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchH
Confidence 3445566665554443 2266677777899999865543222 344544 7777776653221 110111
Q ss_pred H-HHHHHHHHHhhcccchhh----hhhhHHHHH-----Hhhc-CCC---HHHHHHHHHHHHHhhcCCchhHHhchHHHHH
Q 005891 93 A-HLLDRLVKDIVTESDQFS----IEEFIPLLR-----ERMN-VLN---PYVRQFLVGWITVLDSVPDIDMLGFLPDFLD 158 (671)
Q Consensus 93 A-~~LdrllKdIv~e~~~f~----L~~fIP~L~-----e~i~-~~n---p~vR~~alswL~~L~~ip~~~li~~Lp~fL~ 158 (671)
. +.+.+++.-++...+.-. ++.+...+. ..+. ..+ +.-+..++-.-..+.++++.--++...+++.
T Consensus 113 ~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~ 192 (415)
T PF12460_consen 113 VLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQ 192 (415)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHH
Confidence 2 455666666665432222 444444433 0111 111 1333444444566777776655568888999
Q ss_pred HHHHhcCC-CChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHHHhhcCcCccc
Q 005891 159 GLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA-ASPD---EFTRLTAITWINEFVKLGGDQLVP 233 (671)
Q Consensus 159 gLf~lL~D-~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~-~s~d---~~irl~al~WI~~~~~l~~~~l~p 233 (671)
.+.++... .++.+|..+.+++..++...+. +-++++++..+.... ...+ .....+.+.||..-.-+-+. |
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~---~ 267 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWPD--DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH---P 267 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC---c
Confidence 98887655 4589999999999988865432 124777887777766 2222 23455667799876655453 4
Q ss_pred chHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC---CCC---------CChHhHHHHHHHhcCCCcHHHHHHHHH
Q 005891 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADP---ADG---------FDVGPILSIATRQLSSEWEATRIEALH 301 (671)
Q Consensus 234 flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~---~~~---------~dl~~il~~L~~~L~~~~~~tRiaaL~ 301 (671)
....++..++..+++ +++...|.++.+-++.-..+. ... .-|..+++.+.+.+...+...|...+.
T Consensus 268 ~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 268 LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 567777778888877 667777777776665432211 111 125788999999998777779999999
Q ss_pred HHHHHHhhChhhH-hhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-c----chHHHHHHHHHh
Q 005891 302 WISTLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-L----QHFRQLVVFLVH 363 (671)
Q Consensus 302 WL~~L~~~~p~~i-~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~-~----~~F~~fm~~LL~ 363 (671)
.|..+.+..|.++ .+++++++|.|+.+|+-++++|+..+++++..+..+ . +|.+.++..|++
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999886 689999999999999999999999999999998843 2 345555555554
No 39
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.82 E-value=4.9e-07 Score=100.58 Aligned_cols=364 Identities=15% Similarity=0.163 Sum_probs=226.8
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT- 105 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~- 105 (671)
-+|+..++..+-.|+.|.+..||--++.++..+++.+..-....|+++|..|.+.++.. ++..|..++|....
T Consensus 353 l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~h------rgk~l~sfLkA~g~i 426 (975)
T COG5181 353 LSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQH------RGKELVSFLKAMGFI 426 (975)
T ss_pred HhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhc------CCchHHHHHHHhccc
Confidence 46888888999999999999999999999999999988877788999999998776543 22345556663311
Q ss_pred ------ccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH----hchHHHHH-----------------
Q 005891 106 ------ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML----GFLPDFLD----------------- 158 (671)
Q Consensus 106 ------e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li----~~Lp~fL~----------------- 158 (671)
|-........+..+...+.+++..-+.-++-....-+++-+.+-- ...|+|+.
T Consensus 427 iplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v 506 (975)
T COG5181 427 IPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQV 506 (975)
T ss_pred cccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhccccccccee
Confidence 111233445566666667777766666555555444444433321 23333332
Q ss_pred ------------------HHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCC---hHHHHHHHHHhcCCCCHHHH--HH
Q 005891 159 ------------------GLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPDEFTR--LT 215 (671)
Q Consensus 159 ------------------gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d---~~~iI~iLl~~~~s~d~~ir--l~ 215 (671)
.+...++|+..--|+++..+.++....++.. ++| -+.++.-++...++++.... +.
T Consensus 507 ~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~-~~dErleerl~d~il~Afqeq~~t~~~il~ 585 (975)
T COG5181 507 VLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL-GFDERLEERLYDSILNAFQEQDTTVGLILP 585 (975)
T ss_pred ehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc-cccHHHHHHHHHHHHHHHHhccccccEEEe
Confidence 2333444444445555444444444444321 111 12233333333333222111 11
Q ss_pred HHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHH
Q 005891 216 AITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEAT 295 (671)
Q Consensus 216 al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~t 295 (671)
+.... .--.+.-..||++.|+..+|+.+....|++|..|.+..+.+...++..++.-.+...=.+|-+.+..+..++
T Consensus 586 ~f~tv---~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEv 662 (975)
T COG5181 586 CFSTV---LVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEV 662 (975)
T ss_pred cccce---eeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHH
Confidence 10000 001123347899999999999999999999999999998887776643433334455567888888777777
Q ss_pred HHHHHHHHHHHHhhCh-hhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccch------HHHHHHHHHhhcccc
Q 005891 296 RIEALHWISTLLNRHR-TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH------FRQLVVFLVHNFRVD 368 (671)
Q Consensus 296 RiaaL~WL~~L~~~~p-~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~------F~~fm~~LL~lf~~d 368 (671)
-=..|.++..++.... ..|.|-..+++|.|.+-|......|+..+..+++.|+.+.+. .-.+--+|+++++.-
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~ 742 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW 742 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh
Confidence 7777788887777653 457788999999999999999999999999999999964322 333555777777666
Q ss_pred chhhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005891 369 NSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (671)
Q Consensus 369 ~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (671)
+|-....++--+--+....+|..|..+|-+=|
T Consensus 743 nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnL 774 (975)
T COG5181 743 NKEIRRNATETFGCISRAIGPQDVLDILLNNL 774 (975)
T ss_pred hHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcc
Confidence 55443333333333444455544444444333
No 40
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.80 E-value=2.1e-05 Score=87.46 Aligned_cols=336 Identities=17% Similarity=0.164 Sum_probs=222.7
Q ss_pred HHhHhhhHHHH-HhccCCCCHHHHHHHHHHHHHHHHH-hcchh-hhh---------------HHHHHHHHHHhhcC----
Q 005891 27 ETILQQIVPPV-LNSFSDQDSRVRYYACEALYNIAKV-VRGDF-IIF---------------FNQIFDALCKLSAD---- 84 (671)
Q Consensus 27 ~~yl~~Ii~pv-L~~l~D~d~rVR~~A~eaL~nI~Kv-~~~~i-l~~---------------f~eIf~~L~kL~~D---- 84 (671)
..|++.-+-.+ .+.+..++.+|.-.|.|-...|+.- ..++. ..+ ..+++|.|.+++..
T Consensus 257 ~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed 336 (858)
T COG5215 257 QSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGED 336 (858)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCC
Confidence 45666655444 5667888999998888877666532 11111 122 34678887777732
Q ss_pred ---CchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-HHhchHHHHHH
Q 005891 85 ---SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDG 159 (671)
Q Consensus 85 ---~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~-li~~Lp~fL~g 159 (671)
.+-++-.+| ..|.-... .+ ++.-+.-.+..+.+-++.++|.-|..++-....+-.-|..+ +..+.|..+++
T Consensus 337 ~~~DdWn~smaA~sCLqlfaq-~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~ 412 (858)
T COG5215 337 YYGDDWNPSMAASSCLQLFAQ-LK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPG 412 (858)
T ss_pred ccccccchhhhHHHHHHHHHH-Hh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHH
Confidence 234555555 33322111 11 22234446667777888999999999998888776666655 66789999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHhhcC--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHh-h------cCc
Q 005891 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWI-NEFVK-L------GGD 229 (671)
Q Consensus 160 Lf~lL~D~~~eVR~~a~~~L~~ll~~I~~~--~~~d~~~iI~iLl~~~~s~d~~irl~al~WI-~~~~~-l------~~~ 229 (671)
+.++++|+.--|+..+.-|++++...+... |..++..++...+.-+.+ .+. +.+.+.|- ..++. + .+.
T Consensus 413 i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~-~~~ncsw~~~nlv~h~a~a~~~~~S 490 (858)
T COG5215 413 IENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPF-RSINCSWRKENLVDHIAKAVREVES 490 (858)
T ss_pred HHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cch-HHhhhHHHHHhHHHhhhhhhccccc
Confidence 999999999999999999998887766432 444666677666655443 233 33344443 22332 2 245
Q ss_pred CcccchHhHHHHHhhhh--cCCcHhHHHHHHHHHHHHHHhcCCC-----------------------C------C-----
Q 005891 230 QLVPYYADILGAILPCI--SDKEEKIRVVARETNEELRAIKADP-----------------------A------D----- 273 (671)
Q Consensus 230 ~l~pflp~LLp~LL~~L--sd~~~eIR~~A~~~n~~L~~~i~~~-----------------------~------~----- 273 (671)
-+.||.+.|+.++++.- .+.+.+.|..+-.+.+++.....+. + +
T Consensus 491 ~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~ 570 (858)
T COG5215 491 FLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVE 570 (858)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 57899999999999854 4778889988888888776554321 0 0
Q ss_pred -----------------CC---Ch-HhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCC
Q 005891 274 -----------------GF---DV-GPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (671)
Q Consensus 274 -----------------~~---dl-~~il~~L~~~L~~~-~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD 331 (671)
.- +. +.+++.+.+.+.+. ..-.-..++..+.++.....+.+..|.++++|+|.+.|+-
T Consensus 571 elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~ 650 (858)
T COG5215 571 ELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC 650 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc
Confidence 00 11 12333333333332 1112344566788888888889999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHhh--c---cchHHHHHHHHHhhcccc
Q 005891 332 PSDEVVLLVLEVHACIAK--D---LQHFRQLVVFLVHNFRVD 368 (671)
Q Consensus 332 ~s~eV~~~~l~lLa~Is~--~---~~~F~~fm~~LL~lf~~d 368 (671)
.+--|-..+..+.++++. + ..|=+.||..|.+++++.
T Consensus 651 ~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 651 TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 777788888899999983 2 244567999999999765
No 41
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.69 E-value=6.1e-06 Score=97.88 Aligned_cols=283 Identities=22% Similarity=0.175 Sum_probs=186.8
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc----hhhhhHHHHHHHHHHhhcC-CchHHHHHH-HHHHHHH
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLV 100 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~----~il~~f~eIf~~L~kL~~D-~d~~Vr~gA-~~Ldrll 100 (671)
+.-++.|+|-++.++.|++++||..|.+.+..+...++. +...|..=|||.|..++.| ....||-+= ..|..+.
T Consensus 457 e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 457 EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 445778999999999999999999999998887655543 3444566799999999999 666777543 5666666
Q ss_pred HHhhcccchhhhhhhHHHHHH-----hhcCCCHHHHHHHHHHHHHhhcCCch----hHHhchHHHHHHHHHhcCCCChHH
Q 005891 101 KDIVTESDQFSIEEFIPLLRE-----RMNVLNPYVRQFLVGWITVLDSVPDI----DMLGFLPDFLDGLFNMLSDSSHEI 171 (671)
Q Consensus 101 KdIv~e~~~f~L~~fIP~L~e-----~i~~~np~vR~~alswL~~L~~ip~~----~li~~Lp~fL~gLf~lL~D~~~eV 171 (671)
|... .|+..-++ ...++|.+ ..+.. ++......+=+-...+++|+.+-|
T Consensus 537 ~tA~---------rFle~~q~~~~~g~~n~~nse-------------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~V 594 (1431)
T KOG1240|consen 537 KTAY---------RFLELTQELRQAGMLNDPNSE-------------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIV 594 (1431)
T ss_pred HHHH---------HHHHHHHHHHhcccccCcccc-------------cccccccchHHHHHHHHHHHHHHHHHcCCchHH
Confidence 6332 23332222 11223322 11221 222233333333457899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcH
Q 005891 172 RQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE 251 (671)
Q Consensus 172 R~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~ 251 (671)
|++-.+.+..++.-+|+.... +-+++.|+..++++||..|-.-.+-|.-++-.-|..- --.-++|.+.+.++|.++
T Consensus 595 kr~Lle~i~~LC~FFGk~ksN--D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~EE 670 (1431)
T KOG1240|consen 595 KRALLESIIPLCVFFGKEKSN--DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDGEE 670 (1431)
T ss_pred HHHHHHHHHHHHHHhhhcccc--cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCcch
Confidence 999999999999999875433 3478888999999999988754443321111112221 135689999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---------hHhhhhhHH-
Q 005891 252 KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT---------EVLHFLNDI- 321 (671)
Q Consensus 252 eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~---------~i~~~l~~l- 321 (671)
-|-.-|..+...|.+.--- ....+-+++.-+.-.+-++|--+|-+++..|...++.... -+.||+..-
T Consensus 671 ~Viv~aL~~ls~Lik~~ll--~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v 748 (1431)
T KOG1240|consen 671 AVIVSALGSLSILIKLGLL--RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPV 748 (1431)
T ss_pred hhHHHHHHHHHHHHHhccc--chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccH
Confidence 8888888887777665210 0122455666666667788877899999999999888543 223444421
Q ss_pred -----HHHHHHhcCCCCHHHH
Q 005891 322 -----FDTLLKALSDPSDEVV 337 (671)
Q Consensus 322 -----~p~LL~~LsD~s~eV~ 337 (671)
-+.|+.+|.++.++=+
T Consensus 749 ~~i~s~~~LlsclkpPVsRsv 769 (1431)
T KOG1240|consen 749 IQIESKEVLLSCLKPPVSRSV 769 (1431)
T ss_pred hhhcchHHHHHHhcCCCcHHH
Confidence 2457777777765433
No 42
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.61 E-value=3.8e-05 Score=85.93 Aligned_cols=311 Identities=16% Similarity=0.143 Sum_probs=228.6
Q ss_pred HHHHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc----h-------------------------
Q 005891 16 FLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----D------------------------- 66 (671)
Q Consensus 16 ~~~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~----~------------------------- 66 (671)
+..+|+.+.. .+++..++..+.|+..-.|..+++....|..-.+. +
T Consensus 510 tvilAk~~g~-----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il 584 (975)
T COG5181 510 TVILAKMGGD-----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLIL 584 (975)
T ss_pred HHHHHHHcCC-----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEE
Confidence 3455555554 45677788888998877888877776665522110 0
Q ss_pred -------------hhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchh-hhhhhHHHHHHhhcCCCHHHH
Q 005891 67 -------------FIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF-SIEEFIPLLRERMNVLNPYVR 131 (671)
Q Consensus 67 -------------il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f-~L~~fIP~L~e~i~~~np~vR 131 (671)
.-+|...|+....+++..+.++||.-| .++..+.+ +.+.++++ -+.++=-.|.|-+....|.|=
T Consensus 585 ~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~-vlk~c~e~~~l~klg~iLyE~lge~ypEvL 663 (975)
T COG5181 585 PCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAK-VLKACGETKELAKLGNILYENLGEDYPEVL 663 (975)
T ss_pred ecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH-HHHhcchHHHHHHHhHHHHHhcCcccHHHH
Confidence 114667888888899999999999887 66666666 55544443 367777788899999999999
Q ss_pred HHHHHHHHHhhcCCchh-HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHhcC
Q 005891 132 QFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV----DYGRMAEILVQRAA 206 (671)
Q Consensus 132 ~~alswL~~L~~ip~~~-li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~----d~~~iI~iLl~~~~ 206 (671)
-+++..|.-+.++.+.. +.+-+..+++.|.-+|..-+..|...+...++.++. +.|.. .+-.|.--|++.+.
T Consensus 664 gsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~---~~peyi~~rEWMRIcfeLvd~Lk 740 (975)
T COG5181 664 GSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICM---NSPEYIGVREWMRICFELVDSLK 740 (975)
T ss_pred HHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHh---cCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999998887754 444444445555447877888887777666665554 33321 35556666788888
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHH
Q 005891 207 SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATR 286 (671)
Q Consensus 207 s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~ 286 (671)
+-+.++|+.|-+-..-+.+.-|. ..++..++.++.-.+..-|....-+..-..+.++ .=.++++|..
T Consensus 741 s~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~ 807 (975)
T COG5181 741 SWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMS 807 (975)
T ss_pred HhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHh
Confidence 88999999988877766665442 3567888888887777666544333322223222 1378899999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 287 QLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 287 ~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
....++..+.-..|..+.++.+..++.-..|...+.|.|-..|.|.++-=|+.+..++..++
T Consensus 808 dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 808 DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 99888888999999999999999999999999999999999999999999999999999988
No 43
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.6e-06 Score=90.23 Aligned_cols=357 Identities=18% Similarity=0.181 Sum_probs=214.6
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc-hh----hh---hHHH-----------HHHHHHHhhcCC---ch
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DF----II---FFNQ-----------IFDALCKLSADS---DA 87 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~-~i----l~---~f~e-----------If~~L~kL~~D~---d~ 87 (671)
-.+...||+..++.+|+.+..+||+++.|++-.... .. .. .+.+ -..++..++.=. -.
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhh
Confidence 345778999999999999999999999998633211 00 00 0000 011222222211 12
Q ss_pred HHHHHH-HHHHHHHH--Hhhcc---------------c-chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhh--cCCc
Q 005891 88 NVQSAA-HLLDRLVK--DIVTE---------------S-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD--SVPD 146 (671)
Q Consensus 88 ~Vr~gA-~~LdrllK--dIv~e---------------~-~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~--~ip~ 146 (671)
-.+.|| +-+.|+.| |+-.. + ..-.-.-=+|.|.+.+.+.|+++|++++..|.++. ....
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 234444 44445443 22110 0 01112234789999999999999999999999864 2334
Q ss_pred hhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHh
Q 005891 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVK 225 (671)
Q Consensus 147 ~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d-~~irl~al~WI~~~~~ 225 (671)
.-+..-=|.+++.|..++.|+++.|+-.|..+|..+...-.....+--..=+|.+++.++++- +.| +....-|.++.-
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pli-lasVaCIrnisi 321 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLI-LASVACIRNISI 321 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHH-HHHHHHHhhccc
Confidence 457777888999999999999999999888888776542221000111223566666666653 333 233334443332
Q ss_pred hcCcCcccchHhHHHHHhhhhcCCc-HhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCc--HHHHHHHHHH
Q 005891 226 LGGDQLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALHW 302 (671)
Q Consensus 226 l~~~~l~pflp~LLp~LL~~Lsd~~-~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~--~~tRiaaL~W 302 (671)
......+--=..++.-+...+...+ +||+-.|..+...|..........+--...++.+.+.+.+.. ...++++-..
T Consensus 322 hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 322 HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 2222211111223344455566554 457777766655554322110000111244566777776553 5678888888
Q ss_pred HHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHH
Q 005891 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR 382 (671)
Q Consensus 303 L~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~ 382 (671)
...+.+...+.+. -.+++|.|++.+.|.+.||+-.+...|..+|++..++.+|++.. |++.-.-+| +.+|-
T Consensus 402 ~Lal~d~~k~~ll--d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEaw------d~P~~gi~g-~L~Rf 472 (550)
T KOG4224|consen 402 QLALNDNDKEALL--DSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAW------DHPVQGIQG-RLARF 472 (550)
T ss_pred HHHhccccHHHHh--hcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHh------cCcchhHHH-HHHHH
Confidence 8888888877777 56799999999999999999999999999999999998888765 333322232 23333
Q ss_pred HhccCChHHHHHHHHHh
Q 005891 383 LCVLLDAERVYRELSTI 399 (671)
Q Consensus 383 Lc~~L~~E~Iy~~la~i 399 (671)
+. +-|.-|+.++.|
T Consensus 473 l~---S~~~tf~hia~w 486 (550)
T KOG4224|consen 473 LA---SHELTFRHIARW 486 (550)
T ss_pred Hh---hhHHHHHHHHHH
Confidence 22 225567777766
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=2.8e-06 Score=94.95 Aligned_cols=360 Identities=18% Similarity=0.153 Sum_probs=229.1
Q ss_pred hhHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 32 QIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 32 ~Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~~~~i-l~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
-++|.+..|+. |.++.+|+.|+=++.||+......- ..-=...+|.+.+++.+++..|++-| -+|.+...|-..=.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R- 187 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR- 187 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH-
Confidence 58889999995 8889999999999999985432210 00112557778999999999999988 67766443221100
Q ss_pred hhh-hhhhHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCC-chhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 109 QFS-IEEFIPLLRERMNVLNP-YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 109 ~f~-L~~fIP~L~e~i~~~np-~vR~~alswL~~L~~ip-~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
++. -...+++|...+...++ .....+...+++|..-. +..-...+-.+|+.|++++..++++|..-||-++.-+...
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 111 12345666667766665 44555667777886544 3334456777888999999999999999999998888742
Q ss_pred hhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc-ccchHhHHHHHhhhhc-CCcHhHHHHHHHHHH
Q 005891 186 IKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYYADILGAILPCIS-DKEEKIRVVARETNE 262 (671)
Q Consensus 186 I~~~~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l-~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~ 262 (671)
-....+.. -..++|.++..+.+++.-++.-|+..+.+++.-....- .---...+|.+..++. .....||+.|+-+..
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 21100011 24688999999999998888888888877544322110 0014566777777787 444558887765544
Q ss_pred HHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhh--HHHHHHHHhcCCCCHHHHHHH
Q 005891 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPSDEVVLLV 340 (671)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD~s~eV~~~~ 340 (671)
....--.+.-..+--..+++.|...+.+....+|-.|.-.+..+..+...+-..|+= ++++.+...|.=.+..++..+
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~ 427 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVA 427 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHH
Confidence 322100000000001377888999999888989999888888777776555444433 477778788866677777777
Q ss_pred HHHHHHHhh---ccchHHHHHHHHHhhccccchhhhhH-HHHHHHHHhccCChHHHHHHHHHhhcc
Q 005891 341 LEVHACIAK---DLQHFRQLVVFLVHNFRVDNSLLEKR-GALIIRRLCVLLDAERVYRELSTILEG 402 (671)
Q Consensus 341 l~lLa~Is~---~~~~F~~fm~~LL~lf~~d~~lLe~R-g~~IIR~Lc~~L~~E~Iy~~la~iL~~ 402 (671)
+..+..|-. ....+.. +.+. ...|+- |-.=|..|+..=| |.||..--.|+++
T Consensus 428 Ld~l~nil~~~e~~~~~~~---n~~~------~~IEe~ggldkiE~LQ~hen-~~Iy~~A~~II~~ 483 (514)
T KOG0166|consen 428 LDGLENILKVGEAEKNRGT---NPLA------IMIEEAGGLDKIENLQSHEN-EEIYKKAYKIIDT 483 (514)
T ss_pred HHHHHHHHHHHHHhccccc---cHHH------HHHHHccChhHHHHhhcccc-HHHHHHHHHHHHH
Confidence 777766652 1111111 1111 112222 2235777777777 7788888888765
No 45
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00046 Score=82.73 Aligned_cols=358 Identities=13% Similarity=0.122 Sum_probs=224.0
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---c-----hh-hhhHHHHHHHHHHhhcCCchHHHHHHHH----HHHH
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---G-----DF-IIFFNQIFDALCKLSADSDANVQSAAHL----LDRL 99 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~---~-----~i-l~~f~eIf~~L~kL~~D~d~~Vr~gA~~----Ldrl 99 (671)
+-|.+...+.- .+..|-+.|.+|..++.... . ++ ..+-...++.++.....+-+.-+..... |-..
T Consensus 519 la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i 597 (1176)
T KOG1248|consen 519 LAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEII 597 (1176)
T ss_pred HHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHH
Confidence 33444444433 34788888888887765421 0 11 1233445556665554333222111122 2222
Q ss_pred HHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHH-HHHHHHhhcCCchhHHhchHHHHHHHHHhc-CCCChHHHHHHHH
Q 005891 100 VKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFL-VGWITVLDSVPDIDMLGFLPDFLDGLFNML-SDSSHEIRQQADS 177 (671)
Q Consensus 100 lKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~a-lswL~~L~~ip~~~li~~Lp~fL~gLf~lL-~D~~~eVR~~a~~ 177 (671)
.++..+..++.....+..-+.+...+.+..++.+. ++.+..++.+.+..=-.+...++ .+.... +-.++.|++.+-.
T Consensus 598 ~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yr 676 (1176)
T KOG1248|consen 598 RVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYR 676 (1176)
T ss_pred HHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHH
Confidence 33444444444455555555565555543333222 23333333222211111111111 222233 3347889999989
Q ss_pred HHHHHHHHhhcC--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHH
Q 005891 178 ALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (671)
Q Consensus 178 ~L~~ll~~I~~~--~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~ 255 (671)
.|+.++....-. ..-.+..+.+.+....++.....|...+.-+..+.+..+.+...|+|+.+|-++=++.+.+...|+
T Consensus 677 lL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~ 756 (1176)
T KOG1248|consen 677 LLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARR 756 (1176)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHh
Confidence 888888751100 012367888899999999998899999998888999988888889999999888888888889999
Q ss_pred HHHHHHHHHH--HhcCCCCCCC---ChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-hhhhhHHHHHHHHhc
Q 005891 256 VARETNEELR--AIKADPADGF---DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV-LHFLNDIFDTLLKAL 329 (671)
Q Consensus 256 ~A~~~n~~L~--~~i~~~~~~~---dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i-~~~l~~l~p~LL~~L 329 (671)
.|-++...+. ....+++++. .+.+++..+...+-.+....+-+.+-.+..++....+.+ .+++++++..+--.|
T Consensus 757 ~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L 836 (1176)
T KOG1248|consen 757 NAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYL 836 (1176)
T ss_pred hHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 9999888887 4444433333 457778888888766443333333455555555444433 367888999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhc------cchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHH
Q 005891 330 SDPSDEVVLLVLEVHACIAKD------LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERV 392 (671)
Q Consensus 330 sD~s~eV~~~~l~lLa~Is~~------~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~I 392 (671)
.-.+++|+..|...+...... .+|.+.+|..++.+.++.+.....+...++-.||...+.+.+
T Consensus 837 ~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 837 ASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999999998887732 357778999999988877776677777788888888887543
No 46
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.39 E-value=0.00012 Score=78.88 Aligned_cols=248 Identities=21% Similarity=0.175 Sum_probs=184.1
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchh
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f 110 (671)
..++.++..+.|+++.||..|...+..+. -.+.++.+.+++.|.++.||..| ..|. ..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg-----------~~ 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALG-----------EL 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHH-----------cc
Confidence 56788899999999999999988865553 24778999999999999999988 3222 22
Q ss_pred hhhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCCh------------HHHHHHHH
Q 005891 111 SIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH------------EIRQQADS 177 (671)
Q Consensus 111 ~L~~fIP~L~e~i~-~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~------------eVR~~a~~ 177 (671)
..+.-+|.+.+.+. +.|..||..+...+..+..... +.+++..+.|... .||.++..
T Consensus 102 ~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 102 GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 34555677777777 7999999999999887654332 5566667777662 56766655
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHH
Q 005891 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVA 257 (671)
Q Consensus 178 ~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A 257 (671)
.+..+- -+..++.+...+.+.+..+|..|..-+..+..-. ..+.+.+.+.+++....+|..+
T Consensus 172 ~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 444433 3556788888999999999998887775433222 6778889999999999999888
Q ss_pred HHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHH
Q 005891 258 RETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (671)
Q Consensus 258 ~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~ 337 (671)
..+.+ .......+..+...+.+..+..+..+-.|+. . -....-.+.+...+.|....++
T Consensus 234 ~~~l~-----------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~--------~~~~~~~~~l~~~~~~~~~~~~ 292 (335)
T COG1413 234 LLALG-----------EIGDEEAVDALAKALEDEDVILALLAAAALG--A--------LDLAEAALPLLLLLIDEANAVR 292 (335)
T ss_pred HHHhc-----------ccCcchhHHHHHHHHhccchHHHHHHHHHhc--c--------cCchhhHHHHHHHhhcchhhHH
Confidence 76542 2345688888999999888888888887777 1 1122334457788899999999
Q ss_pred HHHHHHHHHHhh
Q 005891 338 LLVLEVHACIAK 349 (671)
Q Consensus 338 ~~~l~lLa~Is~ 349 (671)
..+...+..+..
T Consensus 293 ~~~~~~l~~~~~ 304 (335)
T COG1413 293 LEAALALGQIGQ 304 (335)
T ss_pred HHHHHHHHhhcc
Confidence 999988888874
No 47
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=7.6e-05 Score=84.37 Aligned_cols=265 Identities=19% Similarity=0.202 Sum_probs=178.1
Q ss_pred HHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhh-hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh--
Q 005891 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-- 148 (671)
Q Consensus 73 eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L-~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~-- 148 (671)
-+++.|..+..|.|.+||..| +.|-.+-+ .|-+ ...-....+.+.|.+..||..++..+.+..+..+..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-------g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSE-------GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcc-------cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 456668899999999999999 66444322 1222 234456678889999999999999999887765221
Q ss_pred ----HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHH-----HHHHhc-----CCCCHHHHH
Q 005891 149 ----MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAE-----ILVQRA-----ASPDEFTRL 214 (671)
Q Consensus 149 ----li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~-----iLl~~~-----~s~d~~irl 214 (671)
=....+.-+..++.++.|-.-.||..|.++|+.|-+.= +++|. .+.... .++-+.-..
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS--------ee~i~QTLdKKlms~lRRkr~ahkrpk~l~ 342 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS--------EEIIQQTLDKKLMSRLRRKRTAHKRPKALY 342 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH--------HHHHHHHHHHHHhhhhhhhhhcccchHHHH
Confidence 24577788899999999999999999999988886522 12222 122111 111111111
Q ss_pred HHHHHHHH--H-Hhhc-------CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCCh-HhHHHH
Q 005891 215 TAITWINE--F-VKLG-------GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-GPILSI 283 (671)
Q Consensus 215 ~al~WI~~--~-~~l~-------~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il~~ 283 (671)
..-+|-+- . ...+ ...++| ..--.++...+.|+..|||.+|......|... ..++ ...+..
T Consensus 343 s~GewSsGk~~~advpsee~d~~~~siI~--sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s------sP~FA~~aldf 414 (823)
T KOG2259|consen 343 SSGEWSSGKEWNADVPSEEDDEEEESIIP--SGACGALVHGLEDEFYEVRRAAVASLCSLATS------SPGFAVRALDF 414 (823)
T ss_pred hcCCcccCccccccCchhhcccccccccc--ccccceeeeechHHHHHHHHHHHHHHHHHHcC------CCCcHHHHHHH
Confidence 11112110 0 0000 001111 11124666788888899999998776665432 1223 477889
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hccchHHHHHHHHH
Q 005891 284 ATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLV 362 (671)
Q Consensus 284 L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is-~~~~~F~~fm~~LL 362 (671)
|..+|.++-+.+|+.|+..|.++..+ ...-++.++.++++|.|.+++||....++|+.-- ++.+-++..+++|+
T Consensus 415 LvDMfNDE~~~VRL~ai~aL~~Is~~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL 489 (823)
T KOG2259|consen 415 LVDMFNDEIEVVRLKAIFALTMISVH-----LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLL 489 (823)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHH-----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999988 2456778899999999999999998888886644 44566777777777
Q ss_pred hhc
Q 005891 363 HNF 365 (671)
Q Consensus 363 ~lf 365 (671)
+-+
T Consensus 490 ~~L 492 (823)
T KOG2259|consen 490 KNL 492 (823)
T ss_pred HHh
Confidence 643
No 48
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.37 E-value=6.6e-05 Score=89.45 Aligned_cols=335 Identities=18% Similarity=0.180 Sum_probs=207.8
Q ss_pred hhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC
Q 005891 111 SIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
.+-.|++.+..+|+. ..++.|..+++.+..+....+.+. -|+.+++-+..++.|+..+||-.|...|.+++..++..
T Consensus 419 ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 419 GAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred ceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC
Confidence 356799999999997 667999999999999988766543 35666666666999999999999999999999988876
Q ss_pred CCCC----hHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHh-------h------c-----CcC-------cccchHhH-
Q 005891 190 PSVD----YGRMAEILVQRAAS-PDEFTRLTAITWINEFVK-------L------G-----GDQ-------LVPYYADI- 238 (671)
Q Consensus 190 ~~~d----~~~iI~iLl~~~~s-~d~~irl~al~WI~~~~~-------l------~-----~~~-------l~pflp~L- 238 (671)
+..| -+.+.|-|-....+ ....+|.+-..-|..++. . . +.. .-.++..+
T Consensus 497 ~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 6555 24455555555555 333344332222222222 1 0 100 11122333
Q ss_pred ---HHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHh
Q 005891 239 ---LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 315 (671)
Q Consensus 239 ---Lp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~ 315 (671)
-..+...++|+.+.||.+-.+....|...++.... =+-++.+|.-.|++..|..|-+-.+=|.-+.-..+..
T Consensus 577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-- 651 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-- 651 (1431)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence 33556677899999999888887778887775322 2578899999999999999988666655444443333
Q ss_pred hhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHhhccccchhhhhHHHH-HHHHHhccCChH
Q 005891 316 HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGAL-IIRRLCVLLDAE 390 (671)
Q Consensus 316 ~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~-IIR~Lc~~L~~E 390 (671)
.--+.++|.|...|+|..+.|+-+++..+.-+++ .+.+..++++..+-++-.-+.- -+|+.+ ||--....+++-
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~W-IR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLW-IRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHH-HHHHHHHHHHHHHhhhhhh
Confidence 1145689999999999999999999999988885 3455666666666655332211 112222 333333333444
Q ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhh
Q 005891 391 RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTY 470 (671)
Q Consensus 391 ~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lslcll~~~y 470 (671)
.+|..+.-++. .|++.-| +-+-++ ..|-.++..+=.++.|..+++ |.- -.+.+==|+....|
T Consensus 731 dvyc~l~P~ir-----pfl~~~v-----~~i~s~------~~LlsclkpPVsRsv~~~l~r-~~~-ens~f~k~l~~~~~ 792 (1431)
T KOG1240|consen 731 DVYCKLMPLIR-----PFLERPV-----IQIESK------EVLLSCLKPPVSRSVFNQLLR-WSD-ENSSFWKKLLERHY 792 (1431)
T ss_pred hheEEeehhhH-----HhhhccH-----hhhcch------HHHHHHhcCCCcHHHHHHHHH-Hhh-cchHHHHHHHHHhh
Confidence 44444443331 1211100 001111 123333555666777777776 333 33455556666666
Q ss_pred H
Q 005891 471 H 471 (671)
Q Consensus 471 ~ 471 (671)
.
T Consensus 793 ~ 793 (1431)
T KOG1240|consen 793 S 793 (1431)
T ss_pred h
Confidence 3
No 49
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.001 Score=79.08 Aligned_cols=401 Identities=16% Similarity=0.159 Sum_probs=224.7
Q ss_pred hhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCc-hHHHHHH-HHHHHHH
Q 005891 23 FFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD-ANVQSAA-HLLDRLV 100 (671)
Q Consensus 23 ~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d-~~Vr~gA-~~Ldrll 100 (671)
+.+...+++.++..++.++.|.|..||..||..+..|++....+. -.+++...+.+++-.+ .++=-|| -+|..+.
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~~~aWHgacLaLAELA 408 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAEDDSAWHGACLALAELA 408 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHH
Confidence 445668999999999999999999999999999877765333222 3456666666553222 2333355 4444443
Q ss_pred HH-hhcccchhhhhhhHHHHHHhhc--------CCCHHHHHHHHHHHHHhhcCC-chhHHhchHHHHHHHH-HhcCCCCh
Q 005891 101 KD-IVTESDQFSIEEFIPLLRERMN--------VLNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLF-NMLSDSSH 169 (671)
Q Consensus 101 Kd-Iv~e~~~f~L~~fIP~L~e~i~--------~~np~vR~~alswL~~L~~ip-~~~li~~Lp~fL~gLf-~lL~D~~~ 169 (671)
.. +. -...++.++|.+...+. .....||-.++=.+--+.-.. +.++-+++..+...|. ..+-|+.-
T Consensus 409 ~rGlL---lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrev 485 (1133)
T KOG1943|consen 409 LRGLL---LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREV 485 (1133)
T ss_pred hcCCc---chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchh
Confidence 31 11 12346788888886664 234689998888777776543 4567788888877765 78899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC-------C--------------------ChH----HHHHHHHHh-cCCCCHHHHHHHH
Q 005891 170 EIRQQADSALWEFLQEIKNSPS-------V--------------------DYG----RMAEILVQR-AASPDEFTRLTAI 217 (671)
Q Consensus 170 eVR~~a~~~L~~ll~~I~~~~~-------~--------------------d~~----~iI~iLl~~-~~s~d~~irl~al 217 (671)
.+|++|..++.+.+.-.++.|+ . .++ .+++-++.. ..+=|..+|..+.
T Consensus 486 ncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa 565 (1133)
T KOG1943|consen 486 NCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAA 565 (1133)
T ss_pred hHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHH
Confidence 9999998877766665555431 0 122 233333333 3444677888888
Q ss_pred HHHHHHHhhcCcCcc-cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCC---CCC---C---hHhHHHHHHH-
Q 005891 218 TWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA---DGF---D---VGPILSIATR- 286 (671)
Q Consensus 218 ~WI~~~~~l~~~~l~-pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~---~~~---d---l~~il~~L~~- 286 (671)
..+.++....|+.+. -++|.+++ +....+.+.|..+..+.+++......-. .++ . +.++++.+..
T Consensus 566 ~aL~~Ls~~~pk~~a~~~L~~lld----~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~ 641 (1133)
T KOG1943|consen 566 YALHKLSLTEPKYLADYVLPPLLD----STLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDR 641 (1133)
T ss_pred HHHHHHHHhhHHhhcccchhhhhh----hhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHH
Confidence 888877776666554 24555544 4445566667666555554432221100 000 0 1122222222
Q ss_pred hcC-CCcHHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----ccchHHH-HHH
Q 005891 287 QLS-SEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DLQHFRQ-LVV 359 (671)
Q Consensus 287 ~L~-~~~~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~----~~~~F~~-fm~ 359 (671)
.+. .....-|.+.+..+..+....+.-...+ .++.--.+.+++.+++ .++..+.+.++++++ ++.++.. .+.
T Consensus 642 ~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~ 720 (1133)
T KOG1943|consen 642 YFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLIT 720 (1133)
T ss_pred HhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHH
Confidence 222 1124456666666666665554322111 2223334455556666 778888888888873 4444444 667
Q ss_pred HHHhhccccchhhhhHHHHHHHHHhccCChH--------HHHHHHHHhhcccCChhHHHHHHHHHHHHhccch------h
Q 005891 360 FLVHNFRVDNSLLEKRGALIIRRLCVLLDAE--------RVYRELSTILEGEADLDFACTMVQALNLILLTSS------E 425 (671)
Q Consensus 360 ~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E--------~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~------E 425 (671)
..+....+...--+.|| +---|..++.| .+++.+-+....+...+=-+.-|..|+.+--|.. -
T Consensus 721 ~~ls~~~~~~~~~~r~g---~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~ 797 (1133)
T KOG1943|consen 721 RYLSRLTKCSEERIRRG---LILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSES 797 (1133)
T ss_pred HHHHHhcCchHHHHHHH---HHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 66666654433223343 33345556643 4444444333222111212233444444444433 3
Q ss_pred HHHHHHHHHhcc
Q 005891 426 LSELRDLLKKSL 437 (671)
Q Consensus 426 l~~lR~~L~~~l 437 (671)
..++|+.|-+++
T Consensus 798 ~~k~~e~LL~~l 809 (1133)
T KOG1943|consen 798 IEKFRETLLNAL 809 (1133)
T ss_pred HHHHHHHHHHHH
Confidence 345566655544
No 50
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00034 Score=80.21 Aligned_cols=341 Identities=16% Similarity=0.208 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC
Q 005891 5 YSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (671)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D 84 (671)
++|=-|||..+++++.-.+.+ .+-++.+.|.|.+||..+.+-||..|.-|++.|-|+ .....+--++++... +.++
T Consensus 108 LQHPNEyiRG~TLRFLckLkE-~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~f--L~~e 183 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKE-PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESF--LLTE 183 (948)
T ss_pred ccCchHhhcchhhhhhhhcCc-HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHH--HHhc
Confidence 345569999999999999999 889999999999999999999999999999999875 223333344555443 4688
Q ss_pred CchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHh
Q 005891 85 SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM 163 (671)
Q Consensus 85 ~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~l 163 (671)
.|++.|..| --|-. .+ .+.+++.+..-+ +-+.+-++.....+++.|+......+..=.. |+..+..+
T Consensus 184 ~DpsCkRNAFi~L~~------~D-~ErAl~Yl~~~i-dqi~~~~~~LqlViVE~Irkv~~~~p~~~~~----~i~~i~~l 251 (948)
T KOG1058|consen 184 QDPSCKRNAFLMLFT------TD-PERALNYLLSNI-DQIPSFNDSLQLVIVELIRKVCLANPAEKAR----YIRCIYNL 251 (948)
T ss_pred cCchhHHHHHHHHHh------cC-HHHHHHHHHhhH-hhccCccHHHHHHHHHHHHHHHhcCHHHhhH----HHHHHHHH
Confidence 999998877 21100 00 011111111000 0011112333333334444333211111111 22223333
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHH
Q 005891 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA-ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (671)
Q Consensus 164 L~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~-~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~L 242 (671)
|+-+++.|+=.|...|..+- +.| --+..-...++..+ ..+|-.+++-.+--|.++-.. ... -+.+++--+
T Consensus 252 L~stssaV~fEaa~tlv~lS----~~p-~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~-~~~---il~~l~mDv 322 (948)
T KOG1058|consen 252 LSSTSSAVIFEAAGTLVTLS----NDP-TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKAL-HEK---ILQGLIMDV 322 (948)
T ss_pred HhcCCchhhhhhcceEEEcc----CCH-HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhh-hHH---HHHHHHHHH
Confidence 43334444432211110000 000 00111111111111 112222333333333332211 111 266777778
Q ss_pred hhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCC-------CcHHHHHHHHHHHHHHHhhChhhHh
Q 005891 243 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS-------EWEATRIEALHWISTLLNRHRTEVL 315 (671)
Q Consensus 243 L~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~-------~~~~tRiaaL~WL~~L~~~~p~~i~ 315 (671)
|+.++.++-++|.-+.. --++++. .-++++++..|...+.+ ++-.-|..=++-++..+-++|+
T Consensus 323 LrvLss~dldvr~Ktld---i~ldLvs----srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--- 392 (948)
T KOG1058|consen 323 LRVLSSPDLDVRSKTLD---IALDLVS----SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--- 392 (948)
T ss_pred HHHcCcccccHHHHHHH---HHHhhhh----hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH---
Confidence 88899999999876543 3344443 24678999998888742 2334477777777777777754
Q ss_pred hhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHH-HHHHHHHhhccccchhhhhHHHHHHH
Q 005891 316 HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR-QLVVFLVHNFRVDNSLLEKRGALIIR 381 (671)
Q Consensus 316 ~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~-~fm~~LL~lf~~d~~lLe~Rg~~IIR 381 (671)
+...++|.|++.++|..+.--.-.+..+...-+.-+.++ ..+.+|++-|+.=|.---+||.+||-
T Consensus 393 -~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~ 458 (948)
T KOG1058|consen 393 -VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWIL 458 (948)
T ss_pred -HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHH
Confidence 466899999999999998877777777766665555555 48888888887666555788988764
No 51
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.31 E-value=9.3e-05 Score=82.14 Aligned_cols=242 Identities=15% Similarity=0.030 Sum_probs=166.3
Q ss_pred hhhHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 31 QQIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 31 ~~Ii~pvL~~l-~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
+..++.++..| .|++..||..|+-++... +. ...++.|+..+.|.+++|+.++ +.|..+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~------~~----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ------ED----ALDLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc------CC----hHHHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 44678889999 588899988765543211 11 1348899999999999999888 554331
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
..+...+.|...+.+.+|++|..++..+..... +-.+.|...|+|+++.||..|..+|+.+-.
T Consensus 114 --~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---- 176 (410)
T TIGR02270 114 --GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPR---- 176 (410)
T ss_pred --CchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----
Confidence 235556777888899999999999987776321 123456668889999999999888877653
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
...++.|...+.+.++.+|..|+.-+..+ +. +.-++.+...........+..+.... ...
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~l---G~-------~~A~~~l~~~~~~~g~~~~~~l~~~l----al~ 236 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLA---GS-------RLAWGVCRRFQVLEGGPHRQRLLVLL----AVA 236 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHc---CC-------HhHHHHHHHHHhccCccHHHHHHHHH----HhC
Confidence 23456677778999999999998877422 22 23344444433443333332222221 111
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
+. ...++.|...+.++. +|.+++..++.+-. +..++.|+..++|+. ++..+-+.+++|.
T Consensus 237 ~~-------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 237 GG-------PDAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred Cc-------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 22 377788888887754 89999988886543 346778999998876 9999999999999
Q ss_pred h
Q 005891 349 K 349 (671)
Q Consensus 349 ~ 349 (671)
.
T Consensus 296 G 296 (410)
T TIGR02270 296 G 296 (410)
T ss_pred C
Confidence 4
No 52
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=5.4e-05 Score=80.46 Aligned_cols=225 Identities=21% Similarity=0.203 Sum_probs=145.9
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHH------Hhh
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK------DIV 104 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~Kv--~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllK------dIv 104 (671)
+|-+...+.-.|..||||+|.++.||+-- .+.-...--+.++++|..++.|+++.||--| -+|..+.. +|+
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 46667778888999999999999999733 2332223335799999999999999999777 44544332 222
Q ss_pred cccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHH
Q 005891 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFL 183 (671)
Q Consensus 105 ~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~-~eVR~~a~~~L~~ll 183 (671)
. .-=+|.+.+.++++.-..-..-+.+|.++.-.|..+..-.=--||.+|.++|.-.+ .|++-+|...|..+.
T Consensus 290 ~-------ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 290 E-------AGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred h-------cCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 2 12367777777665433344456677777666665544444568889998886654 559988888888887
Q ss_pred HHhhcCCCC-ChHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHH
Q 005891 184 QEIKNSPSV-DYGRMAEILVQRAASPDEFTR--LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (671)
Q Consensus 184 ~~I~~~~~~-d~~~iI~iLl~~~~s~d~~ir--l~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~ 260 (671)
..-.....+ --..-||.++..+.+..-.+| ..++..+-.+.+.....+. -..++|++.++..+...|+|.-|..+
T Consensus 363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~ll--d~gi~~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALL--DSGIIPILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHh--hcCCcceeecccCccchhhcccHHHH
Confidence 633221111 112345666665555443333 4444444334444444444 45789999999999999999888877
Q ss_pred HHHHHHh
Q 005891 261 NEELRAI 267 (671)
Q Consensus 261 n~~L~~~ 267 (671)
...|..-
T Consensus 441 L~Nlss~ 447 (550)
T KOG4224|consen 441 LINLSSD 447 (550)
T ss_pred HHhhhhh
Confidence 7665433
No 53
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0017 Score=78.08 Aligned_cols=332 Identities=16% Similarity=0.153 Sum_probs=197.0
Q ss_pred hhHHhHhhhHHHHHhccCCCCHHHH------HHHHHHHHH-HHHHhcchhhhhHHHHHHHHHHhhcCCchHHHH--HHHH
Q 005891 25 YSETILQQIVPPVLNSFSDQDSRVR------YYACEALYN-IAKVVRGDFIIFFNQIFDALCKLSADSDANVQS--AAHL 95 (671)
Q Consensus 25 ~~~~yl~~Ii~pvL~~l~D~d~rVR------~~A~eaL~n-I~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~--gA~~ 95 (671)
....|-...+|..++-.+-+...-| ....+.+-+ ...++..++ -..+.+....+++|.|..|+. .+..
T Consensus 560 ~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv---~~~l~~s~~e~as~~~~s~~~~~~~sl 636 (1176)
T KOG1248|consen 560 VLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDV---VGSLKDSAGELASDLDESVASFKTLSL 636 (1176)
T ss_pred HHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHH---HHHHHHHHHhHhccchhhhhhHHHHHH
Confidence 3344555667777766665544444 333333221 111111122 346677777778888755533 2245
Q ss_pred HHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh--HHhchHHHHHHHHHhcCCCChHHHH
Q 005891 96 LDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHEIRQ 173 (671)
Q Consensus 96 LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~--li~~Lp~fL~gLf~lL~D~~~eVR~ 173 (671)
||-++.-.... +.-.+..+....-+.-+..++.++.-+-..|..+...|..+ ...++.++...|+.-+.+...-+|.
T Consensus 637 Ldl~~~~a~~~-~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~ 715 (1176)
T KOG1248|consen 637 LDLLIALAPVQ-TESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQA 715 (1176)
T ss_pred HHHHHhhhccc-cchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 55555422211 12223333333333334457788888888888777765433 3456666777777777777888999
Q ss_pred HHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--h---cCcCc-ccchHhHHHHHhhhh
Q 005891 174 QADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVK--L---GGDQL-VPYYADILGAILPCI 246 (671)
Q Consensus 174 ~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~--l---~~~~l-~pflp~LLp~LL~~L 246 (671)
....||..+++.... -+.+ +...|+-++-...+-+...|..|..-|..+.. . .|.+= -.-+...++.|-..+
T Consensus 716 ~rl~~L~~L~~~~~~-e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl 794 (1176)
T KOG1248|consen 716 SRLKCLKRLLKLLSA-EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGL 794 (1176)
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhh
Confidence 999999999998752 1122 34444444444476677777776666655552 2 12110 001333333333333
Q ss_pred cCCcHhHHHHHHH--HHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-hhhhhHHHH
Q 005891 247 SDKEEKIRVVARE--TNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV-LHFLNDIFD 323 (671)
Q Consensus 247 sd~~~eIR~~A~~--~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i-~~~l~~l~p 323 (671)
.-+ +.|..|.. +...+..-.++.-+.--+..+++.+...+.+.+-+.|.+|+..+..+..+.|+.+ .+|.+.++|
T Consensus 795 ~gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~ 872 (1176)
T KOG1248|consen 795 VGD--STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLP 872 (1176)
T ss_pred ccc--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH
Confidence 332 23333432 1122222111111112256888889999999999999999999999999999985 689999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHh
Q 005891 324 TLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVH 363 (671)
Q Consensus 324 ~LL~~LsD~s~eV~~~~l~lLa~Is~--~~~~F~~fm~~LL~ 363 (671)
.++..+.|..-.+|.++-.++.++.. +-++.+.|+.....
T Consensus 873 sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~ 914 (1176)
T KOG1248|consen 873 SLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDM 914 (1176)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHH
Confidence 99998888899999999999888884 44556666654433
No 54
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.19 E-value=5.5e-05 Score=88.19 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcc---cc---------hhhhhh
Q 005891 49 RYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE---SD---------QFSIEE 114 (671)
Q Consensus 49 R~~A~eaL~nI~Kv--~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e---~~---------~f~L~~ 114 (671)
|..|.+.+.-+.|. .|+.-. -.++...|..++++++.. ..+|.+++=+++|.-.- .+ +.--..
T Consensus 791 s~~al~~l~Wv~KaLl~R~~~~--s~~ia~klld~Ls~~~~g-~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ 867 (1030)
T KOG1967|consen 791 SEIALTVLAWVTKALLLRNHPE--SSEIAEKLLDLLSGPSTG-SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCD 867 (1030)
T ss_pred hhHHHHHHHHHHHHHHHcCCcc--cchHHHHHHHhcCCcccc-chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHh
Confidence 34444555555443 233221 246777777777775431 22335666666654331 11 222467
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHh-hcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCC
Q 005891 115 FIPLLRERMNVLNPYVRQFLVGWITVL-DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (671)
Q Consensus 115 fIP~L~e~i~~~np~vR~~alswL~~L-~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d 193 (671)
++|.|.+.+.+..-.+|-..+..+..+ ..+|...+.+.+|.+++-|.+.|+=++.+||..+.+++..++.+-+.-..-+
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~ 947 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH 947 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH
Confidence 889999999877778888888888754 5688888999999999999999999999999999999999998776433347
Q ss_pred hHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHh-hcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 194 YGRMAEILVQRAASPD---EFTRLTAITWINEFVK-LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 194 ~~~iI~iLl~~~~s~d---~~irl~al~WI~~~~~-l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
.+.++|+++.--.+.+ -.+|..|+.-+..+.+ .+...+.||-|+++.++.|++.|...-||..|.++.+.-
T Consensus 948 ~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 948 LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 8999999999888776 4689999999998888 677789999999999999999999999999998876543
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00073 Score=77.93 Aligned_cols=311 Identities=18% Similarity=0.180 Sum_probs=167.8
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHH---hhc-----
Q 005891 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD---IVT----- 105 (671)
Q Consensus 35 ~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKd---Iv~----- 105 (671)
-.|-.|..|+++.||..|+.|+ -|.-+-+- .+-.++.+.+-+|++|.++-|-.+| -+.+-.|-+ ++.
T Consensus 146 lAIk~~~~D~s~yVRk~AA~AI---pKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrk 221 (968)
T KOG1060|consen 146 LAIKKAVTDPSPYVRKTAAHAI---PKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRK 221 (968)
T ss_pred HHHHHHhcCCcHHHHHHHHHhh---HHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHH
Confidence 4456677888888888888774 33322111 1234788888888999999888777 333322211 111
Q ss_pred ------cc---------------------------------c------------------hhhhhhhHHHHHHhhcCCCH
Q 005891 106 ------ES---------------------------------D------------------QFSIEEFIPLLRERMNVLNP 128 (671)
Q Consensus 106 ------e~---------------------------------~------------------~f~L~~fIP~L~e~i~~~np 128 (671)
+. + ..++..++.-..-++++.||
T Consensus 222 lC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~ 301 (968)
T KOG1060|consen 222 LCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP 301 (968)
T ss_pred HHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc
Confidence 00 0 23455566666666777778
Q ss_pred HHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC--C----------------
Q 005891 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--P---------------- 190 (671)
Q Consensus 129 ~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~--~---------------- 190 (671)
.|-..+++....++.-. -.-.|...|.++|. .+++|+..+-+++..+...-+.- |
T Consensus 302 sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk 374 (968)
T KOG1060|consen 302 SVVMAVAQLFYHLAPKN------QVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVK 374 (968)
T ss_pred HHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHH
Confidence 77777777777665433 22334556665443 55677777766666665432211 0
Q ss_pred ------------CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHH
Q 005891 191 ------------SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVAR 258 (671)
Q Consensus 191 ------------~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~ 258 (671)
.-++..|+.-+...+.+.|..+.-.++..|+.+....+. .-+.++.+++..|+..+.-|-..|.
T Consensus 375 ~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV 450 (968)
T KOG1060|consen 375 ILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAV 450 (968)
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHH
Confidence 012333444444444555544555555556555544332 2566666666666655544444444
Q ss_pred HHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHH
Q 005891 259 ETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL 338 (671)
Q Consensus 259 ~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~ 338 (671)
.+...|++.-. ..-.+++..|...+..-....--|++.||+.-+-.- +....++++-.+.++.+|+.++|+.
T Consensus 451 ~vIk~Llq~~p-----~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~---vpri~PDVLR~laksFs~E~~evKl 522 (968)
T KOG1060|consen 451 VVIKRLLQKDP-----AEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEI---VPRIAPDVLRKLAKSFSDEGDEVKL 522 (968)
T ss_pred HHHHHHHhhCh-----HHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh---cchhchHHHHHHHHhhccccchhhH
Confidence 44444333211 112345555555555444445555666665322111 2233455556666777777777777
Q ss_pred HHHHHHHHHh-hccchHHHHHHHHHhhcccc
Q 005891 339 LVLEVHACIA-KDLQHFRQLVVFLVHNFRVD 368 (671)
Q Consensus 339 ~~l~lLa~Is-~~~~~F~~fm~~LL~lf~~d 368 (671)
..+.+-+++- .+...++...+-.+.+-+-|
T Consensus 523 QILnL~aKLyl~~~~~~kll~~Yv~~L~~yD 553 (968)
T KOG1060|consen 523 QILNLSAKLYLTNIDQTKLLVQYVFELARYD 553 (968)
T ss_pred HHHHhhhhheEechhhHHHHHHHHHHHhccC
Confidence 7776666544 34445666555555544433
No 56
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.0048 Score=70.79 Aligned_cols=171 Identities=19% Similarity=0.140 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005891 70 FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (671)
Q Consensus 70 ~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~ 148 (671)
..+.+|..+.+....++..||--. ..+.++ -|-+.+.++..-+.+...+..|++|..|.||.-|+-+++-+..-++.+
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l-~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALL-SDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHH-hccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 467788889999999999999887 444444 344444555667899999999999999999999999999998777665
Q ss_pred HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhc
Q 005891 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLG 227 (671)
Q Consensus 149 li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~-WI~~~~~l~ 227 (671)
=.+....+.. -+=+||++|||++|..++.. | .+-.|.+++++.+.+..+|.-+-+ .+..+ ...
T Consensus 161 e~~v~n~l~~---liqnDpS~EVRRaaLsnI~v-----------d-nsTlp~IveRarDV~~anRrlvY~r~lpki-d~r 224 (892)
T KOG2025|consen 161 ECPVVNLLKD---LIQNDPSDEVRRAALSNISV-----------D-NSTLPCIVERARDVSGANRRLVYERCLPKI-DLR 224 (892)
T ss_pred cccHHHHHHH---HHhcCCcHHHHHHHHHhhcc-----------C-cccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhh
Confidence 4443333333 12389999999998553321 1 334678889999988888876544 22222 221
Q ss_pred CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 228 ~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
..+ ..+-+-.+-..+.|.+..+|.++.+..
T Consensus 225 ~ls----i~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 225 SLS----IDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred hhh----HHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 111 335556667788899999998887654
No 57
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.029 Score=67.32 Aligned_cols=331 Identities=14% Similarity=0.109 Sum_probs=191.8
Q ss_pred HHHHHHHHH-HHHHhhhhhHHhHhhhHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCc
Q 005891 9 FEIIVEQFL-LYADLFFYSETILQQIVPPVLNS-FSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD 86 (671)
Q Consensus 9 ~~~~~~~~~-~~~~~~~~~~~yl~~Ii~pvL~~-l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d 86 (671)
+=....+++ .+.....+...|..-++..++.. +..=|..+|.-|+.++.++++...+... +..++.+......++
T Consensus 519 sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a---~~~L~~lld~~ls~~ 595 (1133)
T KOG1943|consen 519 SVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLA---DYVLPPLLDSTLSKD 595 (1133)
T ss_pred hhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhc---ccchhhhhhhhcCCC
Confidence 334455655 66667777788888888777666 8888999999999999998764333332 133444444444556
Q ss_pred hHHHHHH-----HHHHHH--HHHhhc---ccchhhhhhhHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCchhHHhc-h
Q 005891 87 ANVQSAA-----HLLDRL--VKDIVT---ESDQFSIEEFIPLLRERMNVLN--PYVRQFLVGWITVLDSVPDIDMLGF-L 153 (671)
Q Consensus 87 ~~Vr~gA-----~~Ldrl--lKdIv~---e~~~f~L~~fIP~L~e~i~~~n--p~vR~~alswL~~L~~ip~~~li~~-L 153 (671)
.+.|-|. +....+ ++-... +..-..+..++|.+..+..... .-.|+..+..|..+......-.... .
T Consensus 596 ~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~ 675 (1133)
T KOG1943|consen 596 ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVI 675 (1133)
T ss_pred hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 6666655 222221 110011 1111234556888887776644 5678888888887754433211111 1
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCcc
Q 005891 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLV 232 (671)
Q Consensus 154 p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l~~~~l~ 232 (671)
..+..-+-+.+++++ .+|.++..++++++........-.-.++|...+..+.+. ++.+|.-..-. ++..|..++
T Consensus 676 e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~la----l~~lp~~~i 750 (1133)
T KOG1943|consen 676 ENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILA----LGVLPSELI 750 (1133)
T ss_pred HHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHH----HccCcHHhh
Confidence 223333334557777 899999999999998876532223346888888888777 55566532222 222232222
Q ss_pred --cchHhHHHHHhhhh-cCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC----CC----cHHHHHHHHH
Q 005891 233 --PYYADILGAILPCI-SDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS----SE----WEATRIEALH 301 (671)
Q Consensus 233 --pflp~LLp~LL~~L-sd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~----~~----~~~tRiaaL~ 301 (671)
++-.++...++... +|..++-|.....+.....+.++.....-.++++.+.|.+.++ +. +--+|++|+.
T Consensus 751 ~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~ 830 (1133)
T KOG1943|consen 751 HRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMK 830 (1133)
T ss_pred chHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHH
Confidence 23445555555433 3447888888888887777776632223345566655555553 22 3347999999
Q ss_pred HHHHHHhhChh-hH-hhh-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005891 302 WISTLLNRHRT-EV-LHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (671)
Q Consensus 302 WL~~L~~~~p~-~i-~~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa~I 347 (671)
.+..+...++. ++ .++ ...++..+++--.|+.+..|..++.++.+|
T Consensus 831 al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 831 ALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred HHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 99988777653 21 111 122333344444455555555666555444
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0076 Score=70.10 Aligned_cols=239 Identities=15% Similarity=0.216 Sum_probs=154.6
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~ 191 (671)
+-.+...|..=+++.|.+|--.|+..+..+ .+.+| .|++.+.+-+++..+++-||+.|.-|+-+|.+..
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i---~s~Em---ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~----- 173 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNI---CSPEM---ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV----- 173 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhcc---CCHHH---hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-----
Confidence 344444555555666666666665555554 44444 3455555556888899999999999998888755
Q ss_pred CC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhh------------------------
Q 005891 192 VD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI------------------------ 246 (671)
Q Consensus 192 ~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~L------------------------ 246 (671)
++ .+.+++.-.+.+.+++.-|-.+.+..+.++|+..++.+ .|+-+++|.+...+
T Consensus 174 P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l-~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi 252 (866)
T KOG1062|consen 174 PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL-SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI 252 (866)
T ss_pred chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH
Confidence 34 46677777777777777777777777777887766443 34444555443333
Q ss_pred ---------cCCcHhHHHHHHHHHHHHHHhcCC---CCCCCC----------------hHhHHHHHHHhcCCCcHHHHHH
Q 005891 247 ---------SDKEEKIRVVARETNEELRAIKAD---PADGFD----------------VGPILSIATRQLSSEWEATRIE 298 (671)
Q Consensus 247 ---------sd~~~eIR~~A~~~n~~L~~~i~~---~~~~~d----------------l~~il~~L~~~L~~~~~~tRia 298 (671)
...+++..+...........-... .++++= ..--+++|.+.+.+.+-.+|.-
T Consensus 253 ~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYv 332 (866)
T KOG1062|consen 253 RILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYV 332 (866)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeee
Confidence 222222222221111111111100 011110 1234567778888777888999
Q ss_pred HHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccc
Q 005891 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRV 367 (671)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~ 367 (671)
||+.|..+....|..+..|- .+++.||.|+++.++..|+++.-.+. |+..-+.+++.|+..+..
T Consensus 333 aLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lv-n~~Nv~~mv~eLl~fL~~ 396 (866)
T KOG1062|consen 333 ALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALV-NESNVRVMVKELLEFLES 396 (866)
T ss_pred ehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHh
Confidence 99999999999999888775 46778999999999999999999888 567778888888887743
No 59
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0011 Score=76.76 Aligned_cols=334 Identities=20% Similarity=0.194 Sum_probs=174.0
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
....+++..|+..|+.|.++-||.+|.-...+.-.. ..+ ...-..+.+.|..++.|.++.|-..| .+|.-+.+.-..
T Consensus 116 ~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-~~~-~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 116 DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-DPD-LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC-Chh-hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 567889999999999999999999996654333211 011 11123557788888889999887666 444433321110
Q ss_pred c----cc---------------------------------hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005891 106 E----SD---------------------------------QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (671)
Q Consensus 106 e----~~---------------------------------~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~ 148 (671)
. .. ...+..++..+..++...|+.|-..++..+..
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~-------- 265 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQ-------- 265 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHH--------
Confidence 0 00 01122233333333333333333333322222
Q ss_pred HHhchHHHHHHHH-------HhcCCCChHHHHHHHHHHHHHHHHhhcCCC------------------------------
Q 005891 149 MLGFLPDFLDGLF-------NMLSDSSHEIRQQADSALWEFLQEIKNSPS------------------------------ 191 (671)
Q Consensus 149 li~~Lp~fL~gLf-------~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~------------------------------ 191 (671)
+..+++.+-.+++ -.+-|..+++.-.+-..+..+++.-++...
T Consensus 266 ~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~ 345 (734)
T KOG1061|consen 266 LVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND 345 (734)
T ss_pred HHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH
Confidence 2334444333443 123344446665555544444443322100
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC
Q 005891 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (671)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~ 271 (671)
-++++++.-+.+-....|.+.-..++..|+.+.-...++ .++++.++..+.-...-+-+.+..+...+.+...
T Consensus 346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP-- 418 (734)
T KOG1061|consen 346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP-- 418 (734)
T ss_pred hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC--
Confidence 011222222222233333333333344343333222211 3344444444443333222223333333333222
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHH-Hhhc
Q 005891 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC-IAKD 350 (671)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~-Is~~ 350 (671)
-.++.++.++...+.+-.++.--+|+.||+-=+..+ .+-.+.++..+++...|+..+|...-+...-+ +-..
T Consensus 419 ---~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~----i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 419 ---NKYESVVAILCENLDSLQEPEAKAALIWILGEYAER----IENALELLESFLENFKDETAEVQLELLTAAIKLFLKK 491 (734)
T ss_pred ---CchhhhhhhhcccccccCChHHHHHHHHHHhhhhhc----cCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcC
Confidence 135788888888888777777788999987555444 23456788888999999998887644433323 2233
Q ss_pred cchHHHHHHHHHhhcc--ccchhhhhHHHHHHHHHh
Q 005891 351 LQHFRQLVVFLVHNFR--VDNSLLEKRGALIIRRLC 384 (671)
Q Consensus 351 ~~~F~~fm~~LL~lf~--~d~~lLe~Rg~~IIR~Lc 384 (671)
...=...++++|..-- ++..-+..||=+++|-|.
T Consensus 492 p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 492 PTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred CccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 3345567777777663 446678899888888777
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.019 Score=67.63 Aligned_cols=279 Identities=15% Similarity=0.116 Sum_probs=164.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHH
Q 005891 41 FSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLL 119 (671)
Q Consensus 41 l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L 119 (671)
+.+++.+.|.-|...+ |+...-|+- +..+|+-+.|..+-.|.++|.-- -.|-+..| ....-.-.-++.+
T Consensus 28 l~s~n~~~kidAmK~i--Ia~M~~G~d---mssLf~dViK~~~trd~ElKrL~ylYl~~yak-----~~P~~~lLavNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKI--IAQMSLGED---MSSLFPDVIKNVATRDVELKRLLYLYLERYAK-----LKPELALLAVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHH--HHHHhcCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHH
Confidence 6677777777665443 333334443 56778888888887788888755 22333222 2122233457778
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHH-HH
Q 005891 120 RERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR-MA 198 (671)
Q Consensus 120 ~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~-iI 198 (671)
+.=++++||.+|-+++..+..+ ..-..++.+++.+.+++.|+++.||+.|.-|+..+-+. .++.-.+. .+
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~ 168 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLI 168 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHH
Confidence 8888999999999998877664 23455777789999999999999999998877776641 11111223 67
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhH-HHHHHHHHHHHHHhcCCCCCCCCh
Q 005891 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI-RVVARETNEELRAIKADPADGFDV 277 (671)
Q Consensus 199 ~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eI-R~~A~~~n~~L~~~i~~~~~~~dl 277 (671)
.++.....+.++.+...|+..+.++.. +...+|.-.+.-.+-....-+.... +..-....+.|........+ +-
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~---e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~--s~ 243 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDP---ELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPD--SA 243 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhch---hhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCC--cH
Confidence 777777889999998888887765543 3556666655555544332111111 11111112233333322111 33
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~ 346 (671)
..+...+.-.+.+.+...-..++.-+..+....+..- ....+-|.+... .+..+..+...+.....
T Consensus 244 ~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~--~~~~~~~~l~~L-l~~~~~~~~~vl~~~~~ 309 (757)
T COG5096 244 EDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNN--LFLISSPPLVTL-LAKPESLIQYVLRRNIQ 309 (757)
T ss_pred HHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhcccc--HHHhhccHHHHH-HcCCHHHHHHHHHHhhH
Confidence 4555556666666677777777777777776655442 333444444433 33445555544444333
No 61
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.93 E-value=0.00059 Score=67.24 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=110.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc
Q 005891 168 SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (671)
Q Consensus 168 ~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls 247 (671)
++.||..+..++++++...+ .-++..+|.+..++.++++.+|.+|+.-+..++. .+++.+-+.++..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHc
Confidence 57899999999999997553 2367889999999999999999999998887665 4667778888899999999
Q ss_pred CCcHhHHHHHHHHHHHHHHhcCCCCCCC--ChHhHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHhhChhhHhhhhhH
Q 005891 248 DKEEKIRVVARETNEELRAIKADPADGF--DVGPILSIATRQLS-----SEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (671)
Q Consensus 248 d~~~eIR~~A~~~n~~L~~~i~~~~~~~--dl~~il~~L~~~L~-----~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~ 320 (671)
|++++||..|..+..++...... +.+ .+.+++..+..... ..+...|...+..+.....+ ...-..-.++
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~--~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~k 150 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNP--NIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEK 150 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHH
Confidence 99999999999998887765321 111 12233333333322 13445566666666655554 2222233444
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q 005891 321 IFDTLLKALSDPSDEVVLLVLEVH 344 (671)
Q Consensus 321 l~p~LL~~LsD~s~eV~~~~l~lL 344 (671)
+..-++..-.+..+.+..-++.+|
T Consensus 151 l~~~~~~~~~~~~~~~~~d~~~~l 174 (178)
T PF12717_consen 151 LCQRFLNAVVDEDERVLRDILYCL 174 (178)
T ss_pred HHHHHHHHcccccHHHHHHHHHHH
Confidence 444444433333445544444444
No 62
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.90 E-value=5.1e-05 Score=67.89 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=84.7
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHH-HHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFN-QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~-eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
.+++.++..+.|.++++|..|+.++.++++........... ++++.+.+++.|+++.|+..| .+|.+++.+-......
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 47899999999999999999999999998642222222233 889999999999999999988 7788876632211111
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD 142 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~ 142 (671)
..-..++|.+.+.+.+.+..+|..++..+..+.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222448999999999999999999999888764
No 63
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.015 Score=67.59 Aligned_cols=330 Identities=17% Similarity=0.168 Sum_probs=189.3
Q ss_pred HHHHHHHHHHH-hcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhh-hHHHHHHhhcCCCH
Q 005891 52 ACEALYNIAKV-VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEE-FIPLLRERMNVLNP 128 (671)
Q Consensus 52 A~eaL~nI~Kv-~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~-fIP~L~e~i~~~np 128 (671)
-||||..|+.. ++|.- ..+.||++.|.++..+..||+-- -.|-|..+ +. .++.. =|..++.-++|+|+
T Consensus 52 KleAmKRIia~iA~G~d---vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAE----eq--pdLALLSIntfQk~L~DpN~ 122 (968)
T KOG1060|consen 52 KLEAMKRIIALIAKGKD---VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAE----EQ--PDLALLSINTFQKALKDPNQ 122 (968)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh----cC--CCceeeeHHHHHhhhcCCcH
Confidence 36677776543 55544 35779999999999999999877 45555444 11 11211 26778889999999
Q ss_pred HHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC
Q 005891 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP 208 (671)
Q Consensus 129 ~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~ 208 (671)
-+|.+++..+.-+ -+-..-|-.+-.+-++..|+.+-||+.|..++-.+-..=+ -+.+.+++.+-.-+.+.
T Consensus 123 LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~----e~k~qL~e~I~~LLaD~ 192 (968)
T KOG1060|consen 123 LIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP----EQKDQLEEVIKKLLADR 192 (968)
T ss_pred HHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh----hhHHHHHHHHHHHhcCC
Confidence 9999987766542 2333466777788899999999999999887776653111 11334444444444444
Q ss_pred CHHHHHHHHHHHHH---------------HHhhcCcCcccc-----hHhHHHHHhhhhcC--------------------
Q 005891 209 DEFTRLTAITWINE---------------FVKLGGDQLVPY-----YADILGAILPCISD-------------------- 248 (671)
Q Consensus 209 d~~irl~al~WI~~---------------~~~l~~~~l~pf-----lp~LLp~LL~~Lsd-------------------- 248 (671)
.+.+-=.|+....+ +|.+.++ +-.| +..++..--..+.+
T Consensus 193 splVvgsAv~AF~evCPerldLIHknyrklC~ll~d-vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~ 271 (968)
T KOG1060|consen 193 SPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPD-VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDK 271 (968)
T ss_pred CCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccc-hhhhhHHHHHHHHHHHHHhcCCCccccccccccCccccccccc
Confidence 43222111111111 1111100 0000 00000000000000
Q ss_pred ------C---cHhHHHHHHHHHHHHH--------HhcC---CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005891 249 ------K---EEKIRVVARETNEELR--------AIKA---DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (671)
Q Consensus 249 ------~---~~eIR~~A~~~n~~L~--------~~i~---~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~ 308 (671)
+ ++++|..-..++-.|. .... .-+..-+...|++.|...|.+ +..+|...|+.+..+..
T Consensus 272 ~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 272 YNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVLQNIATISI 350 (968)
T ss_pred ccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHh
Confidence 0 2333332222111111 0000 000011346777778776654 45688999999999999
Q ss_pred hChhhHhhhhhHHH------------------------------HHHHHhcCCCCHHHHHHHHHHHHHHhhc-cchHHHH
Q 005891 309 RHRTEVLHFLNDIF------------------------------DTLLKALSDPSDEVVLLVLEVHACIAKD-LQHFRQL 357 (671)
Q Consensus 309 ~~p~~i~~~l~~l~------------------------------p~LL~~LsD~s~eV~~~~l~lLa~Is~~-~~~F~~f 357 (671)
+.|.=+.||+..+| +.+..-.++.+-+++..+.+.+++-+++ ..-=...
T Consensus 351 ~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tC 430 (968)
T KOG1060|consen 351 KRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTC 430 (968)
T ss_pred cchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHH
Confidence 99888888876432 3333333444445777777888877753 3344568
Q ss_pred HHHHHhhccccchhhhhHHHHHHHHHhccCChHH--HHHHHHHhhcc
Q 005891 358 VVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER--VYRELSTILEG 402 (671)
Q Consensus 358 m~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~--Iy~~la~iL~~ 402 (671)
|.+|+.++++.....-+-...+||.|-..=+++- |-..||+.+..
T Consensus 431 L~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldt 477 (968)
T KOG1060|consen 431 LNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDT 477 (968)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhh
Confidence 9999999976644444445778898888877764 78888887743
No 64
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.001 Score=75.48 Aligned_cols=213 Identities=21% Similarity=0.185 Sum_probs=147.7
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHh-hc---cc-
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI-VT---ES- 107 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdI-v~---e~- 107 (671)
..-+...++|+|.+||..|.|++-.+..+.+ + -.-+....+++++|.+..||.+| .++.-.-+-- +. +.
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L--~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---L--SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccc---c--cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 3337778899999999999999888764222 2 23556778899999999999999 4432222211 01 11
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHH----------------------------
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG---------------------------- 159 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~g---------------------------- 159 (671)
...-.+.-.-.+.+.+.|....||..+...+.-+-.+...=+..-|+.=+-+
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 1233455566778888899999999888888877666553222222221111
Q ss_pred -----------------------HHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHhcCCCCHHHHHH
Q 005891 160 -----------------------LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLT 215 (671)
Q Consensus 160 -----------------------Lf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~-~~iI~iLl~~~~s~d~~irl~ 215 (671)
+..-+.|..-|||++|...+..+.. +. +++ ..-+.+|+...++..+.+|+.
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~---ss--P~FA~~aldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT---SS--PGFAVRALDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc---CC--CCcHHHHHHHHHHHhccHHHHHHHH
Confidence 1223556667999999887776664 22 333 456788999999988999999
Q ss_pred HHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 216 AITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 216 al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
|+..+..+... +.--...++.++.++.|..++||+...+..
