Query 005891
Match_columns 671
No_of_seqs 291 out of 735
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 99.9 3.4E-24 1.2E-28 254.2 44.2 368 28-402 86-494 (852)
2 1b3u_A Protein (protein phosph 99.9 4.2E-23 1.4E-27 231.6 30.9 309 28-349 238-548 (588)
3 1b3u_A Protein (protein phosph 99.9 4E-23 1.4E-27 231.8 29.7 377 29-420 161-547 (588)
4 4fdd_A Transportin-1; heat rep 99.9 3E-21 1E-25 228.8 46.2 432 26-461 250-791 (852)
5 1ibr_B P95, importin beta-1 su 99.9 8.9E-21 3E-25 206.2 30.1 331 29-366 87-461 (462)
6 2bpt_A Importin beta-1 subunit 99.9 4.4E-19 1.5E-23 208.3 44.0 357 26-388 259-671 (861)
7 2bpt_A Importin beta-1 subunit 99.9 8.4E-20 2.9E-24 214.4 35.9 375 25-401 404-835 (861)
8 1qgr_A Protein (importin beta 99.9 1.6E-18 5.6E-23 203.9 42.5 338 25-367 251-702 (876)
9 1u6g_C TIP120 protein, CAND1; 99.9 1.1E-18 3.6E-23 214.8 40.7 399 23-424 246-724 (1230)
10 1u6g_C TIP120 protein, CAND1; 99.9 1.5E-19 5.1E-24 222.4 31.4 392 27-422 128-599 (1230)
11 1qgr_A Protein (importin beta 99.8 1.5E-18 5.2E-23 204.1 37.6 350 29-386 87-480 (876)
12 1ibr_B P95, importin beta-1 su 99.7 4.1E-15 1.4E-19 161.5 34.7 342 42-389 47-441 (462)
13 2vgl_B AP-2 complex subunit be 99.7 1.6E-14 5.5E-19 165.1 35.6 348 27-398 116-471 (591)
14 2jdq_A Importin alpha-1 subuni 99.7 1.7E-15 5.8E-20 164.4 25.0 353 33-385 21-390 (450)
15 2jdq_A Importin alpha-1 subuni 99.7 1E-15 3.5E-20 166.2 19.9 319 32-350 64-391 (450)
16 1wa5_B Importin alpha subunit; 99.7 1.5E-15 5.2E-20 170.3 19.3 318 31-349 129-457 (530)
17 1wa5_B Importin alpha subunit; 99.6 4.1E-15 1.4E-19 166.8 21.6 356 30-385 85-457 (530)
18 2qk2_A LP04448P; mini spindles 99.6 6.5E-15 2.2E-19 148.8 20.4 193 30-270 13-209 (242)
19 4b8j_A Importin subunit alpha- 99.6 1.3E-14 4.4E-19 162.4 23.8 319 31-349 116-443 (528)
20 2vgl_B AP-2 complex subunit be 99.6 9.2E-14 3.2E-18 158.8 29.7 351 30-403 47-402 (591)
21 2iw3_A Elongation factor 3A; a 99.6 2.5E-14 8.7E-19 170.3 24.4 250 32-290 54-356 (986)
22 4b8j_A Importin subunit alpha- 99.6 2.4E-14 8.1E-19 160.2 21.3 319 31-350 73-401 (528)
23 2qk2_A LP04448P; mini spindles 99.6 3.6E-14 1.2E-18 143.3 17.8 206 144-359 7-217 (242)
24 1w63_A Adapter-related protein 99.6 9.3E-13 3.2E-17 151.5 31.4 368 27-425 137-544 (618)
25 2qk1_A Protein STU2; STU2P, XM 99.6 2.2E-13 7.4E-18 139.5 21.3 215 144-361 8-234 (249)
26 1oyz_A Hypothetical protein YI 99.5 4.8E-13 1.6E-17 137.2 21.7 255 31-346 22-279 (280)