T Consensus 430 ai~aL~~Is~~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 430 AIFALTMISVH-----LAIREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred HHHHHHHHHHH-----heecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999877765 223578899999999999999998876543
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.029 Score=64.79 Aligned_cols=203 Identities=19% Similarity=0.211 Sum_probs=127.1
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHH----HHH----------
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHL----LDR---------- 98 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~----Ldr---------- 98 (671)
+-+-|+..++..-+-||.-|.-.+|.+.-.-...+- ..||-|-.-+.|+|+.|.+||-. |.|
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA 220 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA 220 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc
Confidence 445667777788888899888888887643333333 44666777789999999999832 111
Q ss_pred --HHHHhhccc------------------chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---ch-hHHhchH
Q 005891 99 --LVKDIVTES------------------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP---DI-DMLGFLP 154 (671)
Q Consensus 99 --llKdIv~e~------------------~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip---~~-~li~~Lp 154 (671)
+-|=.++.+ ...--.+++|+|.+.|... .....+-++++.+.++. |. +-....-
T Consensus 221 P~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT--~AmSLlYECvNTVVa~s~s~g~~d~~asiq 298 (877)
T KOG1059|consen 221 PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMEST--VAMSLLYECVNTVVAVSMSSGMSDHSASIQ 298 (877)
T ss_pred HHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhh--HHHHHHHHHHHHheeehhccCCCCcHHHHH
Confidence 111011100 1233466777777777532 33445556777665541 10 2222333
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc
Q 005891 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY 234 (671)
Q Consensus 155 ~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pf 234 (671)
--++.|-.++.|+++..|=..+-|+..+++.-.. -....-.+++.|+.+.|+-||+.|+..+..|+.-..
T Consensus 299 LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~----~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN------ 368 (877)
T KOG1059|consen 299 LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK----AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKN------ 368 (877)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH----HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhh------
Confidence 3455666677888888888887777777763321 245666788889999999999999988877765332
Q ss_pred hHhHHHHHhhhhcCCcH
Q 005891 235 YADILGAILPCISDKEE 251 (671)
Q Consensus 235 lp~LLp~LL~~Lsd~~~ 251 (671)
+-.|+..++..+..++.
T Consensus 369 l~eIVk~LM~~~~~ae~ 385 (877)
T KOG1059|consen 369 LMEIVKTLMKHVEKAEG 385 (877)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 45666666666665554
No 66
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.81 E-value=0.0056 Score=65.90 Aligned_cols=246 Identities=23% Similarity=0.235 Sum_probs=165.3
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc-CCchHHHHHH-HHHHHHHHHhhccc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~-D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
....+|++...+.|.++.||..|..++.++. .++..+.|.+++. |.+..||..| ..|.++ -.
T Consensus 72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----~~-- 135 (335)
T COG1413 72 SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DPEAVPPLVELLENDENEGVRAAAARALGKL----GD-- 135 (335)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----Cc--
Confidence 3568899999999999999999998766653 2355666777666 8999999988 443332 11
Q ss_pred chhhhhhhHHHHHHhhcCCC------------HHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHH
Q 005891 108 DQFSIEEFIPLLRERMNVLN------------PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQA 175 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~n------------p~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a 175 (671)
... ++.+.+.+.+.+ ..+|..++..+..+. -|...+.+..++.|+..+||..|
T Consensus 136 -~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 136 -ERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG----------DPEAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred -hhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHH
Confidence 122 444444454433 256776666665532 34445566678899999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHH
Q 005891 176 DSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (671)
Q Consensus 176 ~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~ 255 (671)
...|..+.... ..+.+.+.....++++.+|..++.-+... -..+-++.+...+.+.+..++.
T Consensus 201 a~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~----------~~~~~~~~l~~~l~~~~~~~~~ 262 (335)
T COG1413 201 ASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEI----------GDEEAVDALAKALEDEDVILAL 262 (335)
T ss_pred HHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhccc----------CcchhHHHHHHHHhccchHHHH
Confidence 88888777532 46778888999999999999877766421 2456667778888888887777
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHH
Q 005891 256 VARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE 335 (671)
Q Consensus 256 ~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~e 335 (671)
.+..... .++...-...+...+.+..+..|..+...+..+...... ..++....|....
T Consensus 263 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~a~~~~~~~~~~~ 321 (335)
T COG1413 263 LAAAALG-----------ALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAV----------AALLLALEDGDAD 321 (335)
T ss_pred HHHHHhc-----------ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccchH----------HHHHHHhcCCchh
Confidence 6665543 223334445566666677777888887777776665532 2344555666666
Q ss_pred HHHHHHHHHH
Q 005891 336 VVLLVLEVHA 345 (671)
Q Consensus 336 V~~~~l~lLa 345 (671)
++........
T Consensus 322 ~~~~~~~~~~ 331 (335)
T COG1413 322 VRKAALILLE 331 (335)
T ss_pred hHHHHHHHHH
Confidence 6666655544
No 67
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0099 Score=69.06 Aligned_cols=340 Identities=16% Similarity=0.173 Sum_probs=223.9
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhh
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSI 112 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L 112 (671)
.++.++.-+.|++|.+|.-|...+.-+ .+-..+..+++.+.+++.|.++-||..|...-+-+-++-.+ -+.-
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~--~~~~ 158 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCL------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD--LVED 158 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeE------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh--hccc
Confidence 568889999999999999886654332 11122456789999999999999999885433333333222 2345
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~-~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~ 191 (671)
.-|++.|...+.|.||.|-..++..+..+.+... ......-+.++..+...+++-+.=-+- ..|+.+.....+ .+
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~IL~~l~~y~p~-d~ 234 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---FILDCLAEYVPK-DS 234 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---HHHHHHHhcCCC-Cc
Confidence 6789999999999999999999999999876544 466667777777777766655543333 334455554443 22
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC
Q 005891 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (671)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~ 271 (671)
.+...|++.+..++++.+..+-+.+..-+..++...+..-.-++.++-|-+...++... ++.-+|.+....+...
T Consensus 235 ~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~---- 309 (734)
T KOG1061|consen 235 REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK---- 309 (734)
T ss_pred hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh----
Confidence 46788999999999999888777776666555554443111235555555555555444 7777776543332222
Q ss_pred CCCCChHhHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 272 ADGFDVGPILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 272 ~~~~dl~~il~~L~~~L~---~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
...+...-...|. ++....++.-++-+..++... -+.++++.+..--.+-+.+.+.++.+++++++
T Consensus 310 -----~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~------nl~qvl~El~eYatevD~~fvrkaIraig~~a 378 (734)
T KOG1061|consen 310 -----RPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA------NLAQVLAELKEYATEVDVDFVRKAVRAIGRLA 378 (734)
T ss_pred -----ChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh------HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhh
Confidence 1234444444443 334556777777777776653 24457777777788889999999999999988
Q ss_pred hc-cchHHHHHHHHHhhcccc-chhhhhHHHHHHHHHhccCCh--HHHHHHHHHhhcc
Q 005891 349 KD-LQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEG 402 (671)
Q Consensus 349 ~~-~~~F~~fm~~LL~lf~~d-~~lLe~Rg~~IIR~Lc~~L~~--E~Iy~~la~iL~~ 402 (671)
.. ++. ...+..||+++... .-..+++ -.+||.+-...+. |.|..++...++.
T Consensus 379 ik~e~~-~~cv~~lLell~~~~~yvvqE~-~vvi~dilRkyP~~~~~vv~~l~~~~~s 434 (734)
T KOG1061|consen 379 IKAEQS-NDCVSILLELLETKVDYVVQEA-IVVIRDILRKYPNKYESVVAILCENLDS 434 (734)
T ss_pred hhhhhh-hhhHHHHHHHHhhcccceeeeh-hHHHHhhhhcCCCchhhhhhhhcccccc
Confidence 32 223 78888888888744 3444554 5677877777765 4455555555444
No 68
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.00016 Score=76.38 Aligned_cols=223 Identities=22% Similarity=0.182 Sum_probs=154.9
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHH---HhcchhhhhHHHHHHHHHHhhcCCc---hHHHHHHHHHHHHHHHhhcc
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAK---VVRGDFIIFFNQIFDALCKLSADSD---ANVQSAAHLLDRLVKDIVTE 106 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~K---v~~~~il~~f~eIf~~L~kL~~D~d---~~Vr~gA~~LdrllKdIv~e 106 (671)
-+|-++..+.+++..||..|.=||.||+- .+++.++.+ ..++.+..++..+. .-+|++.-.|..++..--..
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~--galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC--GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc--CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 57888999999999999999999999973 344455533 55666666654443 46788888888888743333
Q ss_pred cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFL-DGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL-~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
.+...+.+-+|.|...+|..+|.|-.-++-.|+-+...|...+...++.=. +.|..+|+.++..|..-|. +.
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPal-------R~ 308 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL-------RS 308 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHH-------Hh
Confidence 345678999999999999999999999999999999888776655554432 3366788888877765543 34
Q ss_pred hhcCC-CCCh-------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCcHhHHHH
Q 005891 186 IKNSP-SVDY-------GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVV 256 (671)
Q Consensus 186 I~~~~-~~d~-------~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~~eIR~~ 256 (671)
+++.. ..|. -..++.+...+.++.+.+|.+||--|+++..-..+.+-. .=..++|.+...|+..+..+|+.
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 44321 1111 234556666678888899999988776654321111100 12356778888899889999988
Q ss_pred HHHHHHHH
Q 005891 257 ARETNEEL 264 (671)
Q Consensus 257 A~~~n~~L 264 (671)
|+=+....
T Consensus 389 ACWAisNa 396 (526)
T COG5064 389 ACWAISNA 396 (526)
T ss_pred HHHHHHhh
Confidence 87654443
No 69
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.77 E-value=0.02 Score=67.43 Aligned_cols=282 Identities=16% Similarity=0.156 Sum_probs=183.0
Q ss_pred hhhHHhHhhhHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHH
Q 005891 24 FYSETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK 101 (671)
Q Consensus 24 ~~~~~yl~~Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllK 101 (671)
....+.+..++..-++.++ |.-+-+|-.|+.++.-.+| ..-..+..+.|+++|..++++.+..|-+.- +.|.-.+|
T Consensus 482 ~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~ 559 (1005)
T KOG2274|consen 482 VINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK 559 (1005)
T ss_pred ccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc
Confidence 3334555566655555554 7778899999888655542 223346778999999999999988876655 55444433
Q ss_pred HhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 005891 102 DIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (671)
Q Consensus 102 dIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ 181 (671)
.=.+-++-.-++ ..|.++--..+.-.|| -|-..+..++.+
T Consensus 560 -~dpef~as~~sk-------------------------------------I~P~~i~lF~k~s~DP--~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 560 -LDPEFAASMESK-------------------------------------ICPLTINLFLKYSEDP--QVASLAQDLFEE 599 (1005)
T ss_pred -cChhhhhhhhcc-------------------------------------hhHHHHHHHHHhcCCc--hHHHHHHHHHHH
Confidence 000000000112 2344444333566666 666777777777
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCc-HhHHH
Q 005891 182 FLQEIKNSPSVDYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKE-EKIRV 255 (671)
Q Consensus 182 ll~~I~~~~~~d~~~iI~iLl~~~~s~d----~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~-~eIR~ 255 (671)
+++.- ...+.--...||.+++-++.++ ...--.++..|..+++-.|..+-. +.....|++-+|.-+++ .+.-+
T Consensus 600 l~q~~-~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ 678 (1005)
T KOG2274|consen 600 LLQIA-ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQ 678 (1005)
T ss_pred HHHHH-HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHH
Confidence 77722 2222334567788887777765 345566888898889887776422 56777889999887654 56777
Q ss_pred HHHHHHHHHHHhc----C--CCCCCCChHhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHh
Q 005891 256 VARETNEELRAIK----A--DPADGFDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 328 (671)
Q Consensus 256 ~A~~~n~~L~~~i----~--~~~~~~dl~~il~~L~~~L~~~~-~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~ 328 (671)
.|.+|...+...- . ....+.++..++.++.+.|+-.. ..+-.-+=..+..|..+++.++.+-++.++.++++.
T Consensus 679 ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisr 758 (1005)
T KOG2274|consen 679 NATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISR 758 (1005)
T ss_pred hHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 7888887766441 1 12335668899999997776432 222222235777899999999999999999999988
Q ss_pred cCCCC-HHHHHHHHHHHHHHh
Q 005891 329 LSDPS-DEVVLLVLEVHACIA 348 (671)
Q Consensus 329 LsD~s-~eV~~~~l~lLa~Is 348 (671)
|.... ..|++.-.-+++.+.
T Consensus 759 mq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 759 LQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HHHhhhHHHHHHHHHHHHHHh
Confidence 86644 667776667777766
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0059 Score=70.94 Aligned_cols=270 Identities=19% Similarity=0.230 Sum_probs=144.2
Q ss_pred HHHHHhhhhhHHh-HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-H
Q 005891 17 LLYADLFFYSETI-LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-H 94 (671)
Q Consensus 17 ~~~~~~~~~~~~y-l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~ 94 (671)
.++-.+|+...+- ...+.|-|-+.++.+++-||+-|..+.+.+...+. +....| .+..-+++.|.+..|--|+ .
T Consensus 126 lAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f---~~~~~~lL~ek~hGVL~~~l~ 201 (866)
T KOG1062|consen 126 LALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHF---VIAFRKLLCEKHHGVLIAGLH 201 (866)
T ss_pred HHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHh---hHHHHHHHhhcCCceeeeHHH
Confidence 3555566655444 35577888888888899999988888777664322 222222 3444566777777777666 5
Q ss_pred HHHHHHHHhhcccc--hhhhhhhHHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH
Q 005891 95 LLDRLVKDIVTESD--QFSIEEFIPLLRERMN-----------VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (671)
Q Consensus 95 ~LdrllKdIv~e~~--~f~L~~fIP~L~e~i~-----------~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf 161 (671)
.+..+||.-..... ..-++.|+-.|.+... ..+|+....++-.+..+-.. +.+-.+.|.++|..++
T Consensus 202 l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqva 280 (866)
T KOG1062|consen 202 LITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVA 280 (866)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHH
Confidence 55556652111000 1124455555555442 35687777777777766443 3455666677766665
Q ss_pred H--------------------hcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005891 162 N--------------------MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWIN 221 (671)
Q Consensus 162 ~--------------------lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~ 221 (671)
. |--+++...|..|.++|++|+. ++|--+|..|+..+.
T Consensus 281 tntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~----------------------n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 281 TNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLL----------------------NRDNNIRYVALNMLL 338 (866)
T ss_pred hcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc----------------------CCccceeeeehhhHH
Confidence 2 1122444455555555555553 333334444444443
Q ss_pred HHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHH
Q 005891 222 EFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALH 301 (671)
Q Consensus 222 ~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~ 301 (671)
..++..+.....| =..++.|+.|+|..||.-|.+... .++. +-++..+++.+...|.+..+..|..+..
T Consensus 339 r~V~~d~~avqrH----r~tIleCL~DpD~SIkrralELs~---~lvn----~~Nv~~mv~eLl~fL~~~d~~~k~~~as 407 (866)
T KOG1062|consen 339 RVVQQDPTAVQRH----RSTILECLKDPDVSIKRRALELSY---ALVN----ESNVRVMVKELLEFLESSDEDFKADIAS 407 (866)
T ss_pred hhhcCCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHH---HHhc----cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3333333322211 124555666666666655544322 2222 2345566666666666555556666666
Q ss_pred HHHHHHhhChhhHhhhhhHHHHH
Q 005891 302 WISTLLNRHRTEVLHFLNDIFDT 324 (671)
Q Consensus 302 WL~~L~~~~p~~i~~~l~~l~p~ 324 (671)
-+..+++++..+=.=|++.++..
T Consensus 408 ~I~~laEkfaP~k~W~idtml~V 430 (866)
T KOG1062|consen 408 KIAELAEKFAPDKRWHIDTMLKV 430 (866)
T ss_pred HHHHHHHhcCCcchhHHHHHHHH
Confidence 66666666544333344444433
No 71
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.04 Score=63.60 Aligned_cols=167 Identities=20% Similarity=0.178 Sum_probs=109.8
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
..++++..-++++...+|..||+-.|.-+..+......---.-||.+...+..-+-|.+|+||--| -+|.++-.|=-.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d- 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD- 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence 356677788899999999999999999877765422111113478888888888899999999988 667776432111
Q ss_pred cchhhhhhhHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 107 SDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i-~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
+.+++ ...+...+ +|+++.||..+++.|.+=.+ -+|-+++ -..|.+..+|+.+-+ ..+..
T Consensus 160 -ee~~v---~n~l~~liqnDpS~EVRRaaLsnI~vdns--------Tlp~Ive----RarDV~~anRrlvY~---r~lpk 220 (892)
T KOG2025|consen 160 -EECPV---VNLLKDLIQNDPSDEVRRAALSNISVDNS--------TLPCIVE----RARDVSGANRRLVYE---RCLPK 220 (892)
T ss_pred -CcccH---HHHHHHHHhcCCcHHHHHHHHHhhccCcc--------cchhHHH----HhhhhhHHHHHHHHH---Hhhhh
Confidence 12222 22233333 58999999999998876333 2555555 677888888887755 44444
Q ss_pred hhcCCCCChHHHHHHHHHhcCCCCHHHHHH
Q 005891 186 IKNSPSVDYGRMAEILVQRAASPDEFTRLT 215 (671)
Q Consensus 186 I~~~~~~d~~~iI~iLl~~~~s~d~~irl~ 215 (671)
|. ....+++..+-.|-.-+.+.+..+|-.
T Consensus 221 id-~r~lsi~krv~LlewgLnDRe~sVk~A 249 (892)
T KOG2025|consen 221 ID-LRSLSIDKRVLLLEWGLNDREFSVKGA 249 (892)
T ss_pred hh-hhhhhHHHHHHHHHHhhhhhhhHHHHH
Confidence 41 112345666666666667666555543
No 72
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.72 E-value=0.0018 Score=77.04 Aligned_cols=193 Identities=13% Similarity=0.133 Sum_probs=156.1
Q ss_pred HHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 005891 72 NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (671)
Q Consensus 72 ~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li 150 (671)
+.+-+.+-..+.|++.--|+.| +.+-..++.-..+......+.+...+.-+..|.|-.|-..+...|..++.-.+....
T Consensus 252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 252 SKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 4445556666777877556555 554444443222222345677777778888899999999999999999998888899
Q ss_pred hchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 005891 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (671)
Q Consensus 151 ~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~ 230 (671)
.|--..++.+|..+.|....+|.++..+++.++. ......+++.++..+.++++.+|..+..|+.......+..
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 9998999999999999999999999999998886 2568999999999999999999999999999988876532
Q ss_pred --cccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC
Q 005891 231 --LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 231 --l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
...=...++|.+.+...|.+.+||.+|.++...+++..++
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 2223778899999999999999999999999999999875
No 73
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.72 E-value=6.4e-05 Score=59.23 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005891 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (671)
Q Consensus 293 ~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~I 347 (671)
|.+|.+|+..|+.+.+.+++.+.+|.++++|.|++.|.|+++.||..+++.|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999865
No 74
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.71 E-value=0.031 Score=62.44 Aligned_cols=213 Identities=16% Similarity=0.164 Sum_probs=154.1
Q ss_pred hhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhc-CCchhHHhchHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhh
Q 005891 111 SIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~-ip~~~li~~Lp~fL~gLf~lL-~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
....++..+.+.... .++.+|..++..+..+.+ .++.+ .+.++++.+.... ++...+-|..+.+.+.-+.+..-
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH
Confidence 455577777766554 569999999999997755 45544 5666666666555 56677778877777777777665
Q ss_pred cCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc--------CcCc-----ccchHhHHHHHhhhhcCCcHhHH
Q 005891 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG--------GDQL-----VPYYADILGAILPCISDKEEKIR 254 (671)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~--------~~~l-----~pflp~LLp~LL~~Lsd~~~eIR 254 (671)
-..+.....+++.+++.+.+ +.+...|..-+..++.-. +..+ -.|+..++|.++......+.++|
T Consensus 263 ~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 263 MRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred HcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 55566678889999988887 444444444444333321 1111 13577888888888887777778
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHh
Q 005891 255 VVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 328 (671)
Q Consensus 255 ~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~ 328 (671)
.....+...+++.+...--.-+++.++|.+.+-+..++...|.++|+-+..+.+..|+-+.+|++.++|.|++.
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 77777777777655421111246899999999999888999999999999999999999999999999999874
No 75
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.039 Score=63.72 Aligned_cols=228 Identities=17% Similarity=0.198 Sum_probs=146.7
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCC
Q 005891 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (671)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d 193 (671)
.+-+-+...+....|++|.-++..++-+---.+..+-+.+|.+-+ -|.||++.|..+|.+.+=++.+ +.|. +
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----kLeDpDp~V~SAAV~VICELAr---KnPk-n 215 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----KLEDPDPSVVSAAVSVICELAR---KNPQ-N 215 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----hccCCCchHHHHHHHHHHHHHh---hCCc-c
Confidence 355677788889999999999999987665566677888887777 8999999999998775444443 4442 3
Q ss_pred hHHHHHHHHHhcC--CCCHH-HHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC
Q 005891 194 YGRMAEILVQRAA--SPDEF-TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 194 ~~~iI~iLl~~~~--s~d~~-irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
+=.+.|.+-+-+. +.+|- ||+ +++.+ .+.|+-|++-.-+++-+.+--. +..|.....+-.+.+-.
T Consensus 216 yL~LAP~ffkllttSsNNWmLIKi---------iKLF~-aLtplEPRLgKKLieplt~li~--sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 216 YLQLAPLFYKLLVTSSNNWVLIKL---------LKLFA-ALTPLEPRLGKKLIEPITELME--STVAMSLLYECVNTVVA 283 (877)
T ss_pred cccccHHHHHHHhccCCCeehHHH---------HHHHh-hccccCchhhhhhhhHHHHHHH--hhHHHHHHHHHHHHhee
Confidence 3334444443332 22443 322 23333 3455666655444443322111 11122211111111111
Q ss_pred C--CCC-CChHhH----HHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHH
Q 005891 271 P--ADG-FDVGPI----LSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEV 343 (671)
Q Consensus 271 ~--~~~-~dl~~i----l~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~l 343 (671)
. ..+ -|-.+. +..|...+.++....|.-+|..+..++...|..+..|-+ .+++||+|.++.||..++.+
T Consensus 284 ~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALDL 359 (877)
T ss_pred ehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHH
Confidence 0 111 122333 344555556777778999999999999999999988765 46789999999999999999
Q ss_pred HHHHhhccchHHHHHHHHHhhcc
Q 005891 344 HACIAKDLQHFRQLVVFLVHNFR 366 (671)
Q Consensus 344 La~Is~~~~~F~~fm~~LL~lf~ 366 (671)
+--|.+ ++....++..|..++.
T Consensus 360 l~gmVs-kkNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 360 LYGMVS-KKNLMEIVKTLMKHVE 381 (877)
T ss_pred HHHHhh-hhhHHHHHHHHHHHHH
Confidence 998884 6788888888888874
No 76
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.67 E-value=0.0017 Score=77.17 Aligned_cols=198 Identities=16% Similarity=0.155 Sum_probs=151.9
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcch-hhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhh
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~-il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv 104 (671)
...+..+.+-+...+.|++|.=|..|.|.+-.+.+..+++ ...+.+.+...+-....|.+-+|..-| ..+..+.+..-
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 3467778889999999999999999999998888776633 335555666655566688887765544 54444444222
Q ss_pred cccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 105 ~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
.. .........|.+.+++.+..+.+|-.++.++..+.... .+..+.+.++. ++.+.++.+|..+...++..++
T Consensus 328 ~~-~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~--~l~~~~~~I~e----~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 328 PL-FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST--PLSKMSEAILE----ALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred hh-hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc--cHHHHHHHHHH----HhcCCChhhHHHHHHHHHHHHh
Confidence 21 12336677899999999999999999999999877632 34445555555 8999999999999999999999
Q ss_pred Hhhc-CC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc
Q 005891 185 EIKN-SP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (671)
Q Consensus 185 ~I~~-~~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l 231 (671)
..+. .+ ......++|.++.+..+.+..+|..|.+.+..+....|+..
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 8872 21 23489999999999999999999999999999999887664
No 77
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.66 E-value=0.00024 Score=63.46 Aligned_cols=110 Identities=24% Similarity=0.198 Sum_probs=83.2
Q ss_pred HHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc
Q 005891 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (671)
Q Consensus 74 If~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~ 152 (671)
+++.|.+++.|.+..+|.+| ..+..++++.......+--..++|.+.+.+.+.++.+|..++..+..+....+.....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 57778888888989999888 77777766321111122223889999999999999999999999999988765333322
Q ss_pred h-HHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005891 153 L-PDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 153 L-p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll 183 (671)
. ..+++.|.+.+.|.+.++|..++.+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 236777777999999999999999888765
No 78
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.014 Score=64.87 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=125.1
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHh
Q 005891 72 NQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (671)
Q Consensus 72 ~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~ 151 (671)
.+.-+.+.++++|++-+- -|+.-+.|.+. ... .-.+..++-.+..-+....|.-|..-++-+..+..-+..+=..
T Consensus 180 sde~~~~w~qls~~~~h~-~g~trlqr~m~---~~~-~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~ 254 (533)
T KOG2032|consen 180 SDEVSRRWSQLSDNDIHR-VGLTRLQRFMA---CVQ-DLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTG 254 (533)
T ss_pred hhcccchhhhcccCcccH-HHHHHHHHHHH---hhC-CccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccc
Confidence 344455566666666542 23333333322 211 1112233333333223333444444444444433333223335
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhh-cCc
Q 005891 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKL-GGD 229 (671)
Q Consensus 152 ~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l-~~~ 229 (671)
.+..++..+-+-.+||+..+|..|+.+|+......+.+...+...++..++..+.+. ++++.++++.-+....+. .+.
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 678888888899999999999999999999988654332335677777777766655 688999999988777764 567
Q ss_pred CcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC
Q 005891 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 230 ~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
++-+|+-.+--.+-+...+.+++.|..|....+.|....+.
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence 78888888888888888899999999999888888766553
No 79
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.11 Score=61.34 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=32.6
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHhhcc
Q 005891 321 IFDTLLKALSD--PSDEVVLLVLEVHACIAKDL-QHFRQLVVFLVHNFR 366 (671)
Q Consensus 321 l~p~LL~~LsD--~s~eV~~~~l~lLa~Is~~~-~~F~~fm~~LL~lf~ 366 (671)
+++.+....+. .++++++.+++.++.....- ..-..|+..++..++
T Consensus 356 ~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~ 404 (757)
T COG5096 356 ILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLE 404 (757)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhcc
Confidence 55566666666 77888888998888887533 333467888888777
No 80
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.52 E-value=0.00075 Score=79.04 Aligned_cols=171 Identities=20% Similarity=0.271 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHH------HHHH--hhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHH
Q 005891 6 SFLFEIIVEQFL------LYAD--LFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFD 76 (671)
Q Consensus 6 ~~~~~~~~~~~~------~~~~--~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~-~il~~f~eIf~ 76 (671)
+.+|++|+.-+- -+|. ++.. .++...|+|.+...|.-....+|.-=.+++.++.+.+.. -+++.++.++|
T Consensus 834 a~~fsiim~D~~~~~~r~~~a~~riLyk-QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlP 912 (1030)
T KOG1967|consen 834 AKLFSIIMSDSNPLLKRKGHAEPRILYK-QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLP 912 (1030)
T ss_pred HHhhHhhhccChHHhhhccccchhHHHH-HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHH
Confidence 456676665442 1121 2444 567889999999999866666777778888898877654 45699999999
Q ss_pred HHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCC---HHHHHHHHHHHHHhhc-CCchhHHh
Q 005891 77 ALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLN---PYVRQFLVGWITVLDS-VPDIDMLG 151 (671)
Q Consensus 77 ~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~n---p~vR~~alswL~~L~~-ip~~~li~ 151 (671)
-|.+.++=+|..||-.+ ..+.-+++..-+ ...-.++.++|.+...-.+.+ --||..+++++.-+.. .|...+.+
T Consensus 913 LLLq~Ls~~D~~v~vstl~~i~~~l~~~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~ 991 (1030)
T KOG1967|consen 913 LLLQALSMPDVIVRVSTLRTIPMLLTESET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS 991 (1030)
T ss_pred HHHHhcCCCccchhhhHhhhhhHHHHhccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc
Confidence 99999999999998777 444444332221 124568999999998887755 5799999999999998 88889999
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHH
Q 005891 152 FLPDFLDGLFNMLSDSSHEIRQQADSA 178 (671)
Q Consensus 152 ~Lp~fL~gLf~lL~D~~~eVR~~a~~~ 178 (671)
|-|+.+.+|.+.|.|+.+-||+.|..+
T Consensus 992 fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 992 FRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 999999999999999999999998654
No 81
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.50 E-value=0.0055 Score=68.21 Aligned_cols=187 Identities=17% Similarity=-0.021 Sum_probs=121.5
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhh
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~ 111 (671)
.+..++.++.|.+..||..+.++|..|- .++..+.|..++.|.++.||.++ +++..- .. -+
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r----~~----~~ 148 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH----RH----DP 148 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh----cc----Ch
Confidence 4889999999999999999999986552 34677888999999999999877 333321 11 11
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH------
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE------ 185 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~------ 185 (671)
.+.+...+.+.++.||..++..+..+-.. ..+| .|...+.|.+++||.+|..++..+-..
T Consensus 149 ----~~~L~~~L~d~d~~Vra~A~raLG~l~~~------~a~~----~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l 214 (410)
T TIGR02270 149 ----GPALEAALTHEDALVRAAALRALGELPRR------LSES----TLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVC 214 (410)
T ss_pred ----HHHHHHHhcCCCHHHHHHHHHHHHhhccc------cchH----HHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHH
Confidence 34566667799999999999999876432 1233 344579999999999998877555210
Q ss_pred --hhcCCCCC-------------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCc
Q 005891 186 --IKNSPSVD-------------YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE 250 (671)
Q Consensus 186 --I~~~~~~d-------------~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~ 250 (671)
+...+... -+..++.|....++++ +|..++..+..+ + -|+.++.++..|.|..
T Consensus 215 ~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~l----g------~p~av~~L~~~l~d~~ 282 (410)
T TIGR02270 215 RRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLV----G------DVEAAPWCLEAMREPP 282 (410)
T ss_pred HHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHc----C------CcchHHHHHHHhcCcH
Confidence 00001110 1133333333333322 444443333211 1 4677888888888765
Q ss_pred HhHHHHHHHHHHHHH
Q 005891 251 EKIRVVARETNEELR 265 (671)
Q Consensus 251 ~eIR~~A~~~n~~L~ 265 (671)
+|..|.++...+.
T Consensus 283 --~aR~A~eA~~~It 295 (410)
T TIGR02270 283 --WARLAGEAFSLIT 295 (410)
T ss_pred --HHHHHHHHHHHhh
Confidence 8888888776654
No 82
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.46 E-value=0.00054 Score=58.56 Aligned_cols=85 Identities=29% Similarity=0.330 Sum_probs=66.7
Q ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhh
Q 005891 34 VPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (671)
Q Consensus 34 i~pvL~~l-~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~ 111 (671)
+|.++..+ +|+++.||..|++++.++. -++.++.|..++.|+++.||..| ..|.++ .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-----------~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-----------G 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------C
Confidence 57788888 9999999999999877442 13778889999999999999988 454432 2
Q ss_pred hhhhHHHHHHhhcC-CCHHHHHHHHHHHH
Q 005891 112 IEEFIPLLRERMNV-LNPYVRQFLVGWIT 139 (671)
Q Consensus 112 L~~fIP~L~e~i~~-~np~vR~~alswL~ 139 (671)
-+..+|.|.+.+.+ .++.+|..++..|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 46689999998877 56677998887763
No 83
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.46 E-value=0.00028 Score=55.50 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 005891 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (671)
Q Consensus 128 p~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~l 182 (671)
|.||..++..|..+....+..+.+|+|++++.|..+|.|++.+||.+|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999888888899999999999999999999999999999988753
No 84
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.44 E-value=0.00015 Score=50.61 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=27.1
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKV 62 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv 62 (671)
|+|.++.+++|++++||++|++++.+|+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999875
No 85
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.37 E-value=0.086 Score=60.54 Aligned_cols=292 Identities=15% Similarity=0.103 Sum_probs=152.2
Q ss_pred HHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHh
Q 005891 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (671)
Q Consensus 73 eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~ 151 (671)
+-+..+..++.- +..+|.-| ..+.+..|+... . -+.-|.-+..+..|.+..||..++--|-.++.-. -.
T Consensus 23 ~~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~-l----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~ 92 (556)
T PF05918_consen 23 EDYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPD-L----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PE 92 (556)
T ss_dssp HHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GG-G----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChh-h----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HH
Confidence 344555555553 45556555 778888885543 1 2344566667778999999999988887776542 35
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhhcC
Q 005891 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA---SPDEFTRLTAITWINEFVKLGG 228 (671)
Q Consensus 152 ~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~---s~d~~irl~al~WI~~~~~l~~ 228 (671)
+++.+.+.|.++|.-.++..+.++.++|..+++ .|-...+..+..++. +.|+.+|..++..|.+-+.-.+
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~-------~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLK-------QDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 889999999999988888888999998988887 454445555555554 5678899999999876555445
Q ss_pred cCcccc----hHhHHHHHhhhhcCCc-HhHHHHHHHHHHHHHHhcCC---CCCCCChHhHHHHHHHhcC-CC-----cHH
Q 005891 229 DQLVPY----YADILGAILPCISDKE-EKIRVVARETNEELRAIKAD---PADGFDVGPILSIATRQLS-SE-----WEA 294 (671)
Q Consensus 229 ~~l~pf----lp~LLp~LL~~Lsd~~-~eIR~~A~~~n~~L~~~i~~---~~~~~dl~~il~~L~~~L~-~~-----~~~ 294 (671)
.+++.+ -.-++..+.+.|.|-. .|.. +.. .+++...- ....-...++++.+.++.. +. +..
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~-l~m----~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e 240 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFE-LFM----SLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPE 240 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHH-HHH----HHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHH-HHH----HHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHH
Confidence 555432 2234455666666522 2211 111 12221111 0001113677888777663 11 111
Q ss_pred H--HH--HHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--c----cchHHHHHHHHHhh
Q 005891 295 T--RI--EALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--D----LQHFRQLVVFLVHN 364 (671)
Q Consensus 295 t--Ri--aaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~--~----~~~F~~fm~~LL~l 364 (671)
. |. +...++-.+..+... ..+++-+..-+++.++|=.++.+..-++++++++. + .+.+..+...|+..
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~S--skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~y 318 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSS--SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKY 318 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHhcCCCCh--HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence 1 11 111222222222221 23344444445556666666777788899999993 2 34455555666655
Q ss_pred ccccc-------hhhhhHHHHHHHHHhccCCh
Q 005891 365 FRVDN-------SLLEKRGALIIRRLCVLLDA 389 (671)
Q Consensus 365 f~~d~-------~lLe~Rg~~IIR~Lc~~L~~ 389 (671)
++... ..+||= -+...+|+..-+.
T Consensus 319 mP~~~~~~~l~fs~vEcL-L~afh~La~k~p~ 349 (556)
T PF05918_consen 319 MPSKKTEPKLQFSYVECL-LYAFHQLARKSPN 349 (556)
T ss_dssp S----------HHHHHHH-HHHHHHHHTT-TH
T ss_pred CCCCCCCCcccchHhhHH-HHHHHHHhhhCcc
Confidence 54321 223432 4577777776654
No 86
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.37 E-value=0.79 Score=57.30 Aligned_cols=280 Identities=14% Similarity=0.120 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCC
Q 005891 211 FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS 290 (671)
Q Consensus 211 ~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~ 290 (671)
..-.....||..++.... .|..-+...+..|+..+..+...+|.-|.+|...+.+. ++.-+--..+-..+...+.+
T Consensus 791 ~~d~~~a~li~~~la~~r-~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~---Dp~vL~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 791 FADDDDAKLIVFYLAHAR-SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEA---DPSVLSRPDVQEAVHGRLND 866 (1692)
T ss_pred cccchhHHHHHHHHHhhh-HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc---ChHhhcCHHHHHHHHHhhcc
Confidence 344556778765554432 33334677777888888888899999999987665543 22223346777788899999
Q ss_pred CcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHH---HHHhhccc
Q 005891 291 EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVV---FLVHNFRV 367 (671)
Q Consensus 291 ~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~fm~---~LL~lf~~ 367 (671)
++..+|+||++.++.+.-..|+-+..|.+.+ .....|..-.||..+++.+..||+..+.|..+.. .++.+..+
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qyY~~i----~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~D 942 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQYYDQI----IERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVND 942 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHHHHHH----HhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcc
Confidence 9999999999999999988888877666654 5567899999999999999999988888877555 44555555
Q ss_pred cchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChhHHHHHHHHHHH--HhccchhHHHHHHHHHhccCCcchHHH
Q 005891 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNL--ILLTSSELSELRDLLKKSLVNPAGKDL 445 (671)
Q Consensus 368 d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~--iLLTs~El~~lR~~L~~~l~~~~~~~l 445 (671)
+....++=...++-++--.=.++..+. ..+.+=+..+++..+. .+.+..+=+=++..|+..+..
T Consensus 943 EEg~I~kLv~etf~klWF~p~~~~~d~--------~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~------ 1008 (1692)
T KOG1020|consen 943 EEGNIKKLVRETFLKLWFTPVPEVNDQ--------PAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLK------ 1008 (1692)
T ss_pred chhHHHHHHHHHHHHHhccCCCccccc--------HHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh------
Confidence 543222211111111111111110000 1112222233333322 344444444456666652110
Q ss_pred HHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHh-----hccc--cchHHHHHHHHHHHHhhchhhHHHHHhhcCCCC-
Q 005891 446 FVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSL-----VEED--LNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGR- 517 (671)
Q Consensus 446 F~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~-----~~~e--~~~~~l~q~d~LvqllEspif~~lRl~Ll~~~~- 517 (671)
=..=||+||+-=+ -+|-.+|+.++ +++| ...+-=-+.+.+--+.==-+|+..|=+||-|..
T Consensus 1009 ----~~~~~~~~v~~~~-------v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv 1077 (1692)
T KOG1020|consen 1009 ----TMKESVKPVALAK-------VTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHV 1077 (1692)
T ss_pred ----hhhhhhhHHHHhh-------cchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHH
Confidence 1234688886433 34555555544 2222 111111122222223333689999999999755
Q ss_pred ---ChhHHH
Q 005891 518 ---YTWLLK 523 (671)
Q Consensus 518 ---~p~L~k 523 (671)
+|||--
T Consensus 1078 ~tL~PYL~s 1086 (1692)
T KOG1020|consen 1078 ITLQPYLTS 1086 (1692)
T ss_pred HHhhhHHhc
Confidence 788753
No 87
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.35 E-value=0.0084 Score=66.17 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=109.1
Q ss_pred HHhHhhhHHHHHhccCC-CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhh
Q 005891 27 ETILQQIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D-~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv 104 (671)
++|...|+--++.-++| .+.-.|.-|...+..+.+.-......+-...+-.+.....|+...|-..| +...+++-.+.
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 57889999999999999 77778887777766665432222223333344445556678887766666 66555554333
Q ss_pred cccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005891 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD-SVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 105 ~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~-~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll 183 (671)
. ...+..+.|.|. ..+...-..++..++.+. .++..++...+|+|.|++++.-.-+...||+.|.-||..+.
T Consensus 404 P---~~~I~~i~~~Il----t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 404 P---LQCIVNISPLIL----TADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred c---hhHHHHHhhHHh----cCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 2 223444445544 355555666776777554 57777899999999999999999999999999999999999
Q ss_pred HHhh
Q 005891 184 QEIK 187 (671)
Q Consensus 184 ~~I~ 187 (671)
..+|
T Consensus 477 ~~vG 480 (516)
T KOG2956|consen 477 NRVG 480 (516)
T ss_pred HHHh
Confidence 9888
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.35 E-value=0.0018 Score=55.28 Aligned_cols=85 Identities=25% Similarity=0.250 Sum_probs=66.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCCh
Q 005891 116 IPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (671)
Q Consensus 116 IP~L~e~i-~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~ 194 (671)
||.|.+.+ .+++|.+|..++..+..+ . -|+.++.|..++.|+++.||.+|..+|+.+- -
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---G-------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---T-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---C-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 67888888 889999999999999833 1 2356777777889999999999999888663 2
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 005891 195 GRMAEILVQRAASP-DEFTRLTAITWI 220 (671)
Q Consensus 195 ~~iI~iLl~~~~s~-d~~irl~al~WI 220 (671)
+..++.|...+.+. ++.+|..|+..|
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 66888999988775 566788887655
No 89
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.24 E-value=0.068 Score=63.27 Aligned_cols=326 Identities=18% Similarity=0.231 Sum_probs=171.9
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc-cchhh
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE-SDQFS 111 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e-~~~f~ 111 (671)
.+..-.....++.-.| .|...|.|++...+.+....=..+++.|.+++...+.++.-.+ ..|.++. +..+ .+.-.
T Consensus 252 ~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS--i~~ENK~~m~ 328 (708)
T PF05804_consen 252 LKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS--IFKENKDEMA 328 (708)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 3455555566666666 5667788988765544433335788889998877666666555 4444443 1111 11223
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch--hHHh--chHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--DMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~--~li~--~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
-..++|.|...+...+...+..++..+.+|..-++. .++. .+|.+.+ ++.|++ .|..|...|-.+...=+
T Consensus 329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~----LL~d~~--~~~val~iLy~LS~dd~ 402 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVE----LLKDPN--FREVALKILYNLSMDDE 402 (708)
T ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHH----HhCCCc--hHHHHHHHHHHhccCHh
Confidence 456899999999999999999999999988765542 2333 5565554 777654 44444444444432111
Q ss_pred cCCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhh--------cCcCc-------ccchHhHHHHHhhhhcCCcH
Q 005891 188 NSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKL--------GGDQL-------VPYYADILGAILPCISDKEE 251 (671)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~-s~d~~irl~al~WI~~~~~l--------~~~~l-------~pflp~LLp~LL~~Lsd~~~ 251 (671)
....+...+.+|.+++.+. .+++.+...++..+.++..- .+..+ ..+-..++=-++.+++..++
T Consensus 403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDG 482 (708)
T ss_pred hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1111122234444444332 23333332221111111100 01111 01111122234444554444
Q ss_pred hHHHHHHHHHHHHHHhcCCCC-----------------CCCChH------hHHHHHHHhcCCC--cHHHHHHHHHHHHHH
Q 005891 252 KIRVVARETNEELRAIKADPA-----------------DGFDVG------PILSIATRQLSSE--WEATRIEALHWISTL 306 (671)
Q Consensus 252 eIR~~A~~~n~~L~~~i~~~~-----------------~~~dl~------~il~~L~~~L~~~--~~~tRiaaL~WL~~L 306 (671)
..+.........+.+.+.... .+.++. .+++.+...+... .....+.+..|++.+
T Consensus 483 ~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtl 562 (708)
T PF05804_consen 483 PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTL 562 (708)
T ss_pred hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 444444444444444433211 123332 4556677777532 345677777888876
Q ss_pred HhhChhhHhhh--hhHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhccchHHH------HHHHHHhhccccch
Q 005891 307 LNRHRTEVLHF--LNDIFDTLLKALSDP--SDEVVLLVLEVHACIAKDLQHFRQ------LVVFLVHNFRVDNS 370 (671)
Q Consensus 307 ~~~~p~~i~~~--l~~l~p~LL~~LsD~--s~eV~~~~l~lLa~Is~~~~~F~~------fm~~LL~lf~~d~~ 370 (671)
+.- ++-.+. -.++++.|+..|+.. +++.|...+.++.++-.++.-.+. ...-|+.++++.+.
T Consensus 563 a~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~ 634 (708)
T PF05804_consen 563 ASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNA 634 (708)
T ss_pred HCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCH
Confidence 642 222222 247788888888664 488888888888888744333222 44556666654433
No 90
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.21 E-value=0.019 Score=56.58 Aligned_cols=111 Identities=20% Similarity=0.163 Sum_probs=87.5
Q ss_pred cHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhc
Q 005891 250 EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 329 (671)
Q Consensus 250 ~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L 329 (671)
+|.||.-+..+.+.|..-... -+++.++.+...|.|+++.+|..|+.-+.+|... ++...-+.++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 467888888887777654432 2467788999999999999999999998888765 44445566778888999
Q ss_pred CCCCHHHHHHHHHHHHHHhhc--cchHHHHHHHHHhhcccc
Q 005891 330 SDPSDEVVLLVLEVHACIAKD--LQHFRQLVVFLVHNFRVD 368 (671)
Q Consensus 330 sD~s~eV~~~~l~lLa~Is~~--~~~F~~fm~~LL~lf~~d 368 (671)
.|++++|+..|...+.+++.. +.-|...+..++..|.+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 999999999999999999954 666777777777777653
No 91
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.96 Score=54.43 Aligned_cols=215 Identities=18% Similarity=0.230 Sum_probs=127.9
Q ss_pred hhhHHhHhhhHHHH---HhccCCCCHH---------HHH------------HHHHHHHHHHHHhc-chh----hhhHHHH
Q 005891 24 FYSETILQQIVPPV---LNSFSDQDSR---------VRY------------YACEALYNIAKVVR-GDF----IIFFNQI 74 (671)
Q Consensus 24 ~~~~~yl~~Ii~pv---L~~l~D~d~r---------VR~------------~A~eaL~nI~Kv~~-~~i----l~~f~eI 74 (671)
..+.+++..|+.-| +-|++|.|.+ +|. +|+..+-..+..-| ++. +.+..+|
T Consensus 339 kll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~I 418 (1010)
T KOG1991|consen 339 KLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDI 418 (1010)
T ss_pred HHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence 34467777777555 4677776543 443 23333333332234 333 3444455
Q ss_pred HHHHHHh-hcCCchHHHHHH-HHHHHHHHHhhcccc-------hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 005891 75 FDALCKL-SADSDANVQSAA-HLLDRLVKDIVTESD-------QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP 145 (671)
Q Consensus 75 f~~L~kL-~~D~d~~Vr~gA-~~LdrllKdIv~e~~-------~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip 145 (671)
|...-.- ....++.-|.|| ..+..++ ++..+.+ .|-+++++|. +.++-=+.|.-+|..++.+.++-
T Consensus 419 l~~~~~~~~~~~~~rqkdGAL~~vgsl~-~~L~K~s~~~~~mE~flv~hVfP~----f~s~~g~Lrarac~vl~~~~~~d 493 (1010)
T KOG1991|consen 419 LTRYKEASPPNKNPRQKDGALRMVGSLA-SILLKKSPYKSQMEYFLVNHVFPE----FQSPYGYLRARACWVLSQFSSID 493 (1010)
T ss_pred HHhhcccCCCccChhhhhhHHHHHHHHH-HHHccCCchHHHHHHHHHHHhhHh----hcCchhHHHHHHHHHHHHHHhcc
Confidence 4443332 223355678888 6666666 5665432 2444444444 45566689999999999887542
Q ss_pred chhHHhchHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhhcC---CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005891 146 DIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQRAASPDEFTRLTAITWIN 221 (671)
Q Consensus 146 ~~~li~~Lp~fL~gLf~lL~-D~~~eVR~~a~~~L~~ll~~I~~~---~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~ 221 (671)
=.+ -..+-+.++...+.|. |+.--||..|.-+|..|+..-+.. ...+++.++..++.-.+..+-+.--. -|.
T Consensus 494 f~d-~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~---vme 569 (1010)
T KOG1991|consen 494 FKD-PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN---VME 569 (1010)
T ss_pred CCC-hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH---HHH
Confidence 111 1235556677666666 899999999999999998766532 12356777777777666654433222 344
Q ss_pred HHHhhcCcCcccchHhHHH----HHhhhhc
Q 005891 222 EFVKLGGDQLVPYYADILG----AILPCIS 247 (671)
Q Consensus 222 ~~~~l~~~~l~pflp~LLp----~LL~~Ls 247 (671)
.|+.-.++.+.||-+++.. ..++++.
T Consensus 570 ~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 570 KIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 5666677788888776654 4455554
No 92
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.33 Score=55.14 Aligned_cols=364 Identities=16% Similarity=0.131 Sum_probs=205.7
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhh
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFS 111 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~ 111 (671)
.+-=.++..|+.+|.-.|...--++..+.++.. +++...+.|..-+... .+-.||-.| +..+.. ++.+...++
T Consensus 65 ~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~te-dvlm~tssiMkD~~~g---~~~~~kp~A--iRsL~~-Vid~~tv~~ 137 (898)
T COG5240 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTE-DVLMGTSSIMKDLNGG---VPDDVKPMA--IRSLFS-VIDGETVYD 137 (898)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcch-hhhHHHHHHHHhhccC---CccccccHH--HHHHHH-hcCcchhhh
Confidence 344567899999999999977777766665433 3332233333333222 222455444 222322 332232333
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCCh-----------HHHHHHHHHHH
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH-----------EIRQQADSALW 180 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~-----------eVR~~a~~~L~ 180 (671)
|=-.+...+-++.+.+|..++-.-+.+..+.....-.++.+.-+....+-.-|+. -+-+ -.+|+
T Consensus 138 ---~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isq--YHalG 212 (898)
T COG5240 138 ---FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQ--YHALG 212 (898)
T ss_pred ---HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHH--HHHHH
Confidence 3344556677788888888776666666555555555555444443322222211 0110 01111
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHH
Q 005891 181 EFLQEIKNSPSVDYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVV 256 (671)
Q Consensus 181 ~ll~~I~~~~~~d~~~iI~iLl~~~~s~d----~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~ 256 (671)
-+- .+++ -| .-....++++...+. ......-+..+.+++.-.+ .++..+.|.+-.++++..+-+.-.
T Consensus 213 lLy-q~kr---~d-kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~----q~~~q~rpfL~~wls~k~emV~lE 283 (898)
T COG5240 213 LLY-QSKR---TD-KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENS----QALLQLRPFLNSWLSDKFEMVFLE 283 (898)
T ss_pred HHH-HHhc---cc-HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhCh----HHHHHHHHHHHHHhcCcchhhhHH
Confidence 111 1111 01 001233444433332 1111112223333333222 246777888888888877666655
Q ss_pred HHHHHHHHHH-hcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHH
Q 005891 257 ARETNEELRA-IKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE 335 (671)
Q Consensus 257 A~~~n~~L~~-~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~e 335 (671)
+.++...+.. .++ .-++++++..|.-.|.+....+|-+|+.-|..|+.+.|..+.--..++ =...+|..-.
T Consensus 284 ~Ar~v~~~~~~nv~----~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ev----EsLIsd~Nr~ 355 (898)
T COG5240 284 AARAVCALSEENVG----SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEV----ESLISDENRT 355 (898)
T ss_pred HHHHHHHHHHhccC----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhH----HHHhhccccc
Confidence 5554444321 222 245789999999999999999999999999999999999876443332 2234566655
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHhhc---cccchhhhhHHHHHHHHHhccCChH--HHHHHHHHhhcccCChhHHH
Q 005891 336 VVLLVLEVHACIAKDLQHFRQLVVFLVHNF---RVDNSLLEKRGALIIRRLCVLLDAE--RVYRELSTILEGEADLDFAC 410 (671)
Q Consensus 336 V~~~~l~lLa~Is~~~~~F~~fm~~LL~lf---~~d~~lLe~Rg~~IIR~Lc~~L~~E--~Iy~~la~iL~~~~dl~F~~ 410 (671)
+-.-|..+|-+-+ +++.-+..|.-+..+. +++=|.. .-.-+|-||.+.+.+ .+..-|+++|.++...+|-.
T Consensus 356 IstyAITtLLKTG-t~e~idrLv~~I~sfvhD~SD~FKiI---~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~ 431 (898)
T COG5240 356 ISTYAITTLLKTG-TEETIDRLVNLIPSFVHDMSDGFKII---AIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKK 431 (898)
T ss_pred chHHHHHHHHHcC-chhhHHHHHHHHHHHHHhhccCceEE---eHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHH
Confidence 5555555554443 3444444444444443 3342221 233589999999886 45566888998999999999
Q ss_pred HHHHHHHHHhccchhHHH
Q 005891 411 TMVQALNLILLTSSELSE 428 (671)
Q Consensus 411 ~mVq~Ln~iLLTs~El~~ 428 (671)
-||..+.-+.=.-||-.+
T Consensus 432 ~~Vdaisd~~~~~p~skE 449 (898)
T COG5240 432 YMVDAISDAMENDPDSKE 449 (898)
T ss_pred HHHHHHHHHHhhCchHHH
Confidence 999999888877666554
No 93
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.07 E-value=0.36 Score=62.54 Aligned_cols=318 Identities=12% Similarity=0.143 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh----cCCchHHHHHHHHHHHH---HHHhhc--ccchhh-hhhhHHH
Q 005891 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS----ADSDANVQSAAHLLDRL---VKDIVT--ESDQFS-IEEFIPL 118 (671)
Q Consensus 49 R~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~----~D~d~~Vr~gA~~Ldrl---lKdIv~--e~~~f~-L~~fIP~ 118 (671)
|.+....|..|+..-.+-+...|..+|+.+...+ ..++..|+- -++|.+ .-.... |...|. -..|+-+
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~--fAidsLrQLs~kfle~eEL~~f~FQkefLkP 1186 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAI--FAMDSLRQLSMKFLEREELANYNFQNEFMKP 1186 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHH--HHHHHHHHHHHHhcchhhhhchhHHHHHHHH
Confidence 6777777666665433445556778777776532 343444433 445532 222221 111222 2356677
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc-CCC---CC
Q 005891 119 LRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN-SPS---VD 193 (671)
Q Consensus 119 L~e~i~-~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~-~~~---~d 193 (671)
+...|. ..+..+|.+++.++..+....+..+-.=...++..+-....|.++++-..|-+.+..+..+.-. -+. -.
T Consensus 1187 fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1187 FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 766665 4778999999999999887766666666777777666667788888877777777766654321 111 23
Q ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHh-h---c--------------------------------CcCcccchH
Q 005891 194 YGRMAEILVQRAASP-DEFTRLTAITWINEFVK-L---G--------------------------------GDQLVPYYA 236 (671)
Q Consensus 194 ~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~-l---~--------------------------------~~~l~pflp 236 (671)
+..+|..+.+.+... +..+-++|+..+..+.. + . .++...+.=
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 677888888777554 35566777664432211 1 0 000011222
Q ss_pred hHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC--CCCCC--hHhH----HHHHHHhcC-------------------
Q 005891 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADP--ADGFD--VGPI----LSIATRQLS------------------- 289 (671)
Q Consensus 237 ~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~--~~~~d--l~~i----l~~L~~~L~------------------- 289 (671)
.++-++-....|..+|||.-|.++.-..++..+.. .+.|+ +..+ ++.+.....
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGEL 1426 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccch
Confidence 33444444455889999999988776666554431 11232 2322 233322110
Q ss_pred -CCcH--HHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-h-----ccchHHHHHHH
Q 005891 290 -SEWE--ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-K-----DLQHFRQLVVF 360 (671)
Q Consensus 290 -~~~~--~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is-~-----~~~~F~~fm~~ 360 (671)
...| .|-.-||.-+..|...+-+.+.+.+++++..|..|...+.+.+....+..|.++. . ++++-+.++..
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~ 1506 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLS 1506 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 0123 5677777778888888888888899999999999999999988888888887766 2 34555678888
Q ss_pred HHhhcccc
Q 005891 361 LVHNFRVD 368 (671)
Q Consensus 361 LL~lf~~d 368 (671)
+.++|...
T Consensus 1507 ~~~lf~~T 1514 (1780)
T PLN03076 1507 LKEAANAT 1514 (1780)
T ss_pred HHHHHHHh
Confidence 88877654
No 94
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.03 E-value=0.0073 Score=59.04 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=98.4
Q ss_pred cccchHhHHHHHhhhhcC------------------CcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCc
Q 005891 231 LVPYYADILGAILPCISD------------------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW 292 (671)
Q Consensus 231 l~pflp~LLp~LL~~Lsd------------------~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~ 292 (671)
+.|+++.++|.+..-+.- ..-++|.+|-++..++++.+.+ .+|+.++++.+...+.| .
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~---~~~~~~~~~~v~~GL~D-~ 78 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS---RIDISEFLDRVEAGLKD-E 78 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS---SS-HHHHHHHHHHTTSS--
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHhhcCC-c
Confidence 468899999999876652 2348999999999999997654 67899999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcC----CC--------CHHHHHHHHHHHHHHh------hccc-h
Q 005891 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS----DP--------SDEVVLLVLEVHACIA------KDLQ-H 353 (671)
Q Consensus 293 ~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls----D~--------s~eV~~~~l~lLa~Is------~~~~-~ 353 (671)
..+|+-|..-+..+...+|..+.++++.+.+.+-+.|+ +. ..|....++++...+. +... .
T Consensus 79 ~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~ 158 (169)
T PF08623_consen 79 HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNK 158 (169)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-H
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHH
Confidence 88999999999999999999999999999999988884 32 2345666777777773 1233 6
Q ss_pred HHHHHHHH
Q 005891 354 FRQLVVFL 361 (671)
Q Consensus 354 F~~fm~~L 361 (671)
|..|+..+
T Consensus 159 ~~~f~~~i 166 (169)
T PF08623_consen 159 WNEFVEWI 166 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 95
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.01 E-value=0.85 Score=54.37 Aligned_cols=348 Identities=15% Similarity=0.186 Sum_probs=175.4
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
-..|...++..+.|++.++|.+++.++..|+.+ .--..|+|++|.+.+++++++.+--.|| ..|+.+..|.+.+..
T Consensus 88 K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~---D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~ 164 (1005)
T KOG2274|consen 88 KALIREQLLNLLDDSNSKIRSAVAYAISSIAAV---DYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEM 164 (1005)
T ss_pred HHHHHHHHHhhhhccccccchHHHHHHHHHHhc---cCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 345667778888899999999999998888743 2234589999999999998888777788 888887777764432
Q ss_pred hhhhhhhHHHHHHhhc---CCCHHHHHHHH------HHHHHhhcCCchh-------HHhchHHHHHHHHHhc--CCC-Ch
Q 005891 109 QFSIEEFIPLLRERMN---VLNPYVRQFLV------GWITVLDSVPDID-------MLGFLPDFLDGLFNML--SDS-SH 169 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~---~~np~vR~~al------swL~~L~~ip~~~-------li~~Lp~fL~gLf~lL--~D~-~~ 169 (671)
.+..+..+|.....+. ..+-..|..++ +++..+...-... +...++.|.+-+-..+ +|. +-
T Consensus 165 ~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~ 244 (1005)
T KOG2274|consen 165 FFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGSDF 244 (1005)
T ss_pred hcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchH
Confidence 2223333333322222 12222333222 1111111111111 2344555555443222 333 23
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCh------------HHHHHHHHHhcCCC----------CHHHH------HHHHHHHH
Q 005891 170 EIRQQADSALWEFLQEIKNSPSVDY------------GRMAEILVQRAASP----------DEFTR------LTAITWIN 221 (671)
Q Consensus 170 eVR~~a~~~L~~ll~~I~~~~~~d~------------~~iI~iLl~~~~s~----------d~~ir------l~al~WI~ 221 (671)
-.|.....++..+.+.++......+ ..+..++.....+. +++.. ...++.++
T Consensus 245 ~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s 324 (1005)
T KOG2274|consen 245 SLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLS 324 (1005)
T ss_pred HHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHH
Confidence 5667777888888887764321111 12223333332221 11111 12233344
Q ss_pred HHHhhc--CcCcccchHhHHHHHhhhhcCC------------------cH--hHHHHHHHHHHHHHHhcCCCCCCCChHh
Q 005891 222 EFVKLG--GDQLVPYYADILGAILPCISDK------------------EE--KIRVVARETNEELRAIKADPADGFDVGP 279 (671)
Q Consensus 222 ~~~~l~--~~~l~pflp~LLp~LL~~Lsd~------------------~~--eIR~~A~~~n~~L~~~i~~~~~~~dl~~ 279 (671)
.++... ...+..-+|++++.+.-.+.-+ ++ ..|..............+.. -...
T Consensus 325 ~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~----~i~~ 400 (1005)
T KOG2274|consen 325 TIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNE----GINP 400 (1005)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccch----hhhH
Confidence 333321 1111112344444332222111 11 11111111111111111111 1123
Q ss_pred HHHHHHHhc---------CCC-cHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhc-CCCCHHHHHHHHHHHHHHh
Q 005891 280 ILSIATRQL---------SSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 280 il~~L~~~L---------~~~-~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L-sD~s~eV~~~~l~lLa~Is 348 (671)
+......++ ..+ .|....+++.|....... .....++..+.-.+...+ ..++|.....+.|.+++++
T Consensus 401 i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs 478 (1005)
T KOG2274|consen 401 IQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFS 478 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHH
Confidence 333332222 222 466678888888777622 112334444444444444 4567888889999999999
Q ss_pred h----ccchHHHHHHHHHhhcccc-chhhhhHHHHHHHHHhccCCh
Q 005891 349 K----DLQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLCVLLDA 389 (671)
Q Consensus 349 ~----~~~~F~~fm~~LL~lf~~d-~~lLe~Rg~~IIR~Lc~~L~~ 389 (671)
+ +.+.+..|+...+.....+ .....-+ .+|.+|-..+.
T Consensus 479 ~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~---a~~~~~~~~~~ 521 (1005)
T KOG2274|consen 479 SSTVINPQLLQHFLNATVNALTMDVPPPVKIS---AVRAFCGYCKV 521 (1005)
T ss_pred hhhccchhHHHHHHHHHHHhhccCCCCchhHH---HHHHHHhccCc
Confidence 5 5678889999999987554 4444433 45555544433
No 96
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.98 E-value=0.014 Score=61.92 Aligned_cols=145 Identities=21% Similarity=0.243 Sum_probs=106.4
Q ss_pred hhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchh---h---hhHHHHHHHHHHhhc--------CCchHH
Q 005891 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF---I---IFFNQIFDALCKLSA--------DSDANV 89 (671)
Q Consensus 24 ~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i---l---~~f~eIf~~L~kL~~--------D~d~~V 89 (671)
..++.+..-++|++|..+.|.+..+|..+|..+..+.+.+.... + ..+.-+.++|..++. |....+
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 34578899999999999999999999999999999987655433 2 335667777887776 666666
Q ss_pred HHHH-HHHHHHHHHhhcccchhhhhhhHHHHHH----hh-cCC---CHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHH
Q 005891 90 QSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRE----RM-NVL---NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (671)
Q Consensus 90 r~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e----~i-~~~---np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gL 160 (671)
-..| .++-++++-.-...+..-...+.-.+.+ -+ +.. .+.++.++++-+..+.+..|.....|+..+++-|
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666 6777776633222111112222223333 22 233 4999999999999999999999999999999999
Q ss_pred HHhcCCCC
Q 005891 161 FNMLSDSS 168 (671)
Q Consensus 161 f~lL~D~~ 168 (671)
..++.||.
T Consensus 271 ~~~l~npf 278 (282)
T PF10521_consen 271 SQILENPF 278 (282)
T ss_pred HHHhcCCC
Confidence 99999885
No 97
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.12 Score=58.49 Aligned_cols=263 Identities=14% Similarity=0.056 Sum_probs=154.1
Q ss_pred hHHHHHHHHHHhhcCCchHHH-HHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005891 70 FFNQIFDALCKLSADSDANVQ-SAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (671)
Q Consensus 70 ~f~eIf~~L~kL~~D~d~~Vr-~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~ 148 (671)
.+.++-|-|..-++|.-..|. ++|.++-++....++ ...++.-+.-|+..+.+.+.-.|-.++-.++.++-..+..
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~---~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG---SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce
Confidence 344555666666677655554 334555555444443 3457888889999999999999999999999998777765
Q ss_pred HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 005891 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (671)
Q Consensus 149 li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~ 228 (671)
+...=+++=. +.+|.|+.+-.-|.. .+++.= .+-.++.+++.+...+++-....+..++..+..++-..|
T Consensus 338 v~vcN~evEs----LIsd~Nr~IstyAIT---tLLKTG---t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp 407 (898)
T COG5240 338 VSVCNKEVES----LISDENRTISTYAIT---TLLKTG---TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFP 407 (898)
T ss_pred eeecChhHHH----HhhcccccchHHHHH---HHHHcC---chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCc
Confidence 5555555544 788999888776644 555421 223466666666666655432222222222222222211
Q ss_pred c----------------CcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHh-------------cCCC-CCCCChH
Q 005891 229 D----------------QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI-------------KADP-ADGFDVG 278 (671)
Q Consensus 229 ~----------------~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~-------------i~~~-~~~~dl~ 278 (671)
. .=+.|-.-++.++..+|.+ +|+-|+.|.+..-++.+- .++. +.+-.-+
T Consensus 408 ~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~-~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~ 486 (898)
T COG5240 408 SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN-DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPG 486 (898)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcc
Confidence 1 1123444555666665553 344455554433332222 1111 1111122
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 279 ~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
..+..+-.++--++..+|-+|+..|..++-...+.+. -..+...|-+||+|.+++||..|.-++..+-
T Consensus 487 ~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~--~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS--PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc--HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 2233333333335677899999999888877766655 2345566778999999999998887766554
No 98
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.89 E-value=0.025 Score=59.03 Aligned_cols=183 Identities=20% Similarity=0.218 Sum_probs=117.0
Q ss_pred HHHHHhccC-CCCHHHHHHHHHHHHHHHHH-hcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchh
Q 005891 34 VPPVLNSFS-DQDSRVRYYACEALYNIAKV-VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (671)
Q Consensus 34 i~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv-~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f 110 (671)
+..++..+. .+|+.++..|..++.|.+.- ...++... -..++.+.+++.++++.||.-| .+|+.+.- ...+..
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~---~~en~~ 89 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSV---NDENQE 89 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCC---ChhhHH
Confidence 456667776 46899999999999997532 11122211 1557778899999999999877 66665422 111234
Q ss_pred hhhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCch--hHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 111 SIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~--~np~vR~~alswL~~L~~ip~~--~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
.+..+++.+.+.+.+ -|..+.+..+..|..+.-..+. -+..++|.|+ .++.-.+..+|..+-.+|..+.+.-
T Consensus 90 ~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll----~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLL----SLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHH----HHHHcCChHHHHHHHHHHHHhccCH
Confidence 567789998887655 4788988888999888533322 2455555554 5887788889988877776665411
Q ss_pred hcCCCCC--hHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhh
Q 005891 187 KNSPSVD--YGRMAEILVQRAASP-DEFTRLTAITWINEFVKL 226 (671)
Q Consensus 187 ~~~~~~d--~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l 226 (671)
... .+ -.+....++.-.+.. +.++-+.++.|..++.+-
T Consensus 166 ~~~--~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMT--RELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHH--HHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 100 01 012333444444443 567778888888888664
No 99
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.15 Score=59.90 Aligned_cols=274 Identities=16% Similarity=0.204 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHH-HhhcCCchHH--HHHHH-HHHHHH-HHhhcc-----------cchhhh
Q 005891 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALC-KLSADSDANV--QSAAH-LLDRLV-KDIVTE-----------SDQFSI 112 (671)
Q Consensus 49 R~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~-kL~~D~d~~V--r~gA~-~Ldrll-KdIv~e-----------~~~f~L 112 (671)
|.+||+-+..++++..+.+...|......+. +..+|+..+- |..|. +..++. |.-.+. ..+|-.
T Consensus 379 RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 6788999999998887777666666666655 4556665544 33332 211111 100000 124666
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch-hHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~-~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~ 191 (671)
..++|-|...=...+|-.|..++..+..+-+.++. .++.++|.++. .+.-+..-|-.-|..++++++-.-.+++.
T Consensus 459 ~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~----~L~a~s~vvhsYAA~aiEkil~vre~~~~ 534 (960)
T KOG1992|consen 459 NQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIR----FLEAESRVVHSYAAIAIEKLLTVRENSNA 534 (960)
T ss_pred HHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHH----hccCcchHHHHHHHHHHHhccccccCccc
Confidence 77777776654457788999999999988776654 47778887777 77778889999999999999876554221
Q ss_pred -----CChHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcC--C---cHhHHHHH
Q 005891 192 -----VDYGRMAEILVQR----AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD--K---EEKIRVVA 257 (671)
Q Consensus 192 -----~d~~~iI~iLl~~----~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd--~---~~eIR~~A 257 (671)
-++...+..++.. ...++..--...+..|..++.+.++...||.|.+++.+-..+.. . +|.--.--
T Consensus 535 ~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYL 614 (960)
T KOG1992|consen 535 KIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYL 614 (960)
T ss_pred cccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHH
Confidence 1344433444333 33333211222445566667777878888888888766554431 1 11100000
Q ss_pred HHHHHHHH-HhcCCCCCCC-Ch-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHH
Q 005891 258 RETNEELR-AIKADPADGF-DV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (671)
Q Consensus 258 ~~~n~~L~-~~i~~~~~~~-dl-~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL 326 (671)
-++...+. +....+...+ .+ .+++++...-|..+-.+--=.+++-+..+.+.+...+-+....++|.++
T Consensus 615 FEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 615 FESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 01111111 1111111111 12 3555555555554444445566777777777776655555555665554
No 100
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.25 Score=57.62 Aligned_cols=362 Identities=17% Similarity=0.206 Sum_probs=197.5
Q ss_pred HHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-chhhhhHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 005891 19 YADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFFNQIFDALCKLSADSDANVQSAAHLLD 97 (671)
Q Consensus 19 ~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~-~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~Ld 97 (671)
+.--|..+..-+.+|+.-++..=...-.++=||--|.+ -|-.. |..+.-.--+.+++-+=++.|+.=+|+.. |-
T Consensus 47 ~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~v---PKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~T--LR 121 (948)
T KOG1058|consen 47 LMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELV---PKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGST--LR 121 (948)
T ss_pred HHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHc---cccCCCcccHHHHHHHHHHHhhhccCchHhhcchh--hh
Confidence 33344555555556666665554444455555444432 12111 22222223445566666777777788554 22
Q ss_pred HHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHH
Q 005891 98 RLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADS 177 (671)
Q Consensus 98 rllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~ 177 (671)
=++| . ..+--++.++|.++.++..++++||..++-+|..+-.. ...+++=-|+++... +..+.++..++.|
T Consensus 122 FLck--L--kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~f--L~~e~DpsCkRNA-- 192 (948)
T KOG1058|consen 122 FLCK--L--KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESF--LLTEQDPSCKRNA-- 192 (948)
T ss_pred hhhh--c--CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHH--HHhccCchhHHHH--
Confidence 2222 1 12345899999999999999999999999888776655 345666666666643 3567777777754
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHH
Q 005891 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASP---DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR 254 (671)
Q Consensus 178 ~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~---d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR 254 (671)
|+-.+. .|-+.-+.++..+..+- ++..++..++.|...+.-.|..- .+.+..+...|..+.+.++
T Consensus 193 ----Fi~L~~----~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~----~~~i~~i~~lL~stssaV~ 260 (948)
T KOG1058|consen 193 ----FLMLFT----TDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK----ARYIRCIYNLLSSTSSAVI 260 (948)
T ss_pred ----HHHHHh----cCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh----hHHHHHHHHHHhcCCchhh
Confidence 332221 56666777777665443 46777777888877776444332 2334444444554455544
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC
Q 005891 255 VVARETNEELRAIKADPADGFDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (671)
Q Consensus 255 ~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~-~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s 333 (671)
-.|. .++..+..+ .-.+..-.+.+.+.+.+ +....+.-.++-|..+.... ...+.+++--+|+.|+-++
T Consensus 261 fEaa---~tlv~lS~~---p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~----~~il~~l~mDvLrvLss~d 330 (948)
T KOG1058|consen 261 FEAA---GTLVTLSND---PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALH----EKILQGLIMDVLRVLSSPD 330 (948)
T ss_pred hhhc---ceEEEccCC---HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhh----HHHHHHHHHHHHHHcCccc
Confidence 3332 111111111 00111222222222211 11224555555555555222 2335677778889999999
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHhhcc-ccchhhhhHH---HHHHHHHhccC---C--hHHHHHHHHHhhccc-
Q 005891 334 DEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR-VDNSLLEKRG---ALIIRRLCVLL---D--AERVYRELSTILEGE- 403 (671)
Q Consensus 334 ~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~-~d~~lLe~Rg---~~IIR~Lc~~L---~--~E~Iy~~la~iL~~~- 403 (671)
=+||++++.+--.+++ ...+.+++.-|-+.+- ++..-.+.-| .+.|+.+...- + ++.+-..+-+.+.+.
T Consensus 331 ldvr~Ktldi~ldLvs-srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N 409 (948)
T KOG1058|consen 331 LDVRSKTLDIALDLVS-SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSN 409 (948)
T ss_pred ccHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCC
Confidence 9999999998777664 3567777777777663 2222122222 33455443321 1 134444444444432
Q ss_pred -----CChhHHHHHHHHHH
Q 005891 404 -----ADLDFACTMVQALN 417 (671)
Q Consensus 404 -----~dl~F~~~mVq~Ln 417 (671)
.=+.|++-.++.+-
T Consensus 410 ~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 410 EAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 22667776666653
No 101
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.66 E-value=0.062 Score=56.18 Aligned_cols=177 Identities=19% Similarity=0.243 Sum_probs=118.4
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--chhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~--~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
.++.|..-+.|+++.||..|..++.|++-... ..+..|++++...... ..-+..|+-+| .+|..+ -+++...
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s--~~lns~~Q~agLrlL~nL---tv~~~~~ 129 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVS--SPLNSEVQLAGLRLLTNL---TVTNDYH 129 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHcc---CCCcchh
Confidence 67899999999999999999999999864322 2333454444433322 22366777666 555444 2333223
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch--hHHhchHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHh
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~--~li~~Lp~fL~gLf~lL~D-~~~eVR~~a~~~L~~ll~~I 186 (671)
.-+...+|.+.+.+...+..+|..++..+..|..-|.. +++.- .-+..+..++.. .+.++-..+...+..+.+.+
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~--q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA--QVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc--cchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 45667788888888899999999999999999887763 33322 123333335544 46788877778778887777
Q ss_pred hcCCC------C----------ChHHHHHHHHHhcCCCCHHHHHHH
Q 005891 187 KNSPS------V----------DYGRMAEILVQRAASPDEFTRLTA 216 (671)
Q Consensus 187 ~~~~~------~----------d~~~iI~iLl~~~~s~d~~irl~a 216 (671)
++... + +.+.+...|..-..++|++||..+
T Consensus 208 ~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 208 KKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred CcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 65421 1 235577778888888999998754
No 102
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.66 E-value=0.16 Score=57.76 Aligned_cols=211 Identities=17% Similarity=0.147 Sum_probs=133.1
Q ss_pred HhhhHHHHHhccCCC---CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcc
Q 005891 30 LQQIVPPVLNSFSDQ---DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE 106 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~---d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e 106 (671)
...++..||+|=..+ |.-+|..+.-.-|..-+ -+++......+|..+.+.+..++..||.-.-.+-+++-|.|.+
T Consensus 47 flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~--dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 47 FLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPD--DPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred HHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCC--ChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch
Confidence 445677788887755 44445443222122222 1244555678889999999999999999885555666778888
Q ss_pred cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
.++.--+.++..|.+|++|..+.||.-++-++.-+....+.+=-..-..++. -+=.||+.|||+.|.- . |
T Consensus 125 IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~---~vqnDPS~EVRr~all------n-i 194 (885)
T COG5218 125 IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKD---IVQNDPSDEVRRLALL------N-I 194 (885)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHH---HHhcCcHHHHHHHHHH------H-e
Confidence 7666778999999999999999999999999998876655432222221211 2338999999998632 2 2
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~-WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
.. | .+-.|++++++.+.+-..|.-.-. .+..+ +......--|+++ .+-..+.|.+..+|.++.++.
T Consensus 195 ~v----d-nsT~p~IlERarDv~~anRr~vY~r~Lp~i---Gd~~~lsi~kri~-l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 195 SV----D-NSTYPCILERARDVSGANRRMVYERCLPRI---GDLKSLSIDKRIL-LMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred ee----C-CCcchhHHHHhhhhhHHHHHHHHHHHhhhh---cchhhccccceeh-hhhhcchhhhhhHHHHHHHHH
Confidence 11 1 234577888888877777654322 22222 1111111223333 344466777777877766544
No 103
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.64 E-value=0.86 Score=56.97 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=103.2
Q ss_pred HhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHH
Q 005891 21 DLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (671)
Q Consensus 21 ~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~Ldrl 99 (671)
+....+..-.+..+..|+..++.+...+|.-|..++.+|+.+ ...++ .-+++-.++-.-+.|+..+||+|| +++.|.
T Consensus 805 a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~-Dp~vL-~~~dvq~~Vh~R~~DssasVREAaldLvGrf 882 (1692)
T KOG1020|consen 805 AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEA-DPSVL-SRPDVQEAVHGRLNDSSASVREAALDLVGRF 882 (1692)
T ss_pred HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhc-ChHhh-cCHHHHHHHHHhhccchhHHHHHHHHHHhhh
Confidence 333344444555677778888888999999999999998752 33444 335777777778889999999999 777776
Q ss_pred HHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHH
Q 005891 100 VKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (671)
Q Consensus 100 lKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~-ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~ 178 (671)
+- + ..-...++-..+.+||.|+.-.||+-++..+..+.. .|+. .-+|+....+..-.+|....|.+.+++.
T Consensus 883 vl---~--~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf---~~i~~~cakmlrRv~DEEg~I~kLv~et 954 (1692)
T KOG1020|consen 883 VL---S--IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF---SKIVDMCAKMLRRVNDEEGNIKKLVRET 954 (1692)
T ss_pred hh---c--cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh---hhHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 43 2 122466777778888888888888888888877653 3432 2234444444555567766677777665
Q ss_pred HHHH
Q 005891 179 LWEF 182 (671)
Q Consensus 179 L~~l 182 (671)
+..+
T Consensus 955 f~kl 958 (1692)
T KOG1020|consen 955 FLKL 958 (1692)
T ss_pred HHHH
Confidence 5444
No 104
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.58 E-value=0.42 Score=55.07 Aligned_cols=277 Identities=16% Similarity=0.147 Sum_probs=136.4
Q ss_pred HHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHH
Q 005891 18 LYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLL 96 (671)
Q Consensus 18 ~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~L 96 (671)
-+.+++..+...-+..+...+....|.|..||..|...|-.++|.. -.+...|.|+|+++++..|+....+. ..|
T Consensus 45 ~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 45 FIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLVQLLQTDDPVELDAVKNSL 120 (556)
T ss_dssp HHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3444555555566778899999999999999999988888887642 23567899999999987776655555 555
Q ss_pred HHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHH-HhhcCCchhHH--hchHHH-HHHHHHhcCCCChHHH
Q 005891 97 DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWIT-VLDSVPDIDML--GFLPDF-LDGLFNMLSDSSHEIR 172 (671)
Q Consensus 97 drllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~-~L~~ip~~~li--~~Lp~f-L~gLf~lL~D~~~eVR 172 (671)
-.+++-= +...+..+...+..- ...+..+|.-++..|. .+..++..-+. .=+.++ .+.+.+.|.|-..+=
T Consensus 121 ~~ll~~d----~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeE- 194 (556)
T PF05918_consen 121 MSLLKQD----PKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEE- 194 (556)
T ss_dssp HHHHHH-----HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHH-
T ss_pred HHHHhcC----cHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHH-
Confidence 5555511 122333333333310 2467789999998885 44444433232 223333 445557888843211
Q ss_pred HHHHHHHHHHHHHhhc----CCCCChHHHHHHHHHhcC--C----CCHH-HHHHHHHHHHHHHh---h--cCcCcccchH
Q 005891 173 QQADSALWEFLQEIKN----SPSVDYGRMAEILVQRAA--S----PDEF-TRLTAITWINEFVK---L--GGDQLVPYYA 236 (671)
Q Consensus 173 ~~a~~~L~~ll~~I~~----~~~~d~~~iI~iLl~~~~--s----~d~~-irl~al~WI~~~~~---l--~~~~l~pflp 236 (671)
-..+-.+++..+. .+....+.+++++.+... . .|++ +. .+|.-+-. . .+..--.|+.
T Consensus 195 ---F~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Id----rli~C~~~Alp~fs~~v~Sskfv~ 267 (556)
T PF05918_consen 195 ---FELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESID----RLISCLRQALPFFSRGVSSSKFVN 267 (556)
T ss_dssp ---HHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHH----HHHHHHHHHGGG-BTTB--HHHHH
T ss_pred ---HHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHH----HHHHHHHHhhHHhcCCCChHHHHH
Confidence 1223355554442 111225778888887653 1 1222 21 12221111 1 1222234555
Q ss_pred hHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC----------CCcHHHHHHHHHHHHHH
Q 005891 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS----------SEWEATRIEALHWISTL 306 (671)
Q Consensus 237 ~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~----------~~~~~tRiaaL~WL~~L 306 (671)
-+..-++|.+.+-.++.|---.++..++....+ ..|..+.++.+-+.|. +-+...-++.|..++.|
T Consensus 268 y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~----~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~L 343 (556)
T PF05918_consen 268 YMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCG----AQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQL 343 (556)
T ss_dssp HHHHHTCCCTT-----HHHHHHHHHHHHHTT--------THHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhhCChHHHHHHHHHHHHHcCCCC----cccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHH
Confidence 566667776665444333322222222222222 3445555555444442 11234466666788888
Q ss_pred HhhChhhHh
Q 005891 307 LNRHRTEVL 315 (671)
Q Consensus 307 ~~~~p~~i~ 315 (671)
..+.|+...
T Consensus 344 a~k~p~~~~ 352 (556)
T PF05918_consen 344 ARKSPNSLN 352 (556)
T ss_dssp HTT-THHHH
T ss_pred hhhCcchhh
Confidence 888877543
No 105
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.57 E-value=0.07 Score=52.04 Aligned_cols=136 Identities=14% Similarity=0.216 Sum_probs=113.9
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-HHhchHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHh
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~-li~~Lp~fL~gLf~lL~D~-~~eVR~~a~~~L~~ll~~I 186 (671)
.-.+.+++-.+...+++.+++.|-..+..+..+....+-+ +..+--.++.+|.+.+..+ .+.+++.|+.+|..+...+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3457888888999999999999999999999888876545 5588899999999999775 4578999999999999988
Q ss_pred hcCCCC-------ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhh
Q 005891 187 KNSPSV-------DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 246 (671)
Q Consensus 187 ~~~~~~-------d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~L 246 (671)
...|.. .++.+++.++...++ ......++.-+..++...|..+.||..++-..+.+.+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 776642 478888888887775 5567788999999999999999999999998888765
No 106
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.57 E-value=0.43 Score=61.83 Aligned_cols=241 Identities=13% Similarity=0.145 Sum_probs=148.7
Q ss_pred hHhhhHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc-
Q 005891 29 ILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT- 105 (671)
Q Consensus 29 yl~~Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~- 105 (671)
+.+.++.|+...+. ..+..||....+++.+++....+.+-.-|..||..+...+.|..+..-.-| +.+..++.|...
T Consensus 1179 FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~ 1258 (1780)
T PLN03076 1179 FQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPY 1258 (1780)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhh
Confidence 44567777766554 456799999999999998876667777899999999988888777665566 777777776443
Q ss_pred --ccchhhhhhhHHHHHHhhcCC-CHHHHHHHHHHHHHh----hc--C------------------------------Cc
Q 005891 106 --ESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVL----DS--V------------------------------PD 146 (671)
Q Consensus 106 --e~~~f~L~~fIP~L~e~i~~~-np~vR~~alswL~~L----~~--i------------------------------p~ 146 (671)
+........+|--+.+..... ++.+-..+++.+..+ .. + ..
T Consensus 1259 l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1338 (1780)
T PLN03076 1259 ITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDK 1338 (1780)
T ss_pred ccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 211223345555555555432 344444444444422 00 0 00
Q ss_pred hhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCC-----hHHHHHHHHHhcCCC-------------
Q 005891 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-----YGRMAEILVQRAASP------------- 208 (671)
Q Consensus 147 ~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d-----~~~iI~iLl~~~~s~------------- 208 (671)
.+...+.=-+|.+|.++..|+..|||..|.+.|-+.+..-|.....+ +..++-.|...++..
T Consensus 1339 ~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~ 1418 (1780)
T PLN03076 1339 DDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQG 1418 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 11122233346667777889999999999999888887776543332 344444443332210
Q ss_pred -----C-HH----HHHHHHHHHHHHHhhcC---cCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcC
Q 005891 209 -----D-EF----TRLTAITWINEFVKLGG---DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (671)
Q Consensus 209 -----d-~~----irl~al~WI~~~~~l~~---~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (671)
+ .+ ...++...+..++++.. +.+-+.+|+++..+..|+.-++..+-..+..|...|+...+
T Consensus 1419 ~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1419 VDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 0 01 12333334444444422 23445688888888889998888888888888887765544
No 107
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=2.3 Score=53.56 Aligned_cols=346 Identities=14% Similarity=0.131 Sum_probs=187.0
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchh---hhhHHHHHHHHHH---hhcCCc-hHHHHHHHHHHHHH
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF---IIFFNQIFDALCK---LSADSD-ANVQSAAHLLDRLV 100 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i---l~~f~eIf~~L~k---L~~D~d-~~Vr~gA~~Ldrll 100 (671)
++..+++...+ |..+|..||-+.+=++.+|-.+..++. -.+..+||..+.+ ++.|+. |.-.+-...|-++.
T Consensus 48 pl~~~l~~~~~--L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~ 125 (1266)
T KOG1525|consen 48 PLADHLIKDFL--LKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLA 125 (1266)
T ss_pred HHHHHHhhHHH--hcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHH
Confidence 34444444432 467788899999889999998876532 2355566665553 445554 44444454554444
Q ss_pred HHh-hcccchhhhhhhHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHH
Q 005891 101 KDI-VTESDQFSIEEFIPLLRERMNV----LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQA 175 (671)
Q Consensus 101 KdI-v~e~~~f~L~~fIP~L~e~i~~----~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a 175 (671)
+-. +-.-...+-+.+++-+...+.+ ..|.---+.+..+..+....+.- =.++|+-+|.=+--+.++.+..|
T Consensus 126 ~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v----~~e~L~~ll~~lv~~~~~~~~~a 201 (1266)
T KOG1525|consen 126 KVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTV----QSELLDVLLENLVKPGRDTIKEA 201 (1266)
T ss_pred HhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHhccCCCCccHHH
Confidence 421 1100112234444444444443 22222222333333322222111 12334444434444445555555
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHH
Q 005891 176 DSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (671)
Q Consensus 176 ~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~ 255 (671)
+..-..++..+......++..++.--+..-.+.---++...-+-|.++-.+.+.- +-.++|.+...|...+.++|.
T Consensus 202 ~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~l----l~~vip~l~~eL~se~~~~Rl 277 (1266)
T KOG1525|consen 202 DKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQL----LLAVIPQLEFELLSEQEEVRL 277 (1266)
T ss_pred HHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHH----HHHHHHHHHHHHhcchHHHHH
Confidence 5555555555543223345444443333222211112222223333333333322 345555555566667888999
Q ss_pred HHHHHHHHHHHhcCCCCCCC--ChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-------------------
Q 005891 256 VARETNEELRAIKADPADGF--DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV------------------- 314 (671)
Q Consensus 256 ~A~~~n~~L~~~i~~~~~~~--dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i------------------- 314 (671)
.|....+.+...-.. .+ .++++...-..++.+...++|++|++-....+-..|.-.
T Consensus 278 ~a~~lvg~~~~~~~~---~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~r 354 (1266)
T KOG1525|consen 278 KAVKLVGRMFSDKDS---QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVR 354 (1266)
T ss_pred HHHHHHHHHHhcchh---hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhh
Confidence 998877765543221 22 267888888888888888899998876665444433210
Q ss_pred ----------------hhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc------------cchHHHHHHHHHhhcc
Q 005891 315 ----------------LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD------------LQHFRQLVVFLVHNFR 366 (671)
Q Consensus 315 ----------------~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~------------~~~F~~fm~~LL~lf~ 366 (671)
+.+.+.++..+...+-|....||..|+.-|+++-.+ .+-|.-+-..||+.+.
T Consensus 355 ir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y 434 (1266)
T KOG1525|consen 355 VRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYY 434 (1266)
T ss_pred heeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHh
Confidence 112333566666778899999999999888777632 2456667778888886
Q ss_pred ccchhhhhHHHHHHHHHhccCCh
Q 005891 367 VDNSLLEKRGALIIRRLCVLLDA 389 (671)
Q Consensus 367 ~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (671)
.+. ++.| ..|.|-||..|-|
T Consensus 435 ~~~--~~~r-~~vE~il~~~L~P 454 (1266)
T KOG1525|consen 435 END--LDDR-LLVERILAEYLVP 454 (1266)
T ss_pred hcc--ccHH-HHHHHHHHHhhCC
Confidence 554 5777 7788888887744
No 108
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.33 Score=54.33 Aligned_cols=265 Identities=17% Similarity=0.115 Sum_probs=156.7
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC-CchHHHHHH-HHHHHHHHHhhcc
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D-~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
-+..++-....-..||+..+|.-||-.+.|.+..+......+-..+++++...+-| .+.+|.--| ..|.+.+.-+...
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 45566667777889999999999999999998776677777888999998866644 455665544 4555554433321
Q ss_pred cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc-hHHHH---HHHHHhcCCCChHHHHHHHHHHHHH
Q 005891 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFL---DGLFNMLSDSSHEIRQQADSALWEF 182 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~-Lp~fL---~gLf~lL~D~~~eVR~~a~~~L~~l 182 (671)
.=.+.+-.+.-.++..+.+.++++|..+....+.+.+..+..--.+ ..... ..+.--++|+++.|-.++...+.-.
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhc
Confidence 1011122233345667778999999999999998888776542222 22232 2334468999999988764422211
Q ss_pred HHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHH--HHHHHHHHhhcCcCcccchHhHHHHHhh----hhcCCcHhHHHH
Q 005891 183 LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTA--ITWINEFVKLGGDQLVPYYADILGAILP----CISDKEEKIRVV 256 (671)
Q Consensus 183 l~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~a--l~WI~~~~~l~~~~l~pflp~LLp~LL~----~Lsd~~~eIR~~ 256 (671)
-...+. .....+.+..+ +.+- .+..+ -.|.. .+-++.|.++-.++. .++.+-+.+|..
T Consensus 415 ~p~l~r---ke~~~~~q~~l----d~~~-~~~q~Fyn~~c~--------~L~~i~~d~l~~~~t~~~~~f~sswe~vr~a 478 (533)
T KOG2032|consen 415 YPNLVR---KELYHLFQESL----DTDM-ARFQAFYNQWCI--------QLNHIHPDILMLLLTEDQHIFSSSWEQVREA 478 (533)
T ss_pred CchhHH---HHHHHHHhhhh----HHhH-HHHHHHHHHHHH--------HHhhhCHHHHHHHHHhchhheecchHHHHHH
Confidence 111100 00111111111 1111 12222 12432 233455555554444 334556889988
Q ss_pred HHHHHHHHHHhcCCC-CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 005891 257 ARETNEELRAIKADP-ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (671)
Q Consensus 257 A~~~n~~L~~~i~~~-~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~ 309 (671)
|..-.+.+.....+. -...|...+...+.....++-.+++-+|...+..+..+
T Consensus 479 avl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 479 AVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhhc
Confidence 876555443332210 11234567777888888888888998888888877654
No 109
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.52 E-value=0.54 Score=50.61 Aligned_cols=219 Identities=20% Similarity=0.160 Sum_probs=137.7
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhhcCCchHHHH-HHHHHHHHHHHhhc-c
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSADSDANVQS-AAHLLDRLVKDIVT-E 106 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv--~~~~il~~f~eIf~~L~kL~~D~d~~Vr~-gA~~LdrllKdIv~-e 106 (671)
+.-+.-.+..+.|+....|..|.+.+.++... ....+..+...+++.+.+.+.-+...-+. |+.++.-++-.+-. +
T Consensus 42 e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 34456677888999999999999998887532 23355567789999999988655442222 33444444333221 2
Q ss_pred cchhhhhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhHHhc--hHHHHHHHHHhc---CCC---------ChH
Q 005891 107 SDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLGF--LPDFLDGLFNML---SDS---------SHE 170 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~~~--np~vR~~alswL~~L~~ip~~~li~~--Lp~fL~gLf~lL---~D~---------~~e 170 (671)
...--.+.+.|.|...+.+. .+.+|..++.++..+.-+.+.+.-.. .=+.++.+|... +|. ++.
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 22334678899999988873 56889888877776655444332222 224455554322 222 356
Q ss_pred HHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc---Cc-ccchHhHHHHHhhh
Q 005891 171 IRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD---QL-VPYYADILGAILPC 245 (671)
Q Consensus 171 VR~~a~~~L~~ll~~I~~~~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~---~l-~pflp~LLp~LL~~ 245 (671)
|..+|.++-.-++..++... ...++..+|.+...+.+++-.+|..|=+.|.-+.+.... ++ .+..+.++..+-..
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~L 281 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLREL 281 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHH
Confidence 88888888877776554210 112567889999999999999999998888777776543 32 33344444444333
Q ss_pred hcCC
Q 005891 246 ISDK 249 (671)
Q Consensus 246 Lsd~ 249 (671)
..++
T Consensus 282 a~dS 285 (309)
T PF05004_consen 282 ATDS 285 (309)
T ss_pred HHhc
Confidence 3343
No 110
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.47 E-value=0.37 Score=51.83 Aligned_cols=212 Identities=16% Similarity=0.117 Sum_probs=133.4
Q ss_pred HHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc-ccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CchhHH
Q 005891 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVT-ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV--PDIDML 150 (671)
Q Consensus 75 f~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~-e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~i--p~~~li 150 (671)
+......+.|.....|.+| +.+-+++..-+. +--......+++.+...++-..+.-+..++..+..+.-. ++.+--
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3344445567778888888 444444332111 100112456777778888777777777888888888665 346667
Q ss_pred hchHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhhcCCCCChH---HHHH--HHHHhcCC----------CCHHHH
Q 005891 151 GFLPDFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSPSVDYG---RMAE--ILVQRAAS----------PDEFTR 213 (671)
Q Consensus 151 ~~Lp~fL~gLf~lL~D~~--~eVR~~a~~~L~~ll~~I~~~~~~d~~---~iI~--iLl~~~~s----------~d~~ir 213 (671)
..+..+.+.|.+.+.|.. ..+|.+|+.||+-..-..+.. .-+.. +.++ +....... +++.+.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d-~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD-EEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 788888888889998875 467888888888776433321 12244 3444 22222221 124677
Q ss_pred HHHHHHHHHHHhhcCc-CcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCC---ChHhHHHHHHHh
Q 005891 214 LTAITWINEFVKLGGD-QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF---DVGPILSIATRQ 287 (671)
Q Consensus 214 l~al~WI~~~~~l~~~-~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~---dl~~il~~L~~~ 287 (671)
-.|+.-+.-++...+. .+..++...+|.+...|..++.+||-+|.++..-+.+...+..+++ +.+.++..+.+.
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~L 281 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLREL 281 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHH
Confidence 7788844455555443 4556678889999999999999999999999988887766433322 334554444443
No 111
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.43 E-value=0.13 Score=55.13 Aligned_cols=183 Identities=17% Similarity=0.134 Sum_probs=127.9
Q ss_pred hHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCc-hhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC
Q 005891 115 FIPLLRERMNVL-NPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (671)
Q Consensus 115 fIP~L~e~i~~~-np~vR~~alswL~~L~~ip~-~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~ 192 (671)
+--.|.+|+.-. -.-|=+-+++.-..+-+..| ..+...++-+++|||-+++-..-.||-.- ++.+++
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~l-------L~i~e~---- 123 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQL-------LDIYEK---- 123 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHH-------HHHHHH----
Confidence 334555666542 34778888888887666555 55889999999999999988887777643 332221
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCC
Q 005891 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (671)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~ 272 (671)
.++.+++ .+.|.++.++.+++|.+.|+..|.-+.+.+..+.+...+++
T Consensus 124 -----------------------------~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~-- 171 (307)
T PF04118_consen 124 -----------------------------YYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD-- 171 (307)
T ss_pred -----------------------------HhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh--
Confidence 1233444 78889999999999999999989888888888888877765
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-----------hhH-hhhhhHHHHHHHHhcCCCCHHHHHHH
Q 005891 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-----------TEV-LHFLNDIFDTLLKALSDPSDEVVLLV 340 (671)
Q Consensus 273 ~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p-----------~~i-~~~l~~l~p~LL~~LsD~s~eV~~~~ 340 (671)
+.+...+-..+- .+...|..|+.|+..-..+.. ..+ .+--.-++.++..+|.|++--|++..
T Consensus 172 -----~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~ 245 (307)
T PF04118_consen 172 -----KYFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGF 245 (307)
T ss_pred -----hHHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHH
Confidence 133333333222 345689999999986655543 111 22233477889999999988888888
Q ss_pred HHHHHH
Q 005891 341 LEVHAC 346 (671)
Q Consensus 341 l~lLa~ 346 (671)
+.+|-.
T Consensus 246 LDlLl~ 251 (307)
T PF04118_consen 246 LDLLLS 251 (307)
T ss_pred HHHHHH
Confidence 887644
No 112
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=3.4 Score=49.94 Aligned_cols=355 Identities=15% Similarity=0.140 Sum_probs=197.6
Q ss_pred HHHHHHH-HH---HHHhhhhhHHhHhhhHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhcc---hhhhhHHHHHHHHHHh
Q 005891 10 EIIVEQF-LL---YADLFFYSETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRG---DFIIFFNQIFDALCKL 81 (671)
Q Consensus 10 ~~~~~~~-~~---~~~~~~~~~~yl~~Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~~~---~il~~f~eIf~~L~kL 81 (671)
+|+..++ |. |+..-+.-...+..+...+.+||. |.+--||-.|+-||.-.+..... .+.++.+++.+.|.++
T Consensus 476 g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L 555 (1010)
T KOG1991|consen 476 GYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKL 555 (1010)
T ss_pred hHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHH
Confidence 5565554 53 443334446778889999999999 99999999999999998765442 3678899999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHhhc----ccchhhh---hhhHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCC---
Q 005891 82 SADSDANVQSAAHLLDRLVKDIVT----ESDQFSI---EEFIPLLRERMNV------LNPYVRQFLVGWITVLDSVP--- 145 (671)
Q Consensus 82 ~~D~d~~Vr~gA~~LdrllKdIv~----e~~~f~L---~~fIP~L~e~i~~------~np~vR~~alswL~~L~~ip--- 145 (671)
+.+.|.+.- ...+.++|. |...|+. ..+...+...+.+ .+.+--..|++.++.+.++.
T Consensus 556 ~ne~End~L------t~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~ 629 (1010)
T KOG1991|consen 556 SNEVENDDL------TNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSL 629 (1010)
T ss_pred HHhcchhHH------HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 998887653 333444443 2222322 2222333333332 12233344555555544321
Q ss_pred -c-hhHHhc-hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005891 146 -D-IDMLGF-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINE 222 (671)
Q Consensus 146 -~-~~li~~-Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~ 222 (671)
. .+++.+ =|.+++..-.++.....|+-..+.+......-..+ ..+..+=++.+.+.+..++..-..=-..+-|+.+
T Consensus 630 e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~-~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N 708 (1010)
T KOG1991|consen 630 ENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSK-EISPIMWGLLELILEVFQDDGIDYFTDMMPALHN 708 (1010)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhc-ccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 1 123322 23334444455555555666665554444432221 1224566778888888877654444556778888
Q ss_pred HHhhcCcCccc---chHhHHHHHhhhhcCC---cHhHHHHHHHHHHHHHHhcCCCCCCCC--hHhHHHHHHHhcCC--Cc
Q 005891 223 FVKLGGDQLVP---YYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFD--VGPILSIATRQLSS--EW 292 (671)
Q Consensus 223 ~~~l~~~~l~p---flp~LLp~LL~~Lsd~---~~eIR~~A~~~n~~L~~~i~~~~~~~d--l~~il~~L~~~L~~--~~ 292 (671)
++..+...+.. |+.-++..+-++|... +.+++ .|.+..+.++-.++. .+| +...+......+.. ++
T Consensus 709 ~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~-~a~kLle~iiL~~kg---~~dq~iplf~~~a~~~l~~~~e~ 784 (1010)
T KOG1991|consen 709 YVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCE-SACKLLEVIILNCKG---LLDQYIPLFLELALSRLTREVET 784 (1010)
T ss_pred heeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHHHHHHhcC---cHhhHhHHHHHHHHHHHhccccc
Confidence 88887665532 5666777777777753 34444 455555555555543 222 45556655555554 55
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhh------HHHHHHHHhcCCC--CHHHHHHHHHHHHHHhh------ccchHHHHH
Q 005891 293 EATRIEALHWISTLLNRHRTEVLHFLN------DIFDTLLKALSDP--SDEVVLLVLEVHACIAK------DLQHFRQLV 358 (671)
Q Consensus 293 ~~tRiaaL~WL~~L~~~~p~~i~~~l~------~l~p~LL~~LsD~--s~eV~~~~l~lLa~Is~------~~~~F~~fm 358 (671)
...|..|++-.+.-.-.-|...+..++ ..|+....-..-. ..+.....+-+++-|+- .......++
T Consensus 785 s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~ 864 (1010)
T KOG1991|consen 785 SELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLG 864 (1010)
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 667888887666555555544333222 2333332222111 22223333344444442 123344566
Q ss_pred HHHHhhccccchhhhhH
Q 005891 359 VFLVHNFRVDNSLLEKR 375 (671)
Q Consensus 359 ~~LL~lf~~d~~lLe~R 375 (671)
..++.+|..=++-+.+|
T Consensus 865 ~~lv~L~~~Lp~ala~r 881 (1010)
T KOG1991|consen 865 PALVELLLSLPEALAER 881 (1010)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666665555555555
No 113
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=1.9 Score=50.88 Aligned_cols=272 Identities=15% Similarity=0.160 Sum_probs=150.9
Q ss_pred HHHHHHHHHhhcCC-chHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhc--------CCCHHHHHHHHHHHHHhh
Q 005891 72 NQIFDALCKLSADS-DANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN--------VLNPYVRQFLVGWITVLD 142 (671)
Q Consensus 72 ~eIf~~L~kL~~D~-d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~--------~~np~vR~~alswL~~L~ 142 (671)
+-+..++++++.|. |.-||-+|. +.+|-.|.+ -.|+-+.|.|.+-.++. ...-++|..+++-++.+.
T Consensus 525 ~l~Y~a~lnLL~d~~D~vV~Ltt~---~tlkl~vDD-~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI 600 (978)
T KOG1993|consen 525 PLLYCAFLNLLQDQNDLVVRLTTA---RTLKLVVDD-WNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI 600 (978)
T ss_pred HHHHHHHHHhcCccccceeehHHH---HHHHHhhhh-ccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 46677888999998 778887662 234433432 25777778887744432 355688999999998877
Q ss_pred cCCchhHHhchHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCH--HHH-HHH
Q 005891 143 SVPDIDMLGFLPDFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE--FTR-LTA 216 (671)
Q Consensus 143 ~ip~~~li~~Lp~fL~gLf~lL~D---~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~--~ir-l~a 216 (671)
.-.+..+.+|.-.++.-+- .+++ ..+=.|-+....|..|+..+|..+..-++-+.|++--++.-..+ .+- .-+
T Consensus 601 ~r~~e~I~P~~~~ivq~lp-~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 601 ERVSEHIAPYASTIVQYLP-LLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDG 679 (978)
T ss_pred HHHHHhhhHHHHHHHHHHH-HHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhH
Confidence 6555444454444433222 3333 34557888888999999999875544466666666655543322 222 224
Q ss_pred HH-HHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCCh-HhHHHHHHHhcCCCcHH
Q 005891 217 IT-WINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSSEWEA 294 (671)
Q Consensus 217 l~-WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il~~L~~~L~~~~~~ 294 (671)
++ |...+... ..+-|=+=.+.|-+++.++-+.+..|.+-.-.+...+ ...+..--++ ..+.+.+...+.+-..+
T Consensus 680 meLW~~~L~n~--~~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYil--Ld~~~fl~~y~~~i~k~~~~~l~dvr~e 755 (978)
T KOG1993|consen 680 MELWLTTLMNS--QKLTPELLLLFPHLLYIIEQSTENLPTVLMIISSYIL--LDNTVFLNDYAFGIFKKLNDLLDDVRNE 755 (978)
T ss_pred HHHHHHHHhcc--cccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55 77544433 2333334455566666655555454443322221110 0000000012 35555666666553333
Q ss_pred HHHHHHHHHHHHHhhChhhHhh--hhhHHHHHHHHh--cCCCCHHHHHHHHHHHHHHh-hccchH
Q 005891 295 TRIEALHWISTLLNRHRTEVLH--FLNDIFDTLLKA--LSDPSDEVVLLVLEVHACIA-KDLQHF 354 (671)
Q Consensus 295 tRiaaL~WL~~L~~~~p~~i~~--~l~~l~p~LL~~--LsD~s~eV~~~~l~lLa~Is-~~~~~F 354 (671)
.-.+.+.-+-.+.+..| +.. +...++|.+..+ .+|+.|-|-..-+.+.+||+ -|.+.|
T Consensus 756 gl~avLkiveili~t~~--il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~ 818 (978)
T KOG1993|consen 756 GLQAVLKIVEILIKTNP--ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLF 818 (978)
T ss_pred HHHHHHHHHHHHHhhhH--HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHH
Confidence 33443333333333332 332 444555555554 47888999999999999999 344444
No 114
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.42 E-value=0.033 Score=59.41 Aligned_cols=229 Identities=17% Similarity=0.143 Sum_probs=144.4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchH--HHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHhhcC
Q 005891 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDGLFNMLSDSSH---EIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 115 fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp--~fL~gLf~lL~D~~~---eVR~~a~~~L~~ll~~I~~~ 189 (671)
-+|++.+.+++.+..||..++-.+.+++.=.. ..-.|.= ..|++++.++..+.. -+|.++ =.|..+++ ++.
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~T-WtLSNlcR--Gkn 233 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSE-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT-WTLSNLCR--GKN 233 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCch-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhH-HHHHHhhC--CCC
Confidence 36888888899999999999999988764332 2223321 125566666654443 356654 55778876 556
Q ss_pred CCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCcHhHHHHHHHHHHHHH
Q 005891 190 PSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEELR 265 (671)
Q Consensus 190 ~~~d---~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (671)
|.+| +...+|+|-+.+.+.|+++-..|+-.|+.+...+.+..-. .=..+.+.++..++++...|..-|.+..+.
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN-- 311 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN-- 311 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC--
Confidence 7676 5677999999999999999888888777665543222100 012233446666666655443333222211
Q ss_pred HhcC-CCCCC--CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhh-HHHHHHHHhcCCCCHHHHHHHH
Q 005891 266 AIKA-DPADG--FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVL 341 (671)
Q Consensus 266 ~~i~-~~~~~--~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~LsD~s~eV~~~~l 341 (671)
++. ++... +--...++.+...|.+..+..|-.|-=-+..+.-+..+.+....+ +++|.|++.|+-.+-.+++.+|
T Consensus 312 -IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 312 -IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred -eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 111 10000 001245566666687777777665554455666666666554444 5899999999999889999999
Q ss_pred HHHHHHhhc
Q 005891 342 EVHACIAKD 350 (671)
Q Consensus 342 ~lLa~Is~~ 350 (671)
|.++...++
T Consensus 391 WAisNatsg 399 (526)
T COG5064 391 WAISNATSG 399 (526)
T ss_pred HHHHhhhcc
Confidence 999988753
No 115
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.22 Score=58.92 Aligned_cols=228 Identities=15% Similarity=0.195 Sum_probs=159.5
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhh
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L 112 (671)
..-.+..+.|+..-+|.||..-+..+++.-+..-+..-..+++.....+.|.|+=|=-.| ..+..++. . --
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-v-------y~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-V-------YP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-h-------cc
Confidence 456678889999999999988877776532222233334889999999999998654444 44444444 1 23
Q ss_pred hhhHHHHHHhhcC---CC-HHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 113 EEFIPLLRERMNV---LN-PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 113 ~~fIP~L~e~i~~---~n-p~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
+.++|.+.|.-.. .+ ++.|..+=+.|..+..--|.=...|...++........||+.+-|-.++..++.+++....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 6678888884432 11 4666666677877777777667788888888777888999888999999999999987653
Q ss_pred CCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhcCcCcccch----HhHHHHHhhhhc-CCcHhHHHHHHHHHH
Q 005891 189 SPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYY----ADILGAILPCIS-DKEEKIRVVARETNE 262 (671)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~-s~d~~irl~al~WI~~~~~l~~~~l~pfl----p~LLp~LL~~Ls-d~~~eIR~~A~~~n~ 262 (671)
..+-++.++..-++.-.+ +....+|+.|+.-|..+..-.|.+++|++ -.....+++-+. ++++.+|-.|+.+..
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 222245555555555443 44567999999999999998899998854 344445555555 455668888888877
Q ss_pred HHHHhcC
Q 005891 263 ELRAIKA 269 (671)
Q Consensus 263 ~L~~~i~ 269 (671)
.+.....
T Consensus 961 ei~a~l~ 967 (982)
T KOG4653|consen 961 EIQAALE 967 (982)
T ss_pred HHHHHHH
Confidence 7665543
No 116
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.36 E-value=0.56 Score=56.08 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhhhhHHhHhhhHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchH
Q 005891 10 EIIVEQFLLYADLFFYSETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDAN 88 (671)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~yl~~Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~ 88 (671)
++|+++.-.+++.|.. .+-..++..+++.+. |.-..||..||.-+..+-+.+..+ ..|++.+-.|-.+..|.-..
T Consensus 556 ~ii~d~~~~~~~~ge~--~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~--~~fe~~L~iLq~lCrd~~vs 631 (1529)
T KOG0413|consen 556 QIIQDFKLKLMNKGET--RVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEA--SKFEVVLSILQMLCRDRMVS 631 (1529)
T ss_pred hhhhhcchhhhhcccc--HHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchh--hcchhHHHHHHHHhcCcchH
Confidence 5677776677777755 445567788888888 888889999999887776654433 34777777788888888877
Q ss_pred HHHHH-HHHHH
Q 005891 89 VQSAA-HLLDR 98 (671)
Q Consensus 89 Vr~gA-~~Ldr 98 (671)
||.-+ ..|..
T Consensus 632 vrk~~~~Slte 642 (1529)
T KOG0413|consen 632 VRKTGADSLTE 642 (1529)
T ss_pred HHHHHHHHHHH
Confidence 76655 54444
No 117
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.32 E-value=0.043 Score=66.65 Aligned_cols=168 Identities=22% Similarity=0.239 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc-CCchH--------HHHHH-HHHHHHHHHhhcccchhhhhhhHHH
Q 005891 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDAN--------VQSAA-HLLDRLVKDIVTESDQFSIEEFIPL 118 (671)
Q Consensus 49 R~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~-D~d~~--------Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~ 118 (671)
|..|--.|.-+++..++......+.+++.|.+-+. +.+.+ |-+.+ -..+..++ ++-...|.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~---------~~~~~l~~ 820 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLH---------PLGSLLPR 820 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhh---------hhhhhhhH
Confidence 56666677778888888776555666666664432 22222 11111 11111111 24466788
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCchh-HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 005891 119 LRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRM 197 (671)
Q Consensus 119 L~e~i~~~np~vR~~alswL~~L~~ip~~~-li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~i 197 (671)
+..+.++..+.+|..+..+|..+.+....+ +...+..+++ ++.|.+.-+|++...++-..+
T Consensus 821 l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~----ll~~~~~~~~r~~a~e~~~~l-------------- 882 (1549)
T KOG0392|consen 821 LFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLP----LLGDLDKFVRRQGADELIELL-------------- 882 (1549)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccchhhHhhhhhHHHHHHHH--------------
Confidence 888888999999999999999887766544 4445555555 888888777777644333333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcC
Q 005891 198 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (671)
Q Consensus 198 I~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (671)
+......+.||.|-+++.++++|+|....+|.+|.++...+...+.
T Consensus 883 --------------------------~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 883 --------------------------DAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred --------------------------HHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 3344557899999999999999999999999999999888776654
No 118
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.21 Score=58.99 Aligned_cols=219 Identities=16% Similarity=0.112 Sum_probs=151.0
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 005891 122 RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEIL 201 (671)
Q Consensus 122 ~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iL 201 (671)
.++|+-+.+|-+++.-+..+..--...-....-.+++....++.|.++=|--.|.+.+..+++.-+ ++|+|-+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-------e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-------EDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-------hhhHHHH
Confidence 345666777877777777665533333333444566666779999999999999898888887432 5677777
Q ss_pred HHhcCC----CCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCCh
Q 005891 202 VQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 277 (671)
Q Consensus 202 l~~~~s----~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl 277 (671)
.+.-.+ .....|+.+=+.|..+++..|+-+..|...++...++..-+++.+-|..+..+.+.+++.......+ .+
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HH
Confidence 664322 2234455555777788888888888899999999999999888888988888888888775421112 34
Q ss_pred HhHHH-HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhh----HHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q 005891 278 GPILS-IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN----DIFDTLLKALSDP-SDEVVLLVLEVHACIA 348 (671)
Q Consensus 278 ~~il~-~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~----~l~p~LL~~LsD~-s~eV~~~~l~lLa~Is 348 (671)
.+++. ++...-.+.....|-||.+-+..+..+.+.+++|.+. +....++.-..+. ++-++..++..+.+|-
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 44444 3333345778999999999999999999999998553 3334444444444 4445667777776665
No 119
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.23 E-value=1.4 Score=52.42 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=71.9
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHH--HHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIA--KVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~--Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
..+++++..++...+..+...+...|.+++ +..+..+. -..+++.|.+++...+..+.+.| .+|-++.-|--..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R- 365 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR- 365 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH-
Confidence 468999999999888888888888777764 22233333 23788999999987777777777 6665543321110
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~i 144 (671)
....-..++|.|..++.+ +..|..++..++++...
T Consensus 366 ~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~d 400 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMD 400 (708)
T ss_pred HHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccC
Confidence 112224467788877764 45667788888877553
No 120
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=3.6 Score=48.92 Aligned_cols=312 Identities=17% Similarity=0.187 Sum_probs=190.3
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-H--------------
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-H-------------- 94 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~-------------- 94 (671)
-+.|..-|+..+-.....+...-.|++|-|+| .+.-..|+.++|.|++-++..|-++-+|. .
T Consensus 86 ~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~---~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efr 162 (960)
T KOG1992|consen 86 REQIKSLIVTLMLSSPFNIQKQLSEALSLIGK---RDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFR 162 (960)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhc---cccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccc
Confidence 34566677777777778899999999999974 33445699999999988888887776665 1
Q ss_pred ----------HHHHHHH---Hhhcc---------cc------------------------------hhhhhhhHHHHHHh
Q 005891 95 ----------LLDRLVK---DIVTE---------SD------------------------------QFSIEEFIPLLRER 122 (671)
Q Consensus 95 ----------~LdrllK---dIv~e---------~~------------------------------~f~L~~fIP~L~e~ 122 (671)
.||+..+ ++... .+ +..++.+++.+...
T Consensus 163 SdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~ 242 (960)
T KOG1992|consen 163 SDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKL 242 (960)
T ss_pred cHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHH
Confidence 1222111 11110 00 34567778887777
Q ss_pred hcCCC-------------HHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHH--HHHHHHHHHHHHHhh
Q 005891 123 MNVLN-------------PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR--QQADSALWEFLQEIK 187 (671)
Q Consensus 123 i~~~n-------------p~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR--~~a~~~L~~ll~~I~ 187 (671)
+...+ -++|..+|+.++....-.+.++.+++|+|......++.+..++.| ..+++++.-+....+
T Consensus 243 l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~ 322 (960)
T KOG1992|consen 243 LTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSR 322 (960)
T ss_pred HhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHh
Confidence 76333 267889999999999999999999999999999999998888777 334444544443333
Q ss_pred cCCCC---ChHHH---------------------------HHHHHHhcCCCCHHH-HHHHHHHHHHHHhhcCcCcccchH
Q 005891 188 NSPSV---DYGRM---------------------------AEILVQRAASPDEFT-RLTAITWINEFVKLGGDQLVPYYA 236 (671)
Q Consensus 188 ~~~~~---d~~~i---------------------------I~iLl~~~~s~d~~i-rl~al~WI~~~~~l~~~~l~pflp 236 (671)
+.-+. .-+++ ++++-.-+.-.|-.. |+.|+..++.+++.....+.+-+.
T Consensus 323 r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~ 402 (960)
T KOG1992|consen 323 RPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS 402 (960)
T ss_pred hhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 21111 11222 233333333333233 566888888888877666655555
Q ss_pred hHHHHHhhhh-cCCcHhHH--HH--------HHHHHHHHHHhcCCCCCCCChHh-HHHHHHHhcCC----CcHHHHHHHH
Q 005891 237 DILGAILPCI-SDKEEKIR--VV--------ARETNEELRAIKADPADGFDVGP-ILSIATRQLSS----EWEATRIEAL 300 (671)
Q Consensus 237 ~LLp~LL~~L-sd~~~eIR--~~--------A~~~n~~L~~~i~~~~~~~dl~~-il~~L~~~L~~----~~~~tRiaaL 300 (671)
..+..++... +++..+-+ +. |.+....-. -+....+-+|+.+ ..+.+.-.|.+ ++...|.+++
T Consensus 403 ~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~-Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI 481 (960)
T KOG1992|consen 403 SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKH-GVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI 481 (960)
T ss_pred HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhc-ceeeccccccHHHHHHHHhhHHhccCccccccchhhccc
Confidence 5555555422 23322211 11 111111000 0111112234322 22334444443 4556799999
Q ss_pred HHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 301 HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 301 ~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
+.+..+....+.. |+=..+|.++..|.-++.-|-+-|...+.++-
T Consensus 482 Ky~~~FR~ql~~~---~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 482 KYIYTFRNQLGKE---HLMALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred ceeeeecccCChH---HHHHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 9998888877664 44578999999999888888777777776665
No 121
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.19 E-value=0.0081 Score=41.79 Aligned_cols=30 Identities=33% Similarity=0.445 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 156 fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
+++.++++++|++++||.+|..+|+.+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 466777799999999999999999999863
No 122
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.12 E-value=0.52 Score=52.55 Aligned_cols=188 Identities=19% Similarity=0.188 Sum_probs=132.8
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhc
Q 005891 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV---DYGRMAEILVQRAAS-PDEFTRLTAITWINEFVKLG 227 (671)
Q Consensus 152 ~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~---d~~~iI~iLl~~~~s-~d~~irl~al~WI~~~~~l~ 227 (671)
..+-+.+-|-++=++...+=|+.|...|-.++.+= ...+ ++..|+..+++-+.+ .++.+|..|+.-|.+++.-.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~--sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEG--SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc
Confidence 33444444444444445666666655443333211 1111 478888889998888 67778999999999999999
Q ss_pred CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005891 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (671)
Q Consensus 228 ~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~ 307 (671)
+..+..+..-.+--+|.+-.|+++++-..|.++.-..+.... .+..|+.+ ...+....++.-.++++-+..+.
T Consensus 362 ~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~------P~~~I~~i-~~~Ilt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 362 PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL------PLQCIVNI-SPLILTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC------chhHHHHH-hhHHhcCcchHHHHHHHHHHHHH
Confidence 999988888888899999999998877777665444333321 23344333 33333367888899999999999
Q ss_pred hhChh-hHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 308 NRHRT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 308 ~~~p~-~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
+..+. ++.+.++++.|.+++.....+..||+.+.-+|=.|.
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 88754 577899999999999999999999998887664444
No 123
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.10 E-value=2.9 Score=48.04 Aligned_cols=165 Identities=19% Similarity=0.178 Sum_probs=105.3
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
....++.-++++...+|..|||-.|..+.-+..+++.---.-+|-+...|.+-+-|.++.||--| ..|.++-++-..+
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne- 166 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE- 166 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-
Confidence 44556667799999999999999999999999888762223478999999988999999999888 5666654322221
Q ss_pred chhhhhhhHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 108 DQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i-~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
-+.....|...+ +|++..||..++.-|.+=.+. .|-+++ -..|.+...|+.+-+ ..+..|
T Consensus 167 ----en~~~n~l~~~vqnDPS~EVRr~allni~vdnsT--------~p~IlE----RarDv~~anRr~vY~---r~Lp~i 227 (885)
T COG5218 167 ----ENRIVNLLKDIVQNDPSDEVRRLALLNISVDNST--------YPCILE----RARDVSGANRRMVYE---RCLPRI 227 (885)
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCc--------chhHHH----HhhhhhHHHHHHHHH---HHhhhh
Confidence 122233344444 578899999998777653332 344455 566777777776543 555555
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHH
Q 005891 187 KNSPSVDYGRMAEILVQRAASPDEFTR 213 (671)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~ir 213 (671)
|.....++++=|-+|-..+.+.+..++
T Consensus 228 Gd~~~lsi~kri~l~ewgl~dRe~sv~ 254 (885)
T COG5218 228 GDLKSLSIDKRILLMEWGLLDREFSVK 254 (885)
T ss_pred cchhhccccceehhhhhcchhhhhhHH
Confidence 543223333322233333444443333
No 124
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=1.5 Score=52.20 Aligned_cols=211 Identities=16% Similarity=0.186 Sum_probs=137.0
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCccc-c-hHhHHHHHhhhhcCC-cHhHHHHHHHHHHHHHHhcCCCCCC
Q 005891 199 EILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVP-Y-YADILGAILPCISDK-EEKIRVVARETNEELRAIKADPADG 274 (671)
Q Consensus 199 ~iLl~~~~s~-d~~irl~al~WI~~~~~l~~~~l~p-f-lp~LLp~LL~~Lsd~-~~eIR~~A~~~n~~L~~~i~~~~~~ 274 (671)
..|++.++.. ||-.+++|+.=+.+++.++.++-+. | ...++|++...+.+. +++|...|++|...++++.......
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3444444444 8889999988888888777655332 2 567899999999865 5999999999999999998753222
Q ss_pred CChHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--cc
Q 005891 275 FDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DL 351 (671)
Q Consensus 275 ~dl~~il~~L~~~L~~-~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~--~~ 351 (671)
.--...++++.+.|.. +-...-+.+|+.|-.|.+..|..++. -+-+-..|.-|.-=+-.+-..|+-+-+.+|. ..
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2123678888887763 33557888999999999998887763 1222222333333344566678888888884 23
Q ss_pred chHHHHHHHH---Hhhc-cccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChhHHHHHHHHHHH
Q 005891 352 QHFRQLVVFL---VHNF-RVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNL 418 (671)
Q Consensus 352 ~~F~~fm~~L---L~lf-~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~ 418 (671)
+.|+.||+.| ..+| ..|++.+|.+---.-|-.|.......-+..++. ...+...+|.|+.
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-------~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-------HDLITNIQQLLSV 391 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-------hhHHHHHHHHHhc
Confidence 4455555543 4455 466888888754455656666655444444442 4455566666653
No 125
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=4.1 Score=55.25 Aligned_cols=436 Identities=16% Similarity=0.153 Sum_probs=234.1
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHh-cchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV-RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~-~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
+-..++.+.+..+..|+.|.-|+..|.++.-+.... ...++.+--+++.++.--+.|...++.+|+ +.-...++++..
T Consensus 1029 pi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~ 1108 (3550)
T KOG0889|consen 1029 PMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILR 1108 (3550)
T ss_pred chHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHH
Confidence 345678888899999999999999988877654432 234455556888999888899999999877 333333343332
Q ss_pred c----------cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCC--ChHHHH
Q 005891 106 E----------SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS--SHEIRQ 173 (671)
Q Consensus 106 e----------~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~--~~eVR~ 173 (671)
- ........+-|...+. .++|+.||.++...+.++....+.+....+..+ ++.+.=| ..+.|.
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~lv~eL-~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~----K~~ll~p~f~k~lr~ 1183 (3550)
T KOG0889|consen 1109 VIFIDELAEEERAKSAMNVFSPLVLEL-FNPNSDVREFSQKLLRLISELSGKSVVKLLEPF----KDVLLSPIFKKPLRA 1183 (3550)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHH----HHHHhcccccccccc
Confidence 1 1123344555555554 458889999999999999887765544333333 3233111 122332
Q ss_pred H----HHHHHHHHHHHhhcCCC-CChHHH-------HHHHHHhcC-----------CCCH----HHHHHHHHHHHHHHhh
Q 005891 174 Q----ADSALWEFLQEIKNSPS-VDYGRM-------AEILVQRAA-----------SPDE----FTRLTAITWINEFVKL 226 (671)
Q Consensus 174 ~----a~~~L~~ll~~I~~~~~-~d~~~i-------I~iLl~~~~-----------s~d~----~irl~al~WI~~~~~l 226 (671)
. ....++.+.-.+-..|. .|+... ...+..... .++. ..|..|+..+...+..
T Consensus 1184 ~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~ 1263 (3550)
T KOG0889|consen 1184 LPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKL 1263 (3550)
T ss_pred CCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhc
Confidence 1 22222222222222221 222111 111111111 1111 2356666666555554
Q ss_pred cC---cCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHh-cCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005891 227 GG---DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI-KADPADGFDVGPILSIATRQLSSEWEATRIEALHW 302 (671)
Q Consensus 227 ~~---~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~-i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~W 302 (671)
.+ ....++.++++.++++.|--+.+|+-++|..+....... ..-+.+ -++..+..+...+.|- ...=+..+.|
T Consensus 1264 ~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke--~lq~~lrplL~~l~d~-~~lsv~~l~~ 1340 (3550)
T KOG0889|consen 1264 SDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKE--LLQSHLRPLLMNLSDH-NNLSVPGLEG 1340 (3550)
T ss_pred ccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHH--HHHhhHHHHHHhhhHh-hhhhHHHHHH
Confidence 33 245788999999999999999999998887765443322 110000 1244454555555442 2245677788
Q ss_pred HHHHHhhChhhHh-hhhhHHHHHHHHhcCCCCHH-------------HHHHHHHHHHHHhhccchHHHHHHHHHhhcccc
Q 005891 303 ISTLLNRHRTEVL-HFLNDIFDTLLKALSDPSDE-------------VVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVD 368 (671)
Q Consensus 303 L~~L~~~~p~~i~-~~l~~l~p~LL~~LsD~s~e-------------V~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d 368 (671)
+..+.+..+.-+- ....+++..+-+.++|..-+ ++.....+.-.++. -=.+|+..|+.....-
T Consensus 1341 ls~l~~ll~~~f~~e~~rkll~hl~~~~~~~~~~y~~~~l~~~~~~~i~~~~i~~f~~lp~---~~~~~~~~Ll~~v~~~ 1417 (3550)
T KOG0889|consen 1341 LSRLLRLLINYFKVEIGRKLLQHLKKWLEDEVLDYLSGALKAGPEMKIIVVIINLFHLLPP---AADKFLDELLLCVVLL 1417 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHhhhhccCccchhhhHHHHHHHhccH---HHHHHHHHHHHHHHHH
Confidence 8877776544322 22223333333333222111 11111111111111 0123444444433222
Q ss_pred -chhhhhHH----HHHHHHHhccCChHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchH
Q 005891 369 -NSLLEKRG----ALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGK 443 (671)
Q Consensus 369 -~~lLe~Rg----~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~ 443 (671)
+.+..+.+ .-+++-+ ...+.+.+...++. -.+..|.++++-.+ -.++..++|..+.+ .+
T Consensus 1418 e~~L~~~~~sp~r~pl~kfl-~r~~~~tv~~f~~~----~~~~~~~~~f~~~~-----~~~~~~~l~e~~~~------~~ 1481 (3550)
T KOG0889|consen 1418 EEVLRKEENSPFREPLLKFL-NRFANPTVDYFLAQ----LDEPDLYRMFVYAL-----RIDDLLPLREVLAK------EW 1481 (3550)
T ss_pred HHHHHHhcCChhhhHHHHHH-HHccCchHHHHHHH----cchHHHHHHHHHHH-----cccchhHHHHHHhh------hH
Confidence 22211111 1222222 22334555555555 26777877777665 45788888888876 22
Q ss_pred H-HHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHH
Q 005891 444 D-LFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFL 490 (671)
Q Consensus 444 ~-lF~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~~~~e~~~~~l 490 (671)
. +..-+..+-.++++...+.|+-.|+-..++.+++.+++-..+..+.
T Consensus 1482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~vk~~~e~~~s~~~i 1529 (3550)
T KOG0889|consen 1482 LEFYTLLDPEISSYTVPNMASDIQFQMVPLISTMVKNDDEWLLSSQFI 1529 (3550)
T ss_pred HHHHHhccCccCccccchhhcchhhhhhHHHHHHHhccHHHhhccchH
Confidence 2 2233334556666677888999999999998877776666664443
No 126
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.05 E-value=3.2 Score=48.16 Aligned_cols=313 Identities=14% Similarity=0.067 Sum_probs=169.5
Q ss_pred HHhHhh-hHHHHHhccCCCC-HHHHHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHhhc-CCchHHHHHHHHHHHHH
Q 005891 27 ETILQQ-IVPPVLNSFSDQD-SRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSA-DSDANVQSAAHLLDRLV 100 (671)
Q Consensus 27 ~~yl~~-Ii~pvL~~l~D~d-~rVR~~A~eaL~nI~Kv~~---~~il~~f~eIf~~L~kL~~-D~d~~Vr~gA~~Ldrll 100 (671)
+..+.. ..+.+++.+.++| ..++....+++-+|-.-.+ .....+-..++..+..+.+ ..+..++ ++..+
T Consensus 89 ~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~-----l~~~~ 163 (678)
T KOG1293|consen 89 DSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISR-----LDVSR 163 (678)
T ss_pred HHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhh-----hhhhh
Confidence 344444 5689999999999 9999999999988864321 1223344567777766665 2222222 22221
Q ss_pred HHhhcc---cchhhhhhhHHHHHHhhc-CCCHHHHHHHHHHHH---HhhcCCchhHHhchHHH-----HH--HHHHhcCC
Q 005891 101 KDIVTE---SDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWIT---VLDSVPDIDMLGFLPDF-----LD--GLFNMLSD 166 (671)
Q Consensus 101 KdIv~e---~~~f~L~~fIP~L~e~i~-~~np~vR~~alswL~---~L~~ip~~~li~~Lp~f-----L~--gLf~lL~D 166 (671)
-...+. ......+.-++.-.+..+ .-...+|..++.++. .+..-++..-+..+... .+ .+-+++.|
T Consensus 164 ~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~ 243 (678)
T KOG1293|consen 164 AAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKD 243 (678)
T ss_pred hccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhC
Confidence 111110 000011112222222222 235678888888888 44444443333333333 22 23468899
Q ss_pred CChHHHHHHHHHHHHHHHHhhcC-C---------------------------C---CChHHHHHH----HHHhcCCCCHH
Q 005891 167 SSHEIRQQADSALWEFLQEIKNS-P---------------------------S---VDYGRMAEI----LVQRAASPDEF 211 (671)
Q Consensus 167 ~~~eVR~~a~~~L~~ll~~I~~~-~---------------------------~---~d~~~iI~i----Ll~~~~s~d~~ 211 (671)
++..-|..+..|+...+..=.+. + . .|....+-- +.+..+.+ +
T Consensus 244 ~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~--~ 321 (678)
T KOG1293|consen 244 PDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLP--Q 321 (678)
T ss_pred CCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhH--H
Confidence 99999999999998888644221 0 0 011111110 11111111 1
Q ss_pred HHHHHHHHHHHHHhh----------------------------cCcCcccc-hHhHHHHHhhhhc-CCcHhHHHHHHHHH
Q 005891 212 TRLTAITWINEFVKL----------------------------GGDQLVPY-YADILGAILPCIS-DKEEKIRVVARETN 261 (671)
Q Consensus 212 irl~al~WI~~~~~l----------------------------~~~~l~pf-lp~LLp~LL~~Ls-d~~~eIR~~A~~~n 261 (671)
....+..-+.++... .+.+...+ +....-..+.++. ..+.+.+.+|..+.
T Consensus 322 ~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~ 401 (678)
T KOG1293|consen 322 HEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCL 401 (678)
T ss_pred hhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 111111111111111 11111111 1111112222222 34556777777777
Q ss_pred HHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---hHhhhhhHHHHHHHHhcCCCCHHHHH
Q 005891 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT---EVLHFLNDIFDTLLKALSDPSDEVVL 338 (671)
Q Consensus 262 ~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~---~i~~~l~~l~p~LL~~LsD~s~eV~~ 338 (671)
..+.+.+..-.++++-.+++..+.+-+.++...+..+++..|..+.-.++. ++. -.+.+..+.+.++|+.+.+|.
T Consensus 402 ~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl--~~ngId~l~s~~~~~~~n~r~ 479 (678)
T KOG1293|consen 402 KSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFL--RNNGIDILESMLTDPDFNSRA 479 (678)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHH--HcCcHHHHHHHhcCCCchHHH
Confidence 777666653334455567777777777888888888999888887766543 333 346788999999999999999
Q ss_pred HHHHHHHHHh
Q 005891 339 LVLEVHACIA 348 (671)
Q Consensus 339 ~~l~lLa~Is 348 (671)
+++|+|....
T Consensus 480 ~~~~~Lr~l~ 489 (678)
T KOG1293|consen 480 NSLWVLRHLM 489 (678)
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 127
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.00 E-value=0.094 Score=52.06 Aligned_cols=140 Identities=21% Similarity=0.261 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHh-cchhhhhHHHHHHHH-----------H-HhhcCCchHHHHHH-HHHHHHHHHh---h---cc
Q 005891 47 RVRYYACEALYNIAKVV-RGDFIIFFNQIFDAL-----------C-KLSADSDANVQSAA-HLLDRLVKDI---V---TE 106 (671)
Q Consensus 47 rVR~~A~eaL~nI~Kv~-~~~il~~f~eIf~~L-----------~-kL~~D~d~~Vr~gA-~~LdrllKdI---v---~e 106 (671)
+||..|...+..++|.. +.....||..+||.- + -++.|+++.||.+| ..+..++... . .+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 58999999999999984 456779999999855 2 35689999999999 6666665521 1 11
Q ss_pred cc---------hhhhhhhHHHHHHhh-----cCCCHHHHHHHHHHHHHhhcCCchh-H-HhchHHHHHHHHHhcCCCChH
Q 005891 107 SD---------QFSIEEFIPLLRERM-----NVLNPYVRQFLVGWITVLDSVPDID-M-LGFLPDFLDGLFNMLSDSSHE 170 (671)
Q Consensus 107 ~~---------~f~L~~fIP~L~e~i-----~~~np~vR~~alswL~~L~~ip~~~-l-i~~Lp~fL~gLf~lL~D~~~e 170 (671)
.. ...+...|--+-..+ ...++.+-..++.++..+....+-+ + ..++++++..+...+.+.+++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 122333333333222 2467778888899999887755433 2 368899999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 005891 171 IRQQADSALWEFLQEI 186 (671)
Q Consensus 171 VR~~a~~~L~~ll~~I 186 (671)
||.++-.|++.++..-
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999888643
No 128
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=5.1 Score=46.96 Aligned_cols=393 Identities=17% Similarity=0.163 Sum_probs=211.8
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
++.+..++..|-.-+...|+---.-|...+.||.. +.....+-++|-..|. .+|...-||.-| -.|-++.+..
T Consensus 106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~DI~KlLv--S~~~~~~vkqkaALclL~L~r~s-- 179 (938)
T KOG1077|consen 106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFADDIPKLLV--SGSSMDYVKQKAALCLLRLFRKS-- 179 (938)
T ss_pred hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhhhhHHHHh--CCcchHHHHHHHHHHHHHHHhcC--
Confidence 44566677777777776666655555555555532 2222333334432221 256667787766 4566666521
Q ss_pred ccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhc---------------------
Q 005891 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML--------------------- 164 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL--------------------- 164 (671)
.+.+.....+..+...+.|.+-.|-..+.+.|..+.+-.+.+.-..+|.-+..|....
T Consensus 180 -pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 180 -PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred -ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 1122334445555555565555555555555555555444443333333333332111
Q ss_pred -----------CCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC--HHH-HHHHH-HHHHHHHhhcCc
Q 005891 165 -----------SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--EFT-RLTAI-TWINEFVKLGGD 229 (671)
Q Consensus 165 -----------~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d--~~i-rl~al-~WI~~~~~l~~~ 229 (671)
.-.++.+|....++|+.++....+.| .+++ ... +-+.+ +.|.-...+.++
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~---------------~~k~vq~~na~naVLFeaI~l~~h~D~e 323 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPP---------------KSKKVQHSNAKNAVLFEAISLAIHLDSE 323 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCc---------------cccchHhhhhHHHHHHHHHHHHHHcCCc
Confidence 11233344444444444443222111 1111 122 22222 255545555544
Q ss_pred CcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhH---HHHHHHhcC-CCcHHHHHHHHHHHHH
Q 005891 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPI---LSIATRQLS-SEWEATRIEALHWIST 305 (671)
Q Consensus 230 ~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~i---l~~L~~~L~-~~~~~tRiaaL~WL~~ 305 (671)
.- .+.+.+..+-+.+++.+.+||-.|.+....|... +...+++ .+.+..-|. ..+...|-.|++.|.+
T Consensus 324 ~~--ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss------~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 324 PE--LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS------EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred HH--HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc------cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 32 2788888999999999999999998876666543 1112222 233444444 4567789999999999
Q ss_pred HHhhChhhHhhhhhHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHH
Q 005891 306 LLNRHRTEVLHFLNDIFDTLLKALSDPS--DEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRL 383 (671)
Q Consensus 306 L~~~~p~~i~~~l~~l~p~LL~~LsD~s--~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~L 383 (671)
+.+....+.. .++++.+|.. .|.+ ++++.++.=+-.+++.+-..|.+++-.|+..-.+-.. .-||.++
T Consensus 396 mcD~~Nak~I--V~elLqYL~t--Ad~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs------deVW~Rv 465 (938)
T KOG1077|consen 396 MCDVSNAKQI--VAELLQYLET--ADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS------DEVWYRV 465 (938)
T ss_pred HhchhhHHHH--HHHHHHHHhh--cchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc------HHHHHHh
Confidence 9988765543 4444444433 2322 3444455445566777777888888888876553222 3366666
Q ss_pred hcc-CChHHHHHHHHHhhccc-CChhHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHH
Q 005891 384 CVL-LDAERVYRELSTILEGE-ADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAII 461 (671)
Q Consensus 384 c~~-L~~E~Iy~~la~iL~~~-~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~l 461 (671)
|.. .|.|.+=+.-|+-+-+. ....--+.||..=.-|| -| +=+.+-+ -........|..|++-+--.+.+|-
T Consensus 466 vQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiL---GE---fg~LIa~-~prss~~~qFsllh~K~~~~s~~tr 538 (938)
T KOG1077|consen 466 VQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYIL---GE---FGNLIAD-DPRSSPAVQFSLLHEKLHLCSPVTR 538 (938)
T ss_pred heeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhh---hh---hhhhhcC-CCCCChHHHHHHHHHHhccCChhHH
Confidence 665 46665444333332221 23344557777766665 22 2222322 1233457899999998877777777
Q ss_pred HHHHH
Q 005891 462 SLCLL 466 (671)
Q Consensus 462 slcll 466 (671)
+|.|=
T Consensus 539 ~lLLt 543 (938)
T KOG1077|consen 539 ALLLT 543 (938)
T ss_pred HHHHH
Confidence 66553
No 129
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=7.4 Score=48.08 Aligned_cols=104 Identities=26% Similarity=0.296 Sum_probs=75.1
Q ss_pred CCc-hHHHHHH-HHHHHHHHHhhccc----chhhhh-hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHH
Q 005891 84 DSD-ANVQSAA-HLLDRLVKDIVTES----DQFSIE-EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDF 156 (671)
Q Consensus 84 D~d-~~Vr~gA-~~LdrllKdIv~e~----~~f~L~-~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~f 156 (671)
|.+ -..|++- +.+..++.+...+. ...++. .++..|.+++.|.+++||.-+++....+..-... -.....++
T Consensus 322 d~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-p~~~~~eV 400 (1251)
T KOG0414|consen 322 DSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-PLGSRTEV 400 (1251)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC-CccHHHHH
Confidence 444 4677766 66666555444421 123344 4999999999999999999998766655432221 13467788
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 157 L~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
+.+.+.-+.|-+.-||+.|.+.+..|+...+-
T Consensus 401 ~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 401 LELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999986653
No 130
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.65 E-value=0.37 Score=58.71 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhc
Q 005891 194 YGRMAEILVQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 194 ~~~iI~iLl~~~~s----~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i 268 (671)
++.+.|++++-|.. +++++|.+|-..+..|+-+.. .|...=+|.++..|. .+.|-||.=+.-+.+.|.=..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 56788999998854 478999999888888887654 256677788888888 677888854433333221111
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
. + -+++.-+.+-.++.+++..+|.+|+.-+.+|.-+-.-++. +-++.+-.|+.|+.++|+..|-....+++
T Consensus 993 p---n--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK----Gql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 993 P---N--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK----GQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred c---c--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc----ccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 0 0 1356667888889999999999999999998887665554 45566778999999999998885544444
Q ss_pred h---------------------ccchHHHHHHHHHhhccccchh
Q 005891 349 K---------------------DLQHFRQLVVFLVHNFRVDNSL 371 (671)
Q Consensus 349 ~---------------------~~~~F~~fm~~LL~lf~~d~~l 371 (671)
+ .++-|+.+|+-|+.+.++|.+.
T Consensus 1064 ~k~n~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkderf 1107 (1251)
T KOG0414|consen 1064 SKGNTIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKDERF 1107 (1251)
T ss_pred hcccchhhhchHHHHhhccCcccchhhHHHHHHHHHHhcccccc
Confidence 2 2456788888888888877543
No 131
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.64 E-value=2.2 Score=45.54 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=91.7
Q ss_pred hHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc
Q 005891 153 LPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (671)
Q Consensus 153 Lp~fL~gLf-~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l 231 (671)
+..+++.|. ..+.-++++||..+.+||+-++- +.+ .--.+.++.+....+..++.+|.+|+..+-.++-..|...
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~---~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDK---ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hCh---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 336666655 46667788999999999999884 211 1135567777777766789999999999988888876555
Q ss_pred ccch---------HhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCC-hHhHHHHHHHhcCC
Q 005891 232 VPYY---------ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD-VGPILSIATRQLSS 290 (671)
Q Consensus 232 ~pfl---------p~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d-l~~il~~L~~~L~~ 290 (671)
..-. ..++..+.+.+.+.+++++.+|.+....|+-.- .+. ...++..|.....+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~-----~i~~~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG-----RISDPPKVLSRLLLLYFN 163 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHcC
Confidence 4433 358889999999889999999988877665332 122 35777766655554
No 132
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.62 E-value=0.16 Score=50.25 Aligned_cols=77 Identities=23% Similarity=0.223 Sum_probs=71.2
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~-~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
.+.+||+..++...+.+.....+-|.-|.+-+..+.+. .++++.|.++++++.+-+.|+-.+++|+..++.+|.++.
T Consensus 31 ~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv 108 (183)
T PF10274_consen 31 PEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLV 108 (183)
T ss_pred hhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 34678999999999999988888899999999999888 999999999999999999999999999999999999984
No 133
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.56 E-value=1.4 Score=46.79 Aligned_cols=169 Identities=17% Similarity=0.282 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC
Q 005891 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP 208 (671)
Q Consensus 129 ~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~ 208 (671)
-.+...+.|+-. ..+....+..++|-+++++..++.|..+++|...+.+|..|++.+...
T Consensus 94 ~~~~~~l~w~v~-~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~------------------- 153 (282)
T PF10521_consen 94 GLASHVLSWIVL-SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA------------------- 153 (282)
T ss_pred cccHHHHHHHHH-hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh-------------------
Confidence 344466777755 345555688999999999999999999999999999999999866521
Q ss_pred CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc--------CCcHhHHHHHHHHHHHHHHhcCCCCCC---CCh
Q 005891 209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS--------DKEEKIRVVARETNEELRAIKADPADG---FDV 277 (671)
Q Consensus 209 d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls--------d~~~eIR~~A~~~n~~L~~~i~~~~~~---~dl 277 (671)
. |.. ..-.| ..+-+-+++.+++. +....+=..|..|...|.+.....+.. ..+
T Consensus 154 --~-------~~~--L~~tG-----l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l 217 (282)
T PF10521_consen 154 --E-------WDI--LRRTG-----LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWL 217 (282)
T ss_pred --h-------hHH--HHHcC-----hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHH
Confidence 0 221 11111 13334445555554 333455566667777766654322221 234
Q ss_pred HhHHHH-HHHhcCC----CcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC
Q 005891 278 GPILSI-ATRQLSS----EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (671)
Q Consensus 278 ~~il~~-L~~~L~~----~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s 333 (671)
+.++.. +...+.+ +....+...++-+..+.+..+.....|+..++|.+...+.++.
T Consensus 218 ~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 218 DKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 455532 4444432 2467788888999999999999999999999999999988874
No 134
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.54 E-value=1.7 Score=45.78 Aligned_cols=203 Identities=20% Similarity=0.201 Sum_probs=129.9
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHHhcchhh--hhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhh
Q 005891 38 LNSFSDQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEF 115 (671)
Q Consensus 38 L~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il--~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~f 115 (671)
-.+++|.|..+|.-|.+.|.++........+ ...+-+++-++.-+.|. ..+..+..++.++++- ..-+......+
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~l~gl~~L~~~--~~~~~~~~~~i 81 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPALKGLLALVKM--KNFSPESAVKI 81 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHHHHHHHHHHhC--cCCChhhHHHH
Confidence 3568899999999999999998766554332 23456666677666554 3455555666666541 11111123444
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhhcCC--
Q 005891 116 IPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSP-- 190 (671)
Q Consensus 116 IP~L~e~i~~--~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D-~~~eVR~~a~~~L~~ll~~I~~~~-- 190 (671)
+-.+.+.... .-..+|..+...+..+..-....+...=++|+.|+.+.+.. .+|..=..+-+.+..+++.+....
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~ 161 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA 161 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 4444443332 33588999999999887777666766678888888876633 455555555555555555554310
Q ss_pred ----------------------------------------CCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC-
Q 005891 191 ----------------------------------------SVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGG- 228 (671)
Q Consensus 191 ----------------------------------------~~d~-~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~- 228 (671)
...+ +..+|.+++.+.++...+|..++..+...+...|
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 0112 4567888888888888889889888888777654
Q ss_pred cCcccchHhHHHHHh
Q 005891 229 DQLVPYYADILGAIL 243 (671)
Q Consensus 229 ~~l~pflp~LLp~LL 243 (671)
..+.||...+..++-
T Consensus 242 ~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 242 DSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 347777777776654
No 135
>PF05536 Neurochondrin: Neurochondrin
Probab=95.53 E-value=6.6 Score=45.66 Aligned_cols=229 Identities=14% Similarity=0.142 Sum_probs=141.6
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhh--hhHHHHHHH-----HHHhhcC-------CchHHHHHH-HHHH
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDA-----LCKLSAD-------SDANVQSAA-HLLD 97 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il--~~f~eIf~~-----L~kL~~D-------~d~~Vr~gA-~~Ld 97 (671)
-+..+++.|..++..-|.++.--+.++ +++.-. ..-..||++ |-+++.- +....+.-| ..|.
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~---~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKL---LDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHc---CCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 345566777777766666655444333 332111 111123332 2233321 123344445 5566
Q ss_pred HHHHH--hhcccchhhhhhhHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCchh--HHhchHHHHHHHHHhcCCCChHHH
Q 005891 98 RLVKD--IVTESDQFSIEEFIPLLRERMNVLNP-YVRQFLVGWITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHEIR 172 (671)
Q Consensus 98 rllKd--Iv~e~~~f~L~~fIP~L~e~i~~~np-~vR~~alswL~~L~~ip~~~--li~~Lp~fL~gLf~lL~D~~~eVR 172 (671)
+++.+ +. ....+-.-||.|.+.+..... .+-.-+++++..+.+.+... ++. ..-++.|+..+.+ .+-..
T Consensus 83 ~f~~~~~~a---~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~--~g~v~~L~ei~~~-~~~~~ 156 (543)
T PF05536_consen 83 AFCRDPELA---SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE--SGAVPALCEIIPN-QSFQM 156 (543)
T ss_pred HHcCChhhh---cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh--cCCHHHHHHHHHh-CcchH
Confidence 65551 22 134577889999999987666 88999999999999877643 333 1334444445544 55667
Q ss_pred HHHHHHHHHHHHHhhcCC----CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc---C---cccchHhHHHHH
Q 005891 173 QQADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD---Q---LVPYYADILGAI 242 (671)
Q Consensus 173 ~~a~~~L~~ll~~I~~~~----~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~---~---l~pflp~LLp~L 242 (671)
..|...+..++...+... ...+..+++.+-......+...|.++++-+..|..-.+. . --.+.+.+..++
T Consensus 157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl 236 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGL 236 (543)
T ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHH
Confidence 777788888877665221 123567777777777777778889999999888876631 1 122567777777
Q ss_pred hhhhcC-CcHhHHHHHHHHHHHHHHhcCC
Q 005891 243 LPCISD-KEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 243 L~~Lsd-~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
-..+.. ..++-|..|......+++..+.
T Consensus 237 ~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 237 RDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 777764 4588899999888888888653
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.49 E-value=0.18 Score=61.68 Aligned_cols=236 Identities=16% Similarity=0.116 Sum_probs=153.5
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHh-chHHHHHHHH---------HhcCCC-ChHHHHHHHH
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLF---------NMLSDS-SHEIRQQADS 177 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~-~Lp~fL~gLf---------~lL~D~-~~eVR~~a~~ 177 (671)
......|+..|.+-+.+++|++|-.+.-.+..+.+..+..+.. .+.+++-.+. ++.+|+ ..-||.++.+
T Consensus 72 ~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq 151 (1549)
T KOG0392|consen 72 QWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQ 151 (1549)
T ss_pred cccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHH
Confidence 4556788888888888999999999988888887766654322 1222222211 455554 3579999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHH
Q 005891 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVA 257 (671)
Q Consensus 178 ~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A 257 (671)
+|+.+++.... --+...++++.+.+..++|++|.--+.-+..+..+..+.+..+++.+++.+...+.|++.++|.+|
T Consensus 152 ~L~~~l~~~~~---s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 152 ALGAYLKHMDE---SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHHHHHHhhhh---HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence 99999975531 226778899999999999999988888888777766666667889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC---C--CcHHHHHHHHH-HHHHHHh-hChhhHhhhhhHHHHHHHHhcC
Q 005891 258 RETNEELRAIKADPADGFDVGPILSIATRQLS---S--EWEATRIEALH-WISTLLN-RHRTEVLHFLNDIFDTLLKALS 330 (671)
Q Consensus 258 ~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~---~--~~~~tRiaaL~-WL~~L~~-~~p~~i~~~l~~l~p~LL~~Ls 330 (671)
.+.+........+ -....+..+++.+..++. + +.......-+. ....... .+... .+-..++.|-++..++
T Consensus 229 a~~l~~~~s~~v~-l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~-~n~~~~Lvp~~~p~l~ 306 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVK-LMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQ-QNLEVGLVPRLWPFLR 306 (1549)
T ss_pred HHHhhhhhHHHHh-hhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHH-hhhhhccchhhHHHHH
Confidence 8877544333211 001123444444444332 1 11111111110 0111100 00000 1112467888888888
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 005891 331 DPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 331 D~s~eV~~~~l~lLa~Is~ 349 (671)
..-..|+..+++++..+++
T Consensus 307 ~~i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 307 HTISSVRRAALETLAMLLE 325 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888899999999988884
No 137
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.46 E-value=3.5 Score=45.54 Aligned_cols=211 Identities=17% Similarity=0.201 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHH--HHHHHHHHHHHHHhhcCCC----C----ChHHH
Q 005891 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR--QQADSALWEFLQEIKNSPS----V----DYGRM 197 (671)
Q Consensus 128 p~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR--~~a~~~L~~ll~~I~~~~~----~----d~~~i 197 (671)
+.+|..++..++....-.+.++..|+|.|+.+..++|.....+.+ ..+..++. |+..+-..+. . .++.|
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~-FL~~v~~~~~~~~lf~~~~~L~~I 188 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQ-FLSSVAESPHHKNLFENKPHLQQI 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHH-HHHHHHTSHHHHTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH-HHHHHHcchhHHHHhCCHHHHHHH
Confidence 478899999999998888888999999999999988866443332 33444453 4444332211 1 13444
Q ss_pred HHHH-HHhcCCC-----------CH-----------H-HHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc-CC--c
Q 005891 198 AEIL-VQRAASP-----------DE-----------F-TRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DK--E 250 (671)
Q Consensus 198 I~iL-l~~~~s~-----------d~-----------~-irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls-d~--~ 250 (671)
++.+ +-.+.-. .| . -|..|+..+..+++-.+..+.+-+...+..++...+ ++ +
T Consensus 189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNN 268 (370)
T ss_dssp HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-
T ss_pred HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 4422 2222211 11 1 255678888888877666654444455555544222 22 3
Q ss_pred HhHHHHHHHHHHHHHHhcC-------CCCCCCChHhHH-----HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh
Q 005891 251 EKIRVVARETNEELRAIKA-------DPADGFDVGPIL-----SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 318 (671)
Q Consensus 251 ~eIR~~A~~~n~~L~~~i~-------~~~~~~dl~~il-----~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l 318 (671)
..-++.|......+..-.. +....+|+.++. +.|. --.+...-.|..|++.+..+....|.+ .+
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~---~l 344 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE---QL 344 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH---HH
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH---HH
Confidence 3445555554444432221 112234554333 3344 112445667999999999999998875 56
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHH
Q 005891 319 NDIFDTLLKALSDPSDEVVLLVLEV 343 (671)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~~l~l 343 (671)
..++|.++..|.+++.-|..-|..+
T Consensus 345 ~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 345 LQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhhhhh
Confidence 7899999999999988887766543
No 138
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.46 E-value=4.9 Score=54.58 Aligned_cols=297 Identities=18% Similarity=0.175 Sum_probs=179.6
Q ss_pred HHHHHHHHhhcCCchHHHHHH-HHHHHHHH---Hhhcc-cch---hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHh-hc
Q 005891 73 QIFDALCKLSADSDANVQSAA-HLLDRLVK---DIVTE-SDQ---FSIEEFIPLLRERMNVLNPYVRQFLVGWITVL-DS 143 (671)
Q Consensus 73 eIf~~L~kL~~D~d~~Vr~gA-~~LdrllK---dIv~e-~~~---f~L~~fIP~L~e~i~~~np~vR~~alswL~~L-~~ 143 (671)
-.+|+|...++..+..++.++ ..+..... -++.. ..+ --...+++.+....|++.++.|..-+..|..+ .+
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 346666666666666666666 33333211 12221 111 12466777778888888898888777666644 45
Q ss_pred CCchhHHhchHHHHHHHHHhcCCCChHHHH----HHHHHHHHHHHHhhcCCC------CChHHHHHHHHHhcCCCCHHHH
Q 005891 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ----QADSALWEFLQEIKNSPS------VDYGRMAEILVQRAASPDEFTR 213 (671)
Q Consensus 144 ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~----~a~~~L~~ll~~I~~~~~------~d~~~iI~iLl~~~~s~d~~ir 213 (671)
.+...+..+.-+++.+++-.+.|...|+-. .|..++..+++.+-+... .-...++..++..+.++++.+|
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 666667888999999999999998888776 566666666665543111 1156788888999999999999
Q ss_pred HHHHHHHHHHHhhcCcCcccchHhHHHHH-hhhhcCCc----HhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHH-----
Q 005891 214 LTAITWINEFVKLGGDQLVPYYADILGAI-LPCISDKE----EKIRVVARETNEELRAIKADPADGFDVGPILSI----- 283 (671)
Q Consensus 214 l~al~WI~~~~~l~~~~l~pflp~LLp~L-L~~Lsd~~----~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~----- 283 (671)
..+.+-+..+.+..+.....++..+-..+ .+-...+. ..+.-.-.+++.-.+... +..+|+...+-.