27 2qk1_A Protein STU2; STU2P, XM 99.5 3.4E-13 1.2E-17 138.1 18.0 197 31-270 15-224 (249)
28 1wa5_C Importin alpha RE-expor 99.5 4.8E-12 1.6E-16 152.3 30.7 351 28-386 81-526 (960)
29 2vgl_A Adaptor protein complex 99.5 1.6E-11 5.4E-16 141.4 32.6 316 27-367 141-489 (621)
30 2z6h_A Catenin beta-1, beta-ca 99.5 8E-11 2.7E-15 135.4 35.2 352 29-386 11-383 (644)
31 1w63_A Adapter-related protein 99.4 1.1E-11 3.6E-16 142.7 25.9 344 31-402 69-433 (618)
32 2z6g_A B-catenin; FULL-length, 99.4 2.6E-10 9E-15 134.5 37.6 347 31-385 149-518 (780)
33 1oyz_A Hypothetical protein YI 99.4 4.6E-11 1.6E-15 122.4 27.2 224 75-349 25-250 (280)
34 1jdh_A Beta-catenin; beta-cate 99.4 8.1E-11 2.8E-15 130.4 31.2 336 29-370 14-411 (529)
35 2vgl_A Adaptor protein complex 99.4 1.5E-11 5E-16 141.7 24.1 353 31-402 73-452 (621)
36 3ul1_B Importin subunit alpha- 99.4 2E-11 6.9E-16 136.9 23.8 358 33-402 101-475 (510)
37 2z6g_A B-catenin; FULL-length, 99.4 3.1E-10 1.1E-14 133.9 34.7 379 34-425 117-522 (780)
38 3ltm_A Alpha-REP4; protein eng 99.4 1.2E-11 4.1E-16 121.4 17.0 184 31-265 18-202 (211)
39 3ltj_A Alpharep-4; protein eng 99.4 2.1E-11 7.2E-16 118.7 18.4 186 28-264 10-196 (201)
40 2z6h_A Catenin beta-1, beta-ca 99.4 2.2E-10 7.5E-15 131.8 29.2 330 32-367 56-405 (644)
41 3tpo_A Importin subunit alpha- 99.3 9.1E-11 3.1E-15 132.0 25.3 317 32-348 119-448 (529)
42 3ibv_A Exportin-T; karyopherin 99.3 1E-10 3.5E-15 141.2 27.3 350 43-401 101-588 (980)
43 2x19_B Importin-13; nuclear tr 99.3 8.1E-09 2.8E-13 123.6 43.3 362 28-400 486-908 (963)
44 2x19_B Importin-13; nuclear tr 99.3 3.4E-10 1.2E-14 135.5 30.7 370 44-423 115-601 (963)
45 3ltm_A Alpha-REP4; protein eng 99.3 5.6E-11 1.9E-15 116.5 19.3 187 113-350 18-204 (211)
46 3ul1_B Importin subunit alpha- 99.3 1.2E-09 4.2E-14 122.4 32.2 385 75-480 59-476 (510)
47 3tpo_A Importin subunit alpha- 99.3 1.2E-09 4.1E-14 122.9 30.8 347 74-424 77-452 (529)
48 3m1i_C Exportin-1; heat repeat 99.3 8.5E-10 2.9E-14 134.0 31.4 333 45-388 113-572 (1049)
49 2x1g_F Cadmus; transport prote 99.3 2.5E-09 8.7E-14 128.4 35.0 351 28-389 344-764 (971)
50 3now_A UNC-45 protein, SD10334 99.3 3.4E-10 1.2E-14 133.1 26.1 382 35-420 333-781 (810)
51 2x1g_F Cadmus; transport prote 99.3 2.4E-09 8.3E-14 128.5 33.8 313 27-348 500-857 (971)
52 3now_A UNC-45 protein, SD10334 99.3 4.1E-09 1.4E-13 123.9 34.7 412 14-435 266-748 (810)
53 4hxt_A De novo protein OR329; 99.3 2.8E-10 9.5E-15 113.1 20.3 237 33-269 3-244 (252)