T Consensus 1144 ~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~---p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG---PCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC---CcccCchHHHHHHHHHH
Confidence 99999999998887655432222222222 11111111 111111111222112111 112222211111
Q ss_pred -------------HHHhcC----CCcHHHHHHHHHHHHHHHhhChh---hHhhhhhHHHHHHHHhcCCCCHHHHHHHHHH
Q 005891 284 -------------ATRQLS----SEWEATRIEALHWISTLLNRHRT---EVLHFLNDIFDTLLKALSDPSDEVVLLVLEV 343 (671)
Q Consensus 284 -------------L~~~L~----~~~~~tRiaaL~WL~~L~~~~p~---~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~l 343 (671)
+..... ......|.+|++.+.......+- ...++-++++-.+.+.|.-+.+++...+...
T Consensus 1221 ~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1221 IALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred HHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 111111 11244599999988877666543 3456678899999999999999999999988
Q ss_pred HHHHhhcc-----chHHHHHHHHHhhccccchhh
Q 005891 344 HACIAKDL-----QHFRQLVVFLVHNFRVDNSLL 372 (671)
Q Consensus 344 La~Is~~~-----~~F~~fm~~LL~lf~~d~~lL 372 (671)
+..+-..+ +.....|..|+..+.+.+++.
T Consensus 1301 l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~ls 1334 (3550)
T KOG0889|consen 1301 LRKVLAQDVKLPKELLQSHLRPLLMNLSDHNNLS 1334 (3550)
T ss_pred HHhhhhccccccHHHHHhhHHHHHHhhhHhhhhh
Confidence 88777543 344557777777776665543
No 139
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.28 E-value=6 Score=43.67 Aligned_cols=224 Identities=16% Similarity=0.179 Sum_probs=127.5
Q ss_pred HHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhhcCCCC---C-hHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhcC
Q 005891 156 FLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSPSV---D-YGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGG 228 (671)
Q Consensus 156 fL~gLf~lL~D~~--~eVR~~a~~~L~~ll~~I~~~~~~---d-~~~iI~iLl~~~~-s~d~~irl~al~WI~~~~~l~~ 228 (671)
+++-....+.|++ +.+......+|.. +.++ +.+ + .+.++..+..... -+.--+-.+.+..+..++...|
T Consensus 91 ~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~--~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p 166 (372)
T PF12231_consen 91 IIDHSIESLQNPNSPKSICTHYLWCLSD--QKFS--PKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFP 166 (372)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCC--CcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH
Confidence 5555666776654 4454444333332 1121 222 2 2333333333322 2334455667778888888888
Q ss_pred cCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC---------------CCCCCh-HhHHHHHHHhcCC-C
Q 005891 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP---------------ADGFDV-GPILSIATRQLSS-E 291 (671)
Q Consensus 229 ~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~---------------~~~~dl-~~il~~L~~~L~~-~ 291 (671)
..+......=+|.+++.+.+....+|..|......+...++.. .++ -+ +.+.+.+...+.+ +
T Consensus 167 ~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~ 245 (372)
T PF12231_consen 167 QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQLYCERLKEMIKSKD 245 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHhCcC
Confidence 8888888888888899999999999998876655544333210 001 11 2344455555555 2
Q ss_pred cHHHHHHHHHHHH--HHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----cc----chHHHHHHHH
Q 005891 292 WEATRIEALHWIS--TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DL----QHFRQLVVFL 361 (671)
Q Consensus 292 ~~~tRiaaL~WL~--~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~----~~----~~F~~fm~~L 361 (671)
+. +.+-=-|.. .|.....-+--+|+++.+...-+|++++++.++..|...|.++.. ++ +-.+-++..+
T Consensus 246 ~~--~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl 323 (372)
T PF12231_consen 246 EY--KLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPL 323 (372)
T ss_pred Cc--chHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Confidence 22 222223544 333222234457888999999999999999999999999988871 22 2333344444
Q ss_pred Hhhccccchh---hhhHHHHHHHHHhccC
Q 005891 362 VHNFRVDNSL---LEKRGALIIRRLCVLL 387 (671)
Q Consensus 362 L~lf~~d~~l---Le~Rg~~IIR~Lc~~L 387 (671)
..-++..... .+.| ..++-.+|..+
T Consensus 324 ~~~l~~~~~~~~~~~~~-~~ll~~l~~ll 351 (372)
T PF12231_consen 324 SSQLRREKSSKTKEEVW-WYLLYSLCNLL 351 (372)
T ss_pred HHHhCccccccccHHHH-HHHHHHHhchH
Confidence 4444333211 1333 45666666665
No 140
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.16 E-value=0.75 Score=53.15 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=110.4
Q ss_pred hHhhhHHHHHhccC-CCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHh
Q 005891 29 ILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (671)
Q Consensus 29 yl~~Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~---~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdI 103 (671)
.+++-+..++.|.. -+|..++.+||+.+.+.+.-+ +.+ ..-+++.+.|.+++.|++..|+..+ .++-.++-+.
T Consensus 373 ~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef 450 (678)
T KOG1293|consen 373 ILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF 450 (678)
T ss_pred HHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc
Confidence 44555555555553 567889999999998876443 333 2346888999999999999999877 4444433322
Q ss_pred hcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH-hchHH-HHHHHHHhcCCCChHHHHHHHHHHHH
Q 005891 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML-GFLPD-FLDGLFNMLSDSSHEIRQQADSALWE 181 (671)
Q Consensus 104 v~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li-~~Lp~-fL~gLf~lL~D~~~eVR~~a~~~L~~ 181 (671)
-.-.+.|--.-+|..+.+.+.+.++.+|+..+..++.+.--.+.... ..+-. +-.++..+.+|++.+|..+|-+.|..
T Consensus 451 s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 451 SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22234577778899999999999999999999999877655554422 22333 34555678899999999999998888
Q ss_pred HHH
Q 005891 182 FLQ 184 (671)
Q Consensus 182 ll~ 184 (671)
|+-
T Consensus 531 l~c 533 (678)
T KOG1293|consen 531 LTC 533 (678)
T ss_pred hhc
Confidence 874
No 141
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.11 E-value=0.69 Score=50.36 Aligned_cols=226 Identities=17% Similarity=0.251 Sum_probs=131.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC---CCCC-----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 005891 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS---PSVD-----YGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (671)
Q Consensus 155 ~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~---~~~d-----~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l 226 (671)
+++.-|...|..=.-|.|+.+......+++.-... |.++ .++++.+|+....++| +.+.+=..++++++.
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d--ial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD--IALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT--THHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc--ccchHHHHHHHHHhh
Confidence 34445555677777888988888888777643221 1222 2677788887777554 445554555555442
Q ss_pred cC--cCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCC---CCChHhHHHHHHHhcCCCcHHHHHHHHH
Q 005891 227 GG--DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD---GFDVGPILSIATRQLSSEWEATRIEALH 301 (671)
Q Consensus 227 ~~--~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~---~~dl~~il~~L~~~L~~~~~~tRiaaL~ 301 (671)
.. ..++ -+..+--++..+..+..+|-.-|-.+...++..-..... .-+++.+.......+.++++-||--++.
T Consensus 154 e~l~~~iL--~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 154 ESLAKIIL--YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp HHHHHHHH--TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred HHHHHHHh--CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 11 0000 012222345556667777655554444443321000000 1368899999999999999999999999
Q ss_pred HHHHHHhhC--hhhHhhhhh--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc---hH-------HHHHHHHHhhcc-
Q 005891 302 WISTLLNRH--RTEVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ---HF-------RQLVVFLVHNFR- 366 (671)
Q Consensus 302 WL~~L~~~~--p~~i~~~l~--~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~---~F-------~~fm~~LL~lf~- 366 (671)
.|+.+..-- -+-|..|.+ .-+..++..|+|++..|+..|..+..-+..|+. -- +.-+...+.-|.
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~ 311 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHT 311 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTT
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCC
Confidence 999887542 233455554 467888899999999999999999888774321 11 112222333332
Q ss_pred ---ccchhhhhHHHHHHHHHhc
Q 005891 367 ---VDNSLLEKRGALIIRRLCV 385 (671)
Q Consensus 367 ---~d~~lLe~Rg~~IIR~Lc~ 385 (671)
+|....++| .++|+++-.
T Consensus 312 ~~~~D~qf~~EK-~~li~~i~~ 332 (335)
T PF08569_consen 312 DRTDDEQFEDEK-AYLIKQIES 332 (335)
T ss_dssp T--S-CHHHHHH-HHHHHHHHT
T ss_pred CCCccccHHHHH-HHHHHHHHh
Confidence 456777887 788887753
No 142
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.05 E-value=0.17 Score=50.24 Aligned_cols=139 Identities=20% Similarity=0.248 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhcC-CchhHHhchHHHHHHH------------HHhcCCCChHHHHHHHHHHHHHHHHhhcC------
Q 005891 129 YVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGL------------FNMLSDSSHEIRQQADSALWEFLQEIKNS------ 189 (671)
Q Consensus 129 ~vR~~alswL~~L~~i-p~~~li~~Lp~fL~gL------------f~lL~D~~~eVR~~a~~~L~~ll~~I~~~------ 189 (671)
.+|+.++.++..+.+. ++..+..|.+.|+|.- .-++.||++.||.+|.+.+..+++..+..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4899999999999887 8888999999998765 25779999999999999999999865421
Q ss_pred ---CCC-------ChHHHHH----HHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcC-c-ccchHhHHHHHhhhhcCCcHh
Q 005891 190 ---PSV-------DYGRMAE----ILVQRAASP-DEFTRLTAITWINEFVKLGGDQ-L-VPYYADILGAILPCISDKEEK 252 (671)
Q Consensus 190 ---~~~-------d~~~iI~----iLl~~~~s~-d~~irl~al~WI~~~~~l~~~~-l-~pflp~LLp~LL~~Lsd~~~e 252 (671)
+.. .++.++- .|+..++.. +..+-...+.-+..+++..|-. + -.++++++..+.+.+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 000 1233332 233333332 3334444556666666654322 1 236899999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005891 253 IRVVARETNEELRAI 267 (671)
Q Consensus 253 IR~~A~~~n~~L~~~ 267 (671)
+|..+.-+.+.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999998888776644
No 143
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=12 Score=45.62 Aligned_cols=217 Identities=18% Similarity=0.172 Sum_probs=136.0
Q ss_pred HHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC-----ChHHHHHHHHHhcCCC
Q 005891 134 LVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-----DYGRMAEILVQRAASP 208 (671)
Q Consensus 134 alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~-----d~~~iI~iLl~~~~s~ 208 (671)
.+..|+.++...|.++...|-..+=.++.-+.++++-|+..|..|+-......+...-. +.+.+++-+-...++.
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 44555666666777777777777777777899999999999999999999877531100 1233444444344422
Q ss_pred C--HHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCC-cH-----------hHHHHH-----------------
Q 005891 209 D--EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-EE-----------KIRVVA----------------- 257 (671)
Q Consensus 209 d--~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~-~~-----------eIR~~A----------------- 257 (671)
+ +.+.. -+..+++.++...+|++..++..++..+.+- .. -+|.++
T Consensus 648 ~~s~~~~~----Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~ 723 (1014)
T KOG4524|consen 648 GMSPRVPD----VLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHI 723 (1014)
T ss_pred CCCchhHH----HHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 1 22111 1223445556666777777766666555421 11 012111
Q ss_pred ---HHHH----------H----HHHH---------hcC------CC---------------CCCCC-----------hHh
Q 005891 258 ---RETN----------E----ELRA---------IKA------DP---------------ADGFD-----------VGP 279 (671)
Q Consensus 258 ---~~~n----------~----~L~~---------~i~------~~---------------~~~~d-----------l~~ 279 (671)
.+.. . ..++ ... .+ .+.-| +..
T Consensus 724 ~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~k 803 (1014)
T KOG4524|consen 724 SQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVLK 803 (1014)
T ss_pred HHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHHH
Confidence 0000 0 0000 000 00 00011 245
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHH---HHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchH
Q 005891 280 ILSIATRQLSSEWEATRIEALHWIS---TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF 354 (671)
Q Consensus 280 il~~L~~~L~~~~~~tRiaaL~WL~---~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F 354 (671)
|+......+.+++-..|+.+|+-+. -+....++.+.|..+...|.++.++.+.+|.++..+++++..+++..+.|
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 5566677788999999999998765 56777899999999999999999999999999999999999999644444
No 144
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=1.3 Score=47.57 Aligned_cols=183 Identities=15% Similarity=0.176 Sum_probs=126.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc-----c
Q 005891 159 GLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-----V 232 (671)
Q Consensus 159 gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l-----~ 232 (671)
.+|.+.+.++++-...+.+||.++.+... ..+ .++.+|.+-.-+..++..++.-++.-|..+++-+...- .
T Consensus 47 difgfeNenhrekttlcVscLERLfkake---gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseill 123 (524)
T KOG4413|consen 47 DIFGFENENHREKTTLCVSCLERLFKAKE---GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILL 123 (524)
T ss_pred CCcccccccccchhhhHHHHHHHHHhhcc---chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHH
Confidence 34567888888888889999999998553 244 57788888888888899999999998888887665321 1
Q ss_pred cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC-----CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005891 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD-----PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (671)
Q Consensus 233 pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~-----~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~ 307 (671)
---.+++|.++.|+..++.++.++|.+....+...-.. +++-.|--...+. --.-+...|+.++..++.+.
T Consensus 124 vvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnl----aakcndiaRvRVleLIieif 199 (524)
T KOG4413|consen 124 VVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNL----AAKCNDIARVRVLELIIEIF 199 (524)
T ss_pred HhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHH----HhhhhhHHHHHHHHHHHHHH
Confidence 12567899999999999999999998877655322100 0111111111111 11224557999999999999
Q ss_pred hhChhhHhh-hhhHHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 005891 308 NRHRTEVLH-FLNDIFDTLLKALSD-PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 308 ~~~p~~i~~-~l~~l~p~LL~~LsD-~s~eV~~~~l~lLa~Is 348 (671)
...|..... --.+++..|..-|.- ++..|+..++++.-.+.
T Consensus 200 SiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 200 SISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred hcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 998877543 345788888888887 55567777777655444
No 145
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.00 E-value=0.16 Score=50.24 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHh---hcCCch
Q 005891 72 NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL---DSVPDI 147 (671)
Q Consensus 72 ~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L---~~ip~~ 147 (671)
.-.+|.++..+...+.--+=-| .....+++.-..+.---.++++|+++...+.+.|+.|...++..|..+ ....|.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4555666655555554333333 222222221111111235899999999999999999999999999999 778889
Q ss_pred hHHhchHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHHHHH
Q 005891 148 DMLGFLPDFLDGLFNMLSD-----------SSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 148 ~li~~Lp~fL~gLf~lL~D-----------~~~eVR~~a~~~L~~ll~~ 185 (671)
++.+|+..+|+.+-.+.+. ..+.++....+.|..|-+.
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~ 165 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERN 165 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHh
Confidence 9999999999976522221 2345555555555544443
No 146
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=11 Score=44.84 Aligned_cols=346 Identities=17% Similarity=0.180 Sum_probs=179.6
Q ss_pred HhccCCC----CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc-CCchHHHHHHHHH----------------
Q 005891 38 LNSFSDQ----DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAAHLL---------------- 96 (671)
Q Consensus 38 L~~l~D~----d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~-D~d~~Vr~gA~~L---------------- 96 (671)
...++|+ -.-+|..+++.+..+.- -+-...||..|+.+...++ |+.. +|.+..
T Consensus 92 ~qvl~ne~~~~p~fi~Nk~aqvlttLf~---~eYp~~WnsfF~dlmsv~~~~s~~---~~~dfflkvllaIdsEiad~dv 165 (980)
T KOG2021|consen 92 FQVLGNEQTKLPDFIMNKIAQVLTTLFM---LEYPDCWNSFFDDLMSVFQVDSAI---SGLDFFLKVLLAIDSEIADQDV 165 (980)
T ss_pred HHHhCcccCCCChHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHhcccch---hhHHHHHHHHHHhhhHhhhccc
Confidence 3455666 46677777777766531 1222347777777665443 2211 112211
Q ss_pred ---------HHHHHHhhcccchhhhhhhHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHh
Q 005891 97 ---------DRLVKDIVTESDQFSIEEFIPLLRERMN----VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM 163 (671)
Q Consensus 97 ---------drllKdIv~e~~~f~L~~fIP~L~e~i~----~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~l 163 (671)
+.++||-.. +.+++.+...--+.+. ..||.+--.++.++..+.+..+++++. =+-|++-|+++
T Consensus 166 ~rT~eei~knnliKDaMR---~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~f 241 (980)
T KOG2021|consen 166 IRTKEEILKNNLIKDAMR---DNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKF 241 (980)
T ss_pred cCChHHHHHHhhHHHHHH---hhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHH
Confidence 224444443 2344444444444442 348999999999999999999888876 34455666667
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhcCC--------------------------CCC------------------------
Q 005891 164 LSDSSHEIRQQADSALWEFLQEIKNSP--------------------------SVD------------------------ 193 (671)
Q Consensus 164 L~D~~~eVR~~a~~~L~~ll~~I~~~~--------------------------~~d------------------------ 193 (671)
+. .+++|.+||.|+-+.+..=- +| +.|
T Consensus 242 l~--ieelR~aac~cilaiVsKkM-kP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~ln 318 (980)
T KOG2021|consen 242 LN--IEELRIAACNCILAIVSKKM-KPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLN 318 (980)
T ss_pred Hh--HHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhh
Confidence 76 78999999999776553110 01 011
Q ss_pred --------------hHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhc-----CcCcccchHhHHHHHhhhhcCCc---
Q 005891 194 --------------YGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLG-----GDQLVPYYADILGAILPCISDKE--- 250 (671)
Q Consensus 194 --------------~~~iI~iLl~~~~s~d~~irl~al~-WI~~~~~l~-----~~~l~pflp~LLp~LL~~Lsd~~--- 250 (671)
+-.++|++++.+.+.+.++-....- |.+-+.-+- .+...-++.+++-++.+.+.|.+
T Consensus 319 seld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~ 398 (980)
T KOG2021|consen 319 SELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYF 398 (980)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhh
Confidence 1234555555544443333222222 222221111 11223356666666666665431
Q ss_pred ---------HhHH-HHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhc-------CCCcHHHHHHHHHHHHHHHhhChhh
Q 005891 251 ---------EKIR-VVARETNEELRAIKADPADGFDVGPILSIATRQL-------SSEWEATRIEALHWISTLLNRHRTE 313 (671)
Q Consensus 251 ---------~eIR-~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L-------~~~~~~tRiaaL~WL~~L~~~~p~~ 313 (671)
+|.+ +..++-...+++.+.. +|-+-+.+.+.+.+ ..++|+.-+.|+.-+..+.+..+..
T Consensus 399 nddn~tg~EeEa~f~e~RkkLk~fqdti~~----idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~ 474 (980)
T KOG2021|consen 399 NDDNVTGDEEEAFFEEVRKKLKNFQDTIVV----IDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNN 474 (980)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccc
Confidence 0111 0111122223333322 22222233333322 3457999999999999999997765
Q ss_pred Hhhhhh----------HHHHHHHHh--cCCCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHhhc--cccchhhhhH
Q 005891 314 VLHFLN----------DIFDTLLKA--LSDPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNF--RVDNSLLEKR 375 (671)
Q Consensus 314 i~~~l~----------~l~p~LL~~--LsD~s~eV~~~~l~lLa~Is~----~~~~F~~fm~~LL~lf--~~d~~lLe~R 375 (671)
-..+.+ .+.+.++++ ++.+.+.|-..-++++-|+.+ +.++.--++...+..+ ++.+-.+..|
T Consensus 475 ~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~R 554 (980)
T KOG2021|consen 475 YFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLR 554 (980)
T ss_pred cccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchH
Confidence 443322 344555543 455666776677777777652 3344444444444432 2223344666
Q ss_pred HHHHHHHHhccCCh------HHHHHHHHHhh
Q 005891 376 GALIIRRLCVLLDA------ERVYRELSTIL 400 (671)
Q Consensus 376 g~~IIR~Lc~~L~~------E~Iy~~la~iL 400 (671)
+-+..-+.-++|+. |.|-..+.+.|
T Consensus 555 awYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 555 AWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555543 45555555555
No 147
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.95 E-value=9.2 Score=44.02 Aligned_cols=348 Identities=17% Similarity=0.188 Sum_probs=179.6
Q ss_pred HHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc--hh-hhhHHHHHHHHHHhhcCCc--hHHHHH
Q 005891 18 LYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG--DF-IIFFNQIFDALCKLSADSD--ANVQSA 92 (671)
Q Consensus 18 ~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~--~i-l~~f~eIf~~L~kL~~D~d--~~Vr~g 92 (671)
.+|+--.+++..++..+||++..++.++..||....|.+.+|-|-++. .+ +| +++|.+...+++ +.||+=
T Consensus 9 alAdtD~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LP-----v~~Ll~q~~~~~~s~~vrnf 83 (501)
T PF13001_consen 9 ALADTDEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLP-----VEALLKQYKEPSDSSFVRNF 83 (501)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCc-----HHHHHHHHhCCCCchHHHHH
Confidence 344445567788999999999999999999999999999999887765 23 22 456677776666 677776
Q ss_pred HH-HHHHHHHHhhcccchhhhhhhHHHHHHhhcC---------------------------------------------C
Q 005891 93 AH-LLDRLVKDIVTESDQFSIEEFIPLLRERMNV---------------------------------------------L 126 (671)
Q Consensus 93 A~-~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~---------------------------------------------~ 126 (671)
+- .+..-+. ..+...-..++|.+.+.+.. .
T Consensus 84 sliyi~~g~~----Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (501)
T PF13001_consen 84 SLIYIEMGFD----RLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLS 159 (501)
T ss_pred HHHHHHHhhh----cCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhc
Confidence 62 2211111 00011112223333333221 1
Q ss_pred CHHHHHHHHHHHHHhhc--------CCch--------hH-------------------H-------h-----chH--HHH
Q 005891 127 NPYVRQFLVGWITVLDS--------VPDI--------DM-------------------L-------G-----FLP--DFL 157 (671)
Q Consensus 127 np~vR~~alswL~~L~~--------ip~~--------~l-------------------i-------~-----~Lp--~fL 157 (671)
+.....++..|...+.- .|+. .. . . .++ +.+
T Consensus 160 ~~~~~~~l~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~ 239 (501)
T PF13001_consen 160 DFCDDVFLAPWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERF 239 (501)
T ss_pred chHHHHHcchhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHH
Confidence 11223333344443310 0100 00 0 0 000 001
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC--C---------CCHHHHHHHHHHHHHHHhh
Q 005891 158 DGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA--S---------PDEFTRLTAITWINEFVKL 226 (671)
Q Consensus 158 ~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~--s---------~d~~irl~al~WI~~~~~l 226 (671)
..+.-..+|++.+|-..|+..|.++.-. .+=+.+|..|..... . ..+.+|...+.++..=..
T Consensus 240 ~~~liAsad~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~- 312 (501)
T PF13001_consen 240 PPLLIASADSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI- 312 (501)
T ss_pred hheeeEEeCCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH-
Confidence 1111233555666666555544333321 223445555554333 1 135566666665543111
Q ss_pred cCcCcccchHhHHHHHhhhhcCC--cHhHHHHHHHHH---HHHHHhcCCCCCCCChHhHHHHHHHh----c--------C
Q 005891 227 GGDQLVPYYADILGAILPCISDK--EEKIRVVARETN---EELRAIKADPADGFDVGPILSIATRQ----L--------S 289 (671)
Q Consensus 227 ~~~~l~pflp~LLp~LL~~Lsd~--~~eIR~~A~~~n---~~L~~~i~~~~~~~dl~~il~~L~~~----L--------~ 289 (671)
. ....|.++.++..++..+ ...+|..+.+.. ....+.+.. --+..+-+.+..+ + .
T Consensus 313 A----a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~----~~l~~l~~~i~~~g~p~~~~~~~~~~~ 384 (501)
T PF13001_consen 313 A----ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISP----QILKLLRPVILSQGWPLIQDSSSQSNS 384 (501)
T ss_pred H----HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCH----HHHHHHHHHHHhcCccccccccccCCC
Confidence 1 114577777777777766 445555554433 211111110 0011222222221 1 2
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----ccc----hHHHHHHHH
Q 005891 290 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DLQ----HFRQLVVFL 361 (671)
Q Consensus 290 ~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~----~~~----~F~~fm~~L 361 (671)
.+....|-.+.+.|+.|..+.|.-+..- -.++..|..+|.++.++|+...-+.|+.+.. ... .-...+..+
T Consensus 385 ~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l 463 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELL 463 (501)
T ss_pred cccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 3457789999999999999999876332 3567777788899999999888887777762 111 122233333
Q ss_pred HhhccccchhhhhHHHHHHHHHhccCChHHH
Q 005891 362 VHNFRVDNSLLEKRGALIIRRLCVLLDAERV 392 (671)
Q Consensus 362 L~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~I 392 (671)
+..... ...-.+| -..+|.....++.+.+
T Consensus 464 ~~~~~~-~~~~~~R-~~avk~an~~fpf~d~ 492 (501)
T PF13001_consen 464 LLSYIQ-SEVRSCR-YAAVKYANACFPFSDV 492 (501)
T ss_pred HHhhcc-chhHHHH-HHHHHHHHHhCCccch
Confidence 333322 2333455 4456666666665433
No 148
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=1.7 Score=51.23 Aligned_cols=211 Identities=18% Similarity=0.229 Sum_probs=102.3
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhH
Q 005891 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFI 116 (671)
Q Consensus 37 vL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fI 116 (671)
+-.+|.-+.+-.|++|...|+.++-.....+..+ =..|-.+++|.+-++-.-| ...++| -.+ +-+++.++
T Consensus 287 Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c----N~elE~lItd~NrsIat~A--ITtLLK-TG~---e~sv~rLm 356 (865)
T KOG1078|consen 287 LQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC----NLDLESLITDSNRSIATLA--ITTLLK-TGT---ESSVDRLM 356 (865)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc----chhHHhhhcccccchhHHH--HHHHHH-hcc---hhHHHHHH
Confidence 3444556666667776666666653222211111 1123344555554443333 222333 111 23566666
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhhcCCCC---
Q 005891 117 PLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSV--- 192 (671)
Q Consensus 117 P~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~-D~~~eVR~~a~~~L~~ll~~I~~~~~~--- 192 (671)
-.+...+.+.+-..+.-++..+..+...-+..-..+++ ||.. +|. +..-+-+++...++....++.....+.
T Consensus 357 ~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~-FL~~---~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~ 432 (865)
T KOG1078|consen 357 KQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMN-FLSN---MLREEGGFEFKRAIVDAIIDIIEENPDSKERGLE 432 (865)
T ss_pred HHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHH-HHHH---HHHhccCchHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 66666666665555555555555554443322111221 1111 111 223333333333333333333221111
Q ss_pred ---------ChH---------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHH
Q 005891 193 ---------DYG---------------------RMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (671)
Q Consensus 193 ---------d~~---------------------~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~L 242 (671)
.+. +.+-++.++..=.+..+|-.|...+..|. .....+ .|.+.-.+
T Consensus 433 ~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg-~~~~~l---~~sI~vll 508 (865)
T KOG1078|consen 433 HLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG-AQDVVL---LPSILVLL 508 (865)
T ss_pred HHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh-cCCCCc---cccHHHHH
Confidence 111 12222222222223467778888888777 223233 56777777
Q ss_pred hhhhcCCcHhHHHHHHHHHHHHH
Q 005891 243 LPCISDKEEKIRVVARETNEELR 265 (671)
Q Consensus 243 L~~Lsd~~~eIR~~A~~~n~~L~ 265 (671)
-.|+-|.+.++|+.|.-....+.
T Consensus 509 kRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 509 KRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHhcCchHHHHHHHHHHHHHhh
Confidence 78999999999999986665544
No 149
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=12 Score=44.64 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=68.3
Q ss_pred cCcCcccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhcCCCCCCC-Ch-HhHHH---HHHHhcCCCcHHHHHHHH
Q 005891 227 GGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGF-DV-GPILS---IATRQLSSEWEATRIEAL 300 (671)
Q Consensus 227 ~~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~~~~-dl-~~il~---~L~~~L~~~~~~tRiaaL 300 (671)
.++.+.||+|.+-..+++.+. -++-+.|-........+..-+++ .+ ++ ..++. .|=+.-. +....|.+.|
T Consensus 561 ~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e---~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL 636 (978)
T KOG1993|consen 561 SEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE---HIAPYASTIVQYLPLLWEESE-EEPLLRCALL 636 (978)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHH
Confidence 456788999888888888765 23334454444444444433332 22 22 12222 2222222 3345688888
Q ss_pred HHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHH-H--HHHHHHHHHHHhh
Q 005891 301 HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE-V--VLLVLEVHACIAK 349 (671)
Q Consensus 301 ~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~e-V--~~~~l~lLa~Is~ 349 (671)
.-+..+....+.+-.++.+-+.|.+-.+..=++|+ | ..-..++|.-.-+
T Consensus 637 ~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~ 688 (978)
T KOG1993|consen 637 ATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLM 688 (978)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHh
Confidence 89999988887777777777788665554434444 2 2345566655554
No 150
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.81 E-value=0.49 Score=50.45 Aligned_cols=145 Identities=16% Similarity=0.192 Sum_probs=100.8
Q ss_pred HHHHHHHHHhhcCcCccc--chHhHHH-HHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCc
Q 005891 216 AITWINEFVKLGGDQLVP--YYADILG-AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW 292 (671)
Q Consensus 216 al~WI~~~~~l~~~~l~p--flp~LLp-~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~ 292 (671)
|+.....+++.....+-| .+..++. .++|++..++++||+.|.+|.+...=.-.+ --.+.++.+...+..+.
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~-----~a~~~l~l~~~~~~~~~ 77 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE-----LAKEHLPLFLQALQKDD 77 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHhCC
Confidence 445555555554444444 3457776 455999999999999999998765433211 11355666777776678
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhh---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchH--HHHHHHH
Q 005891 293 EATRIEALHWISTLLNRHRTEVLHFLN---------DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF--RQLVVFL 361 (671)
Q Consensus 293 ~~tRiaaL~WL~~L~~~~p~~i~~~l~---------~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F--~~fm~~L 361 (671)
...|+.|++.+..+...++.++.+-.. .+...+.+.|.+.+++++..+++-++++--.+..- ..++..|
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L 157 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL 157 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 999999999999999888776654433 58888899999999999999999999976322221 3455555
Q ss_pred Hhhc
Q 005891 362 VHNF 365 (671)
Q Consensus 362 L~lf 365 (671)
+-++
T Consensus 158 ll~y 161 (298)
T PF12719_consen 158 LLLY 161 (298)
T ss_pred HHHH
Confidence 5533
No 151
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.70 E-value=1.3 Score=51.55 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=77.5
Q ss_pred HHhhcCCchHHHHHH-HHHHHHHHHhhccc-----chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc
Q 005891 79 CKLSADSDANVQSAA-HLLDRLVKDIVTES-----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (671)
Q Consensus 79 ~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~-----~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~ 152 (671)
.+++....-..|.+- +.+..++.+...+. -...++.++.++.||+.|.+|.+|..++..+..+...+.. ...-
T Consensus 305 ~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk-~~~~ 383 (1128)
T COG5098 305 DELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK-TVGR 383 (1128)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-ccch
Confidence 345555556778776 77777777766542 1346889999999999999999999998877766544431 1122
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 153 Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
=.++..-..+.+.|-..-||+.|.+.+..++-.
T Consensus 384 r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 384 RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 345556666789999999999999999888863
No 152
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.70 E-value=0.21 Score=58.03 Aligned_cols=192 Identities=17% Similarity=0.161 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 005891 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (671)
Q Consensus 70 ~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~l 149 (671)
|-..+.|.|++++..+|-.+|--- |..+-+=+-.-+++..-+.+.|.+...+.|.|+.+|.--+-.+..+++..+..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~L--L~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLL--LQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHH--HHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 444678888888888888887533 33332211111123345678888888888888888888888888887766554
Q ss_pred HhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 005891 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR-MAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (671)
Q Consensus 150 i~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~-iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~ 228 (671)
..=.+++.-+.+.-.|.+..+|..+.-||++....+. +.+ -.. ++......+.++-.-.|..++.-+..-.+..+
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~--~~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA--ASV-RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD 479 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccc--hhh-hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence 2234556666666678888888887777665543221 000 011 11111222333333345544443322222222
Q ss_pred cCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC
Q 005891 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 229 ~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
.. .--.+|+|.+.+...|.+..+|..|.++...++....+
T Consensus 480 ~~--~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 480 QS--EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hh--hhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 11 12567888888889999999999999988877665543
No 153
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.46 E-value=6.6 Score=41.29 Aligned_cols=224 Identities=15% Similarity=0.120 Sum_probs=127.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hhcCCchhHHh-chHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 005891 119 LRERMNVLNPYVRQFLVGWITV-LDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR 196 (671)
Q Consensus 119 L~e~i~~~np~vR~~alswL~~-L~~ip~~~li~-~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~ 196 (671)
|.+.+.+.++.+|.-+++.+.. +..+|+..+.. -...+++=....+.| ...+..+ ..++..++ ..++-+......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~-~~~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALV-KMKNFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHH-hCcCCChhhHHH
Confidence 5567888999999999999984 45566543322 122222222335543 3345444 46666666 233222224567
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhcCCCCC
Q 005891 197 MAEILVQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPAD 273 (671)
Q Consensus 197 iI~iLl~~~~s~--d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~~ 273 (671)
++..+.+..+-+ -...|..+...+..+++-....+...-+.++.+++..+. ..||.-=-.+-+.+..+++...-
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--- 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--- 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---
Confidence 777777655433 346788888888888876655555556777888887666 34565333344444444433321
Q ss_pred CCChHhHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 274 GFDVGPILSIATRQLS-----SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 274 ~~dl~~il~~L~~~L~-----~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
+-..+++.+++..++= ..+.+..++.=+--..|... -..--.+.+..+|.|+..|+..++.|..-++++|..-.
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~c-l~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNC-LSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHH-hcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 1123455555555551 11111122222222222222 11112346778999999999999999999999887655
Q ss_pred h
Q 005891 349 K 349 (671)
Q Consensus 349 ~ 349 (671)
+
T Consensus 237 ~ 237 (262)
T PF14500_consen 237 E 237 (262)
T ss_pred H
Confidence 3
No 154
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=9.3 Score=41.22 Aligned_cols=235 Identities=14% Similarity=0.153 Sum_probs=136.7
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc----hhhh-hHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHh
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~----~il~-~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdI 103 (671)
.....|-+.+++..+|..|..-||.-+.-|...+.. +++. .=++|++.+..++...+-+|-++| +.+.++..--
T Consensus 80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp 159 (524)
T KOG4413|consen 80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP 159 (524)
T ss_pred chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH
Confidence 345667778899999999999999999888877652 3432 235889999999999999999999 6666543200
Q ss_pred hcccchhhhhhhHHH-HHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc-hHHHHHHHHHhcCC-CChHHHHHHHHHHH
Q 005891 104 VTESDQFSIEEFIPL-LRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSD-SSHEIRQQADSALW 180 (671)
Q Consensus 104 v~e~~~f~L~~fIP~-L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~-Lp~fL~gLf~lL~D-~~~eVR~~a~~~L~ 180 (671)
..-..-|.-+..=|. ++..-.-.|.-+|.-+++.|-.+-++.+...... =.-+++-|..=|.. .+.-||-.+.+...
T Consensus 160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 000000111111111 1112223466788888888888888877543321 12233434333433 44557776666555
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHH------hhcCcCcccchHhHHHHHhhhhcCCcHh
Q 005891 181 EFLQEIKNSPSVDYGRMAEILVQRA--ASPDEFTRLTAITWINEFV------KLGGDQLVPYYADILGAILPCISDKEEK 252 (671)
Q Consensus 181 ~ll~~I~~~~~~d~~~iI~iLl~~~--~s~d~~irl~al~WI~~~~------~l~~~~l~pflp~LLp~LL~~Lsd~~~e 252 (671)
++...=.....+.-..+|..+-+.+ .+.++.-+..++-....|. ++.++....-++-.+.+.+.++.-.+|+
T Consensus 240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPD 319 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCch
Confidence 5554221111122244444443333 3446666665544333222 2234444455777788888888888999
Q ss_pred HHHHHHHHHHHH
Q 005891 253 IRVVARETNEEL 264 (671)
Q Consensus 253 IR~~A~~~n~~L 264 (671)
..++|.++.+.+
T Consensus 320 aieaAiDalGil 331 (524)
T KOG4413|consen 320 AIEAAIDALGIL 331 (524)
T ss_pred HHHHHHHHHHhc
Confidence 888888876644
No 155
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.19 E-value=4.4 Score=45.60 Aligned_cols=307 Identities=14% Similarity=0.123 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHH--------HH-HhhcCCchHHHHHH-HHHHHHHH---Hhhc--
Q 005891 42 SDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDA--------LC-KLSADSDANVQSAA-HLLDRLVK---DIVT-- 105 (671)
Q Consensus 42 ~D~d~rVR~~A~eaL~nI~Kv~~~-~il~~f~eIf~~--------L~-kL~~D~d~~Vr~gA-~~LdrllK---dIv~-- 105 (671)
...+.+||..|...+....|.... ..-.||.-+||. |. -.+.|+.+..|.-| ..+..++. ...+
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345789999999888887776543 334677666652 22 24578888888777 54555443 1111
Q ss_pred c-c-----chhhhh-------hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh--HHhchHHHHHHHHHhcCCCChH
Q 005891 106 E-S-----DQFSIE-------EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHE 170 (671)
Q Consensus 106 e-~-----~~f~L~-------~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~--li~~Lp~fL~gLf~lL~D~~~e 170 (671)
+ . ..|++. ..-=++........|.+-..++.++.++.+..+-+ =+.++-+|...+.+++...++.
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 1 0 112211 00011112223456778888999999888765544 2467888888888999889999
Q ss_pred HHHHHHHHHHHHHHHhhcCC------------------C----------CChHHHHHH----------------------
Q 005891 171 IRQQADSALWEFLQEIKNSP------------------S----------VDYGRMAEI---------------------- 200 (671)
Q Consensus 171 VR~~a~~~L~~ll~~I~~~~------------------~----------~d~~~iI~i---------------------- 200 (671)
||..+...++.++..-+--| + .|-+...+.
T Consensus 166 v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeee
Confidence 99988887777765332111 0 000000000
Q ss_pred ------------HHHhcCCC--CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHH
Q 005891 201 ------------LVQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (671)
Q Consensus 201 ------------Ll~~~~s~--d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (671)
...+..+. -..+|++|+.-+..+....+- ..-|+-++.-++-.+|.+.+|.+..-+.++.+++..
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~-~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~ 324 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSM-TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGT 324 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHH
Confidence 01111110 025788888777666654431 233678899999999999999999988888877643
Q ss_pred hcC-C----C------------------CC----------------------------CCCh--HhHHHHHHHhc-CCCc
Q 005891 267 IKA-D----P------------------AD----------------------------GFDV--GPILSIATRQL-SSEW 292 (671)
Q Consensus 267 ~i~-~----~------------------~~----------------------------~~dl--~~il~~L~~~L-~~~~ 292 (671)
... + + .. +++- .....+..... ++++
T Consensus 325 ~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~ 404 (728)
T KOG4535|consen 325 GLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKN 404 (728)
T ss_pred HHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHH
Confidence 221 1 0 00 0000 00111111111 2334
Q ss_pred HHHHHHHHHHHHHHHh-hChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 293 EATRIEALHWISTLLN-RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 293 ~~tRiaaL~WL~~L~~-~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
-..|.+|+..++.+.- .+-.....+..+-+..++.++.|++=+++.++.|.++.|++
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITd 462 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITD 462 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHH
Confidence 5568888877764432 24445566788889999999999999999999999999983
No 156
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.16 E-value=0.61 Score=54.31 Aligned_cols=137 Identities=12% Similarity=0.153 Sum_probs=106.5
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCCh-HhHH
Q 005891 203 QRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-GPIL 281 (671)
Q Consensus 203 ~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il 281 (671)
..++-.+.+.|..-..-+.+-++..++++. ..+++|.++..+++.+ ++.....-+.+.......+ +| ..++
T Consensus 261 eel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~-eyq~~i~ 332 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEE-EYQVRII 332 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhcccc-ccccchh
Confidence 445556666666666666666666677765 7899999999998776 4455555566555432211 23 4699
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 282 SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 282 ~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
+.|.+.|...+..+|+.=|.-+-.+.+..++++. .+.+||.+...+.|.++-+|..++..+..++.
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~--~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL--NDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh--cchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988876 88999999999999999999999999988884
No 157
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=94.07 E-value=0.65 Score=43.24 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhc-c-cc-------------hhh
Q 005891 47 RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT-E-SD-------------QFS 111 (671)
Q Consensus 47 rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~-e-~~-------------~f~ 111 (671)
-||...|.++..|++.-- -..|++.++.+..+++.+...+..+-..|..+.+++.. . .. ...
T Consensus 3 ~i~~kl~~~l~~i~~~~~---P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDW---PQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHT---TTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHC---hhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 477888888888875322 23477888888888887655655555888888888764 1 10 122
Q ss_pred hhhhHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005891 112 IEEFIPLLRERMNVLN----PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (671)
Q Consensus 112 L~~fIP~L~e~i~~~n----p~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L 179 (671)
.+.++..+.+.+.... +.....++.++....+..+.+.+.- ..+++.+|+++.++. .|..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 4555566655554322 7888999999998888766665544 448899999995554 588888876
No 158
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.06 E-value=0.2 Score=49.04 Aligned_cols=95 Identities=13% Similarity=0.250 Sum_probs=77.4
Q ss_pred HhchHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHH
Q 005891 150 LGFLPDFLDGLF------------------NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF 211 (671)
Q Consensus 150 i~~Lp~fL~gLf------------------~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~ 211 (671)
.++++.++|.|+ +---|..-|+|++|-+|+..+++.... .+|+..+.+.+..-+.+ ++.
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~--~~~~~~~~~~v~~GL~D-~~D 80 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS--RIDISEFLDRVEAGLKD-EHD 80 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS--SS-HHHHHHHHHHTTSS--HH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHhhcCC-cHH
Confidence 457778888775 334455679999999999999996542 46899999999999998 999
Q ss_pred HHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc
Q 005891 212 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (671)
Q Consensus 212 irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls 247 (671)
||.-|...+..++...|..+.+.+..+++.+-+.++
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988888775
No 159
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.01 E-value=1.1 Score=43.74 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=107.2
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC-cccchHhHHHHHhhhhcCC-cHhHHHHHHHHHHHHHHhcC
Q 005891 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVPYYADILGAILPCISDK-EEKIRVVARETNEELRAIKA 269 (671)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~-l~pflp~LLp~LL~~Lsd~-~~eIR~~A~~~n~~L~~~i~ 269 (671)
.+.++.+..+...++++++..|-.++.-+...++.++.+ +..+-...+..+++.+..+ .+.+++.|..+...++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 356778888888899999999999999999999987544 4467777777888877754 46789999999999888776
Q ss_pred CCCC------CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhc
Q 005891 270 DPAD------GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 329 (671)
Q Consensus 270 ~~~~------~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L 329 (671)
..++ .-.+..++..+.+.+.+ ......++..|..+...+|..+-||..++-..++..+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 5332 12356777777776664 4568899999999999999999999999888777654
No 160
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=11 Score=44.40 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=96.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-----HhchHHHHHHHHHhcCCCChHHHHHHHHHHHH----HHHHhh
Q 005891 117 PLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM-----LGFLPDFLDGLFNMLSDSSHEIRQQADSALWE----FLQEIK 187 (671)
Q Consensus 117 P~L~e~i~~~np~vR~~alswL~~L~~ip~~~l-----i~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~----ll~~I~ 187 (671)
|.|-..+..+|..||..+....-.+-.+-+.|. -..+..=+..|.++|.|+.++||..|...+-+ |=+.|+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 555566678999999999998888877766553 33444445566789999999999876554333 333332
Q ss_pred cCCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHH
Q 005891 188 NSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (671)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~-s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~ 262 (671)
..-+.+++.++..-+. +.-.++|....+-|..++..+ .-.|-+..++|++-+.|.|+...+|.++.+..-
T Consensus 257 ---~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 257 ---PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred ---HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 1223444444444332 234578988888887666533 235568899999999999999999998876543
No 161
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.47 E-value=0.73 Score=49.43 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcC----CcHhHHHHHHHHHHHHHHhcCCCC
Q 005891 197 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD----KEEKIRVVARETNEELRAIKADPA 272 (671)
Q Consensus 197 iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd----~~~eIR~~A~~~n~~L~~~i~~~~ 272 (671)
....++....++|+.++..|+.-+..++...+........++++.++..+.. ++.+....|..+.+.+++.-.--.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 4555566888889999999999999888877655433223555555555543 455677777777777653311000
Q ss_pred CCCChHhHHHHHHHhc------C-CCcHHHHHHHH--HHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC-HHHHHHHHH
Q 005891 273 DGFDVGPILSIATRQL------S-SEWEATRIEAL--HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DEVVLLVLE 342 (671)
Q Consensus 273 ~~~dl~~il~~L~~~L------~-~~~~~tRiaaL--~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s-~eV~~~~l~ 342 (671)
.-|+ ...++.+...+ . ..+.+....++ .|+.-+....-+++..+. ++|.|...+.+.. +.|++.++.
T Consensus 186 ~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 186 VFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHH
Confidence 0012 44555555555 1 22333343333 688888777777776555 9999998887654 778889999
Q ss_pred HHHHHhhcc
Q 005891 343 VHACIAKDL 351 (671)
Q Consensus 343 lLa~Is~~~ 351 (671)
++..+.+..
T Consensus 263 ~l~Nl~~~~ 271 (312)
T PF03224_consen 263 ILRNLLSKA 271 (312)
T ss_dssp HHHHTTSSS
T ss_pred HHHHHHhcc
Confidence 999988543
No 162
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=1.3 Score=47.10 Aligned_cols=146 Identities=18% Similarity=0.100 Sum_probs=109.1
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
.-+...|..+..-++...+.|-..+|-.+..+.+..+..+..-+...+-.|..-.++.+.=||..|..+|...+.-.
T Consensus 125 ~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v--- 201 (334)
T KOG2933|consen 125 PMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV--- 201 (334)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc---
Confidence 34667777777777888889989999888887777776666677777777777778888999999999999888633
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc--CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG--GDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 190 ~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~--~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
.=+.+++.|+.+.++.++.+|..+.--...++.-. .....+|.-++.+.+-.-+.|.-|+.|+.|.-..
T Consensus 202 ---tp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~ 272 (334)
T KOG2933|consen 202 ---TPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVR 272 (334)
T ss_pred ---ChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHH
Confidence 34678888888888889999887655444333322 2234567778888888888888888887775443
No 163
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.33 E-value=0.68 Score=44.98 Aligned_cols=117 Identities=22% Similarity=0.235 Sum_probs=71.8
Q ss_pred chHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHH-------hhcCCC-----C-----------------Ch-----HH
Q 005891 152 FLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQE-------IKNSPS-----V-----------------DY-----GR 196 (671)
Q Consensus 152 ~Lp~fL~gLf~lL-~D~~~eVR~~a~~~L~~ll~~-------I~~~~~-----~-----------------d~-----~~ 196 (671)
-.|++|+-|++++ ++.+.++|.+|.++|+.+-.. +..... . .. .-
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~v 86 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTV 86 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHH
Confidence 3699999999988 556799999998888765320 000000 0 00 11
Q ss_pred HHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 197 MAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 197 iI~iLl~~~~s~d~-~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
.+..++..++++.- .-...++..|..+.+..+....||+|+++|.++..+....+..|+.--.....+...+
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 22333333333211 1122344454455555677779999999999999999777788887666665555543
No 164
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.28 E-value=2.6 Score=41.96 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=45.6
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHH
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAH 94 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~ 94 (671)
++.|+.+..+++..||..|.+.+.-+.+ . ++.+..+.+|.|..|.+|+++.+|+-|.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~--q--GLvnP~~cvp~lIAL~ts~~~~ir~~A~ 66 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILR--Q--GLVNPKQCVPTLIALETSPNPSIRSRAY 66 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh--c--CCCChHHHHhHhhhhhCCCChHHHHHHH
Confidence 3455567789999999999998777764 2 3334559999999999999999999993
No 165
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=23 Score=41.84 Aligned_cols=283 Identities=17% Similarity=0.188 Sum_probs=165.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHH
Q 005891 42 SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLR 120 (671)
Q Consensus 42 ~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~ 120 (671)
+|...-||.-|+-++-.+-+...+-+- ..+=++-...++.|.+-.|-.+| .++..++|-+..+ -.+.+..-+..|.
T Consensus 158 ~~~~~~vkqkaALclL~L~r~spDl~~--~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~~~~~avs~L~ 234 (938)
T KOG1077|consen 158 GSSMDYVKQKAALCLLRLFRKSPDLVN--PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES-YKTCLPLAVSRLS 234 (938)
T ss_pred CcchHHHHHHHHHHHHHHHhcCccccC--hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH-HhhhHHHHHHHHH
Confidence 456677888888888777664322221 11335556788899999888888 5666666633221 0112222222221
Q ss_pred -----------Hhhc--CCCHHHHHHHHHHHHHhhcCCc-hhHHhchHHHHHHHHHhcCCCC--hHHH--HHHHHHHHHH
Q 005891 121 -----------ERMN--VLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSS--HEIR--QQADSALWEF 182 (671)
Q Consensus 121 -----------e~i~--~~np~vR~~alswL~~L~~ip~-~~li~~Lp~fL~gLf~lL~D~~--~eVR--~~a~~~L~~l 182 (671)
+..| .++|-.-..++..+..+ ..|+ ..-..-+.+.++++.+-..++. ++|. .+....|-+.
T Consensus 235 riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFea 313 (938)
T KOG1077|consen 235 RIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (938)
T ss_pred HHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHH
Confidence 1111 35555555555555544 2222 2244556667777766665432 2332 2222223333
Q ss_pred HHHhhcCCCCC-----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc-CCcHhHHHH
Q 005891 183 LQEIKNSPSVD-----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVV 256 (671)
Q Consensus 183 l~~I~~~~~~d-----~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~ 256 (671)
+..+- +.| +..-+..|-+.+.+.+.-+|.-|++-+..++..... ..-+.+=...++..|. +.|-.||+.
T Consensus 314 I~l~~---h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~h~d~Ii~sLkterDvSirrr 388 (938)
T KOG1077|consen 314 ISLAI---HLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKKHQDTIINSLKTERDVSIRRR 388 (938)
T ss_pred HHHHH---HcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHHHHHHHHHHhccccchHHHHH
Confidence 33221 133 455556666677778888898888877666654221 1112333667777777 888889987
Q ss_pred HHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCC-CCHH
Q 005891 257 ARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD-PSDE 335 (671)
Q Consensus 257 A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD-~s~e 335 (671)
|.+. |..+++. -+...|+.-+.+++.+....+|+.-..=.--|++++-.+..=|.+-++. |+.--.| .+++
T Consensus 389 avDL---LY~mcD~----~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLq-Liriagd~vsde 460 (938)
T KOG1077|consen 389 AVDL---LYAMCDV----SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQ-LIRIAGDYVSDE 460 (938)
T ss_pred HHHH---HHHHhch----hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHH-HHHHhcccccHH
Confidence 7654 4444432 2457899999999998888899988888888999998888877776665 4444444 3455
Q ss_pred HHHHHH
Q 005891 336 VVLLVL 341 (671)
Q Consensus 336 V~~~~l 341 (671)
|-...+
T Consensus 461 VW~Rvv 466 (938)
T KOG1077|consen 461 VWYRVV 466 (938)
T ss_pred HHHHhh
Confidence 544333
No 166
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=0.98 Score=49.59 Aligned_cols=127 Identities=17% Similarity=0.279 Sum_probs=91.2
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhh
Q 005891 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIE 113 (671)
Q Consensus 35 ~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~ 113 (671)
.-++.-++..+..||.-|..-+....+....+......++++.+..++.|.+..||.+. .+++.++--...+.-.--..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 34455678999999999988888777763334445677999999999999999999998 67666544333222112356
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH
Q 005891 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (671)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf 161 (671)
.++|.+.-.|....|.+|......+..+..-.+..+..+...+++...
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~ 188 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFK 188 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 777788888888999999999999988776555555555555555444
No 167
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.04 E-value=13 Score=40.26 Aligned_cols=221 Identities=12% Similarity=0.149 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHhhcCc---CcccchHhHHHHHhhhhcCCcHhHHHHHH-HHHHHHHHhcCCC-CCCCC--hHhHHHHH
Q 005891 212 TRLTAITWINEFVKLGGD---QLVPYYADILGAILPCISDKEEKIRVVAR-ETNEELRAIKADP-ADGFD--VGPILSIA 284 (671)
Q Consensus 212 irl~al~WI~~~~~l~~~---~l~pflp~LLp~LL~~Lsd~~~eIR~~A~-~~n~~L~~~i~~~-~~~~d--l~~il~~L 284 (671)
+|.+.+..+..+++-.++ ..-.+.|.++..++.--..+.|+.|+.-. .+...+.+-.++. .+.++ ++.+.+..
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 445555555555554331 12235777777777666656666554321 2222333222220 11110 12333323
Q ss_pred HHhcC---CCcHHHHHHHHHHHHHHHhhChhhHhhh----hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-----c--
Q 005891 285 TRQLS---SEWEATRIEALHWISTLLNRHRTEVLHF----LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-----D-- 350 (671)
Q Consensus 285 ~~~L~---~~~~~tRiaaL~WL~~L~~~~p~~i~~~----l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-----~-- 350 (671)
..... .+-.+.|..-...+..+.+.|++.+... ...++..++-++.++..+|...++.++..+.+ +
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 33332 2346789999999999999999988755 44566777777899999999999998877662 1
Q ss_pred ------cchHHHHHHHHHhhc-cccchhhhhHHHHHHHHHhcc---------------CChHHHHHHHHHhhccc---CC
Q 005891 351 ------LQHFRQLVVFLVHNF-RVDNSLLEKRGALIIRRLCVL---------------LDAERVYRELSTILEGE---AD 405 (671)
Q Consensus 351 ------~~~F~~fm~~LL~lf-~~d~~lLe~Rg~~IIR~Lc~~---------------L~~E~Iy~~la~iL~~~---~d 405 (671)
+.||-.++...+... .++++--=+--..++++|... -|.+-+...+++.|.+. -+
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~ 282 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLS 282 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCC
Confidence 133344444444433 333332222224577777743 23456667777777653 22
Q ss_pred hhHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 005891 406 LDFACTMVQALNLILLTSSELSELRDLLKK 435 (671)
Q Consensus 406 l~F~~~mVq~Ln~iLLTs~El~~lR~~L~~ 435 (671)
..-+..+|+.|-. ...+..+||..||+
T Consensus 283 ~~qi~~fv~~Lf~---~~~d~~~Fk~~lrD 309 (319)
T PF08767_consen 283 PKQIENFVQGLFE---LNNDPEKFKTHLRD 309 (319)
T ss_dssp HHHHHHHHHHHHH---TTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hcCCHHHHHHHHHH
Confidence 2223333333221 23357788888887
No 168
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.90 E-value=16 Score=39.50 Aligned_cols=128 Identities=15% Similarity=0.194 Sum_probs=80.2
Q ss_pred HhhcCCchhHHhchHHHHHHHH----HhcCC---CChHHHHHHHHHHHHHHHHhhc----CCCCChHHHHHHHHHhcCCC
Q 005891 140 VLDSVPDIDMLGFLPDFLDGLF----NMLSD---SSHEIRQQADSALWEFLQEIKN----SPSVDYGRMAEILVQRAASP 208 (671)
Q Consensus 140 ~L~~ip~~~li~~Lp~fL~gLf----~lL~D---~~~eVR~~a~~~L~~ll~~I~~----~~~~d~~~iI~iLl~~~~s~ 208 (671)
.+....+..+.+++|.+++.+| .|+.+ ..||.|..--+.|..+.+..-. -|.-.+..++..++..++++
T Consensus 98 ~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~ 177 (319)
T PF08767_consen 98 TIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT 177 (319)
T ss_dssp HHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 3333333345566677666665 66655 4689998877777777665321 11224788999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCc---C----c-ccchHhHHHHHhhhhcCCc--HhHHHHHHHHHHHHHHhc
Q 005891 209 DEFTRLTAITWINEFVKLGGD---Q----L-VPYYADILGAILPCISDKE--EKIRVVARETNEELRAIK 268 (671)
Q Consensus 209 d~~irl~al~WI~~~~~l~~~---~----l-~pflp~LLp~LL~~Lsd~~--~eIR~~A~~~n~~L~~~i 268 (671)
+.+|...++..+.++++-... . + ..|.=.++.-++..+.|+. ...+..+ .....+...+
T Consensus 178 ~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~-~iL~~Lf~~v 246 (319)
T PF08767_consen 178 NREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQS-QILSNLFRLV 246 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHH-HHHHHHHHHH
Confidence 999999999988887765322 1 1 2345556667777777664 3344433 3444555443
No 169
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.89 E-value=15 Score=41.44 Aligned_cols=219 Identities=13% Similarity=0.198 Sum_probs=103.3
Q ss_pred hHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh----cCC-chHHHHHH-HHHHHH
Q 005891 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS----ADS-DANVQSAA-HLLDRL 99 (671)
Q Consensus 26 ~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~----~D~-d~~Vr~gA-~~Ldrl 99 (671)
+.++.+.++..++..+.-++..=-.|...++..+.-.+++.+.++...+++.|...+ .++ +|.----. |.+..+
T Consensus 20 i~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~l 99 (435)
T PF03378_consen 20 IQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGAL 99 (435)
T ss_dssp TTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Confidence 345566666666666643333223444555555555555555555555555554322 222 22221112 445555
Q ss_pred HHHhhcccch----hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-CchhHHhchHHHHHHHH-HhcCCCChHHHH
Q 005891 100 VKDIVTESDQ----FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLF-NMLSDSSHEIRQ 173 (671)
Q Consensus 100 lKdIv~e~~~----f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~i-p~~~li~~Lp~fL~gLf-~lL~D~~~eVR~ 173 (671)
++ .+.+.+. .--+.++|.+..-+...-.+.--++.+.+..+... ++.++-+..-.+++.|. -.+++....| -
T Consensus 100 ir-~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-P 177 (435)
T PF03378_consen 100 IR-FVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-P 177 (435)
T ss_dssp HH-HS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-H
T ss_pred HH-hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-C
Confidence 55 2222111 11345556665555432222222233334433322 21233333333333333 3455555555 3
Q ss_pred HHHHHHHHHHHHhhcCC--CCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcC-cCcccchHhHHHHHhhhhcCC
Q 005891 174 QADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGG-DQLVPYYADILGAILPCISDK 249 (671)
Q Consensus 174 ~a~~~L~~ll~~I~~~~--~~d~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l~~-~~l~pflp~LLp~LL~~Lsd~ 249 (671)
+....|..+++.-.... .-+++.+..+.-..+.++ ++.. +...+..++...| +.+-||++.++..++.-+..+
T Consensus 178 alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~---gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 178 ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHY---GFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH---HHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 33455666665443221 124677777777777766 3333 3445555555544 468999999999999988744
No 170
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=1 Score=52.73 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=54.5
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
....-|.+|...++|++.+|||.++-.+..+--.....+-+-...|-+.+.+.++|-+.|+-..--.+|.+=+-+.
T Consensus 621 G~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGilda 696 (929)
T KOG2062|consen 621 GLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGILDA 696 (929)
T ss_pred CcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhc
Confidence 4566678888888999999999999888876554455666777888888888999988776544333444433333
No 171
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.26 E-value=22 Score=39.43 Aligned_cols=231 Identities=18% Similarity=0.175 Sum_probs=150.1
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hh-H-HhchHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHH
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-ID-M-LGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQ 184 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~-~~-l-i~~Lp~fL~gLf~lL~D~-~~eVR~~a~~~L~~ll~ 184 (671)
+..+..|++.++..+.+.+..||..+.-.+..+..-+. .. + ..+++.|+-- .+-.|. +..=|.+|-+....|++
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~--SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIR--SLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHh--hhcccCCChHHHHHHHHHHHHHHH
Confidence 44567788888877777779999999999976655432 22 1 1244444331 233454 34567888888888876
Q ss_pred HhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHH
Q 005891 185 EIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (671)
Q Consensus 185 ~I~~~~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~ 263 (671)
.- +.+ .+ -..++..++....++++..|..|++.+.|++-..|+-+ +-.+-+..++..+.|...+ .+..+...
T Consensus 98 ~~-~~~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv--~~~gG~~~L~~~l~d~~~~---~~~~l~~~ 170 (371)
T PF14664_consen 98 IK-KGP-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELV--AECGGIRVLLRALIDGSFS---ISESLLDT 170 (371)
T ss_pred hc-CCc-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH--HHcCCHHHHHHHHHhccHh---HHHHHHHH
Confidence 32 111 12 36788899999999999999999999988887666433 2344456777777775444 44445556
Q ss_pred HHHhcCCCC------CCCChHhHHHHHHHh----cCCCcHHHHH-HHHHHHHHHHhhChhhHh-hhhh-HHHHHHHHhcC
Q 005891 264 LRAIKADPA------DGFDVGPILSIATRQ----LSSEWEATRI-EALHWISTLLNRHRTEVL-HFLN-DIFDTLLKALS 330 (671)
Q Consensus 264 L~~~i~~~~------~~~dl~~il~~L~~~----L~~~~~~tRi-aaL~WL~~L~~~~p~~i~-~~l~-~l~p~LL~~Ls 330 (671)
++.....+. .+.|++.++...++. ..++.+..|. ++-..+..+.+.-++=+. ...+ +-+..|+.+|.
T Consensus 171 lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~ 250 (371)
T PF14664_consen 171 LLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLR 250 (371)
T ss_pred HHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHc
Confidence 666665542 356788888777776 2222222243 344556666665544331 2222 56788999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 005891 331 DPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 331 D~s~eV~~~~l~lLa~Is 348 (671)
-|.+++|...+.++-.+-
T Consensus 251 ~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 251 LPNPEIRKAILDLLFDLL 268 (371)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999887765
No 172
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=3.1 Score=44.46 Aligned_cols=123 Identities=21% Similarity=0.251 Sum_probs=94.4
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----cc
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----LQ 352 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~-----~~ 352 (671)
+..+......|.+++|...+.+|..+..|.+..++.+.+.+.+++.++++.++.+...|-..+|.+++.|-+. ++
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888999999999999999999999999999999999999999999999999999999999998842 22
Q ss_pred hHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005891 353 HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (671)
Q Consensus 353 ~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (671)
..+..+..|+..=..|++.+-+-+.-..+-+-....|-++-+.+..++
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~ 214 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPIL 214 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 445555555555556666665544555555555555555555555544
No 173
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=13 Score=40.55 Aligned_cols=182 Identities=19% Similarity=0.139 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHh
Q 005891 3 KWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKL 81 (671)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i-l~~f~eIf~~L~kL 81 (671)
+||+..+.-..|--....+.|..+...+.. +|.....-...+.+=|..|.+-+...+....... +.-+ .-+..+..+
T Consensus 55 k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~-~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~-ggl~~ll~~ 132 (342)
T KOG2160|consen 55 KWLQELMQAHTEDQKDFVEDMKVISDVMSM-IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISL-GGLVPLLGY 132 (342)
T ss_pred HHHHHHHHHhhhhhhhhcccchhHHHHHHh-hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhc-cCHHHHHHH
Confidence 566665555544434555555555555555 3333333334466677777766666665443211 1111 334445558
Q ss_pred hcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhc--CCchhHHhchHHHH
Q 005891 82 SADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDS--VPDIDMLGFLPDFL 157 (671)
Q Consensus 82 ~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~--ip~~~li~~Lp~fL 157 (671)
+.++++++|..| ..+...+.-...-...+-=..+.+.|...+.. .+-.+|..++-.|+.+.- .|+.+-..-++. +
T Consensus 133 l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~ 211 (342)
T KOG2160|consen 133 LENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-Y 211 (342)
T ss_pred hcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-H
Confidence 899999999988 44444332111000011111245566655554 555888989888887643 455444333444 6
Q ss_pred HHHHHhcCCCChHHH--HHHHHHHHHHHHHhh
Q 005891 158 DGLFNMLSDSSHEIR--QQADSALWEFLQEIK 187 (671)
Q Consensus 158 ~gLf~lL~D~~~eVR--~~a~~~L~~ll~~I~ 187 (671)
.+|...+.+++.+|| ..|...+..++++-+
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 778888888655554 556677888887654
No 174
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.93 E-value=1.8 Score=50.41 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=120.2
Q ss_pred HHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhcC
Q 005891 195 GRMAEILVQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKA 269 (671)
Q Consensus 195 ~~iI~iLl~~~~s----~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~ 269 (671)
.++.|+..+-|.+ .|+.++++|---+..+.-+.. .|..+=+|.+...|+ .++|.||.-|.-..+.+.-.+.
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~----~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSF----EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 4566677666655 689999998888887777654 256777788888888 8899999655443333221110
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
--.++.-+.|-+.+.+++..+|-.|+.-+..|.-.-.-++. +-++.+..+|.|++.++-..+--.+-+|++
T Consensus 967 -----~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVK----Gqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 967 -----TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVK----GQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred -----hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeec----cchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 01356667888899999999999999888777655444433 445667789999999999888888888884
Q ss_pred cc-chHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005891 350 DL-QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (671)
Q Consensus 350 ~~-~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (671)
.+ .-+..|+.-. .-++.+...-++--..|||-|-....-||=-+.+++-|
T Consensus 1038 KdNt~yn~fidif-s~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~L 1088 (1128)
T COG5098 1038 KDNTMYNGFIDIF-STLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKESL 1088 (1128)
T ss_pred cccchhhhhHHHH-HHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2222222111 11121211112212346666666665555444444433
No 175
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=34 Score=40.73 Aligned_cols=383 Identities=16% Similarity=0.175 Sum_probs=191.5
Q ss_pred HHhHhh-hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhh
Q 005891 27 ETILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (671)
Q Consensus 27 ~~yl~~-Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv 104 (671)
+.-+++ |++-|+..|+++---.|.-||+-+..+..-.+...+ .-++++...+++.|++.-|+--| -++..++.+--
T Consensus 454 an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~i--ll~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q 531 (970)
T COG5656 454 ANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGI--LLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ 531 (970)
T ss_pred HHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh
Confidence 344444 668889999999999999999998888544554333 34888998999988887776555 56666655331
Q ss_pred cccchhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHH--------hc---CCC--ChH
Q 005891 105 TESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN--------ML---SDS--SHE 170 (671)
Q Consensus 105 ~e~~~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~--------lL---~D~--~~e 170 (671)
..-.+..-+|...+.+-. .|.+----+-+.+..+.+--..++.+|=|++...|.+ .+ +|+ ..|
T Consensus 532 ---~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vD 608 (970)
T COG5656 532 ---SHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVD 608 (970)
T ss_pred ---hhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCcccccccc
Confidence 112244555555554432 2222112222333344444445666666666555532 11 111 122
Q ss_pred HHHHHHHHH-H---HHHHHhhcCCCC------ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHH
Q 005891 171 IRQQADSAL-W---EFLQEIKNSPSV------DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILG 240 (671)
Q Consensus 171 VR~~a~~~L-~---~ll~~I~~~~~~------d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp 240 (671)
=++.|...+ . .++-.+.+.|.+ .+-++++.++.+-. ...=.+|++.+....= ...++.|-.+++..
T Consensus 609 DKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i---~dfy~Ea~dildg~tf-~skeI~pimwgi~E 684 (970)
T COG5656 609 DKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEI---SDFYQEALDILDGYTF-MSKEIEPIMWGIFE 684 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHhhhhH-HHHHhhhhhhHHHH
Confidence 223322211 1 111111111111 12233333333221 2223345554433221 22345567788888
Q ss_pred HHhhhhcCCcH-hHHHHHHHHHHHHHHhcC-CCCCCCChH-hHHHHHHHhcCCCcH--HHHHHHHHHHHHHHhhChhhHh
Q 005891 241 AILPCISDKEE-KIRVVARETNEELRAIKA-DPADGFDVG-PILSIATRQLSSEWE--ATRIEALHWISTLLNRHRTEVL 315 (671)
Q Consensus 241 ~LL~~Lsd~~~-eIR~~A~~~n~~L~~~i~-~~~~~~dl~-~il~~L~~~L~~~~~--~tRiaaL~WL~~L~~~~p~~i~ 315 (671)
.+..++-++.. +--+.+..+.+.+.-..+ +..++-.|. .++++....+.++.- ..++.+.+-+..+.-...+++.
T Consensus 685 ll~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll 764 (970)
T COG5656 685 LLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELL 764 (970)
T ss_pred HHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhH
Confidence 88888877663 333333334444433322 112233454 445666677765543 6688888777766666655443
Q ss_pred -hhhhHHHHHHHH---hcCCCCHHHHHHHHHHH-HH----------HhhccchHHHHHHHHHhhccccchhhhhHH-HHH
Q 005891 316 -HFLNDIFDTLLK---ALSDPSDEVVLLVLEVH-AC----------IAKDLQHFRQLVVFLVHNFRVDNSLLEKRG-ALI 379 (671)
Q Consensus 316 -~~l~~l~p~LL~---~LsD~s~eV~~~~l~lL-a~----------Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg-~~I 379 (671)
+|.+ +|-...+ ++.|+.+--+-.++++. +. |-++++|...|.+....-..+=.+.-..+- -+.
T Consensus 765 ~qy~p-lfi~vags~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ipkfkrvhdkKLsvla 843 (970)
T COG5656 765 SQYLP-LFISVAGSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQIPKFKRVHDKKLSVLA 843 (970)
T ss_pred HhhhH-HHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhcCcchhhhhhhHhHHHH
Confidence 3444 3333322 34565542222334332 22 224677777777776554322222212221 223
Q ss_pred HHHHhccC----ChHHHHHHHHHhhcccCChhHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 005891 380 IRRLCVLL----DAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (671)
Q Consensus 380 IR~Lc~~L----~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~ 435 (671)
|-.+|... ++|.....+++ .||++.+ +=||.-..|.+-++
T Consensus 844 Iltii~l~~v~~~~e~lv~nLg~------------vlv~l~~----sLPeAir~rake~d 887 (970)
T COG5656 844 ILTIIRLQEVGALPELLVHNLGE------------VLVALVT----SLPEAIRLRAKEKD 887 (970)
T ss_pred HHHHHHhcccccchhhhhhHHHH------------HHHHHHH----hhHHHHHHHHhhcc
Confidence 44444433 44555555554 3355443 34888888885544
No 176
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=3.5 Score=48.53 Aligned_cols=160 Identities=21% Similarity=0.150 Sum_probs=104.5
Q ss_pred HHHHHH-HhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCchhHHh
Q 005891 74 IFDALC-KLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (671)
Q Consensus 74 If~~L~-kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~-i~~~np~vR~~alswL~~L~~ip~~~li~ 151 (671)
-++.+. ++..|.||-.|.++. -++.-..+... =++.|-.|+.. +.|.|.+||..++-.|..+..-.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm--~t~alAy~GTg----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d------ 586 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGM--YTLALAYVGTG----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD------ 586 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhH--HHHHHHHhccC----chhhHHHhhcccccccchHHHHHHHHHheeeEecC------
Confidence 344444 455666666665551 11222223211 12334444443 67889999999999998765433
Q ss_pred chHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 005891 152 FLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (671)
Q Consensus 152 ~Lp~fL~gLf~lL~D~-~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~ 230 (671)
|+-+++...+|+++ |+-||-.|.-+|+-+|..-|. ..-|..|--.+.++..++|.-|+-.+.-+.-...+.
T Consensus 587 --p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 587 --PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred --hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 33344444588886 789999999999999875542 445555555667888999999988777666556667
Q ss_pred cccchHhHHHHHhhhhcCCcHhH
Q 005891 231 LVPYYADILGAILPCISDKEEKI 253 (671)
Q Consensus 231 l~pflp~LLp~LL~~Lsd~~~eI 253 (671)
+.|-...+-..+.+-+.+.+++.
T Consensus 659 ~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 659 LCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred cCchHHHHHHHHHHHhhhhhhHH
Confidence 77878888888888888776553
No 177
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.52 E-value=5.3 Score=41.88 Aligned_cols=194 Identities=18% Similarity=0.221 Sum_probs=116.9
Q ss_pred hhhHHHHHhccCCC--CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHH-Hhhcc
Q 005891 31 QQIVPPVLNSFSDQ--DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK-DIVTE 106 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~--d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllK-dIv~e 106 (671)
.+-+|.+...++|. ++.||.-|+|++.++. .+++.+.+-|+.+|+-..|+.-- .++.++=- +++..