54 1jdh_A Beta-catenin; beta-cate 99.3 1.9E-09 6.5E-14 119.4 29.0 309 32-346 101-423 (529)
55 3ltj_A Alpharep-4; protein eng 99.3 2.1E-10 7.2E-15 111.5 18.8 186 112-348 12-197 (201)
56 4hxt_A De novo protein OR329; 99.2 3E-10 1E-14 112.9 15.1 235 115-349 3-241 (252)
57 1wa5_C Importin alpha RE-expor 99.1 2.5E-08 8.7E-13 119.9 31.4 325 29-368 396-773 (960)
58 4db8_A Armadillo-repeat protei 99.1 4.7E-10 1.6E-14 112.4 13.3 233 32-264 12-249 (252)
59 4db8_A Armadillo-repeat protei 99.1 3.1E-09 1.1E-13 106.3 19.0 235 74-349 13-251 (252)
60 4hat_C Exportin-1; heat repeat 99.1 1.8E-07 6.1E-12 113.4 34.9 347 31-387 137-571 (1023)
61 4db6_A Armadillo repeat protei 99.0 4.1E-09 1.4E-13 102.6 15.2 194 31-224 11-208 (210)
62 1xm9_A Plakophilin 1; armadill 99.0 3.8E-08 1.3E-12 108.9 24.3 313 33-351 3-408 (457)
63 3l6x_A Catenin delta-1; cateni 99.0 3.4E-07 1.2E-11 104.3 31.4 317 30-350 46-433 (584)
64 4ffb_C Protein STU2; tubulin f 98.9 1.2E-08 4.2E-13 105.1 16.4 188 37-270 14-216 (278)
65 3ibv_A Exportin-T; karyopherin 98.9 8.8E-07 3E-11 107.0 33.2 337 27-366 327-752 (980)
66 3a6p_A Exportin-5; exportin-5, 98.9 9.9E-07 3.4E-11 108.8 31.8 352 44-401 108-635 (1204)
67 2iw3_A Elongation factor 3A; a 98.8 1.6E-07 5.3E-12 112.3 22.6 265 86-366 28-300 (986)
68 4ffb_C Protein STU2; tubulin f 98.8 3.1E-08 1E-12 102.1 13.2 191 116-348 12-211 (278)
69 4db6_A Armadillo repeat protei 98.8 1.4E-07 4.7E-12 91.7 16.5 193 72-264 11-207 (210)
70 3m1i_C Exportin-1; heat repeat 98.8 7.2E-05 2.5E-09 90.8 42.9 296 26-326 338-694 (1049)
71 3nmz_A APC variant protein; pr 98.7 5.3E-07 1.8E-11 100.0 20.5 313 32-350 70-451 (458)
72 2of3_A ZYG-9; multifunctional 98.7 2.1E-06 7.1E-11 88.4 23.0 189 33-270 47-240 (266)
73 3gjx_A Exportin-1; transport, 98.6 5.9E-06 2E-10 100.3 28.0 331 44-384 124-594 (1073)
74 1xm9_A Plakophilin 1; armadill 98.6 1.5E-06 5.1E-11 96.0 21.0 310 31-349 43-449 (457)
75 2of3_A ZYG-9; multifunctional 98.6 1.4E-06 4.8E-11 89.7 16.8 198 163-375 54-260 (266)
76 1xqr_A HSPBP1 protein; armadil 98.6 2.2E-06 7.4E-11 89.8 18.5 189 32-223 81-285 (296)
77 3l6x_A Catenin delta-1; cateni 98.5 2.6E-05 8.9E-10 88.8 27.6 312 32-349 90-476 (584)
78 4hat_C Exportin-1; heat repeat 98.5 3.6E-05 1.2E-09 93.4 30.0 354 34-389 346-793 (1023)
79 2db0_A 253AA long hypothetical 98.4 2.8E-05 9.4E-10 75.1 20.2 209 150-375 27-236 (253)
80 3nmz_A APC variant protein; pr 98.4 1E-05 3.6E-10 89.6 19.3 253 133-387 167-452 (458)