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 34678887777765 6899999999998874 45778888898999999998843 33444211 12111
Q ss_pred ---cc-------hhh-hhhhHHHHHHhhcCC-CH-HHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHH
Q 005891 107 ---SD-------QFS-IEEFIPLLRERMNVL-NP-YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ 173 (671)
Q Consensus 107 ---~~-------~f~-L~~fIP~L~e~i~~~-np-~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~ 173 (671)
++ +-+ -..=++-+++-+.+. .| +-|+.+.-.+.+ +-+.+ - +-.+..-+.|.++-.|.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn---~g~Ee---a----I~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRN---IGTEE---A----INALIDGLADDSALFRH 205 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhc---cCcHH---H----HHHHHHhcccchHHHHH
Confidence 10 000 111134444444332 22 333333333322 11111 1 23344467788888998
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhH
Q 005891 174 QADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI 253 (671)
Q Consensus 174 ~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eI 253 (671)
.+.-+++++-... .++.++..|..... ++-+|-+|.+.+..+. -++.++++...+.|.++-|
T Consensus 206 EvAfVfGQl~s~~------ai~~L~k~L~d~~E--~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~~vv 267 (289)
T KOG0567|consen 206 EVAFVFGQLQSPA------AIPSLIKVLLDETE--HPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEERVV 267 (289)
T ss_pred HHHHHHhhccchh------hhHHHHHHHHhhhc--chHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcHHHH
Confidence 8888777765421 24445555544333 5679999998886432 3677888888999999999
Q ss_pred HHHHHHHHH
Q 005891 254 RVVARETNE 262 (671)
Q Consensus 254 R~~A~~~n~ 262 (671)
|+.+.-+.+
T Consensus 268 ~esc~vald 276 (289)
T KOG0567|consen 268 RESCEVALD 276 (289)
T ss_pred HHHHHHHHH
Confidence 988876654
No 178
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=1.3 Score=50.38 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=71.9
Q ss_pred hHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-hhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 33 IVPPVLNS-FSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 33 Ii~pvL~~-l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~k-L~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
++..+|.. .+|.+..||.+|.-|+.-++ +++. ..++.-.. +..+.+++||-|. -+|.-.|. .
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc--~~D~------~~lv~tvelLs~shN~hVR~g~AvaLGiaca-------g 616 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVC--CDDR------DLLVGTVELLSESHNFHVRAGVAVALGIACA-------G 616 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeE--ecCc------chhhHHHHHhhhccchhhhhhhHHHhhhhhc-------C
Confidence 45555554 56666666666544433322 1111 11222222 2334455666554 22222111 1
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChH
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHE 170 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~e 170 (671)
.....-+..|...++|++.+|||.++-.+..+.-....++.+..-.+...+-+.+.|.+.+
T Consensus 617 ~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 617 TGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred CccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh
Confidence 2345567788888999999999999988887766666677777777777777777776654
No 179
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=91.40 E-value=29 Score=39.17 Aligned_cols=312 Identities=15% Similarity=0.144 Sum_probs=159.7
Q ss_pred hHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhcchhhhhH-------HHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHh
Q 005891 33 IVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFF-------NQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (671)
Q Consensus 33 Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~~~~il~~f-------~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdI 103 (671)
.+..++.+++ .....+..|...-++.+......- ..+| ++.+..+..++...|.-+...| ..|..++..-
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~-~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTR-VKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHH-HHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 3444444443 234556666666655554332211 1111 2345556666665566555555 6666654311
Q ss_pred hcccchhhhhhhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHH--HHHHHH
Q 005891 104 VTESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQ--ADSALW 180 (671)
Q Consensus 104 v~e~~~f~L~~fIP~L~e~i~~~-np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~--a~~~L~ 180 (671)
........++.+...+.+.+... +......++.++..+...++--..-.=...++.|...+.-....+... +.-|+=
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 11112234555667777776653 467788888888888777653321111114455555553222122222 222211
Q ss_pred --HHHHHhhcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcC--cccchHhHHH----HHhhhhc---C
Q 005891 181 --EFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQ--LVPYYADILG----AILPCIS---D 248 (671)
Q Consensus 181 --~ll~~I~~~~~~d~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l~~~~--l~pflp~LLp----~LL~~Ls---d 248 (671)
.|-..... ...-.++|+.+++.++.. .|-+=+-++..+.+++...... -..+.+.++. .++..|. .
T Consensus 213 lLSF~~~~~~--~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 213 LLTFNPHAAE--VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHhccHHHHH--hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 11111100 011245777777766543 3333334666677777653111 0112233332 2333443 4
Q ss_pred CcHhHHHHHHHHHHHHHHhcCC-------------------C---CCC--------C--ChHhHHHHHHHhcC-CCcHHH
Q 005891 249 KEEKIRVVARETNEELRAIKAD-------------------P---ADG--------F--DVGPILSIATRQLS-SEWEAT 295 (671)
Q Consensus 249 ~~~eIR~~A~~~n~~L~~~i~~-------------------~---~~~--------~--dl~~il~~L~~~L~-~~~~~t 295 (671)
+|+|+.+.-....+.|-+.+.+ + .+. + +=-+++..|.+.+. +.+..+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 6777766554444333322211 0 011 0 11467777888874 333444
Q ss_pred HHHHHHHHHHHHhhChhh--HhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 296 RIEALHWISTLLNRHRTE--VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 296 RiaaL~WL~~L~~~~p~~--i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
-.-|..=++++.+..|.+ +...+. .=..+++.+++++++|+..|+.++.++-
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 455567899999998765 333222 4556888899999999999999988774
No 180
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=91.18 E-value=15 Score=41.45 Aligned_cols=221 Identities=8% Similarity=0.133 Sum_probs=124.0
Q ss_pred CCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCC----hHHHHHHHHHhcCCC-CHHHHHHHHH
Q 005891 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD----YGRMAEILVQRAASP-DEFTRLTAIT 218 (671)
Q Consensus 144 ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d----~~~iI~iLl~~~~s~-d~~irl~al~ 218 (671)
....++.++.+.++..||+.+.-+...=-.-..+|+-+.+...+...... ++.++.++..-+.+| ++..-....+
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 34567889999999999988743221101112344445555444322122 355556665556665 5666666666
Q ss_pred HHHHHHhhc----CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC---CC
Q 005891 219 WINEFVKLG----GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS---SE 291 (671)
Q Consensus 219 WI~~~~~l~----~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~---~~ 291 (671)
-|..++... +..+..|-+.++|.+...+..+..|.-.-+-+....+++.-...+-.-.|.++++.+..-.. ..
T Consensus 95 si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g 174 (435)
T PF03378_consen 95 SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG 174 (435)
T ss_dssp HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC
Confidence 666666653 33344577888888888777655444433444555555554411111236666666553321 12
Q ss_pred cHHHHHHHHHHHHHHHhhChhhHh--hhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHh
Q 005891 292 WEATRIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVH 363 (671)
Q Consensus 292 ~~~tRiaaL~WL~~L~~~~p~~i~--~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~------~~~~F~~fm~~LL~ 363 (671)
+.+ +...-|.++..+.|..+. +++..++...-+.++.+..+ ..+..+|..|-. =++|++.++.-+++
T Consensus 175 niP---alvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~ 249 (435)
T PF03378_consen 175 NIP---ALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLT 249 (435)
T ss_dssp THH---HHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHH
T ss_pred CcC---cHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 222 333467777888888875 67888888777888777644 336666666652 26799999999999
Q ss_pred hccccc
Q 005891 364 NFRVDN 369 (671)
Q Consensus 364 lf~~d~ 369 (671)
++.+.+
T Consensus 250 RLq~sk 255 (435)
T PF03378_consen 250 RLQSSK 255 (435)
T ss_dssp HHHHC-
T ss_pred HHhhCC
Confidence 997653
No 181
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.92 E-value=5.7 Score=46.59 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=95.7
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhcchh-----hhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-----IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 35 ~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i-----l~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
|.+.+++.-+++.||.-|++-+.+.--...+.. =.....=|..+.+++.|+-+.||+-| ..+.+.....=.-.+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 566899999999999999998887643222111 12234456778899999999999998 554443221100011
Q ss_pred hhhhhhhHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005891 109 QFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i-~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~ 180 (671)
...+..++..+..-+ .+....||......|..+...|- -.+.+..+|+.|--.|.|....||.++...|-
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHHHHH
Confidence 223444444444333 46777999999999998877764 23345555777777899999999999765443
No 182
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.90 E-value=4.8 Score=45.09 Aligned_cols=220 Identities=17% Similarity=0.211 Sum_probs=110.1
Q ss_pred hHh-hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhh
Q 005891 29 ILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIV 104 (671)
Q Consensus 29 yl~-~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~---~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv 104 (671)
|++ ..+..++..|.-+|+|-|.+..+.+.+|-.... ..+. ..+-..+.+.+.+++.. +|...+=.++..|+
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir---~~i~~~~~~fi~e~~~~--~gI~elLeil~sii 203 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR---KSINNIFYRFIYETERH--NGIAELLEILGSII 203 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH---HHHHHHHHHHHHTTS----STHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHhcCcccc--cCHHHHHHHHHHHH
Confidence 554 578889999999999999999999999754322 2332 33444444555444332 23322222233343
Q ss_pred ccc--------chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHH
Q 005891 105 TES--------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQAD 176 (671)
Q Consensus 105 ~e~--------~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~ 176 (671)
..- ..|-...++|+...... +..-+-+..++..+.+--+ .....++.|+++.= |..+..+.+
T Consensus 204 ~gf~~plk~eh~~fl~~vllPLh~~~~~---~~y~~~L~~~~~~f~~kdp----~l~~~~i~~llk~W--P~t~s~Kev- 273 (409)
T PF01603_consen 204 NGFAVPLKEEHKQFLRKVLLPLHKSPHL---SSYHQQLSYCVVQFLEKDP----SLAEPVIKGLLKHW--PKTNSQKEV- 273 (409)
T ss_dssp TT--SS--HHHHHHHHHTTGGGGGSTGG---GGTHHHHHHHHHHHHHH-G----GGHHHHHHHHHHHS---SS-HHHHH-
T ss_pred hccCCCCcHHHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHHhC--CCCCchhHH-
Confidence 311 12223334444322111 1222334444444332111 23344555555433 112222222
Q ss_pred HHHHHHHHHhhcCCCCCh----HHHHHHHHHhcCCCCHHHHHHHHH-HHHHH-HhhcCcCcccchHhHHHHHhhhhc---
Q 005891 177 SALWEFLQEIKNSPSVDY----GRMAEILVQRAASPDEFTRLTAIT-WINEF-VKLGGDQLVPYYADILGAILPCIS--- 247 (671)
Q Consensus 177 ~~L~~ll~~I~~~~~~d~----~~iI~iLl~~~~s~d~~irl~al~-WI~~~-~~l~~~~l~pflp~LLp~LL~~Ls--- 247 (671)
-.|+.+-+.+...+..++ ..+...+-.|+.+++..|...|+. |-.+. +.+. ..+-..++|.+.+.+.
T Consensus 274 ~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li----~~~~~~i~p~i~~~L~~~~ 349 (409)
T PF01603_consen 274 LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI----SQNSRVILPIIFPALYRNS 349 (409)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH----HCTHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH----HhChHHHHHHHHHHHHHHH
Confidence 122233222221111223 445667778899999999999887 65542 3332 2234445555555443
Q ss_pred --CCcHhHHHHHHHHHHHHHHh
Q 005891 248 --DKEEKIRVVARETNEELRAI 267 (671)
Q Consensus 248 --d~~~eIR~~A~~~n~~L~~~ 267 (671)
+=+..||..|..+...+++.
T Consensus 350 ~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 350 KNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp SS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 33688999999998888764
No 183
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=48 Score=40.26 Aligned_cols=178 Identities=10% Similarity=0.094 Sum_probs=110.7
Q ss_pred chhhhhhhHHHHHHhhcCC--CHHHHHHHHHHHHHh---hcCCchhHHhchHHHHHHHHHh-cCCCChHHHHHHHHHHHH
Q 005891 108 DQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVL---DSVPDIDMLGFLPDFLDGLFNM-LSDSSHEIRQQADSALWE 181 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~--np~vR~~alswL~~L---~~ip~~~li~~Lp~fL~gLf~l-L~D~~~eVR~~a~~~L~~ 181 (671)
|+.-++.++..+-+.+.+. +|+.-.-.=.++..+ +.-.+....+.+|..++..+.. ++-++++.-+.+...++.
T Consensus 456 gd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs 535 (982)
T KOG2022|consen 456 GDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGS 535 (982)
T ss_pred hHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHH
Confidence 3566777888888888763 444333222333333 3334444555666666655421 234467766677788999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc--CCcHhHHHHHHH
Q 005891 182 FLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS--DKEEKIRVVARE 259 (671)
Q Consensus 182 ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls--d~~~eIR~~A~~ 259 (671)
+..-++++| ..+..-+|.+++.++.++..++. ..-+.++++-++.++.||...++.+.-..+- ...+..|....+
T Consensus 536 ~s~~l~e~P-~~ln~sl~~L~~~Lh~sk~s~q~--i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~ 612 (982)
T KOG2022|consen 536 LSNWLGEHP-MYLNPSLPLLFQGLHNSKESEQA--ISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMK 612 (982)
T ss_pred HHHHHhcCC-cccCchHHHHHHHhcCchHHHHH--HHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHH
Confidence 988887655 45777889999988766555443 3448999999999999999999987665443 223456666777
Q ss_pred HHHHHHHhcCCCCC-CCChHhHHHHHHHhcC
Q 005891 260 TNEELRAIKADPAD-GFDVGPILSIATRQLS 289 (671)
Q Consensus 260 ~n~~L~~~i~~~~~-~~dl~~il~~L~~~L~ 289 (671)
+.+.++....- .+ .-.+..+++-+..++.
T Consensus 613 sIGyvls~~~p-Ee~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 613 SIGYVLSRLKP-EEIPKYLMKLINPILSQLE 642 (982)
T ss_pred HHHHHHHhccH-HhHHHHHHHHHHHHHHHHH
Confidence 77776655441 11 1123455555554443
No 184
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.54 E-value=7 Score=45.80 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCC----------CCChHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHhhcCcCcc
Q 005891 167 SSHEIRQQADSALWEFLQEIKNSP----------SVDYGRMAEILVQRAA----SPDEFTRLTAITWINEFVKLGGDQLV 232 (671)
Q Consensus 167 ~~~eVR~~a~~~L~~ll~~I~~~~----------~~d~~~iI~iLl~~~~----s~d~~irl~al~WI~~~~~l~~~~l~ 232 (671)
.++.+|..|.-+++.++...-... ....+.+++.+...+. ..++.-+..++..|+++-
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-------- 518 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-------- 518 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC--------
Confidence 457899999988998888664431 1124455555555444 456677777777776542
Q ss_pred cchHhHHHHHhhhhcCC---cHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHH
Q 005891 233 PYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWISTLL 307 (671)
Q Consensus 233 pflp~LLp~LL~~Lsd~---~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~--~~~~tRiaaL~WL~~L~ 307 (671)
.|..++.+.+.+.+. ...+|.+|..+...+... .-+.+.+++..-+.+ ++.+.|++|+.-|.
T Consensus 519 --~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~--------~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm--- 585 (618)
T PF01347_consen 519 --HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH--------CPEKVREILLPIFMNTTEDPEVRIAAYLILM--- 585 (618)
T ss_dssp ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH---
T ss_pred --CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc--------CcHHHHHHHHHHhcCCCCChhHHHHHHHHHH---
Confidence 467888888887766 578898887775433211 234667777777653 45779999975443
Q ss_pred hhChhhHhhhhhHHHHHHHHhc-CCCCHHHHHHHHH
Q 005891 308 NRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLE 342 (671)
Q Consensus 308 ~~~p~~i~~~l~~l~p~LL~~L-sD~s~eV~~~~l~ 342 (671)
+..|..-. +..+ ...+ .|++++|..-+..
T Consensus 586 ~~~P~~~~--l~~i----~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 586 RCNPSPSV--LQRI----AQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp HT---HHH--HHHH----HHHHTT-S-HHHHHHHHH
T ss_pred hcCCCHHH--HHHH----HHHHhhCchHHHHHHHHH
Confidence 33344321 2223 2333 5778888764443
No 185
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.48 E-value=1 Score=49.29 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=55.8
Q ss_pred hhHHhHhhhHHHHHhcc----------CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCch--HHHHH
Q 005891 25 YSETILQQIVPPVLNSF----------SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA--NVQSA 92 (671)
Q Consensus 25 ~~~~yl~~Ii~pvL~~l----------~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~--~Vr~g 92 (671)
.+++|+..++|+++.|+ .|..|..|.+|+..+..|++.....--.--+.|+..|.+.+.|+.. ...-|
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 34789999999999999 6778999999999999999876543222246788889988877654 33667
Q ss_pred H-HHHHH
Q 005891 93 A-HLLDR 98 (671)
Q Consensus 93 A-~~Ldr 98 (671)
| ..|..
T Consensus 331 Ai~GL~~ 337 (343)
T cd08050 331 AIVGLSA 337 (343)
T ss_pred HHHHHHH
Confidence 7 44443
No 186
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.47 E-value=2.1 Score=37.80 Aligned_cols=87 Identities=21% Similarity=0.266 Sum_probs=70.9
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHH
Q 005891 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLV 358 (671)
Q Consensus 279 ~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~fm 358 (671)
+..+.....+.++..++|..+|.-|..+.+... ......+.++..++..|+|+++=|=..+.+.++.++.. +=+.++
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~--~p~~vl 79 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR--HPDEVL 79 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH--ChHHHH
Confidence 345666778888899999999999999999887 33455889999999999999999999999999999952 223578
Q ss_pred HHHHhhcccc
Q 005891 359 VFLVHNFRVD 368 (671)
Q Consensus 359 ~~LL~lf~~d 368 (671)
..|++.|.+.
T Consensus 80 ~~L~~~y~~~ 89 (92)
T PF10363_consen 80 PILLDEYADP 89 (92)
T ss_pred HHHHHHHhCc
Confidence 8888877654
No 187
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.31 E-value=3.4 Score=47.52 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=97.7
Q ss_pred HHhHhhhHHHHHhccCCC--CHHHHHHHHHHH---HHHHHHhcchhh-hhHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q 005891 27 ETILQQIVPPVLNSFSDQ--DSRVRYYACEAL---YNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAAHLLDRLV 100 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~--d~rVR~~A~eaL---~nI~Kv~~~~il-~~f~eIf~~L~kL~~D~d~~Vr~gA~~Ldrll 100 (671)
....+.++..+..|+..+ +.+.|..+.+-+ ..+.+.+....+ ..-+-|+..+.++.+++..
T Consensus 314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~------------- 380 (501)
T PF13001_consen 314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSS------------- 380 (501)
T ss_pred HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccc-------------
Confidence 445677888888888877 778888877666 444444333222 1123333333333321000
Q ss_pred HHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005891 101 KDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (671)
Q Consensus 101 KdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~ 180 (671)
+.-...+...|.++-+.|+.+.+-.+.-+..- -.++.-||.-|.++.+|||....+||.
T Consensus 381 --------------------~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALs 439 (501)
T PF13001_consen 381 --------------------QSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALS 439 (501)
T ss_pred --------------------cCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 01122344666666667776665443222111 456777888889999999999999999
Q ss_pred HHHHHhhcCCC-C--ChHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHH
Q 005891 181 EFLQEIKNSPS-V--DYGRMAEILVQ-RAASPDEFTRLTAITWINEFV 224 (671)
Q Consensus 181 ~ll~~I~~~~~-~--d~~~iI~iLl~-~~~s~d~~irl~al~WI~~~~ 224 (671)
.++..+...+. . ........++. ..++.....|..|+.|...+.
T Consensus 440 sl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 440 SLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACF 487 (501)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC
Confidence 99998876544 1 12233333333 344445678999999997543
No 188
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.19 E-value=15 Score=39.32 Aligned_cols=186 Identities=18% Similarity=0.175 Sum_probs=95.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc---ccch----HhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCC
Q 005891 200 ILVQRAASPDEFTRLTAITWINEFVKLGGDQL---VPYY----ADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (671)
Q Consensus 200 iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l---~pfl----p~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~ 272 (671)
.+++.+ ++++.+...++.-+.+++...+... ..+. +.....+++.+..++.-|...|......++.......
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 5577788888888888887765321 1111 1245567777777889999999888887775544321
Q ss_pred CC---CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhc-----CCCCHHH-----HHH
Q 005891 273 DG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-----SDPSDEV-----VLL 339 (671)
Q Consensus 273 ~~---~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L-----sD~s~eV-----~~~ 339 (671)
.. -.+..+++.+..++.+++......|+.-+..+...-.-...=.-.+.++.+.+.| .+....+ ...
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 11 1234445556665555555566788888888876543333222366777777777 2333222 223
Q ss_pred HHHHHH---HHhh--ccchHHHHHHHHHhhccccchhhhhHHHH-HHHHHhccCCh
Q 005891 340 VLEVHA---CIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGAL-IIRRLCVLLDA 389 (671)
Q Consensus 340 ~l~lLa---~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~-IIR~Lc~~L~~ 389 (671)
++|+|+ .+++ .+.+ ++..|.+..+.-.|.-=.|..+ ++|+|+..-+.
T Consensus 221 ~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred HHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 445552 2221 1223 6666666666555533445554 67777766554
No 189
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=12 Score=47.53 Aligned_cols=214 Identities=13% Similarity=0.095 Sum_probs=128.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCchh-HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 005891 120 RERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMA 198 (671)
Q Consensus 120 ~e~i~~~np~vR~~alswL~~L~~ip~~~-li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI 198 (671)
...+.-.|+.+|.-++.-+..+.+-.+.+ ....+|....-..++..|.+++||.++...+..++..+++.....+..++
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li 126 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLI 126 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 33445578999999998888887766655 34458888888889999999999999999999999999887677889999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhc--CcCcccchHhHHHHHhhhhcC----CcHhHHHHHH--------------
Q 005891 199 EILVQRAASPDEFTRLTAITWINEFVKLG--GDQLVPYYADILGAILPCISD----KEEKIRVVAR-------------- 258 (671)
Q Consensus 199 ~iLl~~~~s~d~~irl~al~WI~~~~~l~--~~~l~pflp~LLp~LL~~Lsd----~~~eIR~~A~-------------- 258 (671)
++.+-..-+.+..+...|-.-....-.-. +....-+-|.+.+.+...+.. +-.+.|..+.
T Consensus 127 ~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ss 206 (1312)
T KOG0803|consen 127 PPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSS 206 (1312)
T ss_pred hhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHH
Confidence 99998888888777665544332211110 111122344444444443221 1111111111
Q ss_pred -HHHHHHHHhcCCCCCCCChHhHH------HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcC
Q 005891 259 -ETNEELRAIKADPADGFDVGPIL------SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALS 330 (671)
Q Consensus 259 -~~n~~L~~~i~~~~~~~dl~~il------~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~Ls 330 (671)
.+...+++.-++..+-.+..+-. +..-..+.+.+...|.+.++-+..+.+..+.-+.+. ...+-|.++.. .
T Consensus 207 Ll~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~-~ 285 (1312)
T KOG0803|consen 207 LLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGS-I 285 (1312)
T ss_pred HHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHcc-c
Confidence 11122222222211111122211 124445567777889999999999988887774443 44444444444 4
Q ss_pred CCCH
Q 005891 331 DPSD 334 (671)
Q Consensus 331 D~s~ 334 (671)
|+.+
T Consensus 286 ~~~d 289 (1312)
T KOG0803|consen 286 DSLD 289 (1312)
T ss_pred cccc
Confidence 4444
No 190
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.05 E-value=67 Score=41.07 Aligned_cols=303 Identities=17% Similarity=0.187 Sum_probs=173.1
Q ss_pred HHHhhhhhHHhHhhhHHHH---HhccCCCC---HHHHHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHhhcCCc-h
Q 005891 19 YADLFFYSETILQQIVPPV---LNSFSDQD---SRVRYYACEALYNIAKVVR----GDFIIFFNQIFDALCKLSADSD-A 87 (671)
Q Consensus 19 ~~~~~~~~~~yl~~Ii~pv---L~~l~D~d---~rVR~~A~eaL~nI~Kv~~----~~il~~f~eIf~~L~kL~~D~d-~ 87 (671)
||--.+....++..|-.-+ +.+++|+. -.-|+|-.|.+.++. .+- .+.-..+.++|..+..++.++- .
T Consensus 81 ~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~ 159 (1266)
T KOG1525|consen 81 YAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPK 159 (1266)
T ss_pred hCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccH
Confidence 3333333344555554444 56777774 233444455544433 111 1112345566777777775543 3
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHh
Q 005891 88 NVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERM----NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM 163 (671)
Q Consensus 88 ~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i----~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~l 163 (671)
.|-+ +-.++-.+.++.+. .-..++-.+..-+ .+..+..+..+-..|..........+..++..-+-
T Consensus 160 ~v~~----~~~i~~~li~e~d~-v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~----- 229 (1266)
T KOG1525|consen 160 KVFN----MLDIAIMLITEEDT-VQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLT----- 229 (1266)
T ss_pred HHHH----HHHHHHHHHHhhcc-chHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHh-----
Confidence 4444 33333334444332 2334444444444 34556667766666666554443333333333222
Q ss_pred cCC-CChHHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHH
Q 005891 164 LSD-SSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGA 241 (671)
Q Consensus 164 L~D-~~~eVR~~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~ 241 (671)
..+ ....++..-.+.+-++-... ++ +-.++|.|-.-+.+.++++|+.|..-++.+....+..+..=.+.+..+
T Consensus 230 ~~~s~~~~~~~~~he~i~~L~~~~-----p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~ 304 (1266)
T KOG1525|consen 230 EYKSRQSSLKIKYHELILELWRIA-----PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSA 304 (1266)
T ss_pred hccccccchhhHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHH
Confidence 222 22223332223222222211 12 567899999999999999999999999999887776664557889999
Q ss_pred HhhhhcCCcHhHHHHHHHHHHHHHHh--------------c---CCCC--------------CCC--Ch-HhHHHHHHHh
Q 005891 242 ILPCISDKEEKIRVVARETNEELRAI--------------K---ADPA--------------DGF--DV-GPILSIATRQ 287 (671)
Q Consensus 242 LL~~Lsd~~~eIR~~A~~~n~~L~~~--------------i---~~~~--------------~~~--dl-~~il~~L~~~ 287 (671)
.+.-+.|-.+++|-.+.+.-...+-. . .+.. ..+ .+ ..++..+.++
T Consensus 305 fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR 384 (1266)
T KOG1525|consen 305 FLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAER 384 (1266)
T ss_pred HHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHH
Confidence 99999999999998877654332210 0 0100 001 12 2288889999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhC-------hhhHhhhhhHHHHHHHHhcCCCCHHHH
Q 005891 288 LSSEWEATRIEALHWISTLLNRH-------RTEVLHFLNDIFDTLLKALSDPSDEVV 337 (671)
Q Consensus 288 L~~~~~~tRiaaL~WL~~L~~~~-------p~~i~~~l~~l~p~LL~~LsD~s~eV~ 337 (671)
+.+..|.+|..|++-|..+++++ ...+.+-.+.+-..||..+.+.+-+-|
T Consensus 385 ~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 385 LRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 99999999999999999999961 233444455555666676666654444
No 191
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=54 Score=39.41 Aligned_cols=311 Identities=17% Similarity=0.186 Sum_probs=162.1
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHhhc-----CCchHHHHHHHHHHHHHHHhhccc
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSA-----DSDANVQSAAHLLDRLVKDIVTES 107 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~-~il~~f~eIf~~L~kL~~-----D~d~~Vr~gA~~LdrllKdIv~e~ 107 (671)
+..+..-+.|.---||..|.--+..++|.... .-+.-|..+|.-|+.++. |+.--|-..-..|..++|+..+..
T Consensus 168 IS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ 247 (970)
T KOG0946|consen 168 ISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQ 247 (970)
T ss_pred HHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchh
Confidence 34455667788888888876666566554332 224557888888888773 333333333367788888877765
Q ss_pred chhhhhhhHHHHHHhhc----CC----CHHH-H----HHHHHHHHHhhcCCchhHHh-------chHHHHHHHHHhcC--
Q 005891 108 DQFSIEEFIPLLRERMN----VL----NPYV-R----QFLVGWITVLDSVPDIDMLG-------FLPDFLDGLFNMLS-- 165 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~----~~----np~v-R----~~alswL~~L~~ip~~~li~-------~Lp~fL~gLf~lL~-- 165 (671)
+-|-=..+||.|...+. .. .|.. | ..++..+..+.+.....-.. .=..+++.|+..+.
T Consensus 248 ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 248 NFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred hHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 55666777888875553 11 1211 2 23334444444332221111 22245777776554
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcC---------CCCC--hHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhcCcCccc
Q 005891 166 DSSHEIRQQADSALWEFLQEIKNS---------PSVD--YGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVP 233 (671)
Q Consensus 166 D~~~eVR~~a~~~L~~ll~~I~~~---------~~~d--~~~iI~iLl~~~~s~d~-~irl~al~WI~~~~~l~~~~l~p 233 (671)
|-..+|+..+...+...++.-... |+.+ -+.|+-.+.....+..+ ..|-.++..+..+.--..+.-..
T Consensus 328 ~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~ 407 (970)
T KOG0946|consen 328 GVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRK 407 (970)
T ss_pred CCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHH
Confidence 357789988877666655433221 1111 23344444445555544 45666665555444322222233
Q ss_pred chHhHHHHHhh--------------hhcCCcHhHHHHHHHHH-----------HHHHHhcCCCCCCCChHhHHHHH---H
Q 005891 234 YYADILGAILP--------------CISDKEEKIRVVARETN-----------EELRAIKADPADGFDVGPILSIA---T 285 (671)
Q Consensus 234 flp~LLp~LL~--------------~Lsd~~~eIR~~A~~~n-----------~~L~~~i~~~~~~~dl~~il~~L---~ 285 (671)
|+.+++|.--. .+.+.++----.+..+. ..|+++--....+-|-..++... .
T Consensus 408 ~l~tllp~~~nst~Nsl~ag~l~~~~l~s~d~~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~ct~~ 487 (970)
T KOG0946|consen 408 FLKTLLPSSTNSTSNSLSAGQLLLVGLSSTDSLDNWFTAVILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQCTNL 487 (970)
T ss_pred HHHHHhhhhccccccchhhhhHHHHhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHHHHH
Confidence 45555552211 11222211000000000 11222111111122223444432 2
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhh--HHHHHHHHhcCCCC----HHHHHHHHHHH
Q 005891 286 RQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPS----DEVVLLVLEVH 344 (671)
Q Consensus 286 ~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD~s----~eV~~~~l~lL 344 (671)
......-..+|+.-|..|+...-+||..+..|+. .++++|+..+.|.. +.|+..-|-.+
T Consensus 488 ~~~~t~r~qt~vglLmlL~~WL~~cp~AV~dFLs~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~l 552 (970)
T KOG0946|consen 488 KLQGTSRHQTRVGLLMLLITWLYGCPDAVKDFLSESSIIQYLTTQLMDNQGSESEQVIQGLCAFL 552 (970)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHcCCcHHHHHHHccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 2233345778999999999999999999988776 48888888887663 44565444443
No 192
>PF05536 Neurochondrin: Neurochondrin
Probab=89.41 E-value=49 Score=38.59 Aligned_cols=161 Identities=18% Similarity=0.224 Sum_probs=108.2
Q ss_pred HhHhhhHHHHHhccCCCCH-HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcc
Q 005891 28 TILQQIVPPVLNSFSDQDS-RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE 106 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~-rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e 106 (671)
+-+-.-+|.++.++...+. .+-.-|.+.|+.|+..-.|.-.-.=.+.++.|+..+.+.......+...+..++...-.+
T Consensus 94 ~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 94 PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcchh
Confidence 3455678899999987777 888888888888883222211101125677888877775444444447666666543321
Q ss_pred ---cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch------hHHhchHHHHHHHHHhc-CCCChHHHHHHH
Q 005891 107 ---SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI------DMLGFLPDFLDGLFNML-SDSSHEIRQQAD 176 (671)
Q Consensus 107 ---~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~------~li~~Lp~fL~gLf~lL-~D~~~eVR~~a~ 176 (671)
.....+..+++.+.+.+....-..|--++.-+..+....+. .--..++.+..|+-.++ +-+.++-|..+.
T Consensus 174 ~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al 253 (543)
T PF05536_consen 174 SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPAL 253 (543)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 12344667888888888776666677778888877554421 12347888888888888 457889999999
Q ss_pred HHHHHHHHHhhc
Q 005891 177 SALWEFLQEIKN 188 (671)
Q Consensus 177 ~~L~~ll~~I~~ 188 (671)
.+...+++..|.
T Consensus 254 ~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 254 NLAASLLDLLGP 265 (543)
T ss_pred HHHHHHHHHhCh
Confidence 999999988763
No 193
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.21 E-value=1.6 Score=38.45 Aligned_cols=74 Identities=16% Similarity=0.315 Sum_probs=59.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc
Q 005891 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (671)
Q Consensus 157 L~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l 231 (671)
++.....+.||.+-||..+-..|..+++.=. .+..+.+.++.+++..++++|+.|=+.|+.-+..++...|...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 4455568899999999999888888776332 1345789999999999999999999999999998888776543
No 194
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=89.16 E-value=3.6 Score=37.73 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=61.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHH-HhccCC------hHH
Q 005891 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRR-LCVLLD------AER 391 (671)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~-Lc~~L~------~E~ 391 (671)
+=.++.|++.|.|++++|+..|+++|.+.+..+.+.+.++.- +..-..|.++|..+.-+ |...-+ ...
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~-----~p~l~~L~~~g~~Ll~~~lS~~~Gf~~L~~~~~ 81 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL-----RPSLDHLGDIGSPLLLRFLSTPSGFRYLNEIGY 81 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc-----CcHHHHHHHcCHHHHHHHHcchHHHHHhcchhH
Confidence 345788999999999999999999999999766666665532 11123344455543333 322211 123
Q ss_pred HHHHHHHhhcccCChhHHHHHHHHHHHHhcc
Q 005891 392 VYRELSTILEGEADLDFACTMVQALNLILLT 422 (671)
Q Consensus 392 Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLT 422 (671)
|-+.+-.|. +..+.++|..+=..+...+.+
T Consensus 82 v~~El~~W~-~~~N~~YV~~vE~~l~~~~~~ 111 (115)
T PF14663_consen 82 VEKELDKWF-ESFNKEYVKLVEEFLSEALTN 111 (115)
T ss_pred HHHHHHHHH-HcccHHHHHHHHHHHHHHHhc
Confidence 555566666 347788887776666655544
No 195
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=89.07 E-value=17 Score=42.96 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCC
Q 005891 195 GRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (671)
Q Consensus 195 ~~iI~iLl~~~~s~d-~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~ 273 (671)
..+.|.|..-...++ ..+.+..++-++.+.+-.+..- +..+|+|.|..++.+.+..|.+.+.+...++.+.+..
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~--~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~--- 422 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEE--VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV--- 422 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHH--HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---
Confidence 344555554444222 3344444555554454444332 4899999999999999999999998888877776531
Q ss_pred CCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 274 GFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 274 ~~dl~~il~~L~~~L-~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
..-=+.+++.|..-. .+.+...|..||..+..+.+.+..- .-++ .++.++++..-.+|+++...+++.....
T Consensus 423 ~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~--~v~d-~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 423 PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA--AVLD-ELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH--HhHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 111146777666654 4567889999999999999555332 2244 4455778888889999988887776655
No 196
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.00 E-value=4.9 Score=44.33 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=99.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc-CCCCChHHHH
Q 005891 120 RERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN-SPSVDYGRMA 198 (671)
Q Consensus 120 ~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~-~~~~d~~~iI 198 (671)
..++..-|..||+-++.-+..+.+.-+..+..++-.+++.+..+..|.+..||....+.++.+.--... ..+..+.-++
T Consensus 64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~ 143 (393)
T KOG2149|consen 64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM 143 (393)
T ss_pred HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence 344677899999999999998877666678889999999999999999999999998888886543322 1133456677
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc
Q 005891 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (671)
Q Consensus 199 ~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls 247 (671)
+++...+.+.-+++|.-++..+..++...|+.+..+...+++.....++
T Consensus 144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 7888888888899999999999988888887776666665555444444
No 197
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=39 Score=40.87 Aligned_cols=215 Identities=13% Similarity=0.081 Sum_probs=128.7
Q ss_pred HHHHHHHHHhhcc----cchhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchh---HHh--chHHHHHHHHHh
Q 005891 94 HLLDRLVKDIVTE----SDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDID---MLG--FLPDFLDGLFNM 163 (671)
Q Consensus 94 ~~LdrllKdIv~e----~~~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~---li~--~Lp~fL~gLf~l 163 (671)
+.|..+|+-++-- .+.|+++.++|.|...+.+ .|+++...+|-+++.+..+.+.. .+. -+|-|++.|..
T Consensus 187 eal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~- 265 (1051)
T KOG0168|consen 187 EALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT- 265 (1051)
T ss_pred HHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh-
Confidence 3355556644432 2469999999999999988 68999999999999998876644 233 57888876653
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhcCC--CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHH
Q 005891 164 LSDSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGA 241 (671)
Q Consensus 164 L~D~~~eVR~~a~~~L~~ll~~I~~~~--~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~ 241 (671)
=..-||-.++-++|..+-+.-++.. .-.+...+.++--+. --+|+.|+....++|+-.+.+-..|+-+-+|.
T Consensus 266 --IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFS----i~aQR~AlaiaaN~Cksi~sd~f~~v~ealPl 339 (1051)
T KOG0168|consen 266 --IEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFS----IHAQRVALAIAANCCKSIRSDEFHFVMEALPL 339 (1051)
T ss_pred --hhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 2334666666665555554332110 001222222222111 23678888888888887666656789999999
Q ss_pred HhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCC---hHhHHHHHHHhcCCC----cHHHHHHHHHHHHHHHhhChhhH
Q 005891 242 ILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQLSSE----WEATRIEALHWISTLLNRHRTEV 314 (671)
Q Consensus 242 LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d---l~~il~~L~~~L~~~----~~~tRiaaL~WL~~L~~~~p~~i 314 (671)
+-+.+++.+...-+.+.-|...+.+.+...++.++ =..+++-+.+.+.-. +..+....+..+..+..+||...
T Consensus 340 L~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~ 419 (1051)
T KOG0168|consen 340 LTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLF 419 (1051)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHH
Confidence 99999999877666666665555544433222111 013333333333211 12344455556666666666554
Q ss_pred h
Q 005891 315 L 315 (671)
Q Consensus 315 ~ 315 (671)
.
T Consensus 420 ~ 420 (1051)
T KOG0168|consen 420 R 420 (1051)
T ss_pred H
Confidence 3
No 198
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=88.96 E-value=1.3 Score=40.10 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC
Q 005891 208 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 208 ~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
.+...|..++.-|.+++++.+..+.++.|++...+..++..+ +.|..|.+++..+.+..++
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE 87 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH
Confidence 466789999999999999999999999999999999888876 8999999999999988764
No 199
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=88.94 E-value=65 Score=43.71 Aligned_cols=197 Identities=18% Similarity=0.207 Sum_probs=118.9
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHH-HHHhcc----hhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh-hcc
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNI-AKVVRG----DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-VTE 106 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI-~Kv~~~----~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdI-v~e 106 (671)
........+.+....+|..|...+.+- .+..+. +...+++.+-.-+..+..|.+.+++-|+.....++.-+ .++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ 85 (2341)
T KOG0891|consen 6 VLKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTE 85 (2341)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhcc
Confidence 445556667777777777776666664 333332 12245566666677777888888876663322222211 122
Q ss_pred cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
...+... -+..|++.++++- +.++-..+...++.+.-.+
T Consensus 86 ~~~~~~s----------------------------------~~~n~l~~l~~~~-------~~~~~~~a~~~~~l~~~~~ 124 (2341)
T KOG0891|consen 86 HDRKNIS----------------------------------RLANYLRYLLPSN-------DVEVMELAAKSLGLLAAPG 124 (2341)
T ss_pred cccchhH----------------------------------hHHHHHHHhhccC-------ChHHHHHHHHHHHHHhccc
Confidence 2111111 1334555555532 4444555556677776655
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHH
Q 005891 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (671)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (671)
+....-..+..+.-+++-+.+..+.-|..|+.-+.......|..+.|+++.+...++-..-+.++.||..|..+.....-
T Consensus 125 ~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~ 204 (2341)
T KOG0891|consen 125 KTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLS 204 (2341)
T ss_pred cccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHh
Confidence 53222223333333444343334445677777778888888999999999999999999999999999999998877655
Q ss_pred hcCC
Q 005891 267 IKAD 270 (671)
Q Consensus 267 ~i~~ 270 (671)
...+
T Consensus 205 ~~~~ 208 (2341)
T KOG0891|consen 205 SLAQ 208 (2341)
T ss_pred hhhh
Confidence 5443
No 200
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.84 E-value=49 Score=38.75 Aligned_cols=168 Identities=14% Similarity=0.080 Sum_probs=101.6
Q ss_pred HhHHHHHhhhhcC----CcHhHHHHHHHHHHHHHHhc-CCC--------CCCCChHhHHHHHHHhcC----CCcHHHHHH
Q 005891 236 ADILGAILPCISD----KEEKIRVVARETNEELRAIK-ADP--------ADGFDVGPILSIATRQLS----SEWEATRIE 298 (671)
Q Consensus 236 p~LLp~LL~~Lsd----~~~eIR~~A~~~n~~L~~~i-~~~--------~~~~dl~~il~~L~~~L~----~~~~~tRia 298 (671)
+.++..++..+.. ..+.++..|.-+...+..-. ... ......+.+++.+..++. ..+...++.
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 4455555544432 45678888887777765432 220 112223455555555554 455677888
Q ss_pred HHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhH
Q 005891 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP---SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 375 (671)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~---s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~R 375 (671)
+|..|+.+-. +..++.+.+.+.+. +..+|..|++.|.++.. .+=+.+-..|+..|.+...--|-|
T Consensus 510 ~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~--~~~~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 510 YLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK--HCPEKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp HHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG--T-HHHHHHHHHHHHH-TTS-HHHH
T ss_pred HHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh--cCcHHHHHHHHHHhcCCCCChhHH
Confidence 8888887642 34666777777776 68899999999998863 345577788888887776666777
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhcccCChhHHHHHHHHH
Q 005891 376 GALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQAL 416 (671)
Q Consensus 376 g~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~L 416 (671)
..- .-.|-..-++..+...++..+..|.+..+.+-+...|
T Consensus 578 iaA-~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 578 IAA-YLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHH-HHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHH-HHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 444 3444445577889999999998888877766555443
No 201
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=88.57 E-value=1.4 Score=42.74 Aligned_cols=148 Identities=12% Similarity=0.183 Sum_probs=88.6
Q ss_pred CCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 190 PSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 190 ~~~d~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
|..+++++++.++..++.. ++.+|++++.-++.+-.+.| |.-+-+.. ...+.. ..+....+.+..+-..
T Consensus 4 PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-----~~~k~~~~---~~~~~~--~~~~~~~~~~~~l~~~ 73 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDP-----YKHKSIQK---SLDSKS--SENSNDESTDISLPMM 73 (160)
T ss_pred hHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-----HHHhcccc---cCCccc--cccccccchhhHHhhc
Confidence 5567899999999988765 58899999988875554444 22221111 111100 0111111111111111
Q ss_pred CC--CCCCCChHhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005891 269 AD--PADGFDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (671)
Q Consensus 269 ~~--~~~~~dl~~il~~L~~~L~~~~-~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa 345 (671)
+. ..++..-.-+++.|...|.+.. .....++++.+..+....+.+-.+|+++++|.++..+....+..+.--++-|+
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 11 1112222455667777777654 33455788888888877777779999999999999998777777666665555
Q ss_pred HH
Q 005891 346 CI 347 (671)
Q Consensus 346 ~I 347 (671)
.+
T Consensus 154 ~l 155 (160)
T PF11865_consen 154 DL 155 (160)
T ss_pred HH
Confidence 44
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.57 E-value=7.6 Score=47.46 Aligned_cols=190 Identities=23% Similarity=0.236 Sum_probs=103.1
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchh--hhhHHHHHHHHHHhhcCCchHHHHHHH-------HHHHHHH-
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--IIFFNQIFDALCKLSADSDANVQSAAH-------LLDRLVK- 101 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i--l~~f~eIf~~L~kL~~D~d~~Vr~gA~-------~LdrllK- 101 (671)
+=+|.||.-|-.+--|+|.- .-|...-.. +... +.-=-.|||.+.||++.+-.+.|-.-. ++|.-|.
T Consensus 472 eQLPiVLQVLLSQvHRlRAL--~LL~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQVHRLRAL--VLLARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred HhcchHHHHHHHHHHHHHHH--HHHHHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH
Confidence 34566666666666666643 222222110 1100 111127899999999988777765431 1232222
Q ss_pred Hhhcccc----------------------hhhhhh----------------hHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 005891 102 DIVTESD----------------------QFSIEE----------------FIPLLRERMNV-LNPYVRQFLVGWITVLD 142 (671)
Q Consensus 102 dIv~e~~----------------------~f~L~~----------------fIP~L~e~i~~-~np~vR~~alswL~~L~ 142 (671)
|+|.|.+ +|.|.. +|-.=.+.+.+ +.|-.||+++-+|..|=
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 4555421 232322 23333445556 46889999999998763
Q ss_pred cCCc-hhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC---------CCC-------hHHHHH----HH
Q 005891 143 SVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP---------SVD-------YGRMAE----IL 201 (671)
Q Consensus 143 ~ip~-~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~---------~~d-------~~~iI~----iL 201 (671)
.--+ ......=..-.+.|...|+|+.+|||.+|.-+|+.|+....... .++ .++++. -+
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 2111 11111112224667779999999999999999999998542110 011 233444 33
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHH
Q 005891 202 VQRAASPDEFTRLTAITWINEFV 224 (671)
Q Consensus 202 l~~~~s~d~~irl~al~WI~~~~ 224 (671)
+...++..+.+|.+..+.+.+++
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHH
Confidence 44455556666666555555544
No 203
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=88.56 E-value=5.9 Score=43.29 Aligned_cols=143 Identities=18% Similarity=0.323 Sum_probs=93.8
Q ss_pred chhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCC-------CHHHHHHHHHH
Q 005891 65 GDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVL-------NPYVRQFLVGW 137 (671)
Q Consensus 65 ~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~-------np~vR~~alsw 137 (671)
.|...||.+|..++.. .+...|..| |.. +-++ -.+..++|.+..++.+. |-..=..++..
T Consensus 174 ~Elq~yf~~It~a~~~----~~~~~r~~a--L~s----L~tD---~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~ 240 (343)
T cd08050 174 KELQLYFEEITEALVG----SNEEKRREA--LQS----LRTD---PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRM 240 (343)
T ss_pred HHHHHHHHHHHHHHhC----CCHHHHHHH--HHH----hccC---CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 3555788887777643 344444444 333 3333 35777888888777632 45555667777
Q ss_pred HHHhhcCCchhHHhchHHHHHHHHHhc----------CCCChHHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcC
Q 005891 138 ITVLDSVPDIDMLGFLPDFLDGLFNML----------SDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAA 206 (671)
Q Consensus 138 L~~L~~ip~~~li~~Lp~fL~gLf~lL----------~D~~~eVR~~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~ 206 (671)
+.-|..-+...+-.|+..+++.+..++ .|.+-.+|.-|...|..+++.++.. ... .+.++..+...+.
T Consensus 241 v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 241 VRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-YNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHc
Confidence 778888888899999999999998666 3344589999999999999988753 122 4566667776666
Q ss_pred CCC-HH-HHHHHHHHHH
Q 005891 207 SPD-EF-TRLTAITWIN 221 (671)
Q Consensus 207 s~d-~~-irl~al~WI~ 221 (671)
++. +. ...-|+.-+.
T Consensus 320 d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 320 DPKKPLTTHYGAIVGLS 336 (343)
T ss_pred CCCCCcchhhHHHHHHH
Confidence 554 22 2344444443
No 204
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.93 E-value=69 Score=38.48 Aligned_cols=182 Identities=18% Similarity=0.228 Sum_probs=103.0
Q ss_pred chHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 005891 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE 313 (671)
Q Consensus 234 flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~ 313 (671)
+...+.|.+-.|+.+....+--.|.++...+-..-. -.+.+.+.+|.-.+.+.....|-+|..-|..++...|..
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-----r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-----RELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH-----hhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 345566667778887766655555555444332211 124557788888888988999999999999999998887
Q ss_pred HhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHH---HHHHHhhccccchhhhhHHHHHHHHHhccCChH
Q 005891 314 VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQL---VVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE 390 (671)
Q Consensus 314 i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~f---m~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E 390 (671)
+..-..++= +..+|..-.+-.-+..+|-+=+ ++..-+.. +.+...-.+++-+..- .--||-||...+-+
T Consensus 317 v~~cN~elE----~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivv---vdai~sLc~~fp~k 388 (865)
T KOG1078|consen 317 VTVCNLDLE----SLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVV---VDAIRSLCLKFPRK 388 (865)
T ss_pred ccccchhHH----hhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEe---HHHHHHHHhhccHH
Confidence 654333322 2234544444433444333322 12222222 2222222233322211 22367777776653
Q ss_pred --HHHHHHHHhhcccCChhHHHHHHHHHHHHhccchhHHH
Q 005891 391 --RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSE 428 (671)
Q Consensus 391 --~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~ 428 (671)
....-++++|.++...+|-+-+|.+.-.|.--.++-.+
T Consensus 389 ~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe 428 (865)
T KOG1078|consen 389 HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE 428 (865)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh
Confidence 23445566666667777777777777777665554444
No 205
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.82 E-value=1e+02 Score=40.60 Aligned_cols=245 Identities=14% Similarity=0.138 Sum_probs=137.3
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-hhcCCchHHHHHH-HHHHHHHHHhhcccchhhh
Q 005891 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (671)
Q Consensus 35 ~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~k-L~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L 112 (671)
--+...+.-+++..|-++++++..++.++.... +..++.+..++ +.+-.|+.-|.|- -++..+-|+..+-.+...+
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~--f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl 956 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAP--FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHL 956 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhc
Confidence 345677788899999999999999887765433 23466666664 3445566666666 5678888866654333445
Q ss_pred hhhHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHhhcCC
Q 005891 113 EEFIPLLRERMNVLN-PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM-LSDSSHEIRQQADSALWEFLQEIKNSP 190 (671)
Q Consensus 113 ~~fIP~L~e~i~~~n-p~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~l-L~D~~~eVR~~a~~~L~~ll~~I~~~~ 190 (671)
..-+-.+.....|.+ |.|+.+.+-.+..+..-.+.-...|.-.-+.-+.++ ++++.. +....++.++..- +
T Consensus 957 ~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~--~~ev~q~~~R~~~-----~ 1029 (2067)
T KOG1822|consen 957 NTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTS--HVEVHQCYNRCFN-----G 1029 (2067)
T ss_pred ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcc--hhhhhhhhccccc-----c
Confidence 555667888888854 599999999988876554433344444444433333 355542 2222232332221 2
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC
Q 005891 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
+.|.+.++..+-..++-.... +...-+-...+-+..-.++.+++.+...|.++.+.+.-....
T Consensus 1030 ~~~~~alittlgpeL~~N~~~-----------------d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr 1092 (2067)
T KOG1822|consen 1030 DDDEDALITTLGPELGPNGDK-----------------DSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR 1092 (2067)
T ss_pred chhHHHHHHhcccccCCCCcc-----------------cchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch
Confidence 344555555544443322100 000001111122222234555666777777777766544332
Q ss_pred CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005891 271 PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (671)
Q Consensus 271 ~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~ 308 (671)
..+++.++..+...+.+...-.|-++..-+..+..
T Consensus 1093 ---~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1093 ---HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred ---hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhH
Confidence 56788888888887776554444443333333333
No 206
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.71 E-value=60 Score=37.52 Aligned_cols=300 Identities=13% Similarity=0.168 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhccc--chhhhh------hhHHHHHHhhcCCC--HHHHHHHHHHH
Q 005891 69 IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES--DQFSIE------EFIPLLRERMNVLN--PYVRQFLVGWI 138 (671)
Q Consensus 69 ~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~--~~f~L~------~fIP~L~e~i~~~n--p~vR~~alswL 138 (671)
.+...++..++.++.+++.+- +..+.+.++-..+.. ..++.+ .++-.+.+.+.+.+ ..+-..++..+
T Consensus 149 ~~~~~~L~~l~~lLe~~~l~~---~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll 225 (559)
T KOG2081|consen 149 AQVSKVLVFLSDLLERSDLKS---SDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALL 225 (559)
T ss_pred HhHHHHHHHHHHHHhhcCCCh---hhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHH
Confidence 344566777777887766542 122333444232221 122222 33444444444322 23444445555
Q ss_pred HHhhcCCc---hh-HHhchHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHh----hcCCCCChHHHHHHHHHhcCCCC
Q 005891 139 TVLDSVPD---ID-MLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEI----KNSPSVDYGRMAEILVQRAASPD 209 (671)
Q Consensus 139 ~~L~~ip~---~~-li~~Lp~fL~gLf~lL-~D~~~eVR~~a~~~L~~ll~~I----~~~~~~d~~~iI~iLl~~~~s~d 209 (671)
+....... .+ .+-.-+.+|+..|++. .-.+.|=+.+.+..+..+.+.. ...|+ ++-.+++.++-...+++
T Consensus 226 ~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~-~~l~~vellLl~~~h~~ 304 (559)
T KOG2081|consen 226 YCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPE-EFLRIVELLLLVAGHND 304 (559)
T ss_pred HHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCC-cchhHHHHHHHhccCCc
Confidence 54433322 22 2223344567677432 2233444455555555555433 33333 45667878888888888
Q ss_pred HHHHHHHHH-HHH--HHHhhc-----CcCcccchHhHHHHHhhhhcCCc------------HhHHHHHHHHHHHHHHhcC
Q 005891 210 EFTRLTAIT-WIN--EFVKLG-----GDQLVPYYADILGAILPCISDKE------------EKIRVVARETNEELRAIKA 269 (671)
Q Consensus 210 ~~irl~al~-WI~--~~~~l~-----~~~l~pflp~LLp~LL~~Lsd~~------------~eIR~~A~~~n~~L~~~i~ 269 (671)
+++-..... |.+ +.+... -..+.||.-+++..+.....++. .+-|....++.....-+++
T Consensus 305 ~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iig 384 (559)
T KOG2081|consen 305 TEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIG 384 (559)
T ss_pred hhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhC
Confidence 876655554 653 222221 22468999999999998877543 1344444444444444454
Q ss_pred CCCCCCChHhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 005891 270 DPADGFDVGPILSIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHA 345 (671)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L--~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD--~s~eV~~~~l~lLa 345 (671)
+ ++.+..+...+ ....|+.-+|+|.-+.+++...+ +.-+.++|.+++.+.. ....+|..++-+++
T Consensus 385 s-------~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~----~~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g 453 (559)
T KOG2081|consen 385 S-------DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVS----PEENTIMPEVLKLICNLPEQAPLRYTSILLLG 453 (559)
T ss_pred c-------HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCC----ccccchHHHHHHHHhCCccchhHHHHHHHHHH
Confidence 3 34444333333 34579999999999998888764 4456677777777643 23338889999999
Q ss_pred HHhh---ccchHH-HHHHHHHhhccccchhhhhHHHHHHHHHhc
Q 005891 346 CIAK---DLQHFR-QLVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (671)
Q Consensus 346 ~Is~---~~~~F~-~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~ 385 (671)
++++ +.+.+. .+..-+...+...+ +..-++..++++|.
T Consensus 454 ~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 454 EYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 9993 444444 44444444443333 67667777777775
No 207
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.63 E-value=45 Score=35.97 Aligned_cols=56 Identities=23% Similarity=0.232 Sum_probs=45.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHH
Q 005891 119 LRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQA 175 (671)
Q Consensus 119 L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a 175 (671)
+.+++.+.+|.||+.++..+-.+..-+...+..|=-..++.+++++.|+.+ .+.+|
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~ 63 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEPAA 63 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccHHH
Confidence 456778899999999998888877776666777777889999999999887 44443
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.42 E-value=20 Score=44.03 Aligned_cols=244 Identities=17% Similarity=0.201 Sum_probs=136.9
Q ss_pred HHHHHHHHHhhcccchhhh-hhhHHHHHHhhcCCCHHHHHHHH-HHHHHh--hcCCchhHHh-----chHHHHHHHHHhc
Q 005891 94 HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLV-GWITVL--DSVPDIDMLG-----FLPDFLDGLFNML 164 (671)
Q Consensus 94 ~~LdrllKdIv~e~~~f~L-~~fIP~L~e~i~~~np~vR~~al-swL~~L--~~ip~~~li~-----~Lp~fL~gLf~lL 164 (671)
.+|.|++. +..-.-..+| --+.|.++.++++.-.+.|..++ -|-.-| ++....|++. |+=. .|
T Consensus 492 ~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~-------vL 563 (1387)
T KOG1517|consen 492 VLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQ-------VL 563 (1387)
T ss_pred HHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEE-------Ee
Confidence 77777765 2110000111 23679999999999999998777 344433 3333334432 2222 33
Q ss_pred CC--C-ChHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhh------cCcCccc
Q 005891 165 SD--S-SHEIRQQADSALWEFLQEIKNSPSV-DYGRMAEILVQRAASP-DEFTRLTAITWINEFVKL------GGDQLVP 233 (671)
Q Consensus 165 ~D--~-~~eVR~~a~~~L~~ll~~I~~~~~~-d~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l------~~~~l~p 233 (671)
.| . ++|=|.+|.-.|..++..++..... =-+++|.+++++++++ ++..|.=++--++.+=+- .|...
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~-- 641 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRD-- 641 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccc--
Confidence 33 2 3588888888888887755421111 1356888999999995 677776433333322221 12111
Q ss_pred chHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 005891 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE 313 (671)
Q Consensus 234 flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~ 313 (671)
.--.-+...++|+.||||.+|.=+.++++....+ ++++=..++.+.+.-+...+++.
T Consensus 642 ---~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d-----~fde~~~~~~~~~~l~~~~~~~E--------------- 698 (1387)
T KOG1517|consen 642 ---NAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSD-----NFDEQTLVVEEEIDLDDERTSIE--------------- 698 (1387)
T ss_pred ---cHHHHHHHHhcCccHHHHHHHHHHHHHHhccccc-----ccchhhhhhhhhhcchhhhhhHH---------------
Confidence 1123455678899999999999999999887654 12222223323332111111111
Q ss_pred HhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhccccchhhhhH
Q 005891 314 VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-LQHFRQLVVFLVHNFRVDNSLLEKR 375 (671)
Q Consensus 314 i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~-~~~F~~fm~~LL~lf~~d~~lLe~R 375 (671)
.....-.-.++..++|.++.|+......++++.-+ ..+|.-++. .....+...||.+
T Consensus 699 --~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~---n~~~~~~~~lE~~ 756 (1387)
T KOG1517|consen 699 --DLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG---NYLLPESSSLEKS 756 (1387)
T ss_pred --HHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh---hhcccchhhhhcc
Confidence 11111113578889999999999988899998854 344444443 3344444444543
No 209
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.31 E-value=7.4 Score=45.81 Aligned_cols=129 Identities=17% Similarity=0.228 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh-cCCchHH
Q 005891 11 IIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS-ADSDANV 89 (671)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~-~D~d~~V 89 (671)
+|.|+--.+..+.+. ++..+.|+|-+..++.|.+.++...+...+..+++.+..... -+-|+|.+..+. .-....|
T Consensus 369 ~i~e~mdlL~~Kt~~-e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l~~l~~~tt~~~v 445 (700)
T KOG2137|consen 369 FILENMDLLKEKTPP-EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQAILPRLKNLAFKTTNLYV 445 (700)
T ss_pred hHHhhHHHHHhhCCh-HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HHHHHHHhhcchhcccchHH
Confidence 444554445555565 788999999999999999999999999999888886654333 247888888765 3445566
Q ss_pred HHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhh-cCCc
Q 005891 90 QSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD-SVPD 146 (671)
Q Consensus 90 r~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~-~ip~ 146 (671)
|..+ .++..+++ ..+.+.+-..++.+.++++..+|.+....+.....+. ..++
T Consensus 446 kvn~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 446 KVNVLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 6655 55555553 2233455556666778899999999998888777553 3444
No 210
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.16 E-value=12 Score=35.09 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=60.1
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch-H-HHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHhh
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-P-DFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L-p-~fL~gLf~lL~D---~~~eVR~~a~~~L~~ll~~I~ 187 (671)
..-+-.|..++...||.+...++..+..+.+-.|..+...+ . +|+..|.+++.+ ++++||..+.+.+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33445566778889999999999999999888887654333 3 577778888876 478999999999999998887
Q ss_pred cC
Q 005891 188 NS 189 (671)
Q Consensus 188 ~~ 189 (671)
+.
T Consensus 116 ~~ 117 (133)
T cd03561 116 GH 117 (133)
T ss_pred CC
Confidence 53
No 211
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.92 E-value=9.4 Score=43.88 Aligned_cols=151 Identities=19% Similarity=0.118 Sum_probs=93.1
Q ss_pred HhccCCCCHHHHHHHHHHHHHHHHH-hcchhhhhHHHHHHHHHHh-hcCCchHHHHHH-HHHHHHHHHhhcccchhhhhh
Q 005891 38 LNSFSDQDSRVRYYACEALYNIAKV-VRGDFIIFFNQIFDALCKL-SADSDANVQSAA-HLLDRLVKDIVTESDQFSIEE 114 (671)
Q Consensus 38 L~~l~D~d~rVR~~A~eaL~nI~Kv-~~~~il~~f~eIf~~L~kL-~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~ 114 (671)
-..+.|.|+-.||...-++ +-. ++..-. .++..|... ++|.+-+||.|| .+|.= |.-. +-+.
T Consensus 522 ~ell~d~ds~lRy~G~fs~---alAy~GTgn~----~vv~~lLh~avsD~nDDVrRAAViAlGf-----vc~~---D~~~ 586 (926)
T COG5116 522 NELLYDKDSILRYNGVFSL---ALAYVGTGNL----GVVSTLLHYAVSDGNDDVRRAAVIALGF-----VCCD---DRDL 586 (926)
T ss_pred HHHhcCchHHhhhccHHHH---HHHHhcCCcc----hhHhhhheeecccCchHHHHHHHHheee-----eEec---Ccch
Confidence 3456799999999875543 222 222222 344455544 799999999999 33322 2111 1122
Q ss_pred hHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCC
Q 005891 115 FIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (671)
Q Consensus 115 fIP~L~e~i-~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d 193 (671)
+|-..|.+ .+-|++||....-.+...+.-.|.... ++-|-.++.|++.=||+.|+-+++-++-..-..-...
T Consensus 587 -lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a------~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 587 -LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA------TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred -hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH------HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 23333333 457999999998888888777765432 3344457789999999999887777665442222234
Q ss_pred hHHHHHHHHHhcCCCCH
Q 005891 194 YGRMAEILVQRAASPDE 210 (671)
Q Consensus 194 ~~~iI~iLl~~~~s~d~ 210 (671)
+..|+..+..-+.++++
T Consensus 660 v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 660 VKRIIKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHHHHHhhhhH
Confidence 66677766666655544
No 212
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=86.89 E-value=1.1 Score=32.77 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=27.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
.+.+|.|++.|++++++|+..++|+|+.++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999886
No 213
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=86.65 E-value=58 Score=36.84 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=73.2
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcch-hhhhHHHHHHHHHHhhc--CCchHHHHHHHHHHHHHHH-hhcccc
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKLSA--DSDANVQSAAHLLDRLVKD-IVTESD 108 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~-il~~f~eIf~~L~kL~~--D~d~~Vr~gA~~LdrllKd-Iv~e~~ 108 (671)
.-.|.++.+..+|+-+-..|+..+..++..-... -....+.+++-|+..+. |+...+.-|+..|..+++. -.. .
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R--~ 179 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR--F 179 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH--H
Confidence 4566777788889999999988888775321110 11122335556666554 3333344444566665541 111 0
Q ss_pred hhhhhhhHHHHHHhhcC--CCHHHHHHH--HHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChH-HHHHHHHHHHHHH
Q 005891 109 QFSIEEFIPLLRERMNV--LNPYVRQFL--VGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHE-IRQQADSALWEFL 183 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~--~np~vR~~a--lswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~e-VR~~a~~~L~~ll 183 (671)
.|--...++.|.+.+.. .+.+.-+.+ |-|+-.+..- ..+.... +.+++.|..++.++.+| |-+.+..++..++
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 11112234444444432 244555444 4555544432 2222222 45666666677665443 3333445555555
Q ss_pred H
Q 005891 184 Q 184 (671)
Q Consensus 184 ~ 184 (671)
.
T Consensus 258 ~ 258 (429)
T cd00256 258 S 258 (429)
T ss_pred h
Confidence 4
No 214
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.31 E-value=2.8 Score=41.66 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=54.9
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
-+..|++.+.+...+.+..+|..++..+..+..--=..=... ++.|..+.+|+++.||..|.+.+..+-+.-
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~c----vp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQC----VPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHH----HhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 367889999999999999999999999998765221111223 444555999999999999988887777633
No 215
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=86.29 E-value=13 Score=39.00 Aligned_cols=164 Identities=21% Similarity=0.206 Sum_probs=92.9
Q ss_pred HHHHhcCCC--ChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHH------HHHHHHHHhhcCcC
Q 005891 159 GLFNMLSDS--SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTA------ITWINEFVKLGGDQ 230 (671)
Q Consensus 159 gLf~lL~D~--~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~a------l~WI~~~~~l~~~~ 230 (671)
.|...+.|. .+-||..|.++|+.+.. ....+++-+..+++-..++.+| ++|.+.+.+. ..
T Consensus 71 ~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~--~~ 138 (289)
T KOG0567|consen 71 VLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI--AN 138 (289)
T ss_pred HHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc--cc
Confidence 334466665 45699999999988773 2344555555555554555444 5566655543 12
Q ss_pred cccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCC---Ch--HhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005891 231 LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF---DV--GPILSIATRQLSSEWEATRIEALHWIST 305 (671)
Q Consensus 231 l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~---dl--~~il~~L~~~L~~~~~~tRiaaL~WL~~ 305 (671)
-.||.+ .=|. -+....+..++|..-.+.+..+.+-.. .-+ |. ++-++++.+.+..++...|..+---++.
T Consensus 139 ~~p~~S-vdPa-~p~~~ssv~~lr~~lld~t~~l~~Ry~---amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQ 213 (289)
T KOG0567|consen 139 SSPYIS-VDPA-PPANLSSVHELRAELLDETKPLFERYR---AMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQ 213 (289)
T ss_pred cCcccc-CCCC-CccccccHHHHHHHHHhcchhHHHHHh---hhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 233322 1000 001111223444443333333322110 001 12 5778888888888877778877777776
Q ss_pred HHhhChhhHhhhhhHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhh
Q 005891 306 LLNRHRTEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIAK 349 (671)
Q Consensus 306 L~~~~p~~i~~~l~~l~p~LL~~LsD~--s~eV~~~~l~lLa~Is~ 349 (671)
+-..+ -+|.|.+.|-|. .|.||..+.+.|+-|++
T Consensus 214 l~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 214 LQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred ccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 65544 467777777775 57889999999999985
No 216
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.02 E-value=45 Score=34.35 Aligned_cols=206 Identities=17% Similarity=0.162 Sum_probs=128.4
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCCh
Q 005891 116 IPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (671)
Q Consensus 116 IP~L~e-~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~ 194 (671)
+|.|.- .-+..+|.....++..+-.+.... . ...|.+++.|-.+...++.+.+-.+...+..+-+.= ...+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~----~r~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN----DRHF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC----chHH
Confidence 444544 445578888888888887776654 2 567888888888888888888666655555555421 1223
Q ss_pred HHHHHHHHH---h----cC--CCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhh-cCCcHhHHHHHHHHHHHH
Q 005891 195 GRMAEILVQ---R----AA--SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI-SDKEEKIRVVARETNEEL 264 (671)
Q Consensus 195 ~~iI~iLl~---~----~~--s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~L-sd~~~eIR~~A~~~n~~L 264 (671)
+.+-+.+.. . .. +..++.......-+..++...|+ +-+.+++.+-.++ .+.++.++..|.++...+
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 333333332 1 11 11344555555678888888886 5788888888888 788888888888888877
Q ss_pred HHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhhC--hhhHhhhhhHHHHHHHHhcCCCCHHHHH
Q 005891 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEAL-HWISTLLNRH--RTEVLHFLNDIFDTLLKALSDPSDEVVL 338 (671)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL-~WL~~L~~~~--p~~i~~~l~~l~p~LL~~LsD~s~eV~~ 338 (671)
.+ ++.+|+...-.++..++..+.-..-..++ .|+..+..+. .++...+..+++..+-+..+..+.++..
T Consensus 150 c~-----~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~ 221 (234)
T PF12530_consen 150 CE-----AEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVAS 221 (234)
T ss_pred HH-----HhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHH
Confidence 73 34578888999999999544332222222 4444444432 2333445556666666666666544333
No 217
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=85.80 E-value=70 Score=36.42 Aligned_cols=145 Identities=16% Similarity=0.186 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhh--cCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-Cch
Q 005891 71 FNQIFDALCKLS--ADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV-PDI 147 (671)
Q Consensus 71 f~eIf~~L~kL~--~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~i-p~~ 147 (671)
...+++.+|.+. +..+..++..-..+|..+. .+..+.-++..+|-.|....... ...+.+-..+.++.+. .+.
T Consensus 174 i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~--y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~ 249 (464)
T PF11864_consen 174 ISSLVDQICTICKSTSSEDDIEACLSVLDAIIT--YGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH 249 (464)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH--cCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH
Confidence 456666666654 3344455555577777655 11122345677776666553322 4445555666666643 344
Q ss_pred hHHhchHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHhh--cCCCCChHH--HHHHHHHhcCCCCHHHHHHHHHH
Q 005891 148 DMLGFLPDFLDGLFNMLSDS----SHEIRQQADSALWEFLQEIK--NSPSVDYGR--MAEILVQRAASPDEFTRLTAITW 219 (671)
Q Consensus 148 ~li~~Lp~fL~gLf~lL~D~----~~eVR~~a~~~L~~ll~~I~--~~~~~d~~~--iI~iLl~~~~s~d~~irl~al~W 219 (671)
..+..|=++|. =.|+ +..+-++|...++.++-.-+ ..|.+.+.. +++-+...++.++..+-.+.+.-
T Consensus 250 ~~i~~L~~iL~-----~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~ 324 (464)
T PF11864_consen 250 SAIRTLCDILR-----SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLL 324 (464)
T ss_pred HHHHHHHHHHc-----ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHH
Confidence 45444444440 0222 23344566788888877662 234445555 99999999998887777777776
Q ss_pred HHHHH
Q 005891 220 INEFV 224 (671)
Q Consensus 220 I~~~~ 224 (671)
+..++
T Consensus 325 i~~ll 329 (464)
T PF11864_consen 325 INRLL 329 (464)
T ss_pred HHHHH
Confidence 76666
No 218
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=85.64 E-value=1e+02 Score=38.10 Aligned_cols=244 Identities=13% Similarity=0.123 Sum_probs=125.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHH---------------HHHHHHHHHHHHhhcC
Q 005891 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFT---------------RLTAITWINEFVKLGG 228 (671)
Q Consensus 164 L~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~i---------------rl~al~WI~~~~~l~~ 228 (671)
--|.+..||.++...|..|+.-+...--.+.-.+++.++.+-.+++.+. .-.++..+..+.--.
T Consensus 482 ~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~a~~~dI~~aVlgll~~~A~kl- 560 (1697)
T KOG3687|consen 482 PLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSLSPPPELEERDVAAYSASLEDIKTAVLGLLVILATKL- 560 (1697)
T ss_pred cccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcccCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh-
Confidence 3466778999999999999987765444567888888888866654321 111111111111100
Q ss_pred cCccc--chHhHHHHHhhh--hcCCcHhHHHHHHHHHHH------HHHhcCC----------------------------
Q 005891 229 DQLVP--YYADILGAILPC--ISDKEEKIRVVARETNEE------LRAIKAD---------------------------- 270 (671)
Q Consensus 229 ~~l~p--flp~LLp~LL~~--Lsd~~~eIR~~A~~~n~~------L~~~i~~---------------------------- 270 (671)
.-+| +--++-..+... +.+..|.|++.+..+.-. +++..+.
T Consensus 561 -~~lP~~ha~~v~~~l~~h~~Lhy~~PKI~~~~s~ir~~~f~~l~llRa~~~Y~lg~Pcn~~~Vv~fspyLGId~pl~p~ 639 (1697)
T KOG3687|consen 561 -YTLPASHATRVYEMLVSHIQLHYKHPKILPIASSIRLQAFDFLFLLRADSLYRLGLPCNKDGVVRFSPYLGIDGPLSPP 639 (1697)
T ss_pred -ccCchHHHHHHHHHHHHhhhhhccCccccchhhHHHHHHHHHHHHHhhcccceecccCCCccEEEeeeeeeecCCCCCC
Confidence 0011 111222233322 335667777666433222 2222111
Q ss_pred -CCCCCChHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhc----------CCCCHHHHH
Q 005891 271 -PADGFDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL----------SDPSDEVVL 338 (671)
Q Consensus 271 -~~~~~dl~~il~~L~~~L~~-~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L----------sD~s~eV~~ 338 (671)
.+..+.+.-+..++.+.+.+ .+|..+.-.+.-+-......-....+-.+++-.+|++.+ .|+.+.+|.
T Consensus 640 ~~p~~i~~~~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~~l~~~~e~fs~~~~h~~V~ 719 (1697)
T KOG3687|consen 640 TGPPVVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSMLRLRGAPEGFSRTDLHLAVV 719 (1697)
T ss_pred CCCCcccHHHHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHHhccCCcccCCccccceeeh
Confidence 01124466677778888864 457777665554444333333333344555555666554 234444555
Q ss_pred HHHHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhHHHHHHHHH--hccCChHHHHHHHHHhhccc-----------
Q 005891 339 LVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRL--CVLLDAERVYRELSTILEGE----------- 403 (671)
Q Consensus 339 ~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~L--c~~L~~E~Iy~~la~iL~~~----------- 403 (671)
=++..|--+.. ..+..+..+..|-+.+ +..-++.-|+.| |.+--+|.+|+.|-+.+..+
T Consensus 720 Pv~~~L~~yh~~lQ~~~~~~~I~~l~q~l------i~~~aSVcv~~lsi~~Lemp~~~~~~LpD~v~Q~t~~s~t~~LaT 793 (1697)
T KOG3687|consen 720 PVLTALISYHNYLQKTKQREMIYCLEQGL------IHRCASVCVVALSICSLEMPDIIIKALPDLVVQLTHISATASLAT 793 (1697)
T ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHH------hhhhHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhhc
Confidence 44444433332 1222334444443322 222234444444 55667789999998887542
Q ss_pred CChhHHHHHHHH
Q 005891 404 ADLDFACTMVQA 415 (671)
Q Consensus 404 ~dl~F~~~mVq~ 415 (671)
.-++|+|.|+..
T Consensus 794 P~leFlS~l~~L 805 (1697)
T KOG3687|consen 794 PLLEFLSTLARL 805 (1697)
T ss_pred ccHHHHHHHHHH
Confidence 347787777653
No 219
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.51 E-value=17 Score=46.28 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=60.8
Q ss_pred hHHHHHHhh---cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 115 FIPLLRERM---NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 115 fIP~L~e~i---~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
|-|+..+.+ .+.++.+|+.++-.+.++.+..|.+.+..+|..+|-|-.++.|.+.+|-..|......+=+..|
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 555555544 5677899999999999999999999999999999999999999999999998775555554444
No 220
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.18 E-value=17 Score=40.26 Aligned_cols=130 Identities=18% Similarity=0.200 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH-HhhcCC--chHHHHHH-HHHHHHHHHhhcc-c-----------ch
Q 005891 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALC-KLSADS--DANVQSAA-HLLDRLVKDIVTE-S-----------DQ 109 (671)
Q Consensus 46 ~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~-kL~~D~--d~~Vr~gA-~~LdrllKdIv~e-~-----------~~ 109 (671)
.-.|.+|++-+..+++.-++.+...+...+..+. +..+|+ +..-|.|| -++..+.-...+. . .+
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 4467889999999987655444333333333322 223343 44667788 3333332211110 1 14
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHH
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L 179 (671)
|-...++|-|. -=....|-.|.-++..+..+.+..+.+ .+..+++.+.++|.+++.-|+.-|..|+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~---~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE---QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH---HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 55566677776 223467899999999999998765543 4556677777799999999999886653
No 221
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=84.88 E-value=68 Score=35.44 Aligned_cols=218 Identities=19% Similarity=0.160 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHHHH------HHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc--chhhhhhh
Q 005891 45 DSRVRYYACEALYNIA------KVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES--DQFSIEEF 115 (671)
Q Consensus 45 d~rVR~~A~eaL~nI~------Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~--~~f~L~~f 115 (671)
|.++-..|...+..+. +....+.. ..+++..+..+.++..+ |+-+ ..|-.+-+.-.... +..-.+.+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~---~~~i~~~i~~l~~~~~~-K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFA---SFIIDHSIESLQNPNSP-KSICTHYLWCLSDQKFSPKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHH---HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCCCcccchhhHHHH
Confidence 7777777766665543 22222221 23566666666555432 2222 12222211111100 11112333
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCC---
Q 005891 116 IPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS--- 191 (671)
Q Consensus 116 IP~L~e~i~-~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~--- 191 (671)
+..+...-. .....+=.-.+..+..+....+..|..+...-++.++.-+-++.++||..|..++......++....