81 3tjz_B Coatomer subunit gamma; 98.4 2.3E-06 7.7E-11 91.8 13.4 282 31-348 67-352 (355)
82 3opb_A SWI5-dependent HO expre 98.3 0.00025 8.5E-09 82.6 29.4 343 35-386 299-729 (778)
83 3nmw_A APC variant protein; AR 98.3 1.3E-05 4.6E-10 85.8 17.5 225 126-350 96-335 (354)
84 1te4_A Conserved protein MTH18 98.3 8.2E-08 2.8E-12 87.5 -0.9 121 29-181 9-130 (131)
85 3nmw_A APC variant protein; AR 98.2 2E-05 6.8E-10 84.5 16.2 234 33-267 74-335 (354)
86 1xqr_A HSPBP1 protein; armadil 98.2 3.9E-05 1.3E-09 80.2 18.0 232 33-264 29-285 (296)
87 3b2a_A TON_1937, putative unch 98.2 0.00053 1.8E-08 68.7 24.0 222 33-266 34-261 (265)
88 3opb_A SWI5-dependent HO expre 98.1 0.00028 9.5E-09 82.2 23.7 317 30-349 332-728 (778)
89 3gjx_A Exportin-1; transport, 98.1 0.0017 5.7E-08 78.9 31.0 307 19-348 553-903 (1073)
90 1lrv_A LRV, leucine-rich repea 98.1 1.4E-06 4.9E-11 88.7 3.5 184 39-343 57-240 (244)
91 4ady_A RPN2, 26S proteasome re 98.0 0.00071 2.4E-08 80.4 26.2 263 46-348 451-718 (963)
92 3b2a_A TON_1937, putative unch 98.0 0.0013 4.3E-08 66.0 23.6 222 115-347 34-259 (265)
93 4ady_A RPN2, 26S proteasome re 98.0 0.0019 6.7E-08 76.7 28.6 300 19-366 379-698 (963)
94 2db0_A 253AA long hypothetical 98.0 0.0016 5.3E-08 63.1 22.3 216 27-264 27-244 (253)
95 3oc3_A Helicase MOT1, MOT1; re 97.9 0.00011 3.8E-09 81.5 15.5 237 33-301 175-429 (800)
96 1te4_A Conserved protein MTH18 97.8 7.2E-06 2.5E-10 74.5 3.3 117 73-221 12-129 (131)
97 3tjz_B Coatomer subunit gamma; 97.8 2.5E-05 8.4E-10 83.7 7.3 227 10-258 118-345 (355)
98 3oc3_A Helicase MOT1, MOT1; re 97.7 0.00017 5.9E-09 80.1 12.1 231 109-362 170-416 (800)
99 3a6p_A Exportin-5; exportin-5, 97.6 0.018 6.1E-07 71.0 29.0 327 33-367 250-682 (1204)
100 1lrv_A LRV, leucine-rich repea 97.5 8.3E-05 2.8E-09 75.6 5.5 40 37-93 79-118 (244)
101 3l9t_A Putative uncharacterize 97.4 0.0058 2E-07 61.4 17.6 137 30-184 69-207 (240)
102 1vsy_5 Proteasome activator BL 97.3 0.0011 3.8E-08 79.9 13.0 206 131-348 734-965 (997)
103 1vsy_5 Proteasome activator BL 97.3 0.00037 1.3E-08 84.1 8.5 321 27-365 503-892 (997)
104 3grl_A General vesicular trans 97.2 0.26 8.8E-06 56.3 30.6 303 45-352 35-397 (651)
105 3l9t_A Putative uncharacterize 96.8 0.03 1E-06 56.3 16.2 139 109-264 66-205 (240)
106 3tt9_A Plakophilin-2; cell adh 96.7 0.0055 1.9E-07 61.7 10.0 189 197-388 9-232 (233)
107 3tt9_A Plakophilin-2; cell adh 96.5 0.025 8.4E-07 56.9 13.1 149 32-183 8-179 (233)