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~ 214 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSK 214 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHH
Confidence 333332221 2333444555566666666666678888888888888888899999999998888888777753210
Q ss_pred ----------C-C--hHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhcCc---CcccchHhHHHHHhhhhcCCcHhHH
Q 005891 192 ----------V-D--YGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLGGD---QLVPYYADILGAILPCISDKEEKIR 254 (671)
Q Consensus 192 ----------~-d--~~~iI~iLl~~~~s~d~~irl~al~-WI~~~~~l~~~---~l~pflp~LLp~LL~~Lsd~~~eIR 254 (671)
. . .+.+.+.|...+.+++.. ..|+. |.. ++.+.+. +--+|+.+.+.+...|...+++.+|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~--~~a~~iW~~-~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k 291 (372)
T PF12231_consen 215 SVLEDLQRSLENGKLIQLYCERLKEMIKSKDEY--KLAMQIWSV-VILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVK 291 (372)
T ss_pred HHHHHhccccccccHHHHHHHHHHHHHhCcCCc--chHHHHHHH-HHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHH
Confidence 0 0 122333344444442211 12333 543 3443332 3456899999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 005891 255 VVARETNEELRAIKA 269 (671)
Q Consensus 255 ~~A~~~n~~L~~~i~ 269 (671)
..|..++..+.....
T Consensus 292 ~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 292 IQAFKAWRRLIYASN 306 (372)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999888554
No 222
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=84.50 E-value=67 Score=35.10 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=130.3
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcch--------hhhhHHHHHHHHHHhhcCCchHHHHHHHHH---
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD--------FIIFFNQIFDALCKLSADSDANVQSAAHLL--- 96 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~--------il~~f~eIf~~L~kL~~D~d~~Vr~gA~~L--- 96 (671)
-|-..++..++.++..=+.+.|.-++....++.+.-.++ +..+.+++++.|+++..++|...--|.-+-
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 456678889999999999999999999888887542221 224448999999999999998766665221
Q ss_pred --HHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch----hHHhchHHHHHHHHHhcCCCChH
Q 005891 97 --DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI----DMLGFLPDFLDGLFNMLSDSSHE 170 (671)
Q Consensus 97 --drllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~----~li~~Lp~fL~gLf~lL~D~~~e 170 (671)
..+++-+.. ++ .+-.+.+.+..++=+|-.-+.+.+..+-..... =+..+.+.|+.-.-+++..+|--
T Consensus 152 k~e~l~~~iL~-~~------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 152 KHESLAKIILY-SE------CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp TSHHHHHHHHT-SG------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred hhHHHHHHHhC-cH------HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 113332222 21 222245666677777777777777765444331 25567888888777899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC----CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 005891 171 IRQQADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (671)
Q Consensus 171 VR~~a~~~L~~ll~~I~~~~----~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~ 227 (671)
+|+.+.+.|++++..=.+.. .++-++-+..+...+.++..-||.+|.+-...|+.-+
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99999999999986432210 2334666778888899999999999999888888754
No 223
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.34 E-value=15 Score=35.15 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=61.8
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhhcC
Q 005891 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D-~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
.-+-.|..|+...||.+-..++..+..+.+-.|..+...+ -+|++.|.+++.+ .+.+|+..+.+.+..-...+++.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3344566788889999999999999999988887654332 3678888899999 89999999999999999888754
No 224
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=84.30 E-value=2.6 Score=38.24 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC
Q 005891 209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 209 d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
...-|..++..|.+++++.|..+..+.|+|..-+..++. .++.|..|.+++..+.+...+
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCH
Confidence 346688899999999999998888899999988888886 567999999999999888764
No 225
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=84.24 E-value=1.4 Score=32.30 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=27.1
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIA 60 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~ 60 (671)
..+|+++..+.+++.+||..|+-++.|++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999986
No 226
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.03 E-value=92 Score=36.27 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHhhc---CcC-----cccchHhHHHHHhhhhcCCcHhHHHHHHHHHH
Q 005891 195 GRMAEILVQRAASP----DEFTRLTAITWINEFVKLG---GDQ-----LVPYYADILGAILPCISDKEEKIRVVARETNE 262 (671)
Q Consensus 195 ~~iI~iLl~~~~s~----d~~irl~al~WI~~~~~l~---~~~-----l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~ 262 (671)
.+++..+...+.++ ++.++.+|+--...++.-. ... .-.|.+.+...+-.+....+.+.+.++.++.+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 34444554444443 4567777766666666521 111 12244555555555555455554555544433
Q ss_pred HHHHhcCCCCCCCChHhHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCC--CCHHHH
Q 005891 263 ELRAIKADPADGFDVGPILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVV 337 (671)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~---~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD--~s~eV~ 337 (671)
. .-...+++.+...+. ......|.+|+..|..++..+|..+.+. +++-..| +.+|||
T Consensus 472 N-----------~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~-------l~~i~~n~~e~~EvR 533 (574)
T smart00638 472 N-----------AGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV-------LLPIYLNRAEPPEVR 533 (574)
T ss_pred c-----------cCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH-------HHHHHcCCCCChHHH
Confidence 2 123455566665554 2346789999999999999998887643 3333333 568899
Q ss_pred HHHHHHHHH
Q 005891 338 LLVLEVHAC 346 (671)
Q Consensus 338 ~~~l~lLa~ 346 (671)
-.|+-+|-+
T Consensus 534 iaA~~~lm~ 542 (574)
T smart00638 534 MAAVLVLME 542 (574)
T ss_pred HHHHHHHHh
Confidence 888766544
No 227
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=83.79 E-value=11 Score=33.99 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 291 EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 291 ~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
.....|..++..+..+.+.+++.+..+.+++...|..++..+ +++..++++|..+..
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999998888876 899999999988873
No 228
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=83.76 E-value=1.5e+02 Score=38.65 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=83.2
Q ss_pred CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005891 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (671)
Q Consensus 228 ~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~ 307 (671)
+..+..|+|.++...-.+|...++.++..+......+...... ..-++|+..|..+..+.+....-+||.-|..|+
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~ 501 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELA 501 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4456779999999999999999999999998887777665521 112689999988887666666779999999999
Q ss_pred hhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 308 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 308 ~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
...++.+.+|...+-+ +|..+.+=++.=+.+...+++.++
T Consensus 502 ~~~~~~l~~fa~~l~g-iLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 502 EKNPSELQPFATFLKG-ILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp HH-HHHHHHTHHHHHG-GGGGGGG--HHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9999999887554433 556666655433444566766665
No 229
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=83.50 E-value=1.1e+02 Score=36.79 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=76.5
Q ss_pred CChHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHh
Q 005891 192 VDYGRMAEILVQRA----ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (671)
Q Consensus 192 ~d~~~iI~iLl~~~----~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~ 267 (671)
.|++++++.-.+++ +..++.+--.++.-++.++..-.-.++- -...++.+.+.|. -+++|.+|+.|.-....-
T Consensus 185 ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl~--ieelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 185 NDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFLN--IEELRIAACNCILAIVSK 261 (980)
T ss_pred hhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhc
Confidence 35666665443332 2236665555555444444432222221 2344555555555 577899898876554433
Q ss_pred cCCCCCCCChHhHHHHHHHhc-----------CCCcHHHHHHHHH----------HH---HHHHhhChhhHhhhhhHHHH
Q 005891 268 KADPADGFDVGPILSIATRQL-----------SSEWEATRIEALH----------WI---STLLNRHRTEVLHFLNDIFD 323 (671)
Q Consensus 268 i~~~~~~~dl~~il~~L~~~L-----------~~~~~~tRiaaL~----------WL---~~L~~~~p~~i~~~l~~l~p 323 (671)
..++-+.+ ++++.|.+.+ .+.+.-.|.+.|- |= ..+-.....+....+-.++|
T Consensus 262 kMkP~dKL---~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vp 338 (980)
T KOG2021|consen 262 KMKPMDKL---ALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVP 338 (980)
T ss_pred CCChhHHH---HHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHH
Confidence 22322222 2333331111 1223334555441 10 11111122344455556899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 324 TLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 324 ~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
.++..|+|+.+++-.+....|+.+-
T Consensus 339 yllq~l~~e~ddit~~ifpFlsdyl 363 (980)
T KOG2021|consen 339 YLLQFLNNEFDDITAKIFPFLSDYL 363 (980)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHH
Confidence 9999999999998887777666554
No 230
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=83.22 E-value=81 Score=35.01 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=30.1
Q ss_pred cccchHhHHHHHhhhhc--CCcHhHHHHHHHHHHHHHHhcC
Q 005891 231 LVPYYADILGAILPCIS--DKEEKIRVVARETNEELRAIKA 269 (671)
Q Consensus 231 l~pflp~LLp~LL~~Ls--d~~~eIR~~A~~~n~~L~~~i~ 269 (671)
..-++.-++|.+++|+- ++++.+|..|.+....+.+...
T Consensus 250 ~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 250 ILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 34467788888888765 6688999999998887777665
No 231
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=83.17 E-value=29 Score=41.88 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=100.1
Q ss_pred HHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhcCCC-CH
Q 005891 134 LVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV--DYGRMAEILVQRAASP-DE 210 (671)
Q Consensus 134 alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~--d~~~iI~iLl~~~~s~-d~ 210 (671)
+++..+.+.-....++-.+-.+||.-+-++|.+++.+++..+++++..|+..-++.|.. .++.+++.+-+.+++. ++
T Consensus 76 amea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~ 155 (819)
T KOG1877|consen 76 AMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDD 155 (819)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccch
Confidence 34455555544555565667778888888999999999999999999999766655443 4788999888887773 33
Q ss_pred HH----------HHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCc--------HhH----HHH--------HHH
Q 005891 211 FT----------RLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKE--------EKI----RVV--------ARE 259 (671)
Q Consensus 211 ~i----------rl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~--------~eI----R~~--------A~~ 259 (671)
.. -+.++.|..++.++.+..--+ +..+++|.++-.+...+ -++ +.. +.-
T Consensus 156 ~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~~p~vl 235 (819)
T KOG1877|consen 156 DMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTSDPKVL 235 (819)
T ss_pred hhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCcccCcchh
Confidence 22 255677998888776543222 47778887777665332 111 000 111
Q ss_pred HHHHHHHhcCCCCCCCChHhHHHHHHHhcC
Q 005891 260 TNEELRAIKADPADGFDVGPILSIATRQLS 289 (671)
Q Consensus 260 ~n~~L~~~i~~~~~~~dl~~il~~L~~~L~ 289 (671)
+...+.++.+....+.++..+++-+..++.
T Consensus 236 a~~cl~~l~~~A~~g~~iR~~l~pl~~~~d 265 (819)
T KOG1877|consen 236 AERCLRELLGRAKFGTNIRNALKPLLSHLD 265 (819)
T ss_pred HHHHHHHhhccccccchHHHHHHHHHhccc
Confidence 223344444443445567888888888875
No 232
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=81.83 E-value=82 Score=34.14 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhChhhHh-hhh--hHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hc--------cchHH-HHHHH
Q 005891 294 ATRIEALHWISTLLNRHRTEVL-HFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIA-KD--------LQHFR-QLVVF 360 (671)
Q Consensus 294 ~tRiaaL~WL~~L~~~~p~~i~-~~l--~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is-~~--------~~~F~-~fm~~ 360 (671)
.+|-+.++.+..+....+..+. ..+ .+++..+++.|.+.+++++...++++.+-. .+ -..|. .++..
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 6899999877777776655442 222 345899999999999999999999887543 32 23443 47888
Q ss_pred HHhhccccch----hhhhHHHHHHHHHhcc
Q 005891 361 LVHNFRVDNS----LLEKRGALIIRRLCVL 386 (671)
Q Consensus 361 LL~lf~~d~~----lLe~Rg~~IIR~Lc~~ 386 (671)
|..++..+.. -+.+..--....+|..
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 8887765544 3333333455555543
No 233
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.68 E-value=1.4e+02 Score=36.78 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---hcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC
Q 005891 195 GRMAEILVQRAASPDEFTRLTAITWINEFVK---LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (671)
Q Consensus 195 ~~iI~iLl~~~~s~d~~irl~al~WI~~~~~---l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~ 271 (671)
.+|+...+..+.+++-.+|+.|+.-+.--.. -.++.++|-.....|.+..++.+.+|-+-..|.++...+....++.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 4555666667788888999999887754333 3566788888899999999999999998888888887776665531
Q ss_pred CCCCChHhHHHHHHHhcCC
Q 005891 272 ADGFDVGPILSIATRQLSS 290 (671)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~ 290 (671)
-..--..+++|.+...+.+
T Consensus 882 v~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 1111236777777766654
No 234
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.49 E-value=81 Score=36.70 Aligned_cols=131 Identities=19% Similarity=0.159 Sum_probs=72.9
Q ss_pred hhhHHHHHHhhcC----CCHHHHHHHHHHHHHhhc-CC-ch------hHHhchHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005891 113 EEFIPLLRERMNV----LNPYVRQFLVGWITVLDS-VP-DI------DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (671)
Q Consensus 113 ~~fIP~L~e~i~~----~np~vR~~alswL~~L~~-ip-~~------~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~ 180 (671)
...+..+.+.+.+ .++.+|..++-....+.. .. .. -.-.++|.+...|-...++.+.+.+....
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L---- 467 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYL---- 467 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHH----
Confidence 4444444444442 467888888777775543 11 11 12345555555555555556666555444
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc--CCcHhHHH
Q 005891 181 EFLQEIKNSPSVDYGRMAEILVQRAA---SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS--DKEEKIRV 255 (671)
Q Consensus 181 ~ll~~I~~~~~~d~~~iI~iLl~~~~---s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls--d~~~eIR~ 255 (671)
+.+|+. ..+..++.+...+. .....+|..|+..+..+....+... -+.+++... ..++|+|-
T Consensus 468 ---kaLGN~---g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v-------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 468 ---KALGNA---GHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV-------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred ---Hhhhcc---CChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH-------HHHHHHHHcCCCCChHHHH
Confidence 444442 22344444444333 3357899999999987776665443 333444333 34678998
Q ss_pred HHHHH
Q 005891 256 VARET 260 (671)
Q Consensus 256 ~A~~~ 260 (671)
+|.-+
T Consensus 535 aA~~~ 539 (574)
T smart00638 535 AAVLV 539 (574)
T ss_pred HHHHH
Confidence 88644
No 235
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.44 E-value=94 Score=36.61 Aligned_cols=229 Identities=15% Similarity=0.115 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHH
Q 005891 132 QFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF 211 (671)
Q Consensus 132 ~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~ 211 (671)
+.++++...|.... ....|...++..+..+++|+...|+.++|+++..+.. ++..-.
T Consensus 303 ~vav~c~~~Ll~a~--pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~---------------------~D~~g~ 359 (704)
T KOG2153|consen 303 QVAVQCACELLEAV--PHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFE---------------------NDNGGS 359 (704)
T ss_pred HHHHHHHHHHHHhh--hhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhc---------------------CCCccc
Confidence 44556666554322 1355677888999999999999999999998888775 122244
Q ss_pred HHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHH---HH-----HHHH-------------HhcC-
Q 005891 212 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARE---TN-----EELR-------------AIKA- 269 (671)
Q Consensus 212 irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~---~n-----~~L~-------------~~i~- 269 (671)
+.+.++.|+..+++-- -.++.|.++..++..=.+.+......... .+ .... .-+.
T Consensus 360 ~sl~~Vr~i~~llK~r---n~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~r 436 (704)
T KOG2153|consen 360 GSLAIVRIINSLLKTR---NYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIER 436 (704)
T ss_pred hhHHHHHHHHHHhhhh---cccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 6677778887666543 34567777777765433332111111000 00 0000 0000
Q ss_pred C--CCCC--------CChHhHHHHHHH----hcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC--
Q 005891 270 D--PADG--------FDVGPILSIATR----QLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-- 333 (671)
Q Consensus 270 ~--~~~~--------~dl~~il~~L~~----~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s-- 333 (671)
+ ++++ ....++++++-. -+.++....=-+++.-+..+.+...-++..-+..++-.++..-.-..
T Consensus 437 E~reaea~e~aeek~k~~sEiLkiVFtiYFrILkn~~~tll~~vlEGlakf~h~invef~~dll~vlk~ll~d~~~~~re 516 (704)
T KOG2153|consen 437 EMREAEAEESAEEKMKKQSEILKIVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFLGDLLKVLKELLEDIELSYRE 516 (704)
T ss_pred HhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHhhhHHHHHHHHHHhhhHHHHH
Confidence 0 0111 112344443332 23333222233444555555555555555555555555555442233
Q ss_pred -HHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhc---cccchhhhhHHHHHHHHHhccCCh
Q 005891 334 -DEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNF---RVDNSLLEKRGALIIRRLCVLLDA 389 (671)
Q Consensus 334 -~eV~~~~l~lLa~Is~-~~~~F~~fm~~LL~lf---~~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (671)
..-|..+..+++..+. -.-.|..|++.|-.++ ..+.. .-|..||-++-..+..
T Consensus 517 ~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~~~~~~~~---~~~~~~ilr~~d~~~~ 574 (704)
T KOG2153|consen 517 ALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLFPMNLGPD---DDGFAIILRLLDPLLI 574 (704)
T ss_pred HHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhcccccCCC---cchHHHHHHHhhHhhh
Confidence 3445566666665553 2345666666666644 22221 1156666666665543
No 236
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.26 E-value=23 Score=33.66 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=57.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCC------CChHHHHHHHHHHHHHHHHhhcC
Q 005891 118 LLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 118 ~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D------~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
.|..|+...||.+-..+++.+..+.+-.|..+-..+ -+|+..|.+++++ ++.+||..+.+.+..-...+++.
T Consensus 42 ai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 121 (139)
T cd03567 42 LLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHE 121 (139)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 356678889999999999999999888887765444 3567778778853 67899999999999988888643
No 237
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.10 E-value=1.6e+02 Score=38.18 Aligned_cols=210 Identities=15% Similarity=0.100 Sum_probs=134.5
Q ss_pred HHHHHhhhhhHHhHhhhHHHHHhccC------CCCHHHHHHHHHHHHHHHHH----hcchhhhhHHHHHHHHHHhhcCCc
Q 005891 17 LLYADLFFYSETILQQIVPPVLNSFS------DQDSRVRYYACEALYNIAKV----VRGDFIIFFNQIFDALCKLSADSD 86 (671)
Q Consensus 17 ~~~~~~~~~~~~yl~~Ii~pvL~~l~------D~d~rVR~~A~eaL~nI~Kv----~~~~il~~f~eIf~~L~kL~~D~d 86 (671)
..++-++.+ ..|.+...+-+.=+.. +.-..-|- -++|+++.. .++-+.+||.-+++.....+.--+
T Consensus 1374 v~~v~klse-~~FRplf~~l~~WA~~~~~~~a~~~~~~Rl---i~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n 1449 (1621)
T KOG1837|consen 1374 VAKVLKLSE-STFRPLFSPLFDWAEPGLEAKAEQKCLERL---ISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKKIN 1449 (1621)
T ss_pred HHHHHHhhH-HHHHHHHHHHHHhcccCCccccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 467777777 6777777777766662 22233333 256666543 344556888777766554443222
Q ss_pred hH------------HH-HHH--HHHHHHHHHhhccc-------chhhhhhhHHHHHHhhc--CCCH---HHHHHHHHHHH
Q 005891 87 AN------------VQ-SAA--HLLDRLVKDIVTES-------DQFSIEEFIPLLRERMN--VLNP---YVRQFLVGWIT 139 (671)
Q Consensus 87 ~~------------Vr-~gA--~~LdrllKdIv~e~-------~~f~L~~fIP~L~e~i~--~~np---~vR~~alswL~ 139 (671)
.+ .| ..+ .+.-..++|+.... ....--...|.+.+..+ ...+ .|-..++..+.
T Consensus 1450 ~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~ 1529 (1621)
T KOG1837|consen 1450 ASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIA 1529 (1621)
T ss_pred hhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 22 12 111 12233344433210 01122334566666665 2333 45577888888
Q ss_pred HhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005891 140 VLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITW 219 (671)
Q Consensus 140 ~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~W 219 (671)
......+.+ ++.+...+.+-..|+++.+|-.|...+..+...+|...-+.++..||.+-+-+.+.++++...|-.-
T Consensus 1530 ~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~l 1605 (1621)
T KOG1837|consen 1530 SDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKL 1605 (1621)
T ss_pred hhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHH
Confidence 888887777 4555555555788999999999999999999999875556689999999999999999888888778
Q ss_pred HHHHHhhcCcCcccc
Q 005891 220 INEFVKLGGDQLVPY 234 (671)
Q Consensus 220 I~~~~~l~~~~l~pf 234 (671)
++.+-+..|+.+..|
T Consensus 1606 i~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1606 IRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHhchhhhhc
Confidence 887777778755443
No 238
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=79.70 E-value=95 Score=33.53 Aligned_cols=178 Identities=13% Similarity=0.087 Sum_probs=115.9
Q ss_pred HHHHHHHHhhcCCc-hHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 005891 73 QIFDALCKLSADSD-ANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (671)
Q Consensus 73 eIf~~L~kL~~D~d-~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li 150 (671)
.+...|.+++.-.= ..|-.-| +..+.+.+-+-.+.=..++.-+.|-|...+....-.||-.++..+....--.+..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 45555655554322 2444444 444444443332222356778888899999888899999999999866533344999
Q ss_pred hchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC--
Q 005891 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-- 228 (671)
Q Consensus 151 ~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~-- 228 (671)
+.++.++-+++--+.|.+.|+-..+.+.++.+...++.. .+...+-.++- ..+..|.-|+.|+..-..-..
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~ 206 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQND 206 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCccccc
Confidence 999999999999999999999999999999999877641 33333333322 367789999999965333211
Q ss_pred ---------cCcc-cchHhHHHHHhhhhcCCcHhHHHHH
Q 005891 229 ---------DQLV-PYYADILGAILPCISDKEEKIRVVA 257 (671)
Q Consensus 229 ---------~~l~-pflp~LLp~LL~~Lsd~~~eIR~~A 257 (671)
..++ |--.-++.++..++.|++-=|+..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~ 245 (307)
T PF04118_consen 207 ELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGF 245 (307)
T ss_pred ccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHH
Confidence 0112 2233345677777777755555444
No 239
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.36 E-value=4.8 Score=40.86 Aligned_cols=91 Identities=22% Similarity=0.307 Sum_probs=69.4
Q ss_pred hHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-
Q 005891 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL- 226 (671)
Q Consensus 148 ~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l- 226 (671)
+.-.|||.|.+||.. .+..-|-.|.+.+.+++..-+++...-++.+|.-|-..+.+.|.++...++..|..++-.
T Consensus 111 dy~~yLp~F~dGL~e----~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 111 DYCPYLPLFFDGLAE----TDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred cchHHHHHHhhhhhh----cCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 467799999998764 444455666666777776666544455888999999999999999888888777776655
Q ss_pred --cCcCcccchHhHHHHH
Q 005891 227 --GGDQLVPYYADILGAI 242 (671)
Q Consensus 227 --~~~~l~pflp~LLp~L 242 (671)
-|..++||.-+++|.+
T Consensus 187 ~~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 187 GCVGAALVPFYRQLLPVL 204 (262)
T ss_pred cccchhhhhHHHHhhhhh
Confidence 4688999999999965
No 240
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=79.18 E-value=2.4 Score=30.25 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=26.0
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIA 60 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~ 60 (671)
.+++++.+++..+.+++.+|+.++.||+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 7888999999999999999999999986
No 241
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=78.81 E-value=5.6 Score=37.01 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCc-----------HhHHHHHHHHH
Q 005891 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE-----------EKIRVVARETN 261 (671)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~-----------~eIR~~A~~~n 261 (671)
++..++.+|..+++++++-|++.|+..|..++.-++..|..++-+=...|-.+..+.. ..||..|.++.
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999988888777777777776665432 36898888877
Q ss_pred HHHH
Q 005891 262 EELR 265 (671)
Q Consensus 262 ~~L~ 265 (671)
..+.
T Consensus 115 ~~if 118 (122)
T cd03572 115 KAIF 118 (122)
T ss_pred HHHh
Confidence 6543
No 242
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=78.56 E-value=1.2e+02 Score=34.05 Aligned_cols=264 Identities=14% Similarity=0.144 Sum_probs=132.3
Q ss_pred HHHHHHhhcCCchHHHH-HHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHhc
Q 005891 75 FDALCKLSADSDANVQS-AAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGF 152 (671)
Q Consensus 75 f~~L~kL~~D~d~~Vr~-gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~li~~ 152 (671)
+....+++.+.+.-..+ ++..+..+.+---...+...++.+...|.+.+.. .+++.+++++.++..+..++..-..-.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence 56667888888876666 5566666555222222223466777788888876 889999999999999888776432111
Q ss_pred h----HHHHHHHHHhcCCCChHHHHHHHHHHHHHH------HHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005891 153 L----PDFLDGLFNMLSDSSHEIRQQADSALWEFL------QEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWIN 221 (671)
Q Consensus 153 L----p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll------~~I~~~~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~ 221 (671)
. ..++..|. -+-.+-.+.=..+-|+-.+. +.++. .+ ++.+..++-++.. +-|-+-++..+.
T Consensus 196 ~adg~~~l~~~l~--s~~~~~QlQYqsifciWlLtFn~~~ae~~~~---~~li~~L~~Ivk~~~K---EKV~Rivlai~~ 267 (442)
T KOG2759|consen 196 IADGVSLLIRILA--STKCGFQLQYQSIFCIWLLTFNPHAAEKLKR---FDLIQDLSDIVKESTK---EKVTRIVLAIFR 267 (442)
T ss_pred ecCcchhhHHHHh--ccCcchhHHHHHHHHHHHhhcCHHHHHHHhh---ccHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 1 11111110 01111122222222222211 11110 11 2222222222221 222222444444
Q ss_pred HHHhhcCcC----------cccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC-------------------C-
Q 005891 222 EFVKLGGDQ----------LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD-------------------P- 271 (671)
Q Consensus 222 ~~~~l~~~~----------l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~-------------------~- 271 (671)
+++.-+++. +..-.|+.+..+.. =.+++++++.--...-..|-+.+.+ +
T Consensus 268 Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~-rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~ 346 (442)
T KOG2759|consen 268 NLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE-RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPV 346 (442)
T ss_pred HHhccCchhhHHHHHHHHHHhcCchHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcc
Confidence 444443211 01112333332222 2466766665433222222222111 0
Q ss_pred --CCC-C---------ChHhHHHHHHHhcCCCcHHHH-HHHHHHHHHHHhhChhhHh--hhhhHHHHHHHHhcCCCCHHH
Q 005891 272 --ADG-F---------DVGPILSIATRQLSSEWEATR-IEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEV 336 (671)
Q Consensus 272 --~~~-~---------dl~~il~~L~~~L~~~~~~tR-iaaL~WL~~L~~~~p~~i~--~~l~~l~p~LL~~LsD~s~eV 336 (671)
.++ | +=-+++.+|...+..++.+.- --|..=++++.+.+|++-. ..+ +--..+++.++.++|+|
T Consensus 347 Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~-ggKe~vM~Llnh~d~~V 425 (442)
T KOG2759|consen 347 HKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY-GGKERVMNLLNHEDPEV 425 (442)
T ss_pred ccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh-chHHHHHHHhcCCCchH
Confidence 011 1 124788899999986654332 2234568899999988643 111 12356788899999999
Q ss_pred HHHHHHHHHHHh
Q 005891 337 VLLVLEVHACIA 348 (671)
Q Consensus 337 ~~~~l~lLa~Is 348 (671)
+..|+.+..++-
T Consensus 426 ry~ALlavQ~lm 437 (442)
T KOG2759|consen 426 RYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHHH
Confidence 999998776543
No 243
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.51 E-value=1e+02 Score=39.93 Aligned_cols=155 Identities=17% Similarity=0.094 Sum_probs=96.5
Q ss_pred hhhhhhHHHHHHhh-cCCCHHHHHHHHHHHHHhh--cCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 110 FSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLD--SVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 110 f~L~~fIP~L~e~i-~~~np~vR~~alswL~~L~--~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
.-...|+-.+.... .+.++.+|..+++.+..+. ..-+ ..-....++-.-++..+.|...+||+.|..||..+++.=
T Consensus 1522 ~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1522 HLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred hhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence 34566666666433 3477899999888777432 1111 223455678888899999999999999999999998733
Q ss_pred hcCCCCChHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 187 KNSPSVDYGRMAEILVQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~--d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
+- ....+.........+++ ++...-.|...++.++-..|-++=-|+|+.+..+-....++ .-|+.++.++..++
T Consensus 1601 ~~---~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseF 1676 (1710)
T KOG1851|consen 1601 KF---QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEF 1676 (1710)
T ss_pred cc---ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHH
Confidence 21 11122333333333322 34444556667777777666554335666665555544454 56888888888777
Q ss_pred HHhcC
Q 005891 265 RAIKA 269 (671)
Q Consensus 265 ~~~i~ 269 (671)
.+.-.
T Consensus 1677 rrth~ 1681 (1710)
T KOG1851|consen 1677 RRTHA 1681 (1710)
T ss_pred HHHhh
Confidence 66544
No 244
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=78.14 E-value=1.2e+02 Score=35.09 Aligned_cols=147 Identities=17% Similarity=0.244 Sum_probs=93.5
Q ss_pred hhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcC--------CCHHHHHHHHHH
Q 005891 66 DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV--------LNPYVRQFLVGW 137 (671)
Q Consensus 66 ~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~--------~np~vR~~alsw 137 (671)
|...||++|..++.. .++.-|..| | .++-+++ .+..++|.+..+|.. .|-..=..++..
T Consensus 204 ElQlYy~~It~a~~g----~~~~~r~eA--L----~sL~TDs---GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m 270 (576)
T KOG2549|consen 204 ELQLYYKEITEACTG----SDEPLRQEA--L----QSLETDS---GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRM 270 (576)
T ss_pred HHHHHHHHHHHHHhc----CCHHHHHHH--H----HhhccCc---cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHH
Confidence 455788998888754 444445544 2 2344444 477777777777753 122333455566
Q ss_pred HHHhhcCCchhHHhchHHHHHHHHHhc----------CCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCC
Q 005891 138 ITVLDSVPDIDMLGFLPDFLDGLFNML----------SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS 207 (671)
Q Consensus 138 L~~L~~ip~~~li~~Lp~fL~gLf~lL----------~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s 207 (671)
+.-|..-|...+-+|+..+++.+..++ .|.+-.+|.-|...+..+++.++.....=...|+..+.....+
T Consensus 271 ~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D 350 (576)
T KOG2549|consen 271 VRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLD 350 (576)
T ss_pred HHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 666777788888899999998886332 3445679999999999999988642111135677777777666
Q ss_pred C--CHHHHHHHHHHHHHHHh
Q 005891 208 P--DEFTRLTAITWINEFVK 225 (671)
Q Consensus 208 ~--d~~irl~al~WI~~~~~ 225 (671)
. .+-...-|+.-+.+|-.
T Consensus 351 ~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 351 NKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred CCCCchhhhhHHHHHHHhhh
Confidence 5 24445556665555443
No 245
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=76.89 E-value=1.3e+02 Score=33.44 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=88.2
Q ss_pred chHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhhcC---CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 005891 152 FLPDFLDGLFN-MLSDSSHEIRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (671)
Q Consensus 152 ~Lp~fL~gLf~-lL~D~~~eVR~~a~~~L~~ll~~I~~~---~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~ 227 (671)
.+..+.+.+.. +++|+ ++||.++-..+.-++..-..- ...+++.+|-.-+..- .+++.-|..|+..++.|+++.
T Consensus 22 ~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~-~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRD-NKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred hHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhccc-CCChHHHHHHHHHHHHHHHhc
Confidence 34445555554 45555 999999988887666422110 0012222222222221 234667889999999999993
Q ss_pred --CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005891 228 --GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIST 305 (671)
Q Consensus 228 --~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~ 305 (671)
+.. +-..++..+.....+.++..|.+|.++.-++.=.-.+ -+--..-+.++.+.+.+.....-.+++.++..
T Consensus 100 ~~~~~---~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 100 KGPKE---IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLY 173 (371)
T ss_pred CCccc---CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 333 3567778888888888899999998876665422110 00001223444444444334466777788888
Q ss_pred HHhhCh
Q 005891 306 LLNRHR 311 (671)
Q Consensus 306 L~~~~p 311 (671)
+.+.-.
T Consensus 174 lLd~p~ 179 (371)
T PF14664_consen 174 LLDSPR 179 (371)
T ss_pred HhCCcc
Confidence 777643
No 246
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=76.75 E-value=46 Score=41.16 Aligned_cols=125 Identities=18% Similarity=0.145 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHH
Q 005891 217 ITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATR 296 (671)
Q Consensus 217 l~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR 296 (671)
+..+...+-..|.++.||...++-.++|.|.++..|--........++.+...++ .+-.+.+-.++. .+...|
T Consensus 126 i~li~~yiv~Lg~~vr~~~~~i~isLLpg~e~es~e~~~l~~hLi~tl~k~L~d~--~~fw~~~w~ill-----~~~~~R 198 (1618)
T COG5221 126 IDLIERYIVPLGKDVRSYCTSILISLLPGMEFESGEYYSLRAHLIITLFKSLIDP--DVFWSSMWGILL-----NDERLR 198 (1618)
T ss_pred HHHHHhheeecCccHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHh-----cCcccc
Confidence 4444444445678999999999999999999877665554444455565555431 122344444332 234468
Q ss_pred HHHHHHHHHHHhhC-----hh-hHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 297 IEALHWISTLLNRH-----RT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 297 iaaL~WL~~L~~~~-----p~-~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
..++.|+..--... .+ -+.||-.-++-.+..+++|++-.|+...+.+|-..=
T Consensus 199 ~g~l~~l~reeNNdsh~d~~~rlI~p~~gL~VR~l~a~l~dndiLV~R~~lDlLl~~f 256 (1618)
T COG5221 199 TGVLNSLMREENNDSHMDWSERLILPHAGLMVRALCAGLGDNDILVVRNCLDLLLFVF 256 (1618)
T ss_pred chHHHHHHHHhcCcchhchhhhccCCCcchhHHHHHhhcCCCceeeehhHHHHHHHHc
Confidence 88888888733321 12 367888889999999999999899999998876665
No 247
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=76.51 E-value=11 Score=34.20 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=54.8
Q ss_pred HhcCCCC--h--HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC--CHHHHHHHHH-HHHHHHhhcCcCcccc
Q 005891 162 NMLSDSS--H--EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP--DEFTRLTAIT-WINEFVKLGGDQLVPY 234 (671)
Q Consensus 162 ~lL~D~~--~--eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~--d~~irl~al~-WI~~~~~l~~~~l~pf 234 (671)
..+.|+. + .-|+.+..+++.+++..+ ..+....|.+..++++. .++.|..|+. |-.-+..+.++++-|.
T Consensus 18 ~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g----~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~l 93 (107)
T smart00802 18 NILHDSSGKKPYNEKKRALRSIGFLIKLMG----KHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPL 93 (107)
T ss_pred HHHcCcccCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4556655 3 448888999999998666 34555555555555443 5679999988 5544444566677778
Q ss_pred hHhHHHHHhhhh
Q 005891 235 YADILGAILPCI 246 (671)
Q Consensus 235 lp~LLp~LL~~L 246 (671)
+..++..+++..
T Consensus 94 l~~~~~~i~~~~ 105 (107)
T smart00802 94 LDQIFAAILPLW 105 (107)
T ss_pred HHHHHHHHHHhc
Confidence 888888877754
No 248
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=76.38 E-value=20 Score=35.62 Aligned_cols=153 Identities=20% Similarity=0.145 Sum_probs=82.4
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHH-HHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhh
Q 005891 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFN-QIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEF 115 (671)
Q Consensus 37 vL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~-eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~f 115 (671)
+.....+...+.|+.|+..+....+ .++ +.++.+-+.+.+.+. .+ ..|.++..+++.... .-+.+
T Consensus 56 ~~~L~~~~~~E~~~la~~il~~~~~--------~~~~~~~~~~~~~~~~~~~----W~-~~D~~~~~~~~~~~~-~~~~~ 121 (213)
T PF08713_consen 56 ADELWESGYREERYLALLILDKRRK--------KLTEEDLELLEKWLPDIDN----WA-TCDSLCSKLLGPLLK-KHPEA 121 (213)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCGG--------G--HHHHHHHHHCCCCCCC----HH-HHHHHTHHHHHHHHH-HHGGH
T ss_pred HHHHcCCchHHHHHHHHHHhHHHhh--------hhhHHHHHHHHHHhccCCc----ch-hhhHHHHHHHHHHHH-hhHHH
Confidence 4444566667777766655422111 111 235555555554332 11 223333323221000 11678
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChH
Q 005891 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYG 195 (671)
Q Consensus 116 IP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~ 195 (671)
.|.+.+-+.+.|+.+|.+++..+...... .+++.+++.+-..+.|+..-||+++.-+| .+++. .|-+
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L----~~~~~---~~~~ 188 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWAL----REIGK---KDPD 188 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHH----HHHCT---T-HH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHH----HHHHH---hCHH
Confidence 99999999999999988875443222111 67788888888899999999999875544 44443 4556
Q ss_pred HHHHHHHHhcCCCCHHHHHHH
Q 005891 196 RMAEILVQRAASPDEFTRLTA 216 (671)
Q Consensus 196 ~iI~iLl~~~~s~d~~irl~a 216 (671)
.+.++|-++...-...+...|
T Consensus 189 ~v~~~l~~~~~~~~~~~~r~A 209 (213)
T PF08713_consen 189 EVLEFLQKNSDRLSRWTLRYA 209 (213)
T ss_dssp HHHHHHHHS-----HHHHHHH
T ss_pred HHHHHHHHCcccCchhHHHHH
Confidence 666676664433333443333
No 249
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.32 E-value=32 Score=32.36 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=60.3
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCCCCh--H--HHHHHHHHHHHHHHH
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSH--E--IRQQADSALWEFLQE 185 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D~~~--e--VR~~a~~~L~~ll~~ 185 (671)
....+-.|..++...||.+...++..+..+.+-.|..+...+ .+|++.|.+++.++.. . ||+.+.+.+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 344556677888899999999999999999988887665443 4688888887766433 2 899999999999988
Q ss_pred hhc
Q 005891 186 IKN 188 (671)
Q Consensus 186 I~~ 188 (671)
++.
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 854
No 250
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=76.31 E-value=73 Score=34.27 Aligned_cols=130 Identities=18% Similarity=0.254 Sum_probs=70.7
Q ss_pred cchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcC------CCHHHHHHHHHH
Q 005891 64 RGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV------LNPYVRQFLVGW 137 (671)
Q Consensus 64 ~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~------~np~vR~~alsw 137 (671)
..+.-.||+.++.+| +...+...|.|| |..+ -.++ .+.+++|.+...+.+ .|-.+-..++..
T Consensus 192 sKELq~YF~kvisal---~dEs~~~~r~aA--l~sL----r~ds---GlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m 259 (450)
T COG5095 192 SKELQMYFDKVISAL---LDESDEQTRDAA--LESL----RNDS---GLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMM 259 (450)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHh----ccCc---cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345567899988887 455667778877 2222 2223 344455544444431 334444455555
Q ss_pred HHHhhcCCchhHHhchHHHHHHH----H-HhcCCCChH-----HHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc
Q 005891 138 ITVLDSVPDIDMLGFLPDFLDGL----F-NMLSDSSHE-----IRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA 205 (671)
Q Consensus 138 L~~L~~ip~~~li~~Lp~fL~gL----f-~lL~D~~~e-----VR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~ 205 (671)
...+.+-+.+=+-+|+..+++.+ . +-|+....+ +|..|...++-.++.+++....=-+.+...++...
T Consensus 260 ~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKaf 337 (450)
T COG5095 260 YSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAF 337 (450)
T ss_pred HHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHH
Confidence 55555555443444555544444 3 234333333 99999888888888776421111244555555443
No 251
>PF14750 INTS2: Integrator complex subunit 2
Probab=76.23 E-value=2.2e+02 Score=35.94 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHH------HHHHHHh-hccchHHHHHHHHHhhc---cccchhhhhHHHHHHHHHhccC
Q 005891 320 DIFDTLLKALSDP--SDEVVLLVL------EVHACIA-KDLQHFRQLVVFLVHNF---RVDNSLLEKRGALIIRRLCVLL 387 (671)
Q Consensus 320 ~l~p~LL~~LsD~--s~eV~~~~l------~lLa~Is-~~~~~F~~fm~~LL~lf---~~d~~lLe~Rg~~IIR~Lc~~L 387 (671)
.+++.++..|-+- -.+|+...+ +++.++. .+.+.|+.++..|+..- ..+...-..| +.+++.||..=
T Consensus 149 ~il~i~~~~lPslL~i~~v~~aLL~v~nGp~li~~LvaN~Pd~f~~vv~~LI~~~e~~de~s~~gr~R-~~~L~~L~~m~ 227 (1049)
T PF14750_consen 149 DILCIAQAELPSLLPIEEVVEALLHVPNGPWLICRLVANMPDSFEEVVNSLISNGERQDEESSRGRQR-NETLRKLCKMN 227 (1049)
T ss_pred HHHHHHHHhCcccCCHHHHHHHHHcccccHHHHHHHHhcCchhHHHHHHHHHhccccccccccchHHH-HHHHHHHHHhC
Confidence 3455555555432 234554444 6777766 56788999999999754 2222222334 77999999865
Q ss_pred Ch
Q 005891 388 DA 389 (671)
Q Consensus 388 ~~ 389 (671)
+.
T Consensus 228 Ps 229 (1049)
T PF14750_consen 228 PS 229 (1049)
T ss_pred hH
Confidence 44
No 252
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=75.88 E-value=34 Score=39.40 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=98.8
Q ss_pred hHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC--------HHHHHHHHHH
Q 005891 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--------EFTRLTAITW 219 (671)
Q Consensus 148 ~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d--------~~irl~al~W 219 (671)
++.-|+.++.. .+.+.++.-|+.|-+ .+.. +.-+..++|+++.++...- -+.-.+.+..
T Consensus 204 ElQlYy~~It~----a~~g~~~~~r~eAL~-------sL~T--DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m 270 (576)
T KOG2549|consen 204 ELQLYYKEITE----ACTGSDEPLRQEALQ-------SLET--DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRM 270 (576)
T ss_pred HHHHHHHHHHH----HHhcCCHHHHHHHHH-------hhcc--CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHH
Confidence 45556666666 444577777876643 3332 1237788888888775431 1122234444
Q ss_pred HHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHH
Q 005891 220 INEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEA 299 (671)
Q Consensus 220 I~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaa 299 (671)
+..+.+-..-.+-||+-.++|.++.|+....-- ..+ ..+.+|..|--|
T Consensus 271 ~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~----------------~~p----------------~~dnhwaLRDfA 318 (576)
T KOG2549|consen 271 VRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLC----------------LRP----------------ELDNHWALRDFA 318 (576)
T ss_pred HHHHhcCCccchhhHHHHHhhHHHHhhhhhhcc----------------CCc----------------cccchHHHHHHH
Confidence 444454455567899999999999998653211 110 345678888888
Q ss_pred HHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC-HH-HHHHHHHHHHHHh
Q 005891 300 LHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DE-VVLLVLEVHACIA 348 (671)
Q Consensus 300 L~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s-~e-V~~~~l~lLa~Is 348 (671)
...+..+....+.........++-++.+.+.|+. +. -.=-++..|+.++
T Consensus 319 A~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 8888888888888777777788899999999873 22 2223444444444
No 253
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.08 E-value=38 Score=36.67 Aligned_cols=156 Identities=17% Similarity=0.086 Sum_probs=83.9
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHH-hcchhhhhHHHHHHHHH----HhhcCCchHHHHHH-HHHHHHHH---
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKV-VRGDFIIFFNQIFDALC----KLSADSDANVQSAA-HLLDRLVK--- 101 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv-~~~~il~~f~eIf~~L~----kL~~D~d~~Vr~gA-~~LdrllK--- 101 (671)
+.++..+..+|+|+.+-+|.+-+.++.++... ..+....+...+.|.|. +..+.+-+...+|. ..-..++.
T Consensus 60 ~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~ 139 (339)
T PF12074_consen 60 KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSS 139 (339)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcc
Confidence 45778889999999999999998888887651 01223333344444444 44466655544322 11111111
Q ss_pred ----Hhhccc----chhhhhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhHHhc-hHHHHHHHHHhcCCC--C
Q 005891 102 ----DIVTES----DQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDS--S 168 (671)
Q Consensus 102 ----dIv~e~----~~f~L~~fIP~L~e~i~~~--np~vR~~alswL~~L~~ip~~~li~~-Lp~fL~gLf~lL~D~--~ 168 (671)
.+.... .-..-++=-.++.++++.. +++.-.+++..+..+..-........ ...+-..+.-++..+ .
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~ 219 (339)
T PF12074_consen 140 WKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVS 219 (339)
T ss_pred ccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCC
Confidence 000000 0000011111444555553 56666666666665544333222222 244555566677777 8
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 005891 169 HEIRQQADSALWEFLQEI 186 (671)
Q Consensus 169 ~eVR~~a~~~L~~ll~~I 186 (671)
.+||+.|.+.+.++...-
T Consensus 220 ~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 220 WKVRRAALSALKKLYASN 237 (339)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999888877633
No 254
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.97 E-value=65 Score=30.63 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhhcC
Q 005891 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 116 IP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~-D~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
+-.|..|+...||.+-..++..+..+.+-.|..+...+ -+|++.|.+++. .+++.||+.+...+..-...++..
T Consensus 43 ~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 43 MRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 44456777888999999999999988888776554322 457777777776 578899999999999999888753
No 255
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=74.09 E-value=1.2e+02 Score=31.91 Aligned_cols=219 Identities=17% Similarity=0.184 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhh-cCCchHHHHHHHHHHHHHHHhhcc--------------cch-hhhhhhHHHHHHhhcCCCHHHHHHH
Q 005891 71 FNQIFDALCKLS-ADSDANVQSAAHLLDRLVKDIVTE--------------SDQ-FSIEEFIPLLRERMNVLNPYVRQFL 134 (671)
Q Consensus 71 f~eIf~~L~kL~-~D~d~~Vr~gA~~LdrllKdIv~e--------------~~~-f~L~~fIP~L~e~i~~~np~vR~~a 134 (671)
++++|-.-+.++ +|.|.+--.+.+.|++++.-+--+ ..+ -.-+.+-|++..-+.+.+.. ...
T Consensus 5 ~pQlFW~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~--e~t 82 (262)
T PF14225_consen 5 FPQLFWTAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTY--ELT 82 (262)
T ss_pred hhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcH--HHH
Confidence 456666655554 556666665556666655522110 111 23456677777766654433 334
Q ss_pred HHHHHHhhcCCchhHH--------hchHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 005891 135 VGWITVLDSVPDIDML--------GFLPDFLDGLFNMLSDSS-----HEIRQQADSALWEFLQEIKNSPSVDYGRMAEIL 201 (671)
Q Consensus 135 lswL~~L~~ip~~~li--------~~Lp~fL~gLf~lL~D~~-----~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iL 201 (671)
+..+..+...++..++ -.+=..+|.+..-+.+++ ++++..| +.|...++.-+ ..++..++.-.
T Consensus 83 l~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A-~~La~~a~~~~---~~~La~il~~y 158 (262)
T PF14225_consen 83 LRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA-EALAQVAEAQG---LPNLARILSSY 158 (262)
T ss_pred HHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH-HHHHHHHHhCC---CccHHHHHHHH
Confidence 4555555555544332 122223444444666666 6777666 66777775332 34566666655
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhH
Q 005891 202 VQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPI 280 (671)
Q Consensus 202 l~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~i 280 (671)
...... ..-.|+..++....+.+.| |--+++..++..+....+.+|....+....++..+.-... .-.++
T Consensus 159 a~~~fr-------~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dl 229 (262)
T PF14225_consen 159 AKGRFR-------DKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADL 229 (262)
T ss_pred HhcCCC-------CHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHH
Confidence 544331 1334666666655555543 5677888888888888899999888888887776543111 23578
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHH
Q 005891 281 LSIATRQLSSEWEATRIEALHWIS 304 (671)
Q Consensus 281 l~~L~~~L~~~~~~tRiaaL~WL~ 304 (671)
+..+.+.++.+.|..-...|+-+.
T Consensus 230 ispllrlL~t~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 230 ISPLLRLLQTDLWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHhCCccHHHHHHHHHHHH
Confidence 889999999888766555555443
No 256
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=74.03 E-value=1.9e+02 Score=34.05 Aligned_cols=142 Identities=14% Similarity=0.057 Sum_probs=86.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC--C
Q 005891 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV--D 193 (671)
Q Consensus 116 IP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~--d 193 (671)
-..+..|+.|.++-+|.-++..++.-.+..+.-+.... ++...--+|+|.+..||..+.+.+.-|...++....+ .
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34567889999999998888776654332221111111 2222235789999999999989888888755432111 2
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
++.+...+++.+...-.-+|..++.-+..+...+-- -..-+-.+.+||-|..|+=|..-.+....+
T Consensus 355 ~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L-----~~SeIlIvsscmlDi~pd~r~~~~E~v~~i 420 (740)
T COG5537 355 VERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVL-----SSSEILIVSSCMLDIIPDSRENIVESVESI 420 (740)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccc-----chhHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 577777788766554444887777666554443321 234455677788888777555433333333
No 257
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.72 E-value=32 Score=32.19 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=60.8
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhhc
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D~~--~eVR~~a~~~L~~ll~~I~~ 188 (671)
...+..|..++...||.+-..++..+..+.+-.|..+...+ -.|++.|.++++++. +.||+.+...+..-...+++
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 33445577888899999999999999999988887765444 347888888988854 34999999999999888875
Q ss_pred C
Q 005891 189 S 189 (671)
Q Consensus 189 ~ 189 (671)
.
T Consensus 116 ~ 116 (133)
T smart00288 116 D 116 (133)
T ss_pred C
Confidence 3
No 258
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=73.34 E-value=17 Score=31.97 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCch--HHHHHH-HHHHHHHH
Q 005891 42 SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA--NVQSAA-HLLDRLVK 101 (671)
Q Consensus 42 ~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~--~Vr~gA-~~LdrllK 101 (671)
.|.+|.+|.+|+.-+..|++..+..--.--+.|+..+.+.+.|+.. .+.-|| ..|..+-.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3679999999999999999876543222246899999999987764 567777 55555533
No 259
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.16 E-value=1.5e+02 Score=32.50 Aligned_cols=225 Identities=17% Similarity=0.146 Sum_probs=122.2
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHH---HHhcc--hhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIA---KVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~---Kv~~~--~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
..+....++|. ...|.-..+++.... |...+ .....+.+.++.-.--....+..=|.+| +.|--++.+|=...
T Consensus 40 ~~~~~~~~~~~-ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAn 118 (342)
T KOG2160|consen 40 LGMAEAKLKDE-KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNAN 118 (342)
T ss_pred hhhhhhhccCc-ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHH
Confidence 34445555533 566666666665544 22111 1111111221111111134455667777 55555555443322
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchh--HHhchHHHHHHHHHhc-CCCChHHHHHHHHHHHHHH
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDID--MLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~-ip~~~--li~~Lp~fL~gLf~lL-~D~~~eVR~~a~~~L~~ll 183 (671)
+=-++.-..|.+. .+.+.++.+|..+...|..... .|... ++.+- ++..|++++ +|.+.+||+.|--++..++
T Consensus 119 dl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~~Ll~~ls~~~~~~~r~kaL~AissLI 195 (342)
T KOG2160|consen 119 DLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELG--ALSKLLKILSSDDPNTVRTKALFAISSLI 195 (342)
T ss_pred hHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 2223455555555 8899999999999999997654 55433 33333 777777666 6677789998877777777
Q ss_pred HHhhcCCCCC----hHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc-CCcHhHHHH
Q 005891 184 QEIKNSPSVD----YGRMAEILVQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVV 256 (671)
Q Consensus 184 ~~I~~~~~~d----~~~iI~iLl~~~~s~--d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~ 256 (671)
+..+ +..+ ... ...|...++++ +...++.+++.+..+++-...+---.-+...+..+..+. .-+.++++.
T Consensus 196 Rn~~--~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~ 272 (342)
T KOG2160|consen 196 RNNK--PGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEA 272 (342)
T ss_pred hcCc--HHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHH
Confidence 6443 1111 111 23455555663 456677889988888876433321223444444444333 334566776
Q ss_pred HHHHHHHHH
Q 005891 257 ARETNEELR 265 (671)
Q Consensus 257 A~~~n~~L~ 265 (671)
|..+.-++.
T Consensus 273 ~l~~~l~~l 281 (342)
T KOG2160|consen 273 ALTALLSLL 281 (342)
T ss_pred HHHHHHHHH
Confidence 665554443
No 260
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=72.71 E-value=75 Score=32.04 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHH
Q 005891 67 FIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK 101 (671)
Q Consensus 67 il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllK 101 (671)
.-+.+..++..|.++-.+.+-..|+.+ ..+...++
T Consensus 35 ~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~ 70 (198)
T PF08161_consen 35 SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIR 70 (198)
T ss_pred ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 345667777777777777776667666 45555544
No 261
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=72.31 E-value=20 Score=31.06 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=51.7
Q ss_pred hHhhhHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH
Q 005891 29 ILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA 93 (671)
Q Consensus 29 yl~~Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA 93 (671)
|...++.|...-+. -++..||....+++.+++...+..+-.-|+.+|..+.....|.+.++-.-|
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~a 79 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLA 79 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHH
Confidence 56677888777653 458899999999999998876666777799999999998888776655545
No 262
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=72.21 E-value=2.3e+02 Score=34.24 Aligned_cols=263 Identities=15% Similarity=0.142 Sum_probs=139.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhc-CCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC--CCC
Q 005891 117 PLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP--SVD 193 (671)
Q Consensus 117 P~L~e~i~~~np~vR~~alswL~~L~~-ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~--~~d 193 (671)
|.+...++++.=+.|.-+|..++.+.. .++ -..+-+.+++..+++.|++.-|+..|.-+|.-|+..-..++ ..+
T Consensus 463 ~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 463 NHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 444444566667888889999988721 222 23456678888899999999999999888888875432211 123
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhh----hh----cCC-----cHhHHHHH-HH
Q 005891 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP----CI----SDK-----EEKIRVVA-RE 259 (671)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~----~L----sd~-----~~eIR~~A-~~ 259 (671)
.+.+++.++.-.+.-+-++--. -+..|++-.++.+-||-|++...+.. .+ ..+ .-+=+++| .-
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~---vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasG 616 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSM---VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASG 616 (970)
T ss_pred hhHHHHHHHHhcccccchHHHH---HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHH
Confidence 5666666666555433332222 45567778888999999988775544 11 111 11122222 22
Q ss_pred HHHHHHHhcCCCCCCCC-----hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh---ChhhHhhhhhHHHHHHHHhcCC
Q 005891 260 TNEELRAIKADPADGFD-----VGPILSIATRQLSSEWEATRIEALHWISTLLNR---HRTEVLHFLNDIFDTLLKALSD 331 (671)
Q Consensus 260 ~n~~L~~~i~~~~~~~d-----l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~---~p~~i~~~l~~l~p~LL~~LsD 331 (671)
...++..++-.-.+..+ .....+++.=-+.++....=..|+ .+.++ ...++.+...+++..+.+++.|
T Consensus 617 iL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~----dildg~tf~skeI~pimwgi~Ell~~~l~~ 692 (970)
T COG5656 617 ILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEAL----DILDGYTFMSKEIEPIMWGIFELLLNLLID 692 (970)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHhhhhHHHHHhhhhhhHHHHHHHhcccc
Confidence 22333222221111110 012222222233332222211122 23333 2455667788899999999988
Q ss_pred CCH-HHHHHHHHHHHHHh-------hccchHHHHHHHHHhhc-cccchhhhhHH-HH-HHHHHhccCCh
Q 005891 332 PSD-EVVLLVLEVHACIA-------KDLQHFRQLVVFLVHNF-RVDNSLLEKRG-AL-IIRRLCVLLDA 389 (671)
Q Consensus 332 ~s~-eV~~~~l~lLa~Is-------~~~~~F~~fm~~LL~lf-~~d~~lLe~Rg-~~-IIR~Lc~~L~~ 389 (671)
+.. .-.....-.+..|. .+.+.+-+.+..+.+.. .++..-|+.+. .. |+.-+-..++.
T Consensus 693 ~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd 761 (970)
T COG5656 693 EITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRD 761 (970)
T ss_pred cchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccc
Confidence 875 22334444555554 13455566666666543 44444444432 11 44445555544
No 263
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.00 E-value=1.5e+02 Score=32.09 Aligned_cols=129 Identities=18% Similarity=0.184 Sum_probs=75.4
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH-hhcccchhhhh
Q 005891 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKD-IVTESDQFSIE 113 (671)
Q Consensus 36 pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i-l~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKd-Iv~e~~~f~L~ 113 (671)
.+...+.|+++.||.+|.+.+-+.... ...+ ..+=...++.+.+++.|.++ .+.||.++-++..+ -+. ..-+.
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~---~~ll~ 81 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELR---KKLLQ 81 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHH---HHHHH
Confidence 455667899999999999887776432 2222 23334778889999999988 56666544433221 121 12244
Q ss_pred hhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchh--HHhchH----HHHHHHHHhcCCCChH
Q 005891 114 EFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDID--MLGFLP----DFLDGLFNMLSDSSHE 170 (671)
Q Consensus 114 ~fIP~L~e~i~~~-np~vR~~alswL~~L~~ip~~~--li~~Lp----~fL~gLf~lL~D~~~e 170 (671)
.|+-.+..+++++ ++-.+ .+|-.+.++.+..+.- +...++ .-+..|+....|.+..
T Consensus 82 ~~~k~l~~~~~~p~~~lad-~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n 144 (353)
T KOG2973|consen 82 DLLKVLMDMLTDPQSPLAD-LICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYN 144 (353)
T ss_pred HHHHHHHHHhcCcccchHH-HHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccc
Confidence 4788888888876 44444 3444555555544321 233333 3444555566666554
No 264
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.97 E-value=1.3e+02 Score=38.81 Aligned_cols=175 Identities=17% Similarity=0.171 Sum_probs=102.0
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhccc-ch-
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES-DQ- 109 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~-~~- 109 (671)
+....+..+..|.+.+||...-..++++...++..+.+|...+++...-...|.+..|-.+|.. -.+|...+. ..
T Consensus 83 ~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~---sf~~~f~~ek~~~ 159 (1312)
T KOG0803|consen 83 EWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKA---SFKDGFAEEKDRH 159 (1312)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheecccchHHHHHHHH---HHHhhcChhhhHH
Confidence 3344556778899999999999999999888888888999999999988889999888777721 222222211 00
Q ss_pred ---hhhhhhHHHHHHhh-------------------cCCCHHH-HHHHHHHHHHhhc-CCchhHH---hchHHH--HHHH
Q 005891 110 ---FSIEEFIPLLRERM-------------------NVLNPYV-RQFLVGWITVLDS-VPDIDML---GFLPDF--LDGL 160 (671)
Q Consensus 110 ---f~L~~fIP~L~e~i-------------------~~~np~v-R~~alswL~~L~~-ip~~~li---~~Lp~f--L~gL 160 (671)
.--+.+.+.+.+-+ ....+++ +..++..+..+.- ....++. +-+-.| -+..
T Consensus 160 v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~f 239 (1312)
T KOG0803|consen 160 VWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKF 239 (1312)
T ss_pred HHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHH
Confidence 11112222222221 1111222 2222222223211 1112222 112222 3334
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHhcCCCC
Q 005891 161 FNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPD 209 (671)
Q Consensus 161 f~lL~D~~~eVR~~a~~~L~~ll~~I~~~-~~~d~~~iI~iLl~~~~s~d 209 (671)
.+++.+.++.||.+.-+++-.+++.+... ...+-..+.+.++....+.+
T Consensus 240 Wk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 240 WKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc
Confidence 57999999999999999999999988753 11233445555555555544
No 265
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=71.82 E-value=6.3 Score=29.48 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=30.0
Q ss_pred HHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005891 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (671)
Q Consensus 303 L~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lL 344 (671)
|..+.+..|.-+. .+.+...+.+.|.|+++.||..+++++
T Consensus 3 l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3445555555444 457889999999999999999998764
No 266
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=71.48 E-value=3.3e+02 Score=35.75 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=90.8
Q ss_pred HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 005891 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (671)
Q Consensus 149 li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~ 228 (671)
+-.|+|.++.-.-.++.-+++.|+.-+......+-..+.. ..-++++..|+.++.+.+..---+|+.-+..++...+
T Consensus 429 L~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS---YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 3458888888777888889999999887766665554421 1237899999999866655433467777777787778
Q ss_pred cCcccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhcCCCCCCCCh-HhHHHHHHHhcCCCcHHH-HHHHHHHHHH
Q 005891 229 DQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSSEWEAT-RIEALHWIST 305 (671)
Q Consensus 229 ~~l~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il~~L~~~L~~~~~~t-RiaaL~WL~~ 305 (671)
..+.|| ..++-++|..+. -+.++||....- ...+.-.-.. .+-.+ +++-=++.+++.+.+... |+..+..+.+
T Consensus 506 ~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~i-l~~La~~~~~--~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~ 581 (1426)
T PF14631_consen 506 SELQPF-ATFLKGILDYLDNLSLQQIRKLFDI-LCTLAFSDSS--SSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMM 581 (1426)
T ss_dssp HHHHHT-HHHHHGGGGGGGG--HHHHHHHHHH-HHHHHHHHSS-----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCCcc--cchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Confidence 888887 445555666665 456889987542 2222211111 11112 455557888998877655 4444444444
Q ss_pred HH
Q 005891 306 LL 307 (671)
Q Consensus 306 L~ 307 (671)
+.
T Consensus 582 i~ 583 (1426)
T PF14631_consen 582 IK 583 (1426)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 267
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.25 E-value=5.9 Score=40.26 Aligned_cols=93 Identities=22% Similarity=0.171 Sum_probs=76.2
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-c-
Q 005891 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-D- 350 (671)
Q Consensus 273 ~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-~- 350 (671)
+.+||...++.....+..-....|.-|-+-+..|....++++.+-++++++.|=..|.-.+.+|...++++|.+++- .
T Consensus 108 e~Ldy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~ 187 (262)
T KOG3961|consen 108 EKLDYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG 187 (262)
T ss_pred HhccchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc
Confidence 45688899998888887666777888888888888888899999999999999999999999999999999999882 1
Q ss_pred --cchHHHHHHHHHhhc
Q 005891 351 --LQHFRQLVVFLVHNF 365 (671)
Q Consensus 351 --~~~F~~fm~~LL~lf 365 (671)
..-+.+|-..||..+
T Consensus 188 ~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 188 CVGAALVPFYRQLLPVL 204 (262)
T ss_pred ccchhhhhHHHHhhhhh
Confidence 344555555555544
No 268
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.74 E-value=2.5e+02 Score=34.10 Aligned_cols=195 Identities=20% Similarity=0.195 Sum_probs=118.7
Q ss_pred hhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh
Q 005891 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI 103 (671)
Q Consensus 25 ~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il-~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdI 103 (671)
..+++.+.+...+-.|- -..=|..||-++..+++..|.++. .-.+.+++.|-+=..|+|. -+.| ||.++--+
T Consensus 19 s~aETI~kLcDRvessT---L~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~--ik~~--LdTl~il~ 91 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESST---LLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEI--IKYA--LDTLLILT 91 (970)
T ss_pred cHHhHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHH--HHHH--HHHHHHHH
Confidence 34566666666664332 223377888888888877665432 2234445544443333322 1122 22222211
Q ss_pred hcc-----------cc--------hh-hhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh---HHhchHHHHHHH
Q 005891 104 VTE-----------SD--------QF-SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID---MLGFLPDFLDGL 160 (671)
Q Consensus 104 v~e-----------~~--------~f-~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~---li~~Lp~fL~gL 160 (671)
..+ +. .| --+.+|..+.+.+..-|=+||.+++..+..+.+.-+.+ .+-..|.=+..|
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 111 00 00 01456788888888888999999999999998877765 455678888888
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHhh
Q 005891 161 FNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAAS----PDEFTRLTAITWINEFVKL 226 (671)
Q Consensus 161 f~lL~D~~~eVR~~a~~~L~~ll~~I~~~~-~~d~~~iI~iLl~~~~s----~d~~irl~al~WI~~~~~l 226 (671)
..+|.|+..-||..+.-.|.++.+.-+... -+-|+.+.+.|...+.. ..-.|-..|+..|.++++-
T Consensus 172 mdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 172 MDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 899999999999999877777765432100 01245555555544433 2346777899999888875
No 269
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.73 E-value=3.2e+02 Score=35.33 Aligned_cols=232 Identities=17% Similarity=0.180 Sum_probs=120.1
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh---cCCchHH-HHHHHHHHHHHHHhhcccchhhh
Q 005891 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS---ADSDANV-QSAAHLLDRLVKDIVTESDQFSI 112 (671)
Q Consensus 37 vL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~---~D~d~~V-r~gA~~LdrllKdIv~e~~~f~L 112 (671)
-+..+..+-.+||--..+++.+|..-++...+.-|..++.-+-.+. ...+.++ |-|=..|.-...|.....+.-.+
T Consensus 847 ~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 847 EVSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred HHHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 3555667777788888889888877655555443555555554322 2223333 33224433333344433222233
Q ss_pred hhhHHHHHHhhcC-CCHHHHHHHHHHHHHhh---cC----CchhH---------------HhchHH-----HHHHHHHhc
Q 005891 113 EEFIPLLRERMNV-LNPYVRQFLVGWITVLD---SV----PDIDM---------------LGFLPD-----FLDGLFNML 164 (671)
Q Consensus 113 ~~fIP~L~e~i~~-~np~vR~~alswL~~L~---~i----p~~~l---------------i~~Lp~-----fL~gLf~lL 164 (671)
..+|..+...-.- .|-.+-..+++.+-.+. .. .+.+. -..+|+ ++.-|.++-
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 4444444433321 23233333333222211 00 00010 012222 234445777
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhcCCCCC-h----HHHHHHHHHhcCCC------CHHHH----HHHHHHHHHHHhhcCc
Q 005891 165 SDSSHEIRQQADSALWEFLQEIKNSPSVD-Y----GRMAEILVQRAASP------DEFTR----LTAITWINEFVKLGGD 229 (671)
Q Consensus 165 ~D~~~eVR~~a~~~L~~ll~~I~~~~~~d-~----~~iI~iLl~~~~s~------d~~ir----l~al~WI~~~~~l~~~ 229 (671)
.|.-.+||+.|++.+-+....-+...... + -.+|..|+....++ .++++ .+++.-|+-+.++.++
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 88999999999997666665444332222 2 23333444422221 23442 3455566666666443
Q ss_pred C---------cccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 230 Q---------LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 230 ~---------l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
. +..-+..++..+.+..+|..+|+.-.|.++.+++...+
T Consensus 1087 ~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1087 NFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 2 23335667777788888999999999999999876543
No 270
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=70.56 E-value=31 Score=36.96 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=82.5
Q ss_pred hHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC-----HHHHHH-HHHHHH
Q 005891 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD-----EFTRLT-AITWIN 221 (671)
Q Consensus 148 ~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d-----~~irl~-al~WI~ 221 (671)
++.-|+..+...| +..++.+.|.+|.++|. + +.-+..++|+.+.+..++- ....++ .+..+.
T Consensus 194 ELq~YF~kvisal---~dEs~~~~r~aAl~sLr-------~--dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~ 261 (450)
T COG5095 194 ELQMYFDKVISAL---LDESDEQTRDAALESLR-------N--DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYS 261 (450)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc-------c--CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444555555533 34467788888765442 1 2346788888888776431 222333 333444
Q ss_pred HHHhhcCcCcccchHhHHHHHhhhhcC----Cc------HhHHHHHHHHHHHHHHhcCCCCCCCCh-HhHHHHHHHhcCC
Q 005891 222 EFVKLGGDQLVPYYADILGAILPCISD----KE------EKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSS 290 (671)
Q Consensus 222 ~~~~l~~~~l~pflp~LLp~LL~~Lsd----~~------~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il~~L~~~L~~ 290 (671)
.+++-..--+-||+.+++|.++.|+.- ++ -.+|..|....+...+-+.. ....+ ..+...+.+-+.+
T Consensus 262 sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~--~YktLkPRvtrTllKafLD 339 (450)
T COG5095 262 SLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSS--SYKTLKPRVTRTLLKAFLD 339 (450)
T ss_pred HHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhH--hhhhhchHHHHHHHHHHHh
Confidence 344333333568999999999998842 11 23788777666554443322 00011 2344444444432
Q ss_pred --CcHHHHHHHHHHHHHHHhhC
Q 005891 291 --EWEATRIEALHWISTLLNRH 310 (671)
Q Consensus 291 --~~~~tRiaaL~WL~~L~~~~ 310 (671)
..+.|...|+.-+..+....
T Consensus 340 ~~k~~sT~YGalkgls~l~ke~ 361 (450)
T COG5095 340 REKTESTQYGALKGLSILSKEV 361 (450)
T ss_pred cccccchhhhhhhhhhhhchhh
Confidence 23667888887777665544
No 271
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=70.17 E-value=13 Score=36.94 Aligned_cols=77 Identities=25% Similarity=0.387 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhcCCchH-HHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 005891 71 FNQIFDALCKLSADSDAN-VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (671)
Q Consensus 71 f~eIf~~L~kL~~D~d~~-Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~l 149 (671)
.++.++.+.+.+.=.++. |+.+-..+.. - ...+...-+.+|...+. ++.||++|+.++ .+.++.++
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~----W----~~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L---~~~~d~~l 108 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKK----W----APLDPEDALELLSPKFP--DPFVRAYAVERL---ESASDEEL 108 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHc----C----CCCCHHHHHHHhCccCC--CHHHHHHHHHHH---HhCCHHHH
Confidence 355566666555544444 5543333221 1 12345555666665554 899999999987 45788899
Q ss_pred HhchHHHHHHH
Q 005891 150 LGFLPDFLDGL 160 (671)
Q Consensus 150 i~~Lp~fL~gL 160 (671)
..|+|.+++.|
T Consensus 109 ~~yLpQLVQaL 119 (184)
T smart00145 109 LLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHHH
Confidence 99999999976
No 272
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.03 E-value=29 Score=34.50 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=95.0
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
++....+.-..++|=+.+.+|..|-....+. +.. ++....+..+..+..-+.|-.| ..++...+ ..
T Consensus 16 ~~~~~~~~~~~~~GV~~p~lr~lak~~~~~~----~~~-----~~~~~l~~~L~~~~~~E~~~la~~il~~~~~-~~--- 82 (213)
T PF08713_consen 16 FMQRYMKEKDPFLGVRTPDLRKLAKDIYKEL----KLS-----EELYELADELWESGYREERYLALLILDKRRK-KL--- 82 (213)
T ss_dssp HHHHHTTTSSB-----HHHHHHHHHHHHHHH----CTS-----HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGG-G----
T ss_pred HHHHhCCCcccccCcCcHHHHHHHHHHHhhc----ccc-----hHHHHHHHHHcCCchHHHHHHHHHHhHHHhh-hh---
Confidence 3333444555566655666666543332222 111 2333444456677777777766 33332211 11
Q ss_pred chhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 108 DQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
-...++.+...+.. .++.+--.++..+-. .+...-|...+-+.+++.+.+.=+|+++..++-.+..
T Consensus 83 ----~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~-------~~~~~~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~-- 149 (213)
T PF08713_consen 83 ----TEEDLELLEKWLPDIDNWATCDSLCSKLLG-------PLLKKHPEALELLEKWAKSDNEWVRRAAIVMLLRYIR-- 149 (213)
T ss_dssp -----HHHHHHHHHCCCCCCCHHHHHHHTHHHHH-------HHHHHHGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGG--
T ss_pred ----hHHHHHHHHHHhccCCcchhhhHHHHHHHH-------HHHHhhHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH--
Confidence 11245666666654 677665555444321 1111117778888889999999999998765543332
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc
Q 005891 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY 234 (671)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pf 234 (671)
. .+++.+..++.....++++.+|...--++.++..-.++...+|
T Consensus 150 -~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 150 -K---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp -G---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred -h---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 2 4678888888888999999998865555555544444444333
No 273
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=69.85 E-value=5.7 Score=28.26 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
+.+|.|++.|+.++++++..++|+|..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46788899999889999999999999886
No 274
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.68 E-value=1.5e+02 Score=32.53 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=22.8
Q ss_pred HHHHHHhcCC-CChHHHHHHHHHHHHHHHHhhc
Q 005891 157 LDGLFNMLSD-SSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 157 L~gLf~lL~D-~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
++.|+.++.| ...++|..+.+|+.-+-..-|+
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~ 317 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS 317 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC
Confidence 6778889999 4567887777777655544443
No 275
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=68.08 E-value=10 Score=35.00 Aligned_cols=125 Identities=21% Similarity=0.274 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC--CCC--------------
Q 005891 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSV-------------- 192 (671)
Q Consensus 129 ~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~--~~~-------------- 192 (671)
++|..++..+..+... +.-...|++++.+++.+.. ++.-.......|..+.+++.+. ...
T Consensus 3 ~i~~kl~~~l~~i~~~---~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKR---DWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHH---HTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4555555555544321 1123456677777766666 4666666778888888888641 100
Q ss_pred ChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHH
Q 005891 193 DYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (671)
Q Consensus 193 d~~~iI~iLl~~~~s~d----~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~ 260 (671)
..+.+++++.+.+.... +.....++.-+..++...+...+ .-..+++.++..+. .++.+..|.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i-~~~~~l~~~~~~l~--~~~~~~~A~~c 147 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELI-INSNLLNLIFQLLQ--SPELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH-HSSSHHHHHHHHTT--SCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh-ccHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 13455555555444332 66777777766666664443322 12458888888884 44458777766
No 276
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=67.34 E-value=22 Score=30.76 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=53.9
Q ss_pred hhHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005891 114 EFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (671)
Q Consensus 114 ~fIP~L~e~i-~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~ 180 (671)
.|+-++...+ ...+.+||..++.++..+....+..+-.=.+.++..+-....|.+.++-..|-+++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3444455554 447899999999999999998888888889999998888889988888877766654
No 277
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=67.13 E-value=2.3e+02 Score=32.26 Aligned_cols=277 Identities=15% Similarity=0.110 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCC-chHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHh
Q 005891 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRER 122 (671)
Q Consensus 45 d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~-d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~ 122 (671)
.-..|..|++.+...++..+- .-..+||..-..++... ..++|.+| ++|.++++.--... ...--.+...
T Consensus 3 ~l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-----~~~R~~fF~~ 74 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-----GLMRAEFFRD 74 (464)
T ss_pred CHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-----HHHHHHHHHH
Confidence 345677777777666554332 34567888888877655 45789988 78777776211100 0000111111
Q ss_pred hc-CCCHHHHHHHHHHHHHhhcCCchh-------HHhchHHHHHHHHHhcCCCChHHHH-------------HHHHHHHH
Q 005891 123 MN-VLNPYVRQFLVGWITVLDSVPDID-------MLGFLPDFLDGLFNMLSDSSHEIRQ-------------QADSALWE 181 (671)
Q Consensus 123 i~-~~np~vR~~alswL~~L~~ip~~~-------li~~Lp~fL~gLf~lL~D~~~eVR~-------------~a~~~L~~ 181 (671)
+. ..++..=-.-+.++..|.+ -|.+ +.+.+-.+++.+++.....-...++ .-...+..
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~-~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTD-NGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHc-CCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 11 1222222233344444322 2223 3333444444333111000000000 01223334
Q ss_pred HHHH----hhcCC-CC---ChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhc--CcCcccchHhHHHHHhhhhcCCc
Q 005891 182 FLQE----IKNSP-SV---DYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLG--GDQLVPYYADILGAILPCISDKE 250 (671)
Q Consensus 182 ll~~----I~~~~-~~---d~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l~--~~~l~pflp~LLp~LL~~Lsd~~ 250 (671)
+++- |+-.. .. ++..++..+...|... ++..=..++.-++.++..+ |.+ -++.++..+-......
T Consensus 154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~---sl~~~i~vLCsi~~~~- 229 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSE---SLSPCIEVLCSIVNSV- 229 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChH---HHHHHHHHHhhHhccc-
Confidence 4333 33221 12 2667777777766444 3433355777777666532 222 3566666666553322
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC--C----CcHHHHHHHHHHHHHHHhhChhhHhhh--hh--H
Q 005891 251 EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--S----EWEATRIEALHWISTLLNRHRTEVLHF--LN--D 320 (671)
Q Consensus 251 ~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~----~~~~tRiaaL~WL~~L~~~~p~~i~~~--l~--~ 320 (671)
+..+.+.++...|.+.-. -..++..|...+. + ++...--.|+.-+.++.-+.+++-.+- .. .
T Consensus 230 -~l~~~~w~~m~nL~~S~~-------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~ 301 (464)
T PF11864_consen 230 -SLCKPSWRTMRNLLKSHL-------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS 301 (464)
T ss_pred -ccchhHHHHHHHHHcCcc-------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence 555555555555443211 1466677777662 2 233344478888888888774443322 22 4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH
Q 005891 321 IFDTLLKALSDPSDEVVLLVLE 342 (671)
Q Consensus 321 l~p~LL~~LsD~s~eV~~~~l~ 342 (671)
++|.+...++-+++.|-...+.
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~ 323 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILL 323 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHH
Confidence 8888888888666544433433
No 278
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.01 E-value=72 Score=40.67 Aligned_cols=118 Identities=23% Similarity=0.180 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc-----hhhhhhhHHHHH-HhhcC-CCHHHH-------HHHH
Q 005891 71 FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD-----QFSIEEFIPLLR-ERMNV-LNPYVR-------QFLV 135 (671)
Q Consensus 71 f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~-----~f~L~~fIP~L~-e~i~~-~np~vR-------~~al 135 (671)
|--++..|.++..|.-++||||| ..+=|.+-.-...-+ .--...++|+|- .+++. .++..+ ++.+
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 55778888899999999999999 665554332211111 122455667665 11211 111111 1222
Q ss_pred HHHHHhhcCCch---------hHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 136 GWITVLDSVPDI---------DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 136 swL~~L~~ip~~---------~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
--|.-++++-.. ++..-..++|+-+.+..+|.++++..+|..++..++..+-.
T Consensus 1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~ 1136 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIE 1136 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhh
Confidence 222222222211 23344455566667889999999999999999999987754
No 279
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.33 E-value=3.6e+02 Score=33.91 Aligned_cols=293 Identities=14% Similarity=0.114 Sum_probs=155.1
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH-------Hhc--CCCChHHHHHHHHHHHHHHH-HhhcC
Q 005891 120 RERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF-------NML--SDSSHEIRQQADSALWEFLQ-EIKNS 189 (671)
Q Consensus 120 ~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf-------~lL--~D~~~eVR~~a~~~L~~ll~-~I~~~ 189 (671)
...+.+....+-..+-+|+..-.+--+..++..+.-|+...= .+. .|+.+.++.++. .+-+ +-+..
T Consensus 84 f~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e----~~~e~es~DY 159 (1048)
T KOG2011|consen 84 FAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTE----LFDERESGDY 159 (1048)
T ss_pred HHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHH----HHhhhhhccC
Confidence 344444444477777788887766666667777776665431 112 223444555442 2222 33322
Q ss_pred CC-----------CChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhhcCcCcccchH---------hHHHHHhhh
Q 005891 190 PS-----------VDYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVPYYA---------DILGAILPC 245 (671)
Q Consensus 190 ~~-----------~d~~~iI~iLl~~~~s~d----~~irl~al~WI~~~~~l~~~~l~pflp---------~LLp~LL~~ 245 (671)
|. ..+..+++.++..|+..+ ...=...+.||..|..-.. ....|+. .++...+..
T Consensus 160 pl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqv-R~fRhTaTl~~mklmt~Lv~va~~L 238 (1048)
T KOG2011|consen 160 PLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQV-RAFRHTATLAAMKLMTALVSVALNL 238 (1048)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 125667777777777632 2333445556654432211 1111222 222222222
Q ss_pred hcCCcHhHHHHH-HH--------HHHHHHHhcCCCCCCCC-hHhHHHHHHH-----hcCCCcHHHHHHHHHHHHHHHhhC
Q 005891 246 ISDKEEKIRVVA-RE--------TNEELRAIKADPADGFD-VGPILSIATR-----QLSSEWEATRIEALHWISTLLNRH 310 (671)
Q Consensus 246 Lsd~~~eIR~~A-~~--------~n~~L~~~i~~~~~~~d-l~~il~~L~~-----~L~~~~~~tRiaaL~WL~~L~~~~ 310 (671)
..+.+..-|+.- .+ -.++|+...++.....| +..+++.+.. +..+-....|..|++-|+.-...+
T Consensus 239 s~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~y 318 (1048)
T KOG2011|consen 239 SSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSY 318 (1048)
T ss_pred HHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhc
Confidence 222221112111 00 11122222211111111 2345543333 233567789999999999999999
Q ss_pred hhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHhhccccchhhhhHHHH----H
Q 005891 311 RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL-------QHFRQLVVFLVHNFRVDNSLLEKRGAL----I 379 (671)
Q Consensus 311 p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~-------~~F~~fm~~LL~lf~~d~~lLe~Rg~~----I 379 (671)
|+-++ .+..+.++==+|+|...+||..++++|-.+.+++ .++..|=..++.|-..|.. ..-|..- +
T Consensus 319 P~~Fl--~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~-~~Vrav~L~~~~ 395 (1048)
T KOG2011|consen 319 PEIFL--SDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRN-VSVRAVGLVLCL 395 (1048)
T ss_pred cHHHh--cchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHH
Confidence 98877 4556666666799999999999999998888642 3445566666666633321 1223222 3
Q ss_pred HHHHhccCChHHHHHHHHHhhcccCChhHHHHHHHHHHHHhcc
Q 005891 380 IRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLT 422 (671)
Q Consensus 380 IR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLT 422 (671)
-+.-|..|+.+.|+...+-+...+.+..- ..+..|+.-+..
T Consensus 396 ~~~~~g~L~d~di~~Vy~Li~d~~r~~~~--aa~~fl~~k~~~ 436 (1048)
T KOG2011|consen 396 LLSSSGLLSDKDILIVYSLIYDSNRRVAV--AAGEFLYKKLFE 436 (1048)
T ss_pred HHhcccccChhHHHHHHHHHhccCcchHH--HHHHHHHHHhhc
Confidence 33446678888888888877766555444 445555555544
No 280
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=64.89 E-value=99 Score=29.34 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=55.7
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHhchH--HHHHH-HHHhcCC---CChHHHHHHHHHHHHHHHHhhc
Q 005891 116 IPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDG-LFNMLSD---SSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 116 IP~L~e~i~-~~np~vR~~alswL~~L~~ip~~~li~~Lp--~fL~g-Lf~lL~D---~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
+-.|..|+. ..||.+-..++..+..+.+-.|..+...+- +|++. |.+++++ ++.+|+..+.+.+......++.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 334456665 478999999999999998888876654332 56776 7777764 4569999999999999988875
Q ss_pred CC
Q 005891 189 SP 190 (671)
Q Consensus 189 ~~ 190 (671)
.+
T Consensus 120 ~~ 121 (141)
T cd03565 120 SP 121 (141)
T ss_pred Cc
Confidence 43
No 281
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=64.76 E-value=84 Score=28.23 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=55.3
Q ss_pred ChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhH-H-HHHHHH----hc--CCCCHHHHHHHHHHHHHH
Q 005891 276 DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND-I-FDTLLK----AL--SDPSDEVVLLVLEVHACI 347 (671)
Q Consensus 276 dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~-l-~p~LL~----~L--sD~s~eV~~~~l~lLa~I 347 (671)
....++..|.+.+.+.+|....-||.-|-.+...|++.+..++.. . .-.+++ .. .|.+..|+.++++++...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999988765432 2 222222 11 245788999999887654
Q ss_pred h
Q 005891 348 A 348 (671)
Q Consensus 348 s 348 (671)
+
T Consensus 114 ~ 114 (115)
T cd00197 114 A 114 (115)
T ss_pred h
Confidence 3
No 282
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=64.67 E-value=6.1 Score=29.57 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.3
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHH
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEA 55 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~ea 55 (671)
+.+...+...|.|+++.||.+|.+.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4788999999999999999999765
No 283
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=64.23 E-value=1.8e+02 Score=29.92 Aligned_cols=200 Identities=17% Similarity=0.092 Sum_probs=113.9
Q ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc-hh
Q 005891 34 VPPVLN-SFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD-QF 110 (671)
Q Consensus 34 i~pvL~-~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~-~f 110 (671)
+|.++. .-..++++......+++...++. + . ...+.++.+|..+...+...++.-+ .++.++.+ ..+ .|
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~--~-~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~----~~~r~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACH--K-N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWK----ANDRHF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhcc--C-c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHH----hCchHH
Confidence 344444 44577888888888887777642 2 1 2345677777777777766664333 33444333 211 12
Q ss_pred hhhhhHHHHHH---hh----c--CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhc-CCCChHHHHHHHHHHH
Q 005891 111 SIEEFIPLLRE---RM----N--VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML-SDSSHEIRQQADSALW 180 (671)
Q Consensus 111 ~L~~fIP~L~e---~i----~--~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL-~D~~~eVR~~a~~~L~ 180 (671)
+.+-+.+.. ++ . +.+.+....+...+.-+....+. +-++++..+-.++ .+.++.++..+.+.|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 222222222 11 1 22234444444566666665544 7778888888888 7888899999999999
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhc--CcCcccchHhHHHHHhhhhcCCcH
Q 005891 181 EFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLG--GDQLVPYYADILGAILPCISDKEE 251 (671)
Q Consensus 181 ~ll~~I~~~~~~d~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l~--~~~l~pflp~LLp~LL~~Lsd~~~ 251 (671)
.+++.-. +|+.+.-..+...+..+ .+.+-...++|...+-... .+..-.+...++..+-....+.+.
T Consensus 148 ~Lc~~~v----vd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 148 PLCEAEV----VDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHhh----ccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 9995332 67777777777666332 4566665666665333221 112222455555555555555553
No 284
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=64.14 E-value=2.6e+02 Score=31.78 Aligned_cols=116 Identities=9% Similarity=0.030 Sum_probs=76.5
Q ss_pred hHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCCh--HhHHHHHHHhc-----CCCcHHHHHHHHHHHHHHH
Q 005891 235 YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV--GPILSIATRQL-----SSEWEATRIEALHWISTLL 307 (671)
Q Consensus 235 lp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl--~~il~~L~~~L-----~~~~~~tRiaaL~WL~~L~ 307 (671)
-|+++.-+..++-..+-+.-.++.-+.+.+.+- ++..+.+ ..+++.|...+ .+.++...-||+-.|..+.
T Consensus 313 ~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~---D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 313 DPQFLDFLESWFRSDDSNLITMGSLAIGNFARR---DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred CcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 577888889988877766666655555544322 1111111 35555544444 3567888889999998887
Q ss_pred hhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccch
Q 005891 308 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH 353 (671)
Q Consensus 308 ~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~ 353 (671)
.-.+.+---.--++..++|+.+.-.+|-|+++-+-++..+..+++|
T Consensus 390 IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~ 435 (604)
T KOG4500|consen 390 IPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY 435 (604)
T ss_pred ccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH
Confidence 7666553322346777888889999999999988888777755444
No 285
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=62.71 E-value=2.3e+02 Score=30.63 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCC
Q 005891 130 VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAAS 207 (671)
Q Consensus 130 vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~-D~~~eVR~~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~s 207 (671)
-|...++.+..+-. .+ .-+.+++++..++. +.|+.+..+...++..-+..++ .+ -+.++..+..-+.+
T Consensus 3 ~r~~~~~~L~~l~~---~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~----~~~~~~~~~~~~kGl~~ 72 (339)
T PF12074_consen 3 QRVLHASMLSSLPS---SS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS----SELPKKVVDAFKKGLKD 72 (339)
T ss_pred HHHHHHHHHHhCCC---cc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC----cCCCHHHHHHHHHHhcC
Confidence 35555555554433 12 45666777776664 4788888888787777776662 22 37788999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-hcCcCcccchHhHHHHHhhhh
Q 005891 208 PDEFTRLTAITWINEFVK-LGGDQLVPYYADILGAILPCI 246 (671)
Q Consensus 208 ~d~~irl~al~WI~~~~~-l~~~~l~pflp~LLp~LL~~L 246 (671)
+..-+|..-+.++.+.+. ....+..+|...++|.++..+
T Consensus 73 kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 73 KKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred CCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 988899875555555543 112344556666666666555
No 286
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=62.66 E-value=32 Score=34.25 Aligned_cols=135 Identities=17% Similarity=0.239 Sum_probs=76.0
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhccc
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES 107 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~ 107 (671)
++...++..+++.-.++=.|||..|+.++..+.. ......++++ =.+.|.+.+...... ..
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~-~~~~~~~~ip-~~~~L~~i~~~~~~~-----------------~~ 63 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLH-SQDPTIPHIP-HREELQDIFPSESEA-----------------SL 63 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccccCCC-cHHHHHHHccccccc-----------------cc
Confidence 4566777888888888889999999999888762 1111111111 112222222211110 00
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
...+-....|.+...+. +-.|-..++.||+--.+.-+..+.+.+..+|-.++....
T Consensus 64 ~w~~~~~~F~~l~~LL~------------------------~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~ 119 (193)
T PF12612_consen 64 NWSSSSEYFPRLVKLLD------------------------LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELS 119 (193)
T ss_pred ccCCHHHHHHHHHHHhc------------------------cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhh
Confidence 01112222233333221 126777899999999999999999998898999887552
Q ss_pred cCCCCChHHHHHHHHHhcC
Q 005891 188 NSPSVDYGRMAEILVQRAA 206 (671)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~ 206 (671)
. .......++..++...+
T Consensus 120 ~-~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 120 D-SPEELEQVLSDLLSILK 137 (193)
T ss_pred c-CHHHHHHHHHHHHHHHH
Confidence 1 11224445555544443
No 287
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=61.83 E-value=1.1e+02 Score=34.08 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=64.8
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHh--chHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhhcCC
Q 005891 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSP 190 (671)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~--~Lp~fL~gLf~lL~D-~~~eVR~~a~~~L~~ll~~I~~~~ 190 (671)
..|-.|+.|+...+|.|-..+++.+.-+..-.|.-+-. .=-.|...|.+++.| ..+.|+......+.+..+++++.|
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 34566788999999999999999888887777655432 123466666677874 678899998899999999998776
Q ss_pred CCC-hHHHHHHHHH
Q 005891 191 SVD-YGRMAEILVQ 203 (671)
Q Consensus 191 ~~d-~~~iI~iLl~ 203 (671)
..+ +..+...|..
T Consensus 125 ~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 125 SLSLISALYKKLKE 138 (462)
T ss_pred chhHHHHHHHHHHH
Confidence 554 3444444443
No 288
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=61.82 E-value=3e+02 Score=31.71 Aligned_cols=339 Identities=16% Similarity=0.109 Sum_probs=183.2
Q ss_pred HHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhh--hhHHHHHHH----------HHHhhcCC
Q 005891 18 LYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDA----------LCKLSADS 85 (671)
Q Consensus 18 ~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il--~~f~eIf~~----------L~kL~~D~ 85 (671)
.+|..+.-...|+..+...|-.|++|.++.+..+++..+|.+.-....+.. ++-.++.++ .-...-|.
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs 360 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDS 360 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhh
Confidence 667777777889999999999999999999999999999988644321110 111122222 11222232
Q ss_pred ch-HHHHHHHHHHHHHHHhhcccc---hhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchh-HHhchHHHHHH
Q 005891 86 DA-NVQSAAHLLDRLVKDIVTESD---QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDG 159 (671)
Q Consensus 86 d~-~Vr~gA~~LdrllKdIv~e~~---~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~-li~~Lp~fL~g 159 (671)
.- ..+.++ -|++.. |..+.- +.+-....|.++.-..| .|--+|..++-.+.++.-.|+.. -..+.-.-..+
T Consensus 361 ~~~Tl~~s~--Cdals~-i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~ 437 (728)
T KOG4535|consen 361 EHPTLQASA--CDALSS-ILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANA 437 (728)
T ss_pred cCCCchhHH--HHHHhh-cCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHH
Confidence 21 222222 222222 222110 01112334444443333 55567777777766666555533 23455556667
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHh-hcCCCCC------hHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhhcCc
Q 005891 160 LFNMLSDSSHEIRQQADSALWEFLQEI-KNSPSVD------YGRMAEILVQRAAS---PDEFTRLTAITWINEFVKLGGD 229 (671)
Q Consensus 160 Lf~lL~D~~~eVR~~a~~~L~~ll~~I-~~~~~~d------~~~iI~iLl~~~~s---~d~~irl~al~WI~~~~~l~~~ 229 (671)
....+.|..-.+|..+.=.++.+...+ .+.|.+| .+..+..++..... .++.++-.|.+.+.+..++...
T Consensus 438 il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~ 517 (728)
T KOG4535|consen 438 ILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP 517 (728)
T ss_pred HHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH
Confidence 777888888888877666666665543 3344544 23334444433222 2456777788877777665432
Q ss_pred CcccchHhHHHHHhhhhcCCc-----HhHHHHHHHHHHHHHHhcCCCCCCCCh-HhHHHHHHHhcC-CCcHHHHHHHHHH
Q 005891 230 QLVPYYADILGAILPCISDKE-----EKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLS-SEWEATRIEALHW 302 (671)
Q Consensus 230 ~l~pflp~LLp~LL~~Lsd~~-----~eIR~~A~~~n~~L~~~i~~~~~~~dl-~~il~~L~~~L~-~~~~~tRiaaL~W 302 (671)
..-+-+..++.+-...+.+.+ ..+|--|+-+.+.|.+--.-+-..-+. +.+.++|...+. ..|..+|+.|--.
T Consensus 518 i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~a 597 (728)
T KOG4535|consen 518 IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAA 597 (728)
T ss_pred hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhh
Confidence 222234445554444444433 356666666666654331110011222 466677776664 4566677776665
Q ss_pred HHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---hccchHHHHHHHHHhhccc
Q 005891 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA---KDLQHFRQLVVFLVHNFRV 367 (671)
Q Consensus 303 L~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is---~~~~~F~~fm~~LL~lf~~ 367 (671)
|.. -+.+++...+++-....++..| |+++.+..+..+. +-...|-..+.+++.+.+.
T Consensus 598 L~v--p~~re~~~d~~~Lsw~~lv~aL------i~s~~~v~f~eY~~~Dsl~~q~c~av~hll~la~S 657 (728)
T KOG4535|consen 598 LSV--PGKREQYGDQYALSWNALVTAL------QKSEDTIDFLEYKYCDSLRTQICQALIHLLSLASS 657 (728)
T ss_pred hcC--CCCcccchhHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 543 3445566666655555554433 4455555554444 2245566777777776643
No 289
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=61.81 E-value=82 Score=28.63 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=46.7
Q ss_pred hHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC-HH-HHHHHHHHHHHHhhcc
Q 005891 277 VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DE-VVLLVLEVHACIAKDL 351 (671)
Q Consensus 277 l~~il~~L~~~L~-~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s-~e-V~~~~l~lLa~Is~~~ 351 (671)
+..++|.+...+. +...+.|.+|+.-+..|..+. +..++++..+++++...- +. ....++-++..+...+
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-----~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-----PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-----CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3567888888888 667888999999999999988 445555555555543221 11 1355677777777433
No 290
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=61.46 E-value=72 Score=30.46 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=59.1
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hhHHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD-PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~--l~~l~p~LL~~LsD-~s~eV~~~~l~lLa~Is 348 (671)
-.+.+..|.+.+.+.+..+.+.||.-|-.+...|+..+-.. ..+++..|.+.+++ ..+.|+.+.+.++..-+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 46888899999999999999999999999999999876532 23466677777777 67889999998887766
No 291
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=61.41 E-value=25 Score=31.45 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=54.7
Q ss_pred hhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcch-hhhhHHHHHHHHHHhhcCC
Q 005891 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKLSADS 85 (671)
Q Consensus 25 ~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~-il~~f~eIf~~L~kL~~D~ 85 (671)
.+.+|.+.++.-+..+++.=++.||.-|..-+.-+.+.+.++ +..+|..+++.++.+++-.
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 457899999999999999999999999999999999998888 6688999999999988765
No 292
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=60.82 E-value=61 Score=34.14 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhhcCcCcccch--HhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHh
Q 005891 210 EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 287 (671)
Q Consensus 210 ~~irl~al~WI~~~~~l~~~~l~pfl--p~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~ 287 (671)
|..|++++.-|+.+++....+.+.|+ .+++|..++.|....+--|.+|.-..+.++.. +.-++.+.+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~d----------d~GL~yiC~- 178 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLD----------DVGLNYICQ- 178 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS----------HHHHHHHTS-
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc----------hhHHHHHhc-
Confidence 56899999999999998776666663 57899999999877666666666554443311 111111111
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccc
Q 005891 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRV 367 (671)
Q Consensus 288 L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~ 367 (671)
.. .|-.++. .-+..++..+ ..++++.+.+...++..++|+|..--+.+-..|...+++
T Consensus 179 ----t~-eRf~av~--------------~vL~~mV~~l---~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~~Lrd 236 (262)
T PF04078_consen 179 ----TA-ERFFAVA--------------MVLNKMVEQL---VKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPDQLRD 236 (262)
T ss_dssp ----SH-HHHHHHH--------------HHHHHHHHHH---HHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-GGGTS
T ss_pred ----CH-HHHHHHH--------------HHHHHHHHHH---ccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcHHHhc
Confidence 11 1222221 1122222222 347788888889999999998776666666666666665
Q ss_pred c--chhhhhH--HHHHHHHHhccCC
Q 005891 368 D--NSLLEKR--GALIIRRLCVLLD 388 (671)
Q Consensus 368 d--~~lLe~R--g~~IIR~Lc~~L~ 388 (671)
+ ...+++= ..-+..||..+++
T Consensus 237 ~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 237 GTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp STTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 5 3333221 1225556655544
No 293
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.60 E-value=17 Score=33.74 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhhcCCC-CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005891 155 DFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPS-VDYGRMAEILVQRAASPDEFTRLTAITWINEFV 224 (671)
Q Consensus 155 ~fL~gLf~lL~D-~~~eVR~~a~~~L~~ll~~I~~~~~-~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~ 224 (671)
+++..|.++|.. .++.+-..||.=++.|++..++... ++--..-+.+.+.+.++|++||..|+..++.++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 346666777733 3666777788888888887643100 011234456778889999999999999888765
No 294
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=60.05 E-value=1.1e+02 Score=30.89 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=56.7
Q ss_pred HhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 005891 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (671)
Q Consensus 150 i~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~ 229 (671)
...-|.+.+.+.++..|.+.=+|+.|+-+. +.-++ ..|.+.+..++...+.+++..|+...=-++.++.+-.++
T Consensus 110 ~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~---l~~~~---~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 110 LADYPEFEPVMDEWSTDENFWLRRTAILHQ---LKYKE---KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred HhCChhHHHHHHHHHcCCcHHHHHHHHHHH---HHHHH---ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 455667778888999999999999886643 33332 256778888888888888888888544456666666666
Q ss_pred Ccccch
Q 005891 230 QLVPYY 235 (671)
Q Consensus 230 ~l~pfl 235 (671)
.+..|+
T Consensus 184 ~V~~fl 189 (208)
T cd07064 184 WVRDFV 189 (208)
T ss_pred HHHHHH
Confidence 665554
No 295
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=60.00 E-value=29 Score=34.17 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=33.9
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf 161 (671)
...-+.+|...+ .++.||.+||+++.. .++.++..|||.+++.|-
T Consensus 71 ~~~aLeLL~~~f--~d~~VR~yAV~~L~~---~sd~eL~~yL~QLVQaLK 115 (171)
T cd00872 71 PEQALELLDCNF--PDEHVREFAVRCLEK---LSDDELLQYLLQLVQVLK 115 (171)
T ss_pred HHHHHHHCCCcC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 344455554444 469999999999865 678899999999999764
No 296
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=59.63 E-value=1.6e+02 Score=27.93 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=56.3
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD------~s~eV~~~~l~lLa~Is 348 (671)
...+..+...+.+.+....+-||.-|-.+...|+..+-... .+++..+++.+++ ..+.|+.+.+.++..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999998875333 2355567777753 56899999998876655
No 297
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=59.59 E-value=36 Score=32.79 Aligned_cols=44 Identities=30% Similarity=0.526 Sum_probs=33.2
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHH
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gL 160 (671)
...-+.+|...+ .++.||++++.++.. .++.++..|+|.+.+.|
T Consensus 71 ~~~aL~LL~~~~--~~~~vr~yAv~~L~~---~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 71 PEDALELLSPKY--PDPVVRQYAVRVLES---ASDDELLLYLPQLVQAL 114 (152)
T ss_pred HHHHHHHcCCcC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 344455554443 459999999998865 77889999999999966
No 298
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=59.23 E-value=4.5e+02 Score=32.92 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=107.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH-----------------HH
Q 005891 158 DGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-----------------WI 220 (671)
Q Consensus 158 ~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~-----------------WI 220 (671)
+-+++---|..+.||.+|...+..+++..+. ..-.+|+..+++.+.++-.-++..+.. |+
T Consensus 475 ~~~~~rClDkaaavR~~al~s~tk~l~l~~~---~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l 551 (1529)
T KOG0413|consen 475 NIVYMRCLDKAAAVRLHALNSLTKILQLQSH---REAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL 551 (1529)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc---cchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence 3345555788999999998888888876643 334556666666555443222221111 11
Q ss_pred H---HHHh-----hcCcCcccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCC
Q 005891 221 N---EFVK-----LGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE 291 (671)
Q Consensus 221 ~---~~~~-----l~~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~ 291 (671)
. +++. +.+..---|-..++-.|+..+. |+...+|..|.....+....+.. .--++.++-+|..+..+.
T Consensus 552 ~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~---~~~fe~~L~iLq~lCrd~ 628 (1529)
T KOG0413|consen 552 LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE---ASKFEVVLSILQMLCRDR 628 (1529)
T ss_pred CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccch---hhcchhHHHHHHHHhcCc
Confidence 0 0000 0011101134455666777776 66667888777766665544432 112456688888888998
Q ss_pred cHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005891 292 WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (671)
Q Consensus 292 ~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~ 346 (671)
....|-.+++-|..+...-|.-+ .....-+-.|...+.|....|...++.++.+
T Consensus 629 ~vsvrk~~~~Sltel~~~~pr~~-~~~~~wl~~li~~~~d~es~v~e~a~~~i~k 682 (1529)
T KOG0413|consen 629 MVSVRKTGADSLTELMLRDPRLF-SLSSKWLHTLISMLNDTESDVTEHARKLIMK 682 (1529)
T ss_pred chHHHHHHHHHHHHHHhhCchhh-hhhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88889888888888877766654 3334445556666667776776666654433
No 299
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=59.20 E-value=4.7e+02 Score=33.17 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhc-------c--hhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHH------HHHHhhcccchhhhh
Q 005891 50 YYACEALYNIAKVVR-------G--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDR------LVKDIVTESDQFSIE 113 (671)
Q Consensus 50 ~~A~eaL~nI~Kv~~-------~--~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~Ldr------llKdIv~e~~~f~L~ 113 (671)
..+.+|+.|+++.-. . ..++.|+-++..| ....++.+..-| +.+.+ .+.++++ .
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~l---r~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-------~ 1812 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYL---RCRKHPKLQILALQVILLATANKECVTDLAT-------C 1812 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHH---HHcCCchHHHHHHHHHHHHhcccHHHHHHHh-------h
Confidence 456889999876432 1 2234543333332 234455555555 33322 2223332 1
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh--HHhc--hHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHH
Q 005891 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID--MLGF--LPDFLDGLFNML-SDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~--li~~--Lp~fL~gLf~lL-~D~~~eVR~~a~~~L~~ll~ 184 (671)
..+-.|...++ .-|..|+.++..++.+.+.+.+. -..+ +-.+++ ++ .-++..+|.+|.+.++++..
T Consensus 1813 ~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~----~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1813 NVLTTLLTLLH-SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILS----ILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred hHHHHHHHHHh-cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhH----HHhccCcHHHHHHHHHHHHHhhh
Confidence 13344444444 57889999999999999887643 1221 222222 22 23567889888888887764
No 300
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=57.89 E-value=3.2e+02 Score=30.79 Aligned_cols=235 Identities=18% Similarity=0.245 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHH--HHHHhhhhhHHhHh-hhHHHHHhccCCCCHHHHHHHHHHHHHHH-HH--hcchhhhhHHHHHH
Q 005891 3 KWYSFLFEIIVEQFL--LYADLFFYSETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIA-KV--VRGDFIIFFNQIFD 76 (671)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~yl~-~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~-Kv--~~~~il~~f~eIf~ 76 (671)
.+|-|..-|++.-.- ++|+ .|.+ ..+-.++..|...|+|-|.+--..+.+|- |. ++.-+....|.||
T Consensus 151 lvye~~Lrf~~sp~~d~~vaK------~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif- 223 (457)
T KOG2085|consen 151 LVYEFLLRFLESPDFDPSVAK------KYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIF- 223 (457)
T ss_pred HHHHHHHHHHhCcccCHHHHH------HHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchh-
Confidence 467777777665432 3333 3443 35667788899999999999988888884 22 1222322333333
Q ss_pred HHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH------
Q 005891 77 ALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM------ 149 (671)
Q Consensus 77 ~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~l------ 149 (671)
.+.+-.++.. +|. ++|.-+ -.|+. .|+++ -....+.|++..+--+.++-...+
T Consensus 224 --~~FIyEte~h--nGIaELLEIl-gSiIn---gfAlP------------lKEEhkiFL~rvLipLhk~k~l~~yh~QLa 283 (457)
T KOG2085|consen 224 --LRFIYETERH--NGIAELLEIL-GSIIN---GFALP------------LKEEHKLFLVRVLIPLHKPKSLSLYHKQLA 283 (457)
T ss_pred --hhhccccccc--CCHHHHHHHH-HHhcC---cccCc------------chhHHHHHHHHhhhccccCCCccccccccc
Confidence 3334444442 344 333222 22221 12211 123455555555544444322211
Q ss_pred ----------HhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHH----HHHHHHHhcCCCCHHHHHH
Q 005891 150 ----------LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR----MAEILVQRAASPDEFTRLT 215 (671)
Q Consensus 150 ----------i~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~----iI~iLl~~~~s~d~~irl~ 215 (671)
-..-|..+.||.++---++..=+.+-..-+++.++.+.- ..+++ +...+-.|..+++..+...
T Consensus 284 YcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep---~eFqk~~~PLf~qia~c~sS~HFQVAEr 360 (457)
T KOG2085|consen 284 YCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEP---SEFQKIMVPLFRQIARCVSSPHFQVAER 360 (457)
T ss_pred eeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCH---HHHHHHhHHHHHHHHHHcCChhHHHHHH
Confidence 113466678887765443332222223445555555531 23443 3445566778888889988
Q ss_pred HHH-HHHHH-HhhcCcCcccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHh
Q 005891 216 AIT-WINEF-VKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAI 267 (671)
Q Consensus 216 al~-WI~~~-~~l~~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~ 267 (671)
|+. |=.+. ..+-...---++|.+.|++-++.. +=+..|...+.++...++++
T Consensus 361 aL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~em 415 (457)
T KOG2085|consen 361 ALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEM 415 (457)
T ss_pred HHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887 65552 233333333357888888887765 33556666666666655544
No 301
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.60 E-value=46 Score=30.91 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=50.9
Q ss_pred HhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 278 GPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 278 ~~il~~L~~~L~~~-~~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
-+++..|.+.+..+ +..+-.-|..=|+.+.+.+|.+-.-- --+.-..++..+++++++|+..|+.++.++-
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 47888888888543 44555667788999999998864311 1235677889999999999999999988765
No 302
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=57.07 E-value=56 Score=29.22 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=46.3
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-HHhchHHHHHHHHHhcCCC
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDS 167 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~-li~~Lp~fL~gLf~lL~D~ 167 (671)
.+.++..+..-|...+|+||..++..+..+....+.. +..+...++++.+.+++-.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 5667777777888999999999999999998877777 6677888888888888665
No 303
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=56.91 E-value=2e+02 Score=28.06 Aligned_cols=112 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
...++.|.+.+. +..|+.+--.++..+-. .....-|.+ +-+..++.|++.=+|+.+..++-.+...
T Consensus 70 ~~~~~~~~~~i~---~~~~W~~~D~~~~~~~~-------~~~~~~~~~-~~~~~w~~s~~~~~rR~~~~~~~~~~~~--- 135 (197)
T cd06561 70 EEDLERFEPWIE---YIDNWDLVDSLCANLLG-------KLLYAEPEL-DLLEEWAKSENEWVRRAAIVLLLRLIKK--- 135 (197)
T ss_pred HHHHHHHHHHHc---CCchHHHHHHHHHHHHH-------HHHhcCcch-HHHHHHHhCCcHHHHHHHHHHHHHHHHh---
Confidence 445566666665 44666554444433322 111122222 5666789999999999888777666553
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchH
Q 005891 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (671)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp 236 (671)
.-+.+.+.+++-....++++.||..+-.++.++....++..++|+.
T Consensus 136 --~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 136 --ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred --cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 2467888888888888888888887766777666665555544443
No 304
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=56.61 E-value=3e+02 Score=30.11 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=45.1
Q ss_pred hHHHHHHHhcCCCcHHH-HHHHHHHHHHHHhhChhhHhhhhh-HHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005891 279 PILSIATRQLSSEWEAT-RIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVHACI 347 (671)
Q Consensus 279 ~il~~L~~~L~~~~~~t-RiaaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~LsD~s~eV~~~~l~lLa~I 347 (671)
+++..|.+.++..+..+ ---|..=+.++.+..|+...-... +.-..++..++.++|+|+..|++++..+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 67778888776543332 122445677888888876431111 2335577889999999999999877544
No 305
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=56.54 E-value=2.6e+02 Score=29.42 Aligned_cols=182 Identities=10% Similarity=0.156 Sum_probs=103.6
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcch--------hhhhHHHHHHHHHHhhcCCc-----hHHHHHHHHH
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD--------FIIFFNQIFDALCKLSADSD-----ANVQSAAHLL 96 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~--------il~~f~eIf~~L~kL~~D~d-----~~Vr~gA~~L 96 (671)
.+.+.+-+++++.-+...-+ +.+.+..+++..... .+-.+--.+|-+..-+.+++ +.+++.|+.+
T Consensus 62 f~Glq~Ll~KGL~Ss~t~e~--tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 62 FEGLQPLLLKGLRSSSTYEL--TLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred chhHHHHHhCccCCCCcHHH--HHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 34466677777765553322 233333344332111 11223355666666666665 6788888888
Q ss_pred HHHHHHhhcccchhhhhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHH-hchHHHHHHHHHhcCCCChHHHHH
Q 005891 97 DRLVKDIVTESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDML-GFLPDFLDGLFNMLSDSSHEIRQQ 174 (671)
Q Consensus 97 drllKdIv~e~~~f~L~~fIP~L~e~i~-~~np~vR~~alswL~~L~~ip~~~li-~~Lp~fL~gLf~lL~D~~~eVR~~ 174 (671)
...+++ .+..++..++-.....-+ +.+.++++.+ +.|. .... .|--..+.-|..++....+.+|..
T Consensus 140 a~~a~~----~~~~~La~il~~ya~~~fr~~~dfl~~v~-~~l~-------~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 140 AQVAEA----QGLPNLARILSSYAKGRFRDKDDFLSQVV-SYLR-------EAFFPDHEFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHHHh----CCCccHHHHHHHHHhcCCCCHHHHHHHHH-HHHH-------HHhCchhHHHHHHHHHHHHhCCcHHHHHH
Confidence 777752 223356666666654444 2333333322 1111 1111 122223444567888889999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 005891 175 ADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (671)
Q Consensus 175 a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~ 229 (671)
+-+.|..+++.+.-.. ....+++..++..++++.+.- |++-+.+.+..+|.
T Consensus 208 ~L~iL~~ll~~~d~~~-~~~~dlispllrlL~t~~~~e---AL~VLd~~v~~s~s 258 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRS-PHGADLISPLLRLLQTDLWME---ALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHHHhccccCCC-CcchHHHHHHHHHhCCccHHH---HHHHHHHHHhhccc
Confidence 9999999998775432 245678888898888766554 45555566666553
No 306
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=56.45 E-value=1.1e+02 Score=28.62 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=56.8
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhh--HHHHHHHHhcCC---CCHHHHHHHHHHHHHHh
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSD---PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD---~s~eV~~~~l~lLa~Is 348 (671)
-.+.+..|...+.+.+..+.+.||.-|-.+...|+..+...+. +.+..+.+.++. .+++|+.+.++++..-+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999999987743322 344456666665 36789999998876665
No 307
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=56.24 E-value=1.2e+02 Score=35.56 Aligned_cols=93 Identities=27% Similarity=0.396 Sum_probs=66.4
Q ss_pred HHHHHHHhccCChH--------------HHHHHHHHhhcccCChhHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcch
Q 005891 377 ALIIRRLCVLLDAE--------------RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAG 442 (671)
Q Consensus 377 ~~IIR~Lc~~L~~E--------------~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~ 442 (671)
.-+|+||....+.+ .+|.+++++| .+++|-.|..+-...|++ +
T Consensus 128 ~n~v~QLaaly~~~~~~~~~~~~~v~l~~vf~~lg~lL-----------------~vlvtlDeIi~~n~~L~~------~ 184 (567)
T PF14745_consen 128 KNLVQQLAALYSSQKAPKPIDFKGVHLQTVFDHLGELL-----------------RVLVTLDEIIEQNPSLRD------H 184 (567)
T ss_pred HHHHHHHHHHHcccccCCccccCCccHHHHHHHHHHHH-----------------HHHHHHHHHHHhhHHHHH------H
Confidence 34788888777653 5566666665 455566677676677765 7
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHHH-----HhhchhhHHHHHhhcCC
Q 005891 443 KDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIR-----LLETPIFAYLRLQLLEP 515 (671)
Q Consensus 443 ~~lF~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~~~~e~~~~~l~q~d~Lvq-----llEspif~~lRl~Ll~~ 515 (671)
|..|....+++.||| +..+++.+-|-++|+++. +++..+|...==|+.+.
T Consensus 185 w~~ykr~l~~v~~np-----------------------~~f~~~~~~l~~le~ll~~le~~ll~g~iF~~~~eq~fd~ 239 (567)
T PF14745_consen 185 WSLYKRMLKSVRHNP-----------------------SKFGVTEEKLRQLEKLLADLEGQLLDGNIFQRCLEQLFDD 239 (567)
T ss_pred HHHHHHHHHHHhcCh-----------------------hhcCCCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccc
Confidence 999999999999999 344677888888888885 55556776665566663
No 308
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.70 E-value=5e+02 Score=34.06 Aligned_cols=248 Identities=16% Similarity=0.205 Sum_probs=130.8
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch-
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ- 109 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~- 109 (671)
.+.|-...-....+..||.-..+++. ..+-.-|..||..+-....|...+.-..+ +.+...+.+.....-+
T Consensus 1037 fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~ 1109 (1514)
T KOG0929|consen 1037 FLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQ 1109 (1514)
T ss_pred hcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchh
Confidence 34454555556778888877666544 22333478888888877777766555445 4444444433322101
Q ss_pred --hhhhhhHHHHHHhhcC-CCHHHHHHHHHHHH----Hhhc------CC-------chhHHhchHHHHHHHHHhcCCCCh
Q 005891 110 --FSIEEFIPLLRERMNV-LNPYVRQFLVGWIT----VLDS------VP-------DIDMLGFLPDFLDGLFNMLSDSSH 169 (671)
Q Consensus 110 --f~L~~fIP~L~e~i~~-~np~vR~~alswL~----~L~~------ip-------~~~li~~Lp~fL~gLf~lL~D~~~ 169 (671)
.++...++-+.+.... ..+..-.-++.-+. .+.. .. +...-.|+|.++. +-....|...
T Consensus 1110 ~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~-ls~i~~~~~~ 1188 (1514)
T KOG0929|consen 1110 EMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQ-LSKIINDYRL 1188 (1514)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhh-hhHHhhccHH
Confidence 2334445555555442 12211111111111 1111 11 1123346666654 4455559999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCC----C-CHHH-----HHHHHHHHHHHHhhc---CcCcccch
Q 005891 170 EIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAAS----P-DEFT-----RLTAITWINEFVKLG---GDQLVPYY 235 (671)
Q Consensus 170 eVR~~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~s----~-d~~i-----rl~al~WI~~~~~l~---~~~l~pfl 235 (671)
+||+.+-+.+-..+.+-+.....+ ++.+.. ++-.+-+ + +... ..|+.+.+..++.+. -..+-+-+
T Consensus 1189 ~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL 1267 (1514)
T KOG0929|consen 1189 EVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLL 1267 (1514)
T ss_pred HHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877544333 455555 3222211 1 1111 122222333333331 12233458
Q ss_pred HhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhc
Q 005891 236 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL 288 (671)
Q Consensus 236 p~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L 288 (671)
|+++..+..|..-++..+-.....|...|....+..-..-+.+++.+.+.+-+
T Consensus 1268 ~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1268 PKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred HHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 88888888888888888777777777777655443222223455555555444
No 309
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=53.56 E-value=7.9e+02 Score=34.06 Aligned_cols=77 Identities=25% Similarity=0.252 Sum_probs=53.7
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
++.-+-.+.+...+....-|..++-.+..+..-.+.-+.++++.|+++++.-..|+++.+|..|+.++....-....
T Consensus 132 v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~ 208 (2341)
T KOG0891|consen 132 VDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQ 208 (2341)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhh
Confidence 33334444444433333334444444455555556678899999999999999999999999999999998876653
No 310
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=53.29 E-value=1.1e+02 Score=28.81 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=54.5
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCCCC--HH--HHHHHHHHHHHHh
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPS--DE--VVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s--~e--V~~~~l~lLa~Is 348 (671)
-.+.+..|.+.+.+.+..+..-||.-+-.+...|+..+...+ ..++..|.+.++++. +. |+.+.+.++..-+
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 368889999999999999999999999999999998775332 234555555454433 22 8889998877666
No 311
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=53.26 E-value=4.6e+02 Score=31.27 Aligned_cols=204 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred hHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCC---------------CChHhHHHHHHHhcC-CCcHHHHHH
Q 005891 235 YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---------------FDVGPILSIATRQLS-SEWEATRIE 298 (671)
Q Consensus 235 lp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~---------------~dl~~il~~L~~~L~-~~~~~tRia 298 (671)
.|..+|-+...-. ..-++-+-..-+...|.+-+-+.+++ ..++++.....+-+. +.++..-+|
T Consensus 134 WP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~A 212 (1053)
T COG5101 134 WPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEA 212 (1053)
T ss_pred cchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHH
Q ss_pred HHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----------hccchHHHHHHHHHhhcccc
Q 005891 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----------KDLQHFRQLVVFLVHNFRVD 368 (671)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is----------~~~~~F~~fm~~LL~lf~~d 368 (671)
.|.-+..+.+-.|-+.. |.-+++..++..+. ..|.-|-.++.+|.+|+ +.+..|.-+.+.....-...
T Consensus 213 TLesllrfl~wiPl~yI-feTnIieLv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s 290 (1053)
T COG5101 213 TLESLLRFLEWIPLDYI-FETNIIELVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYS 290 (1053)
T ss_pred HHHHHHHHHhhCchhHH-HHHHHHHHHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHh
Q ss_pred chhhhhHHHHHHHHHhccCChHHHHHHHHHhhcccCChhHHHHHHHHHHHH------hccchhHHHH----HHHHHhccC
Q 005891 369 NSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLI------LLTSSELSEL----RDLLKKSLV 438 (671)
Q Consensus 369 ~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~i------LLTs~El~~l----R~~L~~~l~ 438 (671)
.+-++++ +|.+-+. .+..+-.|+.+..|.|+.. ||-++|.++. -.-|-+ +.
T Consensus 291 ~~p~~~d----------------~~e~Y~~--~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiq-iS 351 (1053)
T COG5101 291 NKPQEED----------------IYEVYGG--MDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQ-IS 351 (1053)
T ss_pred ccchHHH----------------HHHHHcc--cChhHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh-hh
Q ss_pred CcchHHHHHHHHHhhccChHHHH
Q 005891 439 NPAGKDLFVSLYASWCHSPMAII 461 (671)
Q Consensus 439 ~~~~~~lF~~L~~~w~~n~vs~l 461 (671)
.-+.+++|.+-+.-| |+-||-|
T Consensus 352 rInereiFkt~leyW-~klVadL 373 (1053)
T COG5101 352 RINEREIFKTALEYW-NKLVADL 373 (1053)
T ss_pred hccHHHHHHHHHHHH-HHHHHHH
No 312
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=53.16 E-value=1.6e+02 Score=30.94 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcCcccc--hHhHHHHHhhhhcCCcHhHHHHHHHHHH
Q 005891 208 PDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEEKIRVVARETNE 262 (671)
Q Consensus 208 ~d~~irl~al~WI~~~~~l~~~~l~pf--lp~LLp~LL~~Lsd~~~eIR~~A~~~n~ 262 (671)
+.|-.|++++.-|..+++.+...+..| ..+++|..++.|....+.-+.+|.-..+
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlq 193 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQ 193 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHH
Confidence 457799999999999999988877776 4689999999998877777776665544
No 313
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=52.91 E-value=14 Score=24.95 Aligned_cols=29 Identities=31% Similarity=0.213 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC
Q 005891 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (671)
Q Consensus 46 ~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D 84 (671)
+.||+.|+++|.++.. ++.++.|.+++.|
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhcC
Confidence 4699999999988731 3455666666655
No 314
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=52.87 E-value=2.6e+02 Score=28.21 Aligned_cols=179 Identities=17% Similarity=0.159 Sum_probs=96.6
Q ss_pred HhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 005891 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (671)
Q Consensus 150 i~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~ 229 (671)
...+..|+..-+.+++=+.|++|+.+-. +.+..+. .+.+.....+....+++..+.|..|+.++...-....
T Consensus 7 a~~m~~y~k~~~~f~Gv~~P~~R~lak~----~~~~~~~---~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~- 78 (208)
T cd07064 7 AAAMKAYMKNQFPFYGIKTPERRALSKP----FLKESKL---PDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLT- 78 (208)
T ss_pred HHHHHHHHhcCCccCCCChHHHHHHHHH----HHHHcCC---CcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCC-
Confidence 3445555666667888889999988743 3333321 1234444444555667667899999988866443322
Q ss_pred CcccchHhHHHHHhhhhcCCc--HhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCc-HHHHHHHHHHHHHH
Q 005891 230 QLVPYYADILGAILPCISDKE--EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW-EATRIEALHWISTL 306 (671)
Q Consensus 230 ~l~pflp~LLp~LL~~Lsd~~--~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~-~~tRiaaL~WL~~L 306 (671)
+.-++.+...+.+-+ .-+=..|..+.+.+. . +.+...+.+.+-..+++ |.-|.+.+..+...
T Consensus 79 ------~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~---~------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~ 143 (208)
T cd07064 79 ------PEDLPLLEELITTKSWWDTVDSLAKVVGGILL---A------DYPEFEPVMDEWSTDENFWLRRTAILHQLKYK 143 (208)
T ss_pred ------HHHHHHHHHHHcCCchHHHHHHHHHHHhHHHH---h------CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 222344444433321 111112222222221 1 12333455555556666 66666665433322
Q ss_pred HhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHH
Q 005891 307 LNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLV 358 (671)
Q Consensus 307 ~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-~~~~F~~fm 358 (671)
-+. ..+.++..+...++|+..-|....-|.|..++. +.+--..|+
T Consensus 144 ~~~-------~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 144 EKT-------DTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred Hcc-------CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 221 134566667777778777777777899999995 333334444
No 315
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.74 E-value=7.5e+02 Score=33.27 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=134.5
Q ss_pred hhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHH-HHHHHHHhhcC-CCCChHHHHH
Q 005891 122 RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA-LWEFLQEIKNS-PSVDYGRMAE 199 (671)
Q Consensus 122 ~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~-L~~ll~~I~~~-~~~d~~~iI~ 199 (671)
-+-.++|..|-.+...+..+..+.+. .+++-...+..|+-+.+....|++..... ++-+.+..+.. +.-++..-+.
T Consensus 884 sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~ 961 (2067)
T KOG1822|consen 884 SLINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVS 961 (2067)
T ss_pred hhccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHH
Confidence 34468899998888888888776553 34556667777777877776676664443 33333333321 1123444455
Q ss_pred HHHHhcCCCC-HHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcC---CcHhHHHHHHHHHH------HHHHhcC
Q 005891 200 ILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD---KEEKIRVVARETNE------ELRAIKA 269 (671)
Q Consensus 200 iLl~~~~s~d-~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd---~~~eIR~~A~~~n~------~L~~~i~ 269 (671)
+|+...++++ +.++.-++..+..+.+-.+.-+.-|....+..+++.+-. .+-+++..-.+++. .+...++
T Consensus 962 illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlg 1041 (2067)
T KOG1822|consen 962 ILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLG 1041 (2067)
T ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcc
Confidence 8888777775 488888888887777766666666777777777776542 23445544444443 3333333
Q ss_pred CC-CCCC--C----h-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHH
Q 005891 270 DP-ADGF--D----V-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVL 341 (671)
Q Consensus 270 ~~-~~~~--d----l-~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l 341 (671)
.. +.+. | + ...+-...-.+.+++.....+++.-+.+++--.|..+ ..+.+++.+-..++-+---.|..+.
T Consensus 1042 peL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~--n~~~lV~~L~~~l~s~~~i~r~~~~ 1119 (2067)
T KOG1822|consen 1042 PELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV--NLDSLVLQLCSLLSSSYLILRRASF 1119 (2067)
T ss_pred cccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc--cHHHHHHHHHHHhcchhhhhhhhHH
Confidence 21 1111 1 1 1223334445556677778888888888888887753 4788888887777654433344444
Q ss_pred HHHHHHh
Q 005891 342 EVHACIA 348 (671)
Q Consensus 342 ~lLa~Is 348 (671)
..+.++.
T Consensus 1120 ~clrql~ 1126 (2067)
T KOG1822|consen 1120 SCLRQLV 1126 (2067)
T ss_pred hhhhHHh
Confidence 4444444
No 316
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.41 E-value=8.3e+02 Score=33.63 Aligned_cols=202 Identities=15% Similarity=0.201 Sum_probs=107.7
Q ss_pred hhHHhchHHHHHHHHHhcCCC---ChHHHH---HHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005891 147 IDMLGFLPDFLDGLFNMLSDS---SHEIRQ---QADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWI 220 (671)
Q Consensus 147 ~~li~~Lp~fL~gLf~lL~D~---~~eVR~---~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI 220 (671)
..+..+++..+-|+++..+-- ....+. .|.+++..+..-.+.....-...-|+.++....-..++.+..|+...
T Consensus 866 e~~~~fl~~~llgil~~f~~~l~~~~~~~~~k~~tl~~I~~~i~~~g~~~v~~~~~~i~~~L~~~~~~~~~l~~~~~~~w 945 (2382)
T KOG0890|consen 866 ELFQDFLQNHLLGILAVFSSRLLEPSTIIEQKKKTLKGIKKLISFMGSKAVSTRLPKIEFLLQFGTLFKDELRFLALKAW 945 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHhHHHHHhhccHHHHHHHhHHHHHHHHHhhhcchhHHHHHHHHH
Confidence 447778888888887655332 333333 34444444444333211111233344444442223455666655533
Q ss_pred HHHHhh-cCcCcccchHh-HHHHHhhhhcCCcHh-HHHHHHH----HHHHHHHhcCCC----------------------
Q 005891 221 NEFVKL-GGDQLVPYYAD-ILGAILPCISDKEEK-IRVVARE----TNEELRAIKADP---------------------- 271 (671)
Q Consensus 221 ~~~~~l-~~~~l~pflp~-LLp~LL~~Lsd~~~e-IR~~A~~----~n~~L~~~i~~~---------------------- 271 (671)
..|+.. .....-+.++. +++.++|.+.+...+ +-..... ....+.....+.
T Consensus 946 ~~f~r~l~~~~~~~~~~~~i~~~l~p~l~~~~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~~~~r~~ 1025 (2382)
T KOG0890|consen 946 HIFIRILNDNEKSDILDRNIIAALFPLLEHIELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAIQEARGL 1025 (2382)
T ss_pred HHHHHHHhhhhhcchhhhHHHHHHHHHhccccHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHHHHHHhh
Confidence 344443 33333445666 688888887543322 2222211 001111100000
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC--------hhhHh--hhhhHHHHHHHHhcCCCCHHHHHHHH
Q 005891 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH--------RTEVL--HFLNDIFDTLLKALSDPSDEVVLLVL 341 (671)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~--------p~~i~--~~l~~l~p~LL~~LsD~s~eV~~~~l 341 (671)
.+.-++...+......+.+++...|.-++.=+..+..+- ++.+. +-+..++..|++++.+...+....+.
T Consensus 1026 ~~~~~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~~~~~~a 1105 (2382)
T KOG0890|consen 1026 LSEDDLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQLEELCA 1105 (2382)
T ss_pred ccccchhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001145677778888888999999999998888776632 22222 45667778888877766656666666
Q ss_pred HHHHHHh
Q 005891 342 EVHACIA 348 (671)
Q Consensus 342 ~lLa~Is 348 (671)
+.|+.++
T Consensus 1106 kcLg~lg 1112 (2382)
T KOG0890|consen 1106 KCLGELG 1112 (2382)
T ss_pred HHHHhhh
Confidence 7777766
No 317
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=50.92 E-value=1.5e+02 Score=28.18 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=56.2
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hhHHHHHHHHhcC-CCCHHHHHHHHHHHHHHh
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALS-DPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~--l~~l~p~LL~~Ls-D~s~eV~~~~l~lLa~Is 348 (671)
-.+.+..|.+.+.+.+..+.+.||.-|-.+...|+..+-.. ..+++..|.+.++ ...+.|+.+.+.++..-+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 46888899999999999999999999999999998876432 2245555666665 466889999998876655
No 318
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=50.33 E-value=9 Score=25.67 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC
Q 005891 48 VRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (671)
Q Consensus 48 VR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D 84 (671)
||++|..+|.++.. ++.+|.|.+.+.|
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhcC
Confidence 79999999887752 4566666665543
No 319
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=49.73 E-value=56 Score=32.04 Aligned_cols=45 Identities=29% Similarity=0.504 Sum_probs=34.9
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf 161 (671)
...-+.+|...+ .++.||.+||++|.. .++.++..|||.+++.|-
T Consensus 78 ~~~aLeLL~~~f--~~~~VR~yAV~~L~~---~sd~eL~~yL~QLVQaLK 122 (166)
T cd00870 78 IEDALELLSPYF--TNPVVRKYAVSRLKL---ASDEELLLYLLQLVQALK 122 (166)
T ss_pred HHHHHHHcCccC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 444455555444 479999999999985 678899999999999775
No 320
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=49.22 E-value=33 Score=30.17 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 131 RQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 131 R~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
|-.++-.+.-+...-+-++=+++|++|..|.+..+| ...|++.+.++|.+|-+.=
T Consensus 6 rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 6 RHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 455555566555554556666999999999999998 6689999999999998744
No 321
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.89 E-value=2.9e+02 Score=34.70 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=92.3
Q ss_pred hhhhhHHHHHHHHH-HhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005891 66 DFIIFFNQIFDALC-KLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144 (671)
Q Consensus 66 ~il~~f~eIf~~L~-kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~i 144 (671)
++...++.+|+.++ .=.-|.+++.|.-- +..+..-+..=++.|--..++-.+--.+.|.+-.||.-.+..+.-|...
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiC--iqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAIC--IQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHH--HHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 44456677777765 45689999999543 3333333333234566677888888999999999999999999877655
Q ss_pred Cc--hhHHhchHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005891 145 PD--IDMLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWI 220 (671)
Q Consensus 145 p~--~~li~~Lp~fL~gLf~lL-~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI 220 (671)
-. ..+-.+...|=+-+..|. .|-+..||......+..... . ...+ ++=+.++...+.+.+..++.+|.+.+
T Consensus 357 ~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~--~--g~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 357 DEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS--S--GLLS-DKDILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc--c--cccC-hhHHHHHHHHHhccCcchHHHHHHHH
Confidence 22 125556777777777777 56667777665332222211 0 0011 22344555666666777777666544
No 322
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=48.44 E-value=2.2e+02 Score=34.18 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=54.7
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhh-HHHHHHHHhcC-CCCHHHHHHHHHHHHHHh
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALS-DPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~-~l~p~LL~~Ls-D~s~eV~~~~l~lLa~Is 348 (671)
..++..|.+++.. ..+|+.+|..|+.+...-|.-+-...+ .+|+.||+||. |.+.-|+..++-+|..+-
T Consensus 69 K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 69 KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 5677778888875 468999999999999998877655444 68999999985 777888888887776554
No 323
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=47.97 E-value=1.6e+02 Score=28.37 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHHHhhChhhHhhhh----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----cchHHH
Q 005891 292 WEATRIEALHWISTLLNRHRTEVLHFL----------NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----LQHFRQ 356 (671)
Q Consensus 292 ~~~tRiaaL~WL~~L~~~~p~~i~~~l----------~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~-----~~~F~~ 356 (671)
....|.-+|+-+..+.+..+..+..+- +.+.|.+++.+..+++.|...+++++..+-.. ....+-
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999999999999888777332 46789999999877788888899887666631 122334
Q ss_pred HHHHHHh
Q 005891 357 LVVFLVH 363 (671)
Q Consensus 357 fm~~LL~ 363 (671)
|+..++.
T Consensus 115 ~l~~i~~ 121 (168)
T PF12783_consen 115 FLSHIIL 121 (168)
T ss_pred HHHHHHH
Confidence 5555555
No 324
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.55 E-value=1.2e+02 Score=36.29 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=19.1
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhh
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~ 319 (671)
+++...|...+..++...-..++..|....++.+.+....++
T Consensus 186 eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLd 227 (700)
T PRK12323 186 GHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTD 227 (700)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444444443333222222223555566666666555554444
No 325
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=47.34 E-value=1.7e+02 Score=26.20 Aligned_cols=75 Identities=21% Similarity=0.148 Sum_probs=49.9
Q ss_pred HHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhH--HHHHHHHHH-----hh-cCCchHHHH
Q 005891 20 ADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFF--NQIFDALCK-----LS-ADSDANVQS 91 (671)
Q Consensus 20 ~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f--~eIf~~L~k-----L~-~D~d~~Vr~ 91 (671)
+++-..-......++..+..-+.+++|++-+.|...+..++|.++.....++ +.....+++ .. .|.+..||+
T Consensus 25 ~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~ 104 (115)
T cd00197 25 CDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVRE 104 (115)
T ss_pred HHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHH
Confidence 3333332345667888999999999999999999999999999876443222 122223322 11 356778888
Q ss_pred HHH
Q 005891 92 AAH 94 (671)
Q Consensus 92 gA~ 94 (671)
-+.
T Consensus 105 k~~ 107 (115)
T cd00197 105 KAI 107 (115)
T ss_pred HHH
Confidence 773
No 326
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=46.63 E-value=2.8e+02 Score=27.87 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=66.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHHHhhc----c-cchh
Q 005891 40 SFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD----SDANVQSAAHLLDRLVKDIVT----E-SDQF 110 (671)
Q Consensus 40 ~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D----~d~~Vr~gA~~LdrllKdIv~----e-~~~f 110 (671)
...|+++..-..+|..|.|+++.-.+ ...++.+..+ ....+...+..+++++.-++. . ...-
T Consensus 3 ~i~~~~~~~adl~~MLLsNlT~~~~~---------~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~ 73 (192)
T PF04063_consen 3 YITDPKSPLADLACMLLSNLTRSDSG---------CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKD 73 (192)
T ss_pred eecCCCcchHHHHHHHHHHhccchHH---------HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCc
Confidence 45788888889999999999863222 1222222222 122223333445555555554 1 1233
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
..+.+.+.+...- .-|..|++++.- ..+.+ .+..|.-++.-++..-|..+..++...+=+
T Consensus 74 ~~~yla~vl~NlS--~~~~gR~~~l~~------------~~~~~-~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 74 NYDYLASVLANLS--QLPEGRQFFLDP------------QRYDG-PLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred chhHHHHHHHHhc--CCHHHHHHHhCc------------hhhhh-HHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 4566677766643 568888887611 11111 455555566666555555565656555533
No 327
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=46.15 E-value=82 Score=29.37 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHH
Q 005891 318 LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLV 358 (671)
Q Consensus 318 l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-~~~~F~~fm 358 (671)
..++...|++.|+|.++.|..++|++|..++. +...|...+
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~ 77 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKREL 77 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHH
Confidence 34688899999999999999999999999994 444555433
No 328
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=45.73 E-value=4.3e+02 Score=28.76 Aligned_cols=219 Identities=19% Similarity=0.251 Sum_probs=125.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHH-hhc-CCCCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc
Q 005891 159 GLFNMLSDSSHEIRQQADSALWEFLQE-IKN-SPSVD----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (671)
Q Consensus 159 gLf~lL~D~~~eVR~~a~~~L~~ll~~-I~~-~~~~d----~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~ 232 (671)
.|.+.+.|-.-+-|+-+..+...+++- ++. .+.++ -.++++.++..-.. -+++.++|=..+.+.+...
T Consensus 83 ~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe----- 156 (342)
T KOG1566|consen 83 LLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHE----- 156 (342)
T ss_pred HHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH-----
Confidence 344456666667777777777777652 221 11122 25677777777443 4677777666666555421
Q ss_pred cchHhHH------HHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC-CC--CCChHhHH-HHHHHhcCCCcHHHHHHHHHH
Q 005891 233 PYYADIL------GAILPCISDKEEKIRVVARETNEELRAIKADP-AD--GFDVGPIL-SIATRQLSSEWEATRIEALHW 302 (671)
Q Consensus 233 pflp~LL------p~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~-~~--~~dl~~il-~~L~~~L~~~~~~tRiaaL~W 302 (671)
++.+++ --....+.-+..+|-.-|-..+.+++.--+.. ++ .-+++.+. +.-...+.++++.||--++..
T Consensus 157 -~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl 235 (342)
T KOG1566|consen 157 -FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL 235 (342)
T ss_pred -HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence 122221 22333445555555555555555444321100 00 01344443 335556678999999999999
Q ss_pred HHHHHhhChh--hHhhhhh--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc----chH------HHHHHHHHhhcccc
Q 005891 303 ISTLLNRHRT--EVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKDL----QHF------RQLVVFLVHNFRVD 368 (671)
Q Consensus 303 L~~L~~~~p~--~i~~~l~--~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~----~~F------~~fm~~LL~lf~~d 368 (671)
++.+.-.-+. .|..|.. .=+..+...|.|++..+-..|..+..-...|. .-+ ++=+..+++-|++|
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d 315 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTD 315 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCC
Confidence 9998887654 4667776 66777888899999999888888777666432 111 11223344445444
Q ss_pred ----chhhhhHHHHHHHHHhc
Q 005891 369 ----NSLLEKRGALIIRRLCV 385 (671)
Q Consensus 369 ----~~lLe~Rg~~IIR~Lc~ 385 (671)
...+.+| +++|+++-.
T Consensus 316 ~~~DeqF~dEk-~~~i~eI~~ 335 (342)
T KOG1566|consen 316 RTEDEQFLDEK-AYLIKEIRQ 335 (342)
T ss_pred CCchhhhhhhH-HHHHHHHHh
Confidence 4566666 666666543
No 329
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=45.70 E-value=4.8e+02 Score=29.24 Aligned_cols=234 Identities=11% Similarity=0.055 Sum_probs=122.0
Q ss_pred HHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhH-
Q 005891 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDM- 149 (671)
Q Consensus 73 eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~l- 149 (671)
..+-.|..++..+|+.-|... ..|-++..-.... -.+-...+.-.+.+.++. ..+.--.-+++.++.+.+--...+
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~-r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL-RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 556667777888888777655 3333332211111 112223333333333332 222222223333333222111111
Q ss_pred HhchHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc-
Q 005891 150 LGFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG- 227 (671)
Q Consensus 150 i~~Lp~fL~gLf~lL~D~~-~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~- 227 (671)
-.|..-+...|+-+..-+. ......-..|+..|++.=. .-...++..|+.+--..+..-...-+.=+.++++..
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~ 287 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLP 287 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC
Confidence 0111111222222332222 2334444566666664111 114567777777776666555555566666666643
Q ss_pred CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHH--HHHHHhcCCCCCCCChHhHHHHHHHhc-----CCCcHHHHHHHH
Q 005891 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETN--EELRAIKADPADGFDVGPILSIATRQL-----SSEWEATRIEAL 300 (671)
Q Consensus 228 ~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n--~~L~~~i~~~~~~~dl~~il~~L~~~L-----~~~~~~tRiaaL 300 (671)
+..+.+....+...+-.|++..+..|-+.|...+ ..+...+.+ +-..+++.+...+ .|++..+|..|.
T Consensus 288 ~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~-----~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~ 362 (409)
T PF01603_consen 288 PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ-----NSRVILPIIFPALYRNSKNHWNQTVRNLAQ 362 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC-----THHHHHHHHHHHHSSTTSS-SSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4556667888888888999999988888876543 456666654 2345666655554 367778899999
Q ss_pred HHHHHHHhhChhhHhh
Q 005891 301 HWISTLLNRHRTEVLH 316 (671)
Q Consensus 301 ~WL~~L~~~~p~~i~~ 316 (671)
..+..+.+..|+-+..
T Consensus 363 ~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 363 NVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhCHHHHHH
Confidence 9999999887765543
No 330
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=45.65 E-value=2.1e+02 Score=25.20 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=53.2
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVK 101 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~---~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllK 101 (671)
..+...++..++.+.-|.+...|.+++..+..+.+.- ...+..-|.++++.+-.+.-|.......-|..+.+++.
T Consensus 31 ~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~ 108 (113)
T PF02847_consen 31 PSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIA 108 (113)
T ss_dssp GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHH
Confidence 3688889999999999999999999999888876531 12333446677777777777755556666666666554
No 331
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=44.02 E-value=3.3e+02 Score=26.97 Aligned_cols=127 Identities=17% Similarity=0.293 Sum_probs=68.0
Q ss_pred hhhHHHHHhccCCCCH------HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHH---HHH-HHH
Q 005891 31 QQIVPPVLNSFSDQDS------RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAH---LLD-RLV 100 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~------rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~---~Ld-rll 100 (671)
..|.|-++.|+.-++. ..|.......|++... .. .-|.++.+.+..+. .+++ +| |-. .|. .+.
T Consensus 2 ~eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~-~~---~~W~eL~d~Ils~~-~~e~-~k-A~~IF~~L~~~l~ 74 (174)
T PF04510_consen 2 REIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDL-QE---GGWDELSDCILSLS-ENEP-VK-AFHIFICLPMPLY 74 (174)
T ss_pred cchHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhc-CC---CCchhHHHHHHHhh-ccch-HH-HHHHHHhCCchhh
Confidence 4577888999976543 3455555555555421 11 23778888776655 3333 33 332 233 333
Q ss_pred HHhhcccchhhhhhhHHHHHHhhcCCC-HHHH-------HHHHHHHHHhhcCCchh-HHhchHHHHHHHHHhcCCCC
Q 005891 101 KDIVTESDQFSIEEFIPLLRERMNVLN-PYVR-------QFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSS 168 (671)
Q Consensus 101 KdIv~e~~~f~L~~fIP~L~e~i~~~n-p~vR-------~~alswL~~L~~ip~~~-li~~Lp~fL~gLf~lL~D~~ 168 (671)
++.+- .-++.+.|.+..++.++. .++. .+.+.||..+.+....+ +-..+|..++.+..+.+-..
T Consensus 75 ~efl~----~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~ 147 (174)
T PF04510_consen 75 GEFLI----PFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGM 147 (174)
T ss_pred hhHHH----HHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44332 236667777777776642 3444 22344666666555434 34456666665555554443
No 332
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=43.87 E-value=6.6e+02 Score=30.35 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=87.7
Q ss_pred cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh
Q 005891 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (671)
Q Consensus 233 pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~ 312 (671)
.+.|.+-..+...+..+++..-...-.+...+..+..-...+ ..+-++.-..+++..-..++...-+-|..+.+..|+
T Consensus 437 ~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~ 514 (727)
T PF12726_consen 437 RISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPS 514 (727)
T ss_pred hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 467888888888888777663333333322222211100000 011112222233322233555666677788888888
Q ss_pred hHhhhhh--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----------cchHHHHHHHHHhhcc---------ccch
Q 005891 313 EVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----------LQHFRQLVVFLVHNFR---------VDNS 370 (671)
Q Consensus 313 ~i~~~l~--~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~-----------~~~F~~fm~~LL~lf~---------~d~~ 370 (671)
.+...+. ...-.+..++-.+.+++...|..++..+.+. +.+|+.++.++..-+. .=.+
T Consensus 515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr 594 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPR 594 (727)
T ss_pred HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHH
Confidence 7776655 5677888899999999999999999998842 2345544444433221 1133
Q ss_pred hhhhHHHHHHHHHhccCCh
Q 005891 371 LLEKRGALIIRRLCVLLDA 389 (671)
Q Consensus 371 lLe~Rg~~IIR~Lc~~L~~ 389 (671)
.+.+ +..||+-||--.++
T Consensus 595 ~vr~-~~DIi~~Lcdp~~G 612 (727)
T PF12726_consen 595 MVRC-LMDIIEVLCDPVSG 612 (727)
T ss_pred HHHH-HHHHHHHHcCCCCC
Confidence 3333 46677777777666
No 333
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=43.71 E-value=2e+02 Score=26.89 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=56.5
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCCCC--HHHHHHHHHHHHHHh
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPS--DEVVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s--~eV~~~~l~lLa~Is 348 (671)
-...+..|.+.+.+.+..+.+.||.-|-.+...|+..+-..+ .+++..|.+.++++. +.|+.+.+.++..-+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999999999988774332 235666667777654 448889988876655
No 334
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=42.77 E-value=26 Score=34.07 Aligned_cols=94 Identities=13% Similarity=0.212 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhcCCchh-HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-HhhcCCCCChHHHHHHHHHhcC
Q 005891 129 YVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ-EIKNSPSVDYGRMAEILVQRAA 206 (671)
Q Consensus 129 ~vR~~alswL~~L~~ip~~~-li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~-~I~~~~~~d~~~iI~iLl~~~~ 206 (671)
..|..-++|+..|...-|.+ +...|..+... ..-.+.+.++-..+..|+..++. ..|...-.+.+..++.|..++.
T Consensus 91 ~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~--~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~ 168 (187)
T PF06371_consen 91 SLRTNPISWVQEFLELGGLEALLNVLSKLNKK--KEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLD 168 (187)
T ss_dssp HHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTH--HCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--
T ss_pred HhccCCchHHHHhccCCCHHHHHHHHHHhhhh--hhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHC
Confidence 45666678999887765543 33333333221 11224556677777777776653 1111111245778999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 005891 207 SPDEFTRLTAITWINEFV 224 (671)
Q Consensus 207 s~d~~irl~al~WI~~~~ 224 (671)
+++..+|..|++.+..+|
T Consensus 169 s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 169 SPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999887664
No 335
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=41.78 E-value=8.7e+02 Score=31.14 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc-CcCcc-cchHhHHHHHhhhhcCCc
Q 005891 173 QQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GDQLV-PYYADILGAILPCISDKE 250 (671)
Q Consensus 173 ~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~-~~~l~-pflp~LLp~LL~~Lsd~~ 250 (671)
..+..+|..+++. + .++++..+.+|.+.++.+..-.. ..++++. ..+.. --..+++...|-.+++++
T Consensus 488 ~lgr~AL~nLL~~-------N-~dLl~~~IdrCYss~~~va~gYF---~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~ 556 (1120)
T PF14228_consen 488 SLGRRALKNLLEH-------N-PDLLDWVIDRCYSSSPRVAEGYF---TVLAEVFSEREYPPCPFWELLNLVLFKLGDES 556 (1120)
T ss_pred HHHHHHHHHHHHh-------h-HHHHHHHHHHhcCCChhHHHHHH---HHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCc
Confidence 4456667777751 1 34889999999998866543333 3344443 11211 135699999999999999
Q ss_pred HhHHHHHHHHHHHH
Q 005891 251 EKIRVVARETNEEL 264 (671)
Q Consensus 251 ~eIR~~A~~~n~~L 264 (671)
.+||..|.+....+
T Consensus 557 ~eIR~~A~qLL~~L 570 (1120)
T PF14228_consen 557 SEIRSKAMQLLRAL 570 (1120)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998765544
No 336
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=41.27 E-value=3.1e+02 Score=31.53 Aligned_cols=74 Identities=22% Similarity=0.420 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcC-CCChHHHH
Q 005891 95 LLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQ 173 (671)
Q Consensus 95 ~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~-D~~~eVR~ 173 (671)
.+++++|-| ..+.++.+|...+...++..+..++.|+.. ...+|.+++ .|+ +.+.++..
T Consensus 22 ~v~~llkHI-------~~~~ImDlLLklIs~d~~~~~~~ilewL~~---------q~LI~~Li~----~L~p~~~~~~q~ 81 (475)
T PF04499_consen 22 FVDNLLKHI-------DTPAIMDLLLKLISTDKPESPTGILEWLAE---------QNLIPRLID----LLSPSYSSDVQS 81 (475)
T ss_pred HHHHHHHhc-------CCcHHHHHHHHHHccCcccchHHHHHHHHH---------hCHHHHHHH----HhCCCCCHHHHH
Confidence 455666633 357788888888888889999999999976 223334444 554 44567777
Q ss_pred HHHHHHHHHHHHhhc
Q 005891 174 QADSALWEFLQEIKN 188 (671)
Q Consensus 174 ~a~~~L~~ll~~I~~ 188 (671)
.|+..|.+++..-.+
T Consensus 82 naa~~L~aII~is~n 96 (475)
T PF04499_consen 82 NAADFLKAIIRISRN 96 (475)
T ss_pred HHHHHHHHHHHHhhc
Confidence 777777777765443
No 337
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=40.47 E-value=76 Score=30.56 Aligned_cols=133 Identities=16% Similarity=0.128 Sum_probs=82.2
Q ss_pred HHhhhhcC--CcHhHHHHHHHHHHHHHHhcCCCCCCCChH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh
Q 005891 241 AILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVG-PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 317 (671)
Q Consensus 241 ~LL~~Lsd--~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~-~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~ 317 (671)
.++..+.. ..+++|..|.-+...+++..++ ++. .+-+.+...+.+......+.+...+.+++.+.|+-..+.
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~-----~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDAARE-----EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444443 4578999888877777655432 233 333345555555555588899999999999988765442
Q ss_pred --hhHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHhhccccchhhhhHHHHH
Q 005891 318 --LNDIFDTLLKALS--DPSDEVVLLVLEVHACIAKD-------LQHFRQLVVFLVHNFRVDNSLLEKRGALI 379 (671)
Q Consensus 318 --l~~l~p~LL~~Ls--D~s~eV~~~~l~lLa~Is~~-------~~~F~~fm~~LL~lf~~d~~lLe~Rg~~I 379 (671)
.+++.+.+++... .++..+...++++++.-|.+ .+++.++++.+.+.-+++. ..+.|+.++
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~-~ir~~A~v~ 153 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDS-EIRVLAAVG 153 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH--CHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchH-HHHHHHHHH
Confidence 4578888888887 56667777888999888843 2445555555544333222 134554444
No 338
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=40.31 E-value=36 Score=33.74 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH
Q 005891 125 VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (671)
Q Consensus 125 ~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf 161 (671)
..+|.||++++.|+.. .++.++.-|+|.+++.|-
T Consensus 82 ~~~~~Vr~yAvr~L~~---~~~e~l~~YlpQLVQaLr 115 (175)
T cd00871 82 PGHPLVLQYAVRVLES---YPVETVFFYIPQIVQALR 115 (175)
T ss_pred CCCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHh
Confidence 3689999999999865 678889999999998664
No 339
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=40.09 E-value=35 Score=33.97 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCchH-HHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 005891 71 FNQIFDALCKLSADSDAN-VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (671)
Q Consensus 71 f~eIf~~L~kL~~D~d~~-Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~l 149 (671)
.++.++.+...+.-.++. |+.+-..|.. -. ..+...-+.+|...+ .++.||.+|+.++ .+.++.++
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~----W~----~~~p~~AL~LL~~~f--~~~~VR~yAv~~L---~~~~d~~l 109 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQ----WP----PISPEDALELLSPNF--PDPFVRQYAVRRL---ESLSDEEL 109 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHT----SH----CTTHHHHHHCTSTT-----HHHHHHHHHHH---CTS-HHHH
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHc----CC----CCCHHHHHHHHHhhc--cHHHHHHHHHHHH---HHcCchHH
Confidence 345566666666555543 4433333222 11 122333344444333 3599999999998 45788899
Q ss_pred HhchHHHHHHHH
Q 005891 150 LGFLPDFLDGLF 161 (671)
Q Consensus 150 i~~Lp~fL~gLf 161 (671)
..|+|.+++.|-
T Consensus 110 ~~yLpQLVQaLr 121 (184)
T PF00613_consen 110 LFYLPQLVQALR 121 (184)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHhe
Confidence 999999999663
No 340
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=39.65 E-value=2.6e+02 Score=26.84 Aligned_cols=131 Identities=16% Similarity=0.068 Sum_probs=76.2
Q ss_pred CCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH--hchHHHHHHH
Q 005891 84 DSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML--GFLPDFLDGL 160 (671)
Q Consensus 84 D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li--~~Lp~fL~gL 160 (671)
...++||..| -.+.+++ |.-. +..-+.+-..+..++.....+-..-+++.+..+-.+++.-.. -.-+.+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~---~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAR---EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhH---HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 4567889888 6677775 3333 223566666777777665555666677777777766653322 1234556666
Q ss_pred HHhcC--CCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC-CCCHH-HHHHHHHH
Q 005891 161 FNMLS--DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEF-TRLTAITW 219 (671)
Q Consensus 161 f~lL~--D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~-s~d~~-irl~al~W 219 (671)
..++. ..+..+..++.++|..-+-.=.. ...-..+-+++|-+... ++++. +|..|+.-
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc~d~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAACIDKSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHTTSHHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHccHHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 66776 56777777777776665521000 01124666777777773 44555 67665543
No 341
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=39.43 E-value=2.7e+02 Score=26.79 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHhhc-CCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005891 126 LNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 126 ~np~vR~~alswL~~L~~-ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll 183 (671)
.+...-..++.++..+.+ -.|.+.+-.-|..+..+...+..++..+|..|.+.|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 455666778888887654 4566666668888999999999999999999999888765
No 342
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=39.41 E-value=7.3e+02 Score=29.59 Aligned_cols=189 Identities=19% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhHhhhhhHHHHHHHHhcCCCC-HHHHHHHHHHHHHHh----hccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhcc
Q 005891 312 TEVLHFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (671)
Q Consensus 312 ~~i~~~l~~l~p~LL~~LsD~s-~eV~~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~ 386 (671)
..+-+-....+..++..+++-. .+|..-++..+...+ .-....++++......-++..--+.--+-++++.+|..
T Consensus 233 ~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~ 312 (661)
T KOG2256|consen 233 YKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRK 312 (661)
T ss_pred hhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHH
Q ss_pred CChHHHHHHHHHhhcc---------cCChhHHHHHHHHHHHHhccchhH-------------HHHHHHHHhccCCcchHH
Q 005891 387 LDAERVYRELSTILEG---------EADLDFACTMVQALNLILLTSSEL-------------SELRDLLKKSLVNPAGKD 444 (671)
Q Consensus 387 L~~E~Iy~~la~iL~~---------~~dl~F~~~mVq~Ln~iLLTs~El-------------~~lR~~L~~~l~~~~~~~ 444 (671)
.++.-+...|=..... -+++++.+-|=..|-.++...++. ..||+.+.. .++++..
T Consensus 313 ~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~--k~K~s~~ 390 (661)
T KOG2256|consen 313 FKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMIT--KNKESVQ 390 (661)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhc--CCHHHHH
Q ss_pred HHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHhhccccchHHHHHHHHHH-HHhhchhhHHHHHhhc
Q 005891 445 LFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLI-RLLETPIFAYLRLQLL 513 (671)
Q Consensus 445 lF~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~~~~e~~~~~l~q~d~Lv-qllEspif~~lRl~Ll 513 (671)
.-..|-| .-||=||++.--.|+..-..+.++ +--|+|+=.-| +|+.+|-|.-||++++
T Consensus 391 ----~VYnWqf----i~cL~lW~rvisf~~~~~s~lq~L---vYpLvQvi~GvirLipT~qy~PLRlhci 449 (661)
T KOG2256|consen 391 ----SVYNWQY----VHCLDLWLRVISFANGSASQLQPL---VYPLVQVILGVIRLIPTPQYYPLRLHCI 449 (661)
T ss_pred ----HHHHHHH----HHHHHHHHHHHHHhhccHhhhhhh---hhHHHHHHHHHhhhcCcccchhHHHHHH
No 343
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.38 E-value=6.9e+02 Score=29.25 Aligned_cols=143 Identities=11% Similarity=0.076 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhh
Q 005891 169 HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA--ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 246 (671)
Q Consensus 169 ~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~--~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~L 246 (671)
.+-|..+...+.+..-.||. +.-+..+.... ..+.|+.-..+++-+..+++-.+..=-+-+|+++..+...
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs------~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl- 438 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGS------DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL- 438 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCc------HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC-
Confidence 35666666666666666653 22222222222 3456888888899888777654433333456666665532
Q ss_pred cCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHH
Q 005891 247 SDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 323 (671)
Q Consensus 247 sd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p 323 (671)
.-..+ +|.++....+.+-+.+...++ -++.+++.+...+.... ---++-.|+..+..+|...+..+.+++..
T Consensus 439 p~Q~~-~~~ts~ll~g~~~ew~~~~p~--~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~ 510 (559)
T KOG2081|consen 439 PEQAP-LRYTSILLLGEYSEWVEQHPE--LLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLE 510 (559)
T ss_pred ccchh-HHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 22233 899998888888777764222 24566666666665433 34555689999999999999887776554
No 344
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=39.36 E-value=1.3e+02 Score=27.51 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCC--c-------HhHHHHHHH
Q 005891 192 VDYGRMAEILVQRA---ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--E-------EKIRVVARE 259 (671)
Q Consensus 192 ~d~~~iI~iLl~~~---~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~--~-------~eIR~~A~~ 259 (671)
.++..|+.++..++ ..++|.+...|+.-|.-++.-++..++..+..-...|-.+.... + ..||+.|.+
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 45889999999998 66789999999999999999999888777766666655554431 1 258888887
Q ss_pred HHHHH
Q 005891 260 TNEEL 264 (671)
Q Consensus 260 ~n~~L 264 (671)
+...|
T Consensus 115 i~~lL 119 (125)
T PF01417_consen 115 ILELL 119 (125)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76544
No 345
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=38.74 E-value=39 Score=33.28 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH
Q 005891 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (671)
Q Consensus 126 ~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf 161 (671)
.++.||++|+.|+.. .++.++..|+|.+++.|-
T Consensus 83 ~d~~VR~yAV~~L~~---~~ddeL~~yLpQLVQaLk 115 (169)
T cd00869 83 PDQEVRAHAVQWLAR---LSNDELLDYLPQLVQALK 115 (169)
T ss_pred CChHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 457899999999865 578889999999999764
No 346
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=38.69 E-value=4.6e+02 Score=27.03 Aligned_cols=178 Identities=15% Similarity=0.185 Sum_probs=103.9
Q ss_pred hcCCcHhHHHHHHHHHHHHHHh----cCCC---CCCCC-hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh-----
Q 005891 246 ISDKEEKIRVVARETNEELRAI----KADP---ADGFD-VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT----- 312 (671)
Q Consensus 246 Lsd~~~eIR~~A~~~n~~L~~~----i~~~---~~~~d-l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~----- 312 (671)
+.|+++.+.+.+..+...+... +... .+.|+ +..+-+.+...+.+.++.+|++|++.+..+......
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4567777777777666655443 3110 01132 245555677778888999999999998877655311
Q ss_pred -------------------------hHhhhhhHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhh-ccchHHHHHHHHHhh
Q 005891 313 -------------------------EVLHFLNDIFDTLLKALSDPS--DEVVLLVLEVHACIAK-DLQHFRQLVVFLVHN 364 (671)
Q Consensus 313 -------------------------~i~~~l~~l~p~LL~~LsD~s--~eV~~~~l~lLa~Is~-~~~~F~~fm~~LL~l 364 (671)
.+..--.+++..|+..+.++. +.+...++..|+-|.. ...|...++..|+..
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSF 161 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 122234468999999998876 6667777888888885 456666777777775
Q ss_pred cccc----chhhhhHHHHHHHHHhccCChHHHHHHHHHhhcc-cCChhHHHHHHHHHHHHhccchhHHHHHHH
Q 005891 365 FRVD----NSLLEKRGALIIRRLCVLLDAERVYRELSTILEG-EADLDFACTMVQALNLILLTSSELSELRDL 432 (671)
Q Consensus 365 f~~d----~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~-~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~ 432 (671)
-.+. ...+. ...+|-. |+-+|.+---+.+ ..-.+|...+.+.|+-+=-+..|..+.-.+
T Consensus 162 ~~~~~~~~~~~~~---~~~v~sv------~k~lk~~l~~llk~~~~~~~~~~i~~~L~~lg~~~~e~~~~~~~ 225 (239)
T PF11935_consen 162 NPNLSPMQPPTLS---KLQVKSV------EKTLKIFLLHLLKHPASSPFQGRITQALTDLGASQREIADEAKR 225 (239)
T ss_dssp HHS------TTCS---HHHHHHH------HHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTT--HHHHHHT---
T ss_pred CccccccCCccch---HHHHHHH------HHHHHHHHHHHHCCCCchhhHHHHHHHHHHHccCHHHHHHHhhh
Confidence 5433 11111 1111111 4444443333333 333499999999999777777776665443
No 347
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=38.36 E-value=2.5e+02 Score=28.86 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHh-----hccc--chhhhhhhHHHHHHhhc--CCCHHHHHHHHHHHHH
Q 005891 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-----VTES--DQFSIEEFIPLLRERMN--VLNPYVRQFLVGWITV 140 (671)
Q Consensus 70 ~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdI-----v~e~--~~f~L~~fIP~L~e~i~--~~np~vR~~alswL~~ 140 (671)
.-..||.+||+.+.-.....|.-|+.+...++.. .... ....-+.-+--....+. ...-+.|.++|+....
T Consensus 67 ~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia~~~~f~YSRl~AIGL~~L 146 (216)
T PF11264_consen 67 DKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQAIASNPKFKYSRLFAIGLFRL 146 (216)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3568999999988766667888886655554421 1100 00111222222333342 2445889999999998
Q ss_pred hhcCCchhH--HhchHHHHHHHHHhcCCCChHHHH
Q 005891 141 LDSVPDIDM--LGFLPDFLDGLFNMLSDSSHEIRQ 173 (671)
Q Consensus 141 L~~ip~~~l--i~~Lp~fL~gLf~lL~D~~~eVR~ 173 (671)
+....+... -...|..+..|...|+=+..-|.+
T Consensus 147 Le~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~k 181 (216)
T PF11264_consen 147 LELAGADLVKDEEKRPEALEKLSEALGLSKEKVEK 181 (216)
T ss_pred HHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHh
Confidence 877665222 246777777777777766655553
No 348
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.34 E-value=2.9e+02 Score=32.37 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=27.4
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHH
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~ 322 (671)
.+++...|...+...+...-..++..+.....+........++.++
T Consensus 180 ~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 180 QADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455555555544444444566777777777777666666666544
No 349
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=37.45 E-value=5.3e+02 Score=31.02 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=89.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchH
Q 005891 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (671)
Q Consensus 157 L~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp 236 (671)
+..||.++.-++..|...+...+.+.+..-+ -+-++..|+++.-+.+....+. .++.+. -|+-.
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~y~~~t~s~~~~~------il~~~~----~P~~K 69 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDR------EPWLVNGLVDYYLSTNSQRALE------ILVGVQ----EPHDK 69 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccc------hHHHHHHHHHHHhhcCcHHHHH------HHHhcC----CccHH
Confidence 3456667777777777776666655554221 1245566665543333222111 122221 24445
Q ss_pred hHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHh
Q 005891 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVL 315 (671)
Q Consensus 237 ~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~-~~~~~tRiaaL~WL~~L~~~~p~~i~ 315 (671)
.++..+-.++... +-|..|......+.+.-...--.+--.+++..|...+. +.+..+-.+|+.-|.+|.-..|..+.
T Consensus 70 ~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 70 HLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhh
Confidence 5566666666654 45555554444443321100000001255555555554 55677889999999999999999999
Q ss_pred hhhhHHHHHHHHhcC
Q 005891 316 HFLNDIFDTLLKALS 330 (671)
Q Consensus 316 ~~l~~l~p~LL~~Ls 330 (671)
+|++.+|......++
T Consensus 148 ~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 148 PHLPDLFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888773
No 350
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=37.28 E-value=1.1e+03 Score=31.18 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hccchHHH--HHHHHHhhccccchhhhhHHHHHHHHHhccCCh
Q 005891 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (671)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~~l~lLa~Is----~~~~~F~~--fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (671)
..+..||.-|+..+=-||.++|-+|-.++ ++++++-+ -+.-|..++++.++....-..--+|+|-..-++
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 46788889999999999999998888877 34556544 233344455555444333333477887766644
No 351
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=35.63 E-value=7.1e+02 Score=28.30 Aligned_cols=271 Identities=14% Similarity=0.108 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH-HHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHh
Q 005891 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDA-LCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRER 122 (671)
Q Consensus 45 d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~-L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~ 122 (671)
--+-|-+|+.+|..+......+. .++++.. |..+++++...-|-.| -.+....+..-........+.|.+.|.+.
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~---~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESS---LQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 37889999999988876543332 3456664 6677787777666666 33444444222211111146788888887
Q ss_pred hcCCC-----------HHHHHHHHHHHHHhhcCCc--hh------------------------HHhchHHHHHHHHHhcC
Q 005891 123 MNVLN-----------PYVRQFLVGWITVLDSVPD--ID------------------------MLGFLPDFLDGLFNMLS 165 (671)
Q Consensus 123 i~~~n-----------p~vR~~alswL~~L~~ip~--~~------------------------li~~Lp~fL~gLf~lL~ 165 (671)
+.++. ..+|.-+-+.+..+...-- .+ ........++.+.+.++
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 77332 2455555555555532111 01 11233334555555554
Q ss_pred CCC--------hHHHHHHHHHHHHHHHHhhcC----------------CC-CChHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 005891 166 DSS--------HEIRQQADSALWEFLQEIKNS----------------PS-VDYGRMAEILVQRAASP-DEFTRLTAITW 219 (671)
Q Consensus 166 D~~--------~eVR~~a~~~L~~ll~~I~~~----------------~~-~d~~~iI~iLl~~~~s~-d~~irl~al~W 219 (671)
-.. .+-|......++.+-..-... .- .-+..+|.-|.+.+... ++..|..+..+
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~s 336 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAES 336 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHH
Confidence 332 122333333333332221110 00 12567888888877664 56788889999
Q ss_pred HHHHHhhcCcCcccchHhHHHHHhhhhc-CC--cHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHH
Q 005891 220 INEFVKLGGDQLVPYYADILGAILPCIS-DK--EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATR 296 (671)
Q Consensus 220 I~~~~~l~~~~l~pflp~LLp~LL~~Ls-d~--~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tR 296 (671)
|..+++.+-..--.=-+||+.-+...+. |. .|++-....... .++.+..+.. ..+ .....-.+.-....-..|
T Consensus 337 lA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~-gILsl~k~~~-~~~--~~~~~~~~~~~~~a~I~R 412 (441)
T PF12054_consen 337 LARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKD-GILSLRKEED-KAD--HADAASEEREQKEARIQR 412 (441)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhh-cccchhhhcc-ccc--ccccccchhhhhhhHHHh
Confidence 9998887542222225788888888775 32 244331111100 0111111100 000 000000011111223468
Q ss_pred HHHHHHHHHHHhhChhhHhhhhhHHH
Q 005891 297 IEALHWISTLLNRHRTEVLHFLNDIF 322 (671)
Q Consensus 297 iaaL~WL~~L~~~~p~~i~~~l~~l~ 322 (671)
-.|...|..|...++.+++.-++.+.
T Consensus 413 rGA~~aL~~l~~~FG~~Lf~~lP~Lw 438 (441)
T PF12054_consen 413 RGAELALEQLAKRFGSSLFEKLPKLW 438 (441)
T ss_pred cCHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 88889999999999999887666554
No 352
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=35.42 E-value=3.3e+02 Score=25.94 Aligned_cols=88 Identities=22% Similarity=0.287 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CC
Q 005891 68 IIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS--VP 145 (671)
Q Consensus 68 l~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~--ip 145 (671)
+...+++.+.+..++++++++|+..| |++++. -.. ..+...-..|...+. +...|.-+..|...-.+ +.
T Consensus 12 l~~~~~l~~~~~~LL~~~d~~vQklA--L~cll~----~k~-~~l~pY~d~L~~Lld--d~~frdeL~~f~~~~~~~~I~ 82 (141)
T PF07539_consen 12 LYRSDELYDALLRLLSSRDPEVQKLA--LDCLLT----WKD-PYLTPYKDNLENLLD--DKTFRDELTTFNLSDESSVIE 82 (141)
T ss_pred HhhHHHHHHHHHHHHcCCCHHHHHHH--HHHHHH----hCc-HHHHhHHHHHHHHcC--cchHHHHHHhhcccCCcCCCC
Confidence 34457888889999999999999988 555433 111 123333444555544 34667766666643332 45
Q ss_pred chhHHhchHHHHHHHHHhc
Q 005891 146 DIDMLGFLPDFLDGLFNML 164 (671)
Q Consensus 146 ~~~li~~Lp~fL~gLf~lL 164 (671)
+.+=-..+|-++.-|+.-+
T Consensus 83 ~ehR~~l~pvvlRILygk~ 101 (141)
T PF07539_consen 83 EEHRPELMPVVLRILYGKM 101 (141)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 5555667788888777433
No 353
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=35.14 E-value=2.1e+02 Score=29.36 Aligned_cols=144 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCCh--HHHHH
Q 005891 97 DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH--EIRQQ 174 (671)
Q Consensus 97 drllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~--eVR~~ 174 (671)
++..+ .+.+.+..-..+++-.+.+. .+.+..+-..+++++.........-.-.-+++||.++...-.+.+. ++-..
T Consensus 63 ~~~~~-~l~dI~kvly~r~i~~~~~~-~d~~~~~s~LclEcf~~~~~~v~~~y~~k~~~FL~~i~~~~~~~~~~~d~~~~ 140 (219)
T PF14677_consen 63 KRTFK-HLCDITKVLYWRCISRLSEV-EDFDKQVSLLCLECFLEILSTVCQRYPDKFSQFLSAIDMTDDNAEEEKDLTER 140 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHTSGGGHHHHHHHTS----STTTT-HHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHhcchhh-cCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCccccccHHHH
Q ss_pred HHHHHHHHHHHh-----hcCCCCC------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHh
Q 005891 175 ADSALWEFLQEI-----KNSPSVD------YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 243 (671)
Q Consensus 175 a~~~L~~ll~~I-----~~~~~~d------~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL 243 (671)
....++.|.+++ ...-... +=.++..+..++.-.++..- .++.|+..|++-..-+-..+.+.++..++
T Consensus 141 i~~~I~~f~r~~~~~~s~~~e~~~~K~~~~Lv~ils~L~~~l~~~s~~~~-q~~~W~~~~ck~~~l~d~~~~k~ll~lLf 219 (219)
T PF14677_consen 141 IQFQIRQFQRELENFLSSEEEDFNSKEAVLLVNILSQLSDHLDPSSDQFT-QMLSWTLKFCKENSLEDSSFCKGLLSLLF 219 (219)
T ss_dssp HHHHHHHHHHHHHHHHHS--SS--SHHHHHHHHHHHHHTTSS-SSSSHHH-HHHHHHHHHHHS---S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHhC
No 354
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.79 E-value=4.2e+02 Score=25.39 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=38.5
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh-cCCCC--HHHHHHHHHHHHHHHhh
Q 005891 159 GLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQR-AASPD--EFTRLTAITWINEFVKL 226 (671)
Q Consensus 159 gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~-~~s~d--~~irl~al~WI~~~~~l 226 (671)
.|.+.+..+++.|=..+...+..+....+..-...++-+++.++.. +.++. ...|..+++.+..+++.
T Consensus 77 ~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 77 ALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 3344443344666656666666665555432223456666666663 33333 45777788888887763
No 355
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=34.33 E-value=2.1e+02 Score=36.31 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 208 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 208 ~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
+|.+||..|.+||. .+..+.++.|+|+++.++---+--..+-+|-.-.++.
T Consensus 902 PDqeVR~~AVqwi~---~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl 952 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIA---RLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSL 952 (1639)
T ss_pred CcHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 47899999999996 4567788889999988776544444455554444443
No 356
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=33.72 E-value=7.3e+02 Score=27.92 Aligned_cols=242 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHhcch----------hhhhH-------HHHHHHHHHhhcCCchHHHHHH-HHHHH
Q 005891 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGD----------FIIFF-------NQIFDALCKLSADSDANVQSAA-HLLDR 98 (671)
Q Consensus 37 vL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~----------il~~f-------~eIf~~L~kL~~D~d~~Vr~gA-~~Ldr 98 (671)
+|+.-+|+...|-.|-. |.|.+++. |-.|| .+-||+-..+..|.|-.||.-| ..|..
T Consensus 13 ~l~~a~dk~q~v~~y~~-----il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~ 87 (460)
T KOG2213|consen 13 ILSEATDKSQHVDDYEG-----ILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPL 87 (460)
T ss_pred HHHhhchhhhhHHHHHH-----HHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccch
Q ss_pred HHHHhhcccchhhhhhhHHHHHHhhc------------CCCHHHHHHHHHHHH-HhhcCCchhHHhchHHH-HHHHHHhc
Q 005891 99 LVKDIVTESDQFSIEEFIPLLRERMN------------VLNPYVRQFLVGWIT-VLDSVPDIDMLGFLPDF-LDGLFNML 164 (671)
Q Consensus 99 llKdIv~e~~~f~L~~fIP~L~e~i~------------~~np~vR~~alswL~-~L~~ip~~~li~~Lp~f-L~gLf~lL 164 (671)
+|++ -.+..+.|.|.+++. +.+..+|.-++..|. .+..+++.-+-.-+... ++.+++.|
T Consensus 88 fc~~-------d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal 160 (460)
T KOG2213|consen 88 FCKG-------DALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKAL 160 (460)
T ss_pred hccC-------chhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHH
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhh
Q 005891 165 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (671)
Q Consensus 165 ~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~ 244 (671)
.|...|-=.+....|..+-..-+..+.-++.+++.+.-...+- +.+-+-=++.+.-+++
T Consensus 161 ~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~l---------------------daf~~sD~d~VdRfis 219 (460)
T KOG2213|consen 161 EDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADL---------------------DAFNVSDADYVDRFIS 219 (460)
T ss_pred HhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhcc---------------------CcccCCChHHHHHHHH
Q ss_pred hhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHH
Q 005891 245 CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (671)
Q Consensus 245 ~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~ 322 (671)
|+.-..|-....|-.. ..+..+.++.- +-...+-..-|+.|..|++..+..-.+-..+++
T Consensus 220 Cl~~AvPfFargapSs------------------kf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~L 281 (460)
T KOG2213|consen 220 CLLMAVPFFARGAPSS------------------KFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQML 281 (460)
T ss_pred HHHHhhhhhhcCCchh------------------HHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHH
Q ss_pred HHHHHhc
Q 005891 323 DTLLKAL 329 (671)
Q Consensus 323 p~LL~~L 329 (671)
|.++..|
T Consensus 282 psi~elL 288 (460)
T KOG2213|consen 282 PSIVELL 288 (460)
T ss_pred HHHHHHH
No 357
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.34 E-value=1.3e+03 Score=30.64 Aligned_cols=71 Identities=18% Similarity=0.034 Sum_probs=54.5
Q ss_pred hHhHHHHHHH-hcCCCcHHHHHHHHHHHHHHH--hhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 277 VGPILSIATR-QLSSEWEATRIEALHWISTLL--NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~-~L~~~~~~tRiaaL~WL~~L~--~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
..+++..+.. ...+.+|..|.+++..+.... +..+ .-..+-+++.-.+.+.++|..-+||..+..+|+-+-
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~ 1597 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLL 1597 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 4677777774 445678999999999887543 3343 233567789999999999998899999999998876
No 358
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=33.15 E-value=76 Score=31.63 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHH
Q 005891 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (671)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~L 242 (671)
.++....++.+-.... |+.||..|+.|+. +...+++.-|+|+++.++
T Consensus 73 ~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~---~~~d~~l~~yLpQLVQaL 119 (184)
T smart00145 73 PLDPEDALELLSPKFP--DPFVRAYAVERLE---SASDEELLLYLLQLVQAL 119 (184)
T ss_pred CCCHHHHHHHhCccCC--CHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHH
Confidence 3667777777765554 7899999999985 466677888888888876
No 359
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=33.10 E-value=1e+03 Score=29.51 Aligned_cols=175 Identities=17% Similarity=0.137 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc-
Q 005891 170 EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS- 247 (671)
Q Consensus 170 eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~-~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls- 247 (671)
.+|.+....+++..-.-. ++-.-.++++-.++....+++. +.|...++.|..++...++...|..+.+++.+.....
T Consensus 508 T~~~a~~t~~~~~n~~~~-~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~ 586 (947)
T COG5657 508 TTREAYSTIFDDWNFSVC-SKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEI 586 (947)
T ss_pred HHHHHHHHHHHhcccccc-cccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHH
Confidence 345555444444432111 1122367888888888888754 5677788899999999999988888888887766443
Q ss_pred -CCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHH
Q 005891 248 -DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTL 325 (671)
Q Consensus 248 -d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~-~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~L 325 (671)
-.+|..+..++..-......+.....- .+..++.+..-+.-+ ....-+.+.+.+..+......-...+....+|.+
T Consensus 587 ~~knps~p~~~h~~fe~I~al~~~~~~~--~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v 664 (947)
T COG5657 587 NAKNPSNPQFAHYTFEDIGALVFLKSGM--CEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSV 664 (947)
T ss_pred HccCCccHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchH
Confidence 345665555444333333222211111 123344444444322 1222344444444433333222222333345666
Q ss_pred HHhcCCCC--HHHHHHHHHHHHHH
Q 005891 326 LKALSDPS--DEVVLLVLEVHACI 347 (671)
Q Consensus 326 L~~LsD~s--~eV~~~~l~lLa~I 347 (671)
++-+.-++ +++-......++-+
T Consensus 665 ~~~l~q~~~~t~ll~~~~~I~~~~ 688 (947)
T COG5657 665 VKILRQPSLATELLPTKLEILKSY 688 (947)
T ss_pred HHHHhcccCchHHHHHHHHHHHHH
Confidence 66555532 44444444444333
No 360
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=32.91 E-value=7.7e+02 Score=27.90 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=50.5
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHH-HHHH-HHhhChhhHhhhhhHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhh-ccchH
Q 005891 279 PILSIATRQLSSEWEATRIEALH-WIST-LLNRHRTEVLHFLNDIFDTLLKALSD-PSDEVVLLVLEVHACIAK-DLQHF 354 (671)
Q Consensus 279 ~il~~L~~~L~~~~~~tRiaaL~-WL~~-L~~~~p~~i~~~l~~l~p~LL~~LsD-~s~eV~~~~l~lLa~Is~-~~~~F 354 (671)
++...+...+.+++.++-+.||. |=.. +.....+...-.++-+||+|-+.-+. =...|...++.++.-+.+ |...|
T Consensus 341 PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LF 420 (457)
T KOG2085|consen 341 PLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLF 420 (457)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 44445667778888888777774 3221 11112222223456677777765432 246788888888888885 55666
Q ss_pred HHHHHHHHhhcccc
Q 005891 355 RQLVVFLVHNFRVD 368 (671)
Q Consensus 355 ~~fm~~LL~lf~~d 368 (671)
+. +++.|+.+
T Consensus 421 ee----c~~~y~~~ 430 (457)
T KOG2085|consen 421 EE----CLALYKED 430 (457)
T ss_pred HH----HHHHHHHH
Confidence 55 44445433
No 361
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=32.71 E-value=3.3e+02 Score=33.32 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=21.6
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhh
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~ 319 (671)
.+++++.|...+..++...-..++..|....++...+.+..++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3556666655554433333344555555555555555444433
No 362
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=32.39 E-value=87 Score=38.01 Aligned_cols=138 Identities=11% Similarity=0.149 Sum_probs=94.2
Q ss_pred ChHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 193 DYGRMAEILVQRAASP----DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 193 d~~~iI~iLl~~~~s~----d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
.+++|-.+|.+++... ..-.-.-|++.++.++..+.+.+-.|...+|-.+.+.+....++.+-+++.+...+...-
T Consensus 49 KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~ 128 (819)
T KOG1877|consen 49 KLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIE 128 (819)
T ss_pred hhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhc
Confidence 3677777887777542 111123467788888888888888899999999999999999999999998888887776
Q ss_pred CCC-CCCCChHhHHHHHHHhcCC---Cc--HHHHHHHHHHHHHHHhhC-----hhhH--hhhhhHHHHHHHHhcC
Q 005891 269 ADP-ADGFDVGPILSIATRQLSS---EW--EATRIEALHWISTLLNRH-----RTEV--LHFLNDIFDTLLKALS 330 (671)
Q Consensus 269 ~~~-~~~~dl~~il~~L~~~L~~---~~--~~tRiaaL~WL~~L~~~~-----p~~i--~~~l~~l~p~LL~~Ls 330 (671)
++. .....|+.+++...+...+ +. -..|.+.++.|..++... ...+ ..|.+.+||.++..++
T Consensus 129 ~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~ 203 (819)
T KOG1877|consen 129 EDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQ 203 (819)
T ss_pred ccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhc
Confidence 653 2235677788766555443 11 224777666555554443 2222 2368889999886654
No 363
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=32.04 E-value=5.2e+02 Score=25.66 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH-hhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005891 297 IEALHWISTLL-NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (671)
Q Consensus 297 iaaL~WL~~L~-~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~ 346 (671)
+.|..-+..|. ....+-+.++++.++|...+.|.+|.+ ....+|+|+-
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~--~d~~~W~LAl 108 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEE--VDVEDWVLAL 108 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchh--ccHHHHHHHH
Confidence 44555555555 556677889999999999999999875 4455666544
No 364
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=32.00 E-value=3e+02 Score=33.98 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=23.3
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHH
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~ 322 (671)
+.+...|.+.+..++...--.++.++.....+........+++++
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444455555444333323334556666666666655555555544
No 365
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=31.88 E-value=5.1e+02 Score=25.58 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=76.9
Q ss_pred hHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHhh
Q 005891 235 YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW-----EATRIEALHWISTLLNR 309 (671)
Q Consensus 235 lp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~-----~~tRiaaL~WL~~L~~~ 309 (671)
..+++..+++..+..-+.+|..|.++...++..-...-..++. .+.|...+..++ |..=..+..-+..|...
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~---~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~ 81 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPH---REELQDIFPSESEASLNWSSSSEYFPRLVKLLDL 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCc---HHHHHHHcccccccccccCCHHHHHHHHHHHhcc
Confidence 5678888888888888999999999988877322110011111 122333332211 22111122212222221
Q ss_pred ChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHhhccccch
Q 005891 310 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNS 370 (671)
Q Consensus 310 ~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~ 370 (671)
-.|...++.-+.-+...-++.++..+-..|-.+. .+...+..++..|++.|+++.+
T Consensus 82 -----~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~ 141 (193)
T PF12612_consen 82 -----PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLR 141 (193)
T ss_pred -----HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCC
Confidence 1456667777777778888888887777776665 4667788899999998876644
No 366
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.77 E-value=5.1e+02 Score=28.63 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005891 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 126 ~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll 183 (671)
....|...++..|.++..-....--..+..=.+.|.++..-.+++++.++..+|.++-
T Consensus 386 ~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 386 VAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 3457888999999998877665555666667888888888899999999887777664
No 367
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=31.58 E-value=4.7e+02 Score=30.08 Aligned_cols=109 Identities=7% Similarity=0.220 Sum_probs=64.8
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhcCC
Q 005891 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
++.+.|+..++..+...++..+...++|+.+ .++++.++..++ ..++++...|.+....+.+....
T Consensus 30 I~~~~ImDlLLklIs~d~~~~~~~ilewL~~-------------q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 30 IDTPAIMDLLLKLISTDKPESPTGILEWLAE-------------QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred cCCcHHHHHHHHHHccCcccchHHHHHHHHH-------------hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 4668888888888887777788888999964 334444555554 44566777777777776665442
Q ss_pred CCC----CC--C-------hHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhh
Q 005891 271 PAD----GF--D-------VGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTE 313 (671)
Q Consensus 271 ~~~----~~--d-------l~~il~~L~~~L~~-~~~~tRiaaL~WL~~L~~~~p~~ 313 (671)
... .. + =++++..|...+.+ .....-..++.-++.|.++...+
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknnsd 153 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNSD 153 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcccc
Confidence 111 01 1 13555555554442 33334555666666776665433
No 368
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=30.56 E-value=4.1e+02 Score=23.99 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=48.3
Q ss_pred hhhhHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccC
Q 005891 316 HFLNDIFDTLLKALS-DPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (671)
Q Consensus 316 ~~l~~l~p~LL~~Ls-D~s~eV~~~~l~lLa~Is~----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L 387 (671)
.++..++|++.+.|. ...++.+-.+.-+++.++. +++-++.+|+.+++....... ...+=..+=++|..-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 467889999999999 7788999989889999885 455666677777665544432 122333444566555
No 369
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=29.80 E-value=2.6e+02 Score=33.45 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=23.2
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhh
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~ 319 (671)
-+++...|...+..++...-..++.+|....++.+......++
T Consensus 180 ~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lld 222 (647)
T PRK07994 180 VEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTD 222 (647)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3556666655543322222345666666666776666555554
No 370
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=29.50 E-value=1.5e+02 Score=26.49 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc
Q 005891 154 PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (671)
Q Consensus 154 p~fL~gLf~lL~D-~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~ 232 (671)
-.||..|.++.+| .++||...+......++. ..++.+++...|-..++++ ....++
T Consensus 7 k~FL~tLi~las~~~spev~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~------------------pqP~lv 63 (96)
T PF07531_consen 7 KNFLNTLIQLASDKQSPEVGENVRELVQNLVD-----GKIEAEEFTSKLQEELNSS------------------PQPYLV 63 (96)
T ss_dssp HHHHHHHHHHHCCSC-CCHHHHHHHHHHHHHT-----TSS-HHHHHHHHHHHCTSS--------------------TTHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhcCC------------------CCcchH
Confidence 4578888889999 888888887665555553 2245566665555555542 124567
Q ss_pred cchHhHHHHHhhhhcCC
Q 005891 233 PYYADILGAILPCISDK 249 (671)
Q Consensus 233 pflp~LLp~LL~~Lsd~ 249 (671)
||+.+-+|++-..+.+.
T Consensus 64 PFLK~~lp~Lr~~l~~~ 80 (96)
T PF07531_consen 64 PFLKKSLPALRQELPNC 80 (96)
T ss_dssp HHHHHHHHHHHHCHCHH
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 88888888888777654
No 371
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=29.24 E-value=1.2e+02 Score=26.65 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCC
Q 005891 213 RLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 213 rl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~ 270 (671)
|..++--+..++...|-++=+|+|+++..+-....| ...|+..+.++..++.+.-.+
T Consensus 6 rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 6 RHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 455677888889888888888999999998888775 667999999999888877543
No 372
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.08 E-value=2e+02 Score=32.94 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=54.2
Q ss_pred HHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhh--hHHHHHHHHHHhhcCC--chHHHHHH
Q 005891 18 LYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFII--FFNQIFDALCKLSADS--DANVQSAA 93 (671)
Q Consensus 18 ~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~--~f~eIf~~L~kL~~D~--d~~Vr~gA 93 (671)
.++++...-...-...+..|.+-++.++++|.++|...|..++|+|+..+-. -=.++++.+.++.... +..||+=+
T Consensus 24 eIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~ki 103 (470)
T KOG1087|consen 24 EICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKI 103 (470)
T ss_pred HHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHH
Confidence 6677776666667789999999999999999999999999999999864421 1135555555555433 44555433
No 373
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=29.00 E-value=4.3e+02 Score=24.99 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=52.2
Q ss_pred hHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhHhhhhh--HHHHH-HHHhcCC---CCHHHHHHHHHHHHHHh
Q 005891 277 VGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDT-LLKALSD---PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~~L~~-~~~~tRiaaL~WL~~L~~~~p~~i~~~l~--~l~p~-LL~~LsD---~s~eV~~~~l~lLa~Is 348 (671)
-.+.+..|.+.+.+ .+..+..-||.-+-.+.+.|+..+-...- ++... |++.+++ ....|+.+.+.++..-+
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 36788889999974 56777788899999999999987753222 33443 5566653 34588989998877766
No 374
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.17 E-value=2.5e+02 Score=32.99 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=24.0
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHH
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDI 321 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l 321 (671)
..++...+...+..++...-..++..+.....+........++++
T Consensus 180 ~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 180 LQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 355555565555443333334556666666666655555555444
No 375
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=27.47 E-value=7.6e+02 Score=26.14 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHHHhhChhhHhhhhh--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 292 WEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 292 ~~~tRiaaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
.+..|+++|.-++++......++..|+- +++|..++.+.-.++.-...|.-++.+|-.
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 4778999999999999988888887764 699999999987766666677777777763
No 376
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=27.28 E-value=3.9e+02 Score=26.86 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 129 ~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
.+-..++..+..+-...+..-.+++..++..|-++-.+++.+.|++++++++..++.+|
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG 73 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG 73 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC
Confidence 34444555555554444445567888888989889888999999999999999999998
No 377
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=27.23 E-value=7.4e+02 Score=25.95 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCChH--HHHHHHHHHHHHHH
Q 005891 157 LDGLFNMLSDSSHE--IRQQADSALWEFLQ 184 (671)
Q Consensus 157 L~gLf~lL~D~~~e--VR~~a~~~L~~ll~ 184 (671)
++.|++++.|++.+ ||.+|.++|..+..
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~ 142 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVH 142 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 44556788887655 89999888888775
No 378
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=26.98 E-value=5e+02 Score=26.50 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHH---HHHHHHHhhccchHHHHHHHHHhhcc------ccchhhhhHHHHHHHHHhccCCh-
Q 005891 320 DIFDTLLKALSDPSDEVVLLV---LEVHACIAKDLQHFRQLVVFLVHNFR------VDNSLLEKRGALIIRRLCVLLDA- 389 (671)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~~---l~lLa~Is~~~~~F~~fm~~LL~lf~------~d~~lLe~Rg~~IIR~Lc~~L~~- 389 (671)
.+...|+..|-..+..+..++ ..+|..+-+.+..|+.+|+--.+.=+ .-+..+|.| .-.|.||.+.|..
T Consensus 22 ~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkr-D~~IQqLqk~LK~a 100 (272)
T KOG4552|consen 22 HIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKR-DEVIQQLQKNLKSA 100 (272)
T ss_pred HHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 344445555544444444433 24455555666777776654443211 113444555 4567777776643
Q ss_pred HHHHHHHHHhhcccCChhHHHHHHHHHHHHhccchhHHHHHHHHHhc----cCCcchHHHHHHHHHhhccChHHH
Q 005891 390 ERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKS----LVNPAGKDLFVSLYASWCHSPMAI 460 (671)
Q Consensus 390 E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~----l~~~~~~~lF~~L~~~w~~n~vs~ 460 (671)
|.|.. .-.+.-|.+|+.. +..-.+.+|..---+.=.||+|+|
T Consensus 101 E~iLt-----------------------------ta~fqA~qKLksi~~A~krpvsSEelIKyAHrIS~~NaVsA 146 (272)
T KOG4552|consen 101 EVILT-----------------------------TACFQANQKLKSIKEAEKRPVSSEELIKYAHRISKHNAVSA 146 (272)
T ss_pred HHHHH-----------------------------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhcccccC
Confidence 22211 1233445666641 122234566666666677898876
No 379
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.79 E-value=3.6e+02 Score=31.38 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=27.8
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHH
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~ 322 (671)
.+++.+.+...+..++...-..++..+.....+.+......+++.+
T Consensus 180 ~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai 225 (527)
T PRK14969 180 PPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4566666666554433333446677777777777777666665543
No 380
>PF07834 RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IPR009109 Ran GTPase is a ubiquitous protein required for nuclear transport, spindle assembly, nuclear assembly and mitotic cell cycle regulation. RanGTPase activating protein 1 (RanGAP1) is one of several RanGTPase accessory proteins. During interphase, RanGAP1 is located in the cytoplasm, while during mitosis it becomes associated with the kinetochores []. Cytoplasmic RanGAP1 is required for RanGTPase-directed nuclear transport. The activity of RanGAP1 requires the accessory protein RanBP1. RanBP1 facilitates RanGAP1 hydrolysis of Ran-GTP, both directly and by promoting the dissociation of Ran-GTP from transport receptors, which would otherwise block RanGAP1-mediated hydrolysis. RanGAP1 is thought to bind to the Switch 1 and Switch 2 regions of RanGTPase. The Switch 2 region can be buried in complexes with karyopherin-beta2, and requires the interaction with RanBP1 to permit RanGAP1 function. RanGAP1 can undergo SUMO (small ubiquitin-like modifier) modification, which targets RanGAP1 to RanBP2/Nup358 in the nuclear pore complex, and is required for association with the nuclear pore complex and for nuclear transport []. The enzymes involved in SUMO modification are located on the filaments of the nuclear pore complex. The RanGAP1 N-terminal domain is fairly well conserved between vertebrate and fungal proteins, but yeast does not contain the C-terminal domain. The C-terminal domain is SUMO-modified and required for the localisation of RanGAP1 at the nuclear pore complex. The structure of the C-terminal domain is multihelical, consisting of two curved alpha/alpha layers in a right-handed superhelix.; GO: 0005098 Ran GTPase activator activity, 0007165 signal transduction; PDB: 2IO2_C 2GRQ_B 3UIN_C 2GRO_B 3UIP_C 2IO3_C 2GRN_B 3UIO_C 2GRP_B 2GRR_B ....
Probab=26.52 E-value=3.3e+02 Score=27.19 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=48.7
Q ss_pred hhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHh
Q 005891 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (671)
Q Consensus 25 ~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdI 103 (671)
.+..||..=.+.-|-+|+|+-... |............-+.|=.+..++.| +.+||.++ +..|++++..
T Consensus 30 ~v~~FL~~PS~ekLl~LG~~rs~l----------i~qqvd~~d~~k~~e~~lKVsSv~~~-~~~vk~av~~~~Dall~ka 98 (183)
T PF07834_consen 30 TVATFLSSPSPEKLLQLGDKRSQL----------IAQQVDTSDPEKVAEAFLKVSSVYND-ESEVKSAVLQCIDALLKKA 98 (183)
T ss_dssp HHHHHHHS--HHHHHCTGTTHHHH----------HHHCS-TTSHHHHHHHHHHHHCT--S-SHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCCCHHHHHHhChHHHHH----------HHHHHccccHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHH
Confidence 346677777777788888762221 22211111111122333344445566 58999998 8999999988
Q ss_pred hcccchhhhhhhHHHHHHhhc
Q 005891 104 VTESDQFSIEEFIPLLRERMN 124 (671)
Q Consensus 104 v~e~~~f~L~~fIP~L~e~i~ 124 (671)
.+.. .+....|+..|+=.|.
T Consensus 99 Fs~~-~~~~~~f~n~LLV~mG 118 (183)
T PF07834_consen 99 FSSA-SFQSNSFLNSLLVHMG 118 (183)
T ss_dssp HCST-TS-HHHHHHHHHHHTT
T ss_pred Hhcc-ccchHHHHHHHHHHhc
Confidence 8743 4456666666665554
No 381
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=26.38 E-value=6e+02 Score=29.59 Aligned_cols=72 Identities=15% Similarity=0.237 Sum_probs=54.3
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCC----------------------------CCChHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005891 251 EKIRVVARETNEELRAIKADPAD----------------------------GFDVGPILSIATRQLSSEWEATRIEALHW 302 (671)
Q Consensus 251 ~eIR~~A~~~n~~L~~~i~~~~~----------------------------~~dl~~il~~L~~~L~~~~~~tRiaaL~W 302 (671)
+|+.-....+...|++...+++. .++.+.|...|..-+..++...=..||.|
T Consensus 126 DEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ 205 (515)
T COG2812 126 DEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSL 205 (515)
T ss_pred ecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHH
Confidence 46666677777778877766532 14557888888888888888888899999
Q ss_pred HHHHHhhChhhHhhhhhHHH
Q 005891 303 ISTLLNRHRTEVLHFLNDIF 322 (671)
Q Consensus 303 L~~L~~~~p~~i~~~l~~l~ 322 (671)
+...+++...+-..-+|..+
T Consensus 206 ia~~a~Gs~RDalslLDq~i 225 (515)
T COG2812 206 IARAAEGSLRDALSLLDQAI 225 (515)
T ss_pred HHHHcCCChhhHHHHHHHHH
Confidence 99999998888776666543
No 382
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=26.11 E-value=99 Score=30.49 Aligned_cols=48 Identities=25% Similarity=0.370 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhh
Q 005891 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (671)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~ 244 (671)
++...-++.+-... +|+.||..|+.|+. ..+++++..|+|+++.++--
T Consensus 69 i~~~~aLeLL~~~f--~d~~VR~yAV~~L~---~~sd~eL~~yL~QLVQaLKy 116 (171)
T cd00872 69 LKPEQALELLDCNF--PDEHVREFAVRCLE---KLSDDELLQYLLQLVQVLKY 116 (171)
T ss_pred CCHHHHHHHCCCcC--CCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHc
Confidence 55555555555433 36899999999997 46677888899988877544
No 383
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=25.97 E-value=1.2e+02 Score=38.39 Aligned_cols=33 Identities=27% Similarity=0.571 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH
Q 005891 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (671)
Q Consensus 126 ~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf 161 (671)
++..||..|++||.. .++.++..|||.|++.|-
T Consensus 902 PDqeVR~~AVqwi~~---ls~DeL~d~LPQlVQALK 934 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIAR---LSNDELLDYLPQLVQALK 934 (1639)
T ss_pred CcHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHH
Confidence 788999999999965 577899999999999885
No 384
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=25.61 E-value=1.9e+02 Score=31.55 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=58.3
Q ss_pred HhhcCCchHHHHHH--HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHH-HHHHHHHHHHHhhcCCchhHHhchHHH
Q 005891 80 KLSADSDANVQSAA--HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPY-VRQFLVGWITVLDSVPDIDMLGFLPDF 156 (671)
Q Consensus 80 kL~~D~d~~Vr~gA--~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~-vR~~alswL~~L~~ip~~~li~~Lp~f 156 (671)
+.+.++.++++++- ..+|++.||-+. ++-.|.+.++..+|. .-+.||+=|..+. ...|+.
T Consensus 329 g~l~wSp~H~~~dFWs~N~d~l~kdny~---------i~k~L~~~lq~n~~nt~i~vAc~Di~~~V--------r~~PE~ 391 (432)
T COG5231 329 GRLEWSPYHHKKDFWSTNLDMLIKDNYE---------IVKVLKKYLQSNNPNTWICVACSDIFQLV--------RASPEI 391 (432)
T ss_pred CcccCCCcccccCchhhhHHHHhhhhHH---------HHHHHHHHHhcCCCCceEeeeHhhHHHHH--------HhCchH
Confidence 34688899999887 678998886553 455666777766665 2344444444433 333443
Q ss_pred HH---------HHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891 157 LD---------GLFNMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 157 L~---------gLf~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
-. .++.+++.++++||=.|.+++..+..
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 22 34689999999999988777766543
No 385
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=25.23 E-value=1.3e+02 Score=27.46 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=29.0
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAK 61 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~K 61 (671)
.+-.-.++-+++.+.|++..|+..|.+.+++.+.
T Consensus 4 ~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 4 DFEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3445677888999999999999999999999875
No 386
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.31 E-value=2.4e+02 Score=25.82 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=54.0
Q ss_pred CChHhHHHHHHHhc---CCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcC-----CC-----CHHHHHHHH
Q 005891 275 FDVGPILSIATRQL---SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-----DP-----SDEVVLLVL 341 (671)
Q Consensus 275 ~dl~~il~~L~~~L---~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls-----D~-----s~eV~~~~l 341 (671)
.++..|++++...| ...+|....-||.-|..|....++.+...+..-...+ +.|. |+ ...||.+|-
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I-~~l~~f~~~d~~g~d~~~~VR~~A~ 113 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDII-RELQDFQYVDPKGKDQGQNVREKAK 113 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHH-HGGGG---BBTTSTBHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-hhcceeeccCCCCccHHHHHHHHHH
Confidence 45789999999999 6778999999999999999999998876665433322 2222 22 235888888
Q ss_pred HHHHHHhh
Q 005891 342 EVHACIAK 349 (671)
Q Consensus 342 ~lLa~Is~ 349 (671)
+++..+.+
T Consensus 114 ~i~~lL~d 121 (125)
T PF01417_consen 114 EILELLND 121 (125)
T ss_dssp HHHHHHTS
T ss_pred HHHHHhCC
Confidence 88877653
No 387
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=24.18 E-value=1.4e+02 Score=28.83 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHH
Q 005891 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (671)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~L 242 (671)
++....++.+-.... ++.||..|+.++.. .+.+++.-|+|+++.++
T Consensus 69 ~~~~~aL~LL~~~~~--~~~vr~yAv~~L~~---~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 69 LSPEDALELLSPKYP--DPVVRQYAVRVLES---ASDDELLLYLPQLVQAL 114 (152)
T ss_pred CCHHHHHHHcCCcCC--CHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 555556666554433 58999999999964 56677888888888776
No 388
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.95 E-value=3.9e+02 Score=32.33 Aligned_cols=28 Identities=14% Similarity=-0.006 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHhhcc
Q 005891 339 LVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (671)
Q Consensus 339 ~~l~lLa~Is~~~~~F~~fm~~LL~lf~ 366 (671)
.++.++..+......|..|+..|+.+++
T Consensus 263 ~al~~l~~L~~~G~d~~~~l~~L~~~l~ 290 (709)
T PRK08691 263 ALLAKAQEMAACAVGFDNALGELAILLQ 290 (709)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3455555555556667777777776654
No 389
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=23.73 E-value=6.8e+02 Score=25.55 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcc-----c-chhhhhhhHHHHHHhhc--CCCHHHHHHHHHHHHHh
Q 005891 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE-----S-DQFSIEEFIPLLRERMN--VLNPYVRQFLVGWITVL 141 (671)
Q Consensus 70 ~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e-----~-~~f~L~~fIP~L~e~i~--~~np~vR~~alswL~~L 141 (671)
.-..||.+||+.+.-.....|+-|+.+....+..-.+ . ++-..+..+--..+++. ...-+-|.++++....+
T Consensus 70 ~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f~YSRl~AIGL~~LL 149 (206)
T PLN03060 70 DRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVLKDIAERAAGKTKFHYSRFFAIGLFRLL 149 (206)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccccchHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Confidence 3568999999998766667888786555444411110 0 00011112222233332 23457888888888887
Q ss_pred hcCCchhHHhchHHHHHHHHHhcCCCCh
Q 005891 142 DSVPDIDMLGFLPDFLDGLFNMLSDSSH 169 (671)
Q Consensus 142 ~~ip~~~li~~Lp~fL~gLf~lL~D~~~ 169 (671)
....+. =|+.+..|..-|+=+..
T Consensus 150 e~a~~~-----d~~~l~~l~~~L~ls~~ 172 (206)
T PLN03060 150 ECAKAS-----DPAVLEKLSKALNVSKR 172 (206)
T ss_pred HHcCCC-----CHHHHHHHHHHcCCCHH
Confidence 665543 22355555544444443
No 390
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=23.17 E-value=2.2e+02 Score=27.70 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=38.0
Q ss_pred CCCCh---HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh
Q 005891 273 DGFDV---GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 317 (671)
Q Consensus 273 ~~~dl---~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~ 317 (671)
+.|.+ ..++|.+...+.+..+....+|+.|+..+...+.+.+...
T Consensus 60 ~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~~~ 107 (164)
T PF13925_consen 60 EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIRSN 107 (164)
T ss_pred CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34655 3888999999999999999999999999999988777643
No 391
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.08 E-value=1.2e+03 Score=29.77 Aligned_cols=150 Identities=18% Similarity=0.204 Sum_probs=73.5
Q ss_pred hhHHHHHhccCCCC-HHHHHHHHHHHHHH-HHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccch
Q 005891 32 QIVPPVLNSFSDQD-SRVRYYACEALYNI-AKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQ 109 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d-~rVR~~A~eaL~nI-~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~ 109 (671)
+++..++.+-.|.+ .+-+.+.-..+..+ +.+++++--..|++.++.+...+.-+++...+....+.++.+|...-++.
T Consensus 91 ~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~ 170 (1041)
T KOG2020|consen 91 YVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFDFSSS 170 (1041)
T ss_pred HHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcccch
Confidence 44444544444443 33344444444443 45555554455677777777767655555555557778888877653322
Q ss_pred hhhhhhHHHHHHhhc------------CC-CHHHHHHHHHHHHHhhc----CCchhHHhchHHHHHHHHHhcCCCChHHH
Q 005891 110 FSIEEFIPLLRERMN------------VL-NPYVRQFLVGWITVLDS----VPDIDMLGFLPDFLDGLFNMLSDSSHEIR 172 (671)
Q Consensus 110 f~L~~fIP~L~e~i~------------~~-np~vR~~alswL~~L~~----ip~~~li~~Lp~fL~gLf~lL~D~~~eVR 172 (671)
.....=.+.+...+. .. +..-+ .+..|+..+.. +|- ..+---. .++.++.. .-+.++.|
T Consensus 171 ~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~-~~~atl~tl~~fl~wip~-~~I~~tn-~l~~~l~~-~ln~~~~r 246 (1041)
T KOG2020|consen 171 ELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSE-LLSATLETLLRFLEWIPL-GYIFETN-ILELLLNK-FLNAPELR 246 (1041)
T ss_pred HHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhcccH-HHHHHhh-hHHHHHHh-ccchHHHH
Confidence 222333333333322 11 11122 44444444322 221 1111111 13333321 22457899
Q ss_pred HHHHHHHHHHHHH
Q 005891 173 QQADSALWEFLQE 185 (671)
Q Consensus 173 ~~a~~~L~~ll~~ 185 (671)
..|.+||..+...
T Consensus 247 ~~al~CL~ei~s~ 259 (1041)
T KOG2020|consen 247 NNALSCLTELLSR 259 (1041)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998864
No 392
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.96 E-value=9.7e+02 Score=25.82 Aligned_cols=202 Identities=16% Similarity=0.161 Sum_probs=113.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc----hhHHhchHHHHHHHHHhcCCC-----C--------hHHHHHHHHH
Q 005891 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPD----IDMLGFLPDFLDGLFNMLSDS-----S--------HEIRQQADSA 178 (671)
Q Consensus 116 IP~L~e~i~~~np~vR~~alswL~~L~~ip~----~~li~~Lp~fL~gLf~lL~D~-----~--------~eVR~~a~~~ 178 (671)
+..+-..+....+.....++..+..+..-.+ .++..+++-=++++-+++.-. . ++||......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6666777777777777777777777777333 234444443344444443211 1 2899988877
Q ss_pred HHHHHHHhhcCCCC---ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC-----cCcccchHhHHHHHhhhhcCCc
Q 005891 179 LWEFLQEIKNSPSV---DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-----DQLVPYYADILGAILPCISDKE 250 (671)
Q Consensus 179 L~~ll~~I~~~~~~---d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~-----~~l~pflp~LLp~LL~~Lsd~~ 250 (671)
+-.|++.-...... .-..++..+...+...++++-...++.+.+-+-..+ ....-|-+..+..+.....+.+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 77777533210000 123456777777777666666666776654332211 1122356666777777666555
Q ss_pred H----hHHHHHHHHHHHHHHhcCCCCCCC-------------------------C-hHhHHHHHHHhcCCCcHHHHHHHH
Q 005891 251 E----KIRVVARETNEELRAIKADPADGF-------------------------D-VGPILSIATRQLSSEWEATRIEAL 300 (671)
Q Consensus 251 ~----eIR~~A~~~n~~L~~~i~~~~~~~-------------------------d-l~~il~~L~~~L~~~~~~tRiaaL 300 (671)
+ .+++.+.+.. +.++.+++.++ . ...++-.+.+.+. ..+..+..-
T Consensus 218 ~~~~~~~~~~vh~fL---~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lk-p~e~~~q~~- 292 (330)
T PF11707_consen 218 EDEKSSVADLVHEFL---LALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLK-PWEDDRQQE- 292 (330)
T ss_pred CcccchHHHHHHHHH---HHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCC-CCccHHHHH-
Confidence 5 6666665554 44443322111 0 1234444545554 333334443
Q ss_pred HHHHHHHhhChhhHhhhhhHHHH
Q 005891 301 HWISTLLNRHRTEVLHFLNDIFD 323 (671)
Q Consensus 301 ~WL~~L~~~~p~~i~~~l~~l~p 323 (671)
-+..+.+.||+=+.+|+...-.
T Consensus 293 -Lvl~Il~~~PeLva~Y~~~~~~ 314 (330)
T PF11707_consen 293 -LVLKILKACPELVAPYFNNLPY 314 (330)
T ss_pred -HHHHHHHHChHHHHHHHHhhhh
Confidence 3888999999998888876643
No 393
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=22.89 E-value=9.3e+02 Score=25.55 Aligned_cols=61 Identities=23% Similarity=0.282 Sum_probs=51.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhhHhhhhh--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005891 290 SEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (671)
Q Consensus 290 ~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~--~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~ 350 (671)
.+.+.-|+++|.-|+++.+....++..|+- +++|..++.+.-.++.-...+.-++.+|-.+
T Consensus 136 r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 136 RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD 198 (293)
T ss_pred CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc
Confidence 345778999999999999999999887764 6899999999888887777788888887743
No 394
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=22.89 E-value=1.5e+03 Score=28.93 Aligned_cols=211 Identities=14% Similarity=0.119 Sum_probs=105.6
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
..+....+.+.++=...+-|=+-.+...+.....-..++....+.++...++.++ +..||.|| ..|-+....+- .
T Consensus 31 ~~~a~~~l~~~~~~~~~~~kpa~~~~~e~~~~~~~~~~~~~~k~~ldlf~klas~-l~~~r~~aa~~Ll~~lq~~~---~ 106 (1129)
T KOG1926|consen 31 MKYALKRLITGLGVGRETAKPALAQLLESFEDLPLCSILQQIKEKLDLFTKLASS-LRPVRLAAAFQLLADLQELR---D 106 (1129)
T ss_pred HHHHHHHhhhccCcCcCCCCcchhhhhhccccccchhhhccchHHHHHHHHHHhh-cHHHHHHHHHHHHHHHhhhh---h
Confidence 3344444444444333333333233333332222222333345667777777777 88888888 43332222111 1
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHh-
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEI- 186 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~-D~~~eVR~~a~~~L~~ll~~I- 186 (671)
+--....+-.|..-..+.-..+|....-.++.+.-++.++--..|..++..+..-.+ =+..+.|..+...|-.+-...
T Consensus 107 ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~~~kai~a~~vL~~i~~~~~~~~~~~~gkd~k~~~~G~Lf~l~si~~ 186 (1129)
T KOG1926|consen 107 AEELSYVLNRLIRGLSSDRESARLGFSLILTEVLRPKAIEATSVLSTILQVLLVSSAKMKGKDEKLVAFGNLFGLESILQ 186 (1129)
T ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhhhcccccCccccchhhhhHHHHHHHHh
Confidence 223444555555555667778999999999988877777766677777776654444 344555544322221111111
Q ss_pred --------hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc
Q 005891 187 --------KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (671)
Q Consensus 187 --------~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls 247 (671)
...+..++..|...++.-....+| .+-.|.+.+...++..|. .||....++++++.+.
T Consensus 187 s~~l~~~~s~k~~e~~~~f~~~l~~LA~kk~~-L~~~c~~il~~sv~qlp~--~~~~~~~~ea~~~~l~ 252 (1129)
T KOG1926|consen 187 SGILKEASSVKKDEKFKRFTDLLLQLALKKNW-LQEPCVEILLLSVKQLPA--SPFEEHVLEALLPLLT 252 (1129)
T ss_pred hhHHHhhhhccccHHHHHHHHHHHHHhhhHHH-HHhHHHHHHHHHHHhccc--hHHHHHHHHhhhhhcC
Confidence 111112345555555544444332 223344444444443342 3455666666666554
No 395
>PHA01351 putative minor structural protein
Probab=22.87 E-value=1.1e+03 Score=28.66 Aligned_cols=160 Identities=16% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHH
Q 005891 53 CEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQ 132 (671)
Q Consensus 53 ~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~ 132 (671)
.+++.|++.-...+...+.|.+.+.+-...+=--.-+-.-|.......-|+|+....| ...++|.+ +
T Consensus 30 l~~len~vn~istdf~~f~nai~~d~e~~~s~i~~~~s~~~tf~q~~~~d~v~~lqn~-a~~~~~~l------------~ 96 (1070)
T PHA01351 30 IENLENFTNWISSDFINFINAIVNDIKNIASFLGQAISDIPTFMQNIATNFLTILQNF-VQTAISTI------------Q 96 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------------H
Q ss_pred HHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC----------------------
Q 005891 133 FLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP---------------------- 190 (671)
Q Consensus 133 ~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~---------------------- 190 (671)
...+|+..-....=.++..+-.++...+.....|-..+.-.-.-..+.++...+++.+
T Consensus 97 ~~~~~~a~~~~~~~~~l~~~a~~~~~s~~~~~~~i~n~~~q~~~~~isd~~~~~~~~~~~i~~~l~~~~~~l~~~i~p~~ 176 (1070)
T PHA01351 97 GFVSWFEQQIVGAFEFLSSIASDFINSAYSFFQNVANDFAQIISGVISDFLNFFGANMKHISNAISQLSQFLSPFIAPIT 176 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhHHHHHHHHHHHHHHHH
Q ss_pred --------------------------------CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 005891 191 --------------------------------SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVK 225 (671)
Q Consensus 191 --------------------------------~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~ 225 (671)
.+.+++++...-+...+-=.+++-+.+..+.++++
T Consensus 177 i~r~lp~~vdklaellpef~i~lapvg~g~k~~ik~g~i~k~~~e~~~d~lkdi~de~~tt~ke~ik 243 (1070)
T PHA01351 177 IGKFLPVIVDKLAEILPEFEIDLAPVGLGGKIPIKFGEIIKAFAETSVDFLNEIRDELATTLKEFIK 243 (1070)
T ss_pred HHccCchHHHHHHHhCccceecccccccCccceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 396
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=22.81 E-value=1.3e+02 Score=29.48 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhh
Q 005891 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (671)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~ 244 (671)
++....++.+-... +++.||..|+.||.. ..++++.-|+|+++.++--
T Consensus 76 i~~~~aLeLL~~~f--~~~~VR~yAV~~L~~---~sd~eL~~yL~QLVQaLKy 123 (166)
T cd00870 76 IDIEDALELLSPYF--TNPVVRKYAVSRLKL---ASDEELLLYLLQLVQALKY 123 (166)
T ss_pred CCHHHHHHHcCccC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHh
Confidence 56666666665444 478999999999974 6677788888888776654
No 397
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.64 E-value=5.3e+02 Score=22.68 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=45.2
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVK 101 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~---~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllK 101 (671)
.|...++..++.|--|.+..-|.+++.-+..+.+.- +..+..-|..+++.+-.+.-|......+.|..+.+++.
T Consensus 32 ~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~ 108 (113)
T smart00544 32 EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLIS 108 (113)
T ss_pred cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHH
Confidence 477788888888888887778888877777776421 11223334455555555555544445555555555543
No 398
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=22.50 E-value=7.5e+02 Score=27.34 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=96.2
Q ss_pred hhhhhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCC--------------hHHHH
Q 005891 109 QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS--------------HEIRQ 173 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~-~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~--------------~eVR~ 173 (671)
..++......+.+++. ..||.|=.+++.-+....+--..=.-.-+..+-..|++++.|.. .|+..
T Consensus 136 ~l~is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~ 215 (356)
T PF03542_consen 136 YLPISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQV 215 (356)
T ss_pred eeeHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHH
Confidence 5778888888999886 48999988887766643221110000116667777777776643 24444
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhH
Q 005891 174 QADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI 253 (671)
Q Consensus 174 ~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eI 253 (671)
.....|..+..-=..=...+-++||..+..-+.++ ....|+..+.-.+--.|..+.+++|.++.-+-+...-.
T Consensus 216 ~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~---- 288 (356)
T PF03542_consen 216 CVFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTP---- 288 (356)
T ss_pred HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccch----
Confidence 44444444432110000112457777777766552 44567888877777778777766666665554433322
Q ss_pred HHHHHHHHHHHHHhcCCC---CCCC---ChHhHHHHHHHhcCCC
Q 005891 254 RVVARETNEELRAIKADP---ADGF---DVGPILSIATRQLSSE 291 (671)
Q Consensus 254 R~~A~~~n~~L~~~i~~~---~~~~---dl~~il~~L~~~L~~~ 291 (671)
.+|.-..+=|..+..-+ -..+ +|..+..+.....+..
T Consensus 289 -~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~~~ 331 (356)
T PF03542_consen 289 -NMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQPS 331 (356)
T ss_pred -hhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccchh
Confidence 23333333333222211 0112 3566777777777643
No 399
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=22.43 E-value=2.9e+02 Score=30.90 Aligned_cols=55 Identities=9% Similarity=0.017 Sum_probs=36.9
Q ss_pred HHHHHHhcCCCCCCCCh-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHh
Q 005891 261 NEELRAIKADPADGFDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 315 (671)
Q Consensus 261 n~~L~~~i~~~~~~~dl-~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~ 315 (671)
++.+++++...++..+. ...+..+.+++.+.+..+-+-||..+.++...|++.+.
T Consensus 26 W~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r 81 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFR 81 (462)
T ss_pred HHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHH
Confidence 34455555433333343 47777888888877777788888888888888877653
No 400
>PF14961 BROMI: Broad-minded protein
Probab=22.37 E-value=1.9e+02 Score=36.78 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhh--hhHHHHHHHHHHhhcCCchHHHHHH-HHHHH
Q 005891 43 DQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDALCKLSADSDANVQSAA-HLLDR 98 (671)
Q Consensus 43 D~d~rVR~~A~eaL~nI~Kv~~~~il--~~f~eIf~~L~kL~~D~d~~Vr~gA-~~Ldr 98 (671)
++-.+||..|++.| ++..-++++ .+|+.+...|...++|+|+.+...+ ....+
T Consensus 173 ~~P~evR~eAlq~L---c~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak 228 (1296)
T PF14961_consen 173 GQPKEVRLEALQIL---CSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAK 228 (1296)
T ss_pred CCchHHHHHHHHHH---hcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 55689999998885 444444554 6799999999999999999988877 44444
No 401
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=21.93 E-value=3.9e+02 Score=23.22 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=40.0
Q ss_pred ccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHH
Q 005891 421 LTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASA 475 (671)
Q Consensus 421 LTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lslcll~~~y~~a~~ 475 (671)
||..+..+++..=.+.-.....+.|+.+|-+||-=|...+|--||-.-.|.+...
T Consensus 32 L~~~~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~~la~ 86 (88)
T cd08812 32 LTDEDKEQILAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALRRTGNDDLAK 86 (88)
T ss_pred cCHHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCccHHH
Confidence 4566666666654331123456889999999999999999999999888876654
No 402
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.66 E-value=1.5e+03 Score=27.41 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=100.5
Q ss_pred HHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHh--hcccchh---hhhhhHHHHHHhhcC--CCHH-HHHHHHHHHHHhh
Q 005891 72 NQIFDALCKLSADSDANVQSAA-HLLDRLVKDI--VTESDQF---SIEEFIPLLRERMNV--LNPY-VRQFLVGWITVLD 142 (671)
Q Consensus 72 ~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdI--v~e~~~f---~L~~fIP~L~e~i~~--~np~-vR~~alswL~~L~ 142 (671)
++.+|++..++-|+++.+|.-| ..+.++-+.- .+. .++ ..+.+...+... .. .++. +-+|=-+....+.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~-~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~ 196 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD-EEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILR 196 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch-hhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHH
Confidence 5777888888889999999999 5566643321 111 112 122233332222 11 1221 1121111111233
Q ss_pred cCCchhHHhchHH-----HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC-----CCCh----------HHHHHHHH
Q 005891 143 SVPDIDMLGFLPD-----FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-----SVDY----------GRMAEILV 202 (671)
Q Consensus 143 ~ip~~~li~~Lp~-----fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~-----~~d~----------~~iI~iLl 202 (671)
.+....+..++.. +..-+++-+.++..+.-....+++..|++..+... .... +.+-+.|.
T Consensus 197 ~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~~L~ 276 (727)
T PF12726_consen 197 LLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKKLLL 276 (727)
T ss_pred HccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHHHHH
Confidence 3444444444444 66667777877755555666789999999887532 1112 22333444
Q ss_pred HhcCCCCHHHH---HHHHHHHHHHHhh-cCcCcccchHhHHHHHhhhhcCC-cH-hHHHHHHHH
Q 005891 203 QRAASPDEFTR---LTAITWINEFVKL-GGDQLVPYYADILGAILPCISDK-EE-KIRVVARET 260 (671)
Q Consensus 203 ~~~~s~d~~ir---l~al~WI~~~~~l-~~~~l~pflp~LLp~LL~~Lsd~-~~-eIR~~A~~~ 260 (671)
+...+.....- -..+.|+..|+.- .+..-.+-..+++..++.-+.++ .+ +.|..+..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~~l~~~Ll~~~q~~~~~~~~r~~c~~~ 340 (727)
T PF12726_consen 277 QSQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACRKLLHFLLERLQHDRFPDEARAACLRA 340 (727)
T ss_pred hhccCCccccchhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 43333322111 2357899999874 44444555778888888877743 33 366666543
No 403
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.61 E-value=1.5e+03 Score=27.45 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccc-hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhHHhc
Q 005891 75 FDALCKLSADSDANVQSAAHLLDRLVKDIVTESD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGF 152 (671)
Q Consensus 75 f~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~-~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~-~~li~~ 152 (671)
+..|-+.+-..++.+|.||- |.- .|+. ++ ....+..+-+|.+.+...+..+|..++--+...-+-.. .++.
T Consensus 417 L~qldkylys~~~~ikaGaL-Lgi---gi~~-~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~-- 489 (878)
T KOG2005|consen 417 LEQLDKYLYSDESYIKAGAL-LGI---GISN-SGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVL-- 489 (878)
T ss_pred HHHHHHHhhcCCchhhhccc-eee---eeec-cccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHH--
Confidence 44444555455556666661 100 1111 11 11234456677777777777888777666654433222 2222
Q ss_pred hHHHHHHHHHhcCCCChHHHH
Q 005891 153 LPDFLDGLFNMLSDSSHEIRQ 173 (671)
Q Consensus 153 Lp~fL~gLf~lL~D~~~eVR~ 173 (671)
.-|..++.|++...-.
T Consensus 490 -----~lL~Pi~~d~~~~~ev 505 (878)
T KOG2005|consen 490 -----ELLSPIMFDTKSPMEV 505 (878)
T ss_pred -----HHHhHHhcCCCCchhH
Confidence 2333466776665333
No 404
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=21.49 E-value=3.7e+02 Score=30.47 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=48.7
Q ss_pred HHHHHHHHHHh-hccchHHHHHHHHHhhccccchhhhhHHHHHHH---HHhccCChHHHHHHHHHhhcccCChhHH
Q 005891 338 LLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIR---RLCVLLDAERVYRELSTILEGEADLDFA 409 (671)
Q Consensus 338 ~~~l~lLa~Is-~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR---~Lc~~L~~E~Iy~~la~iL~~~~dl~F~ 409 (671)
..+|++|..++ +++++|-+...+++++|.. +||..---.+.. +|---|++|..|..++.+........|.
T Consensus 491 dlacRIwDvy~rdgeeFlfr~~lgIlklyep--kLl~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~sr~kkws 564 (586)
T KOG2223|consen 491 DLACRIWDVYCRDGEEFLFRTALGILKLYEP--KLLVMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQSRSKKWS 564 (586)
T ss_pred HHhhhhhheeeecchHHHHHHHHHHHHHccc--hHhhhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhhhchhHH
Confidence 35778888888 6788888888899999863 455432222322 3334478899999999998776666663
No 405
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=21.42 E-value=2.5e+02 Score=33.68 Aligned_cols=39 Identities=36% Similarity=0.365 Sum_probs=34.0
Q ss_pred hHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc
Q 005891 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR 64 (671)
Q Consensus 26 ~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~ 64 (671)
...|++-|+.-......+-+..+|+.++..+..|++-..
T Consensus 240 sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~ 278 (993)
T COG5234 240 SHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLP 278 (993)
T ss_pred hhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcc
Confidence 356899999999999999999999999999988887543
No 406
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=20.90 E-value=9.2e+02 Score=31.61 Aligned_cols=112 Identities=22% Similarity=0.307 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHh--hccchHHH--HHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHHHHhhcc----cCChh
Q 005891 336 VVLLVLEVHACIA--KDLQHFRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG----EADLD 407 (671)
Q Consensus 336 V~~~~l~lLa~Is--~~~~~F~~--fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~----~~dl~ 407 (671)
-|..+-+.|..|. ++++-++- -+-+|...+.++..+ .-++-+.|..-+|-.||.+|+.|++. .++.+
T Consensus 1477 AR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl-----~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~e 1551 (1710)
T KOG1070|consen 1477 ARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL-----KKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADE 1551 (1710)
T ss_pred HHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH-----HHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHH
Confidence 3555666666665 22222221 233444445544443 23788899999999999999999986 24455
Q ss_pred HHHHHHHHHH----------HHhccchhHHHHHHHHHhcc-----------------------CCcchHHHHHHHHHh
Q 005891 408 FACTMVQALN----------LILLTSSELSELRDLLKKSL-----------------------VNPAGKDLFVSLYAS 452 (671)
Q Consensus 408 F~~~mVq~Ln----------~iLLTs~El~~lR~~L~~~l-----------------------~~~~~~~lF~~L~~~ 452 (671)
....|+...- .-||+-.|-+.-|..|.+.| +.++|+.+|+.+..+
T Consensus 1552 ll~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1552 LLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 5556654433 45677777777777777543 456788888888553
No 407
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=20.28 E-value=1.3e+03 Score=26.21 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCCCChHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc-ccchHhHHHHHhh
Q 005891 167 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAE-ILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYYADILGAILP 244 (671)
Q Consensus 167 ~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~-iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l-~pflp~LLp~LL~ 244 (671)
..-..|..|.++|+.++..+.. .....+.. .++.+++++...-|+.|.--|.++....+..- .+..+.+.+.+..
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3345788899999999998843 45666665 68889999888888887777777776644221 1113566667777
Q ss_pred hhcCC
Q 005891 245 CISDK 249 (671)
Q Consensus 245 ~Lsd~ 249 (671)
++.++
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 77633
No 408
>PRK13266 Thf1-like protein; Reviewed
Probab=20.02 E-value=7.2e+02 Score=25.73 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH-----hhc---ccchhhhhhhHHHHHHhhc-CCCHHHHHHHHHHHHH
Q 005891 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKD-----IVT---ESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITV 140 (671)
Q Consensus 70 ~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKd-----Iv~---e~~~f~L~~fIP~L~e~i~-~~np~vR~~alswL~~ 140 (671)
.-..||.+||+.+.-.....|.-|+.+-...+. ++. ..+.-..+.+.-.+..... ...-+-|.++|+....
T Consensus 72 ~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~~~l~~ia~~~~f~YSRl~AIGL~~L 151 (225)
T PRK13266 72 HKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGEPGGLLATLLAIANNSKFKYSRLFAIGLYTL 151 (225)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccccchhHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 356899999998876666778877655444441 111 1111112223333333322 2334778888888777
Q ss_pred hhcCCc
Q 005891 141 LDSVPD 146 (671)
Q Consensus 141 L~~ip~ 146 (671)
+....+
T Consensus 152 Le~a~~ 157 (225)
T PRK13266 152 LEEAQP 157 (225)
T ss_pred HHhcCc
Confidence 765544
Done!