108 3u0r_A Apoptosis inhibitor 5; 96.5 0.23 8E-06 54.6 21.4 166 148-334 23-191 (507)
109 3gs3_A Symplekin, LD45768P; he 96.4 0.2 6.9E-06 51.0 19.5 114 109-226 48-174 (257)
110 4gmo_A Putative uncharacterize 96.1 0.023 7.7E-07 65.9 11.9 151 33-184 35-214 (684)
111 3gs3_A Symplekin, LD45768P; he 95.5 2.6 8.8E-05 42.8 26.2 194 130-359 31-254 (257)
112 3u0r_A Apoptosis inhibitor 5; 95.2 4.7 0.00016 44.4 27.3 262 75-366 31-322 (507)
113 3o2t_A Symplekin; heat repeat, 95.1 0.36 1.2E-05 52.0 15.5 114 109-226 58-184 (386)
114 3o2t_A Symplekin; heat repeat, 95.1 4.5 0.00016 43.4 24.6 222 194-428 61-328 (386)
115 4gmo_A Putative uncharacterize 94.8 0.55 1.9E-05 54.2 17.2 73 113-186 34-107 (684)
116 1upk_A MO25 protein; transfera 94.2 6.6 0.00022 41.3 22.5 230 113-386 77-333 (341)
117 1w9c_A CRM1 protein, exportin 93.9 2.3 7.8E-05 44.5 17.8 216 212-435 45-311 (321)
118 3grl_A General vesicular trans 93.7 0.97 3.3E-05 51.6 15.6 75 279-353 122-199 (651)
119 4atg_A TAF6; transcription, TF 92.1 4.5 0.00015 39.3 15.7 150 147-313 7-167 (196)
120 4atg_A TAF6; transcription, TF 91.8 2.5 8.5E-05 41.1 13.5 141 64-221 6-158 (196)
121 3eg5_B Protein diaphanous homo 89.7 3.2 0.00011 44.5 13.4 175 320-532 162-344 (383)
122 1lsh_A Lipovitellin (LV-1N, LV 89.3 19 0.00064 43.6 21.3 168 156-349 392-576 (1056)
123 2bnx_A Diaphanous protein homo 88.8 3.9 0.00013 43.8 13.2 175 320-532 100-282 (386)
124 1vsy_4 Proteasome activator BL 83.9 73 0.0025 37.3 27.7 157 30-186 230-414 (799)
125 3ldz_A STAM-1, signal transduc 83.3 7.8 0.00027 35.4 10.5 76 115-190 43-120 (140)
126 1vsy_4 Proteasome activator BL 81.6 88 0.003 36.6 30.4 110 27-141 334-453 (799)
127 1x5b_A Signal transducing adap 79.1 6.1 0.00021 37.1 8.3 76 114-189 52-130 (163)
128 3ebb_A Phospholipase A2-activa 77.6 68 0.0023 33.0 17.1 152 280-433 104-275 (304)
129 3jxy_A Alkylpurine DNA glycosy 77.3 31 0.001 33.9 13.3 211 140-389 12-224 (232)
130 1upk_A MO25 protein; transfera 77.0 76 0.0026 33.2 20.6 193 28-227 74-285 (341)
131 2npp_B PP2A, B subunit, serine 75.4 29 0.00098 37.9 13.4 226 27-267 156-400 (449)
132 1mhq_A ADP-ribosylation factor 74.0 15 0.00052 33.8 9.4 73 116-188 40-120 (148)
133 2f31_A Diaphanous protein homo 73.8 11 0.00039 37.1 9.1 96 319-435 95-193 (233)
134 1lsh_A Lipovitellin (LV-1N, LV 73.8 1.6E+02 0.0055 35.4 25.8 187 235-434 389-590 (1056)
135 3s4w_B Protein FACD2, fanconi 72.0 2E+02 0.0067 35.7 22.2 115 229-348 392-506 (1323)
136 3g2s_A C-terminal fragment of 70.9 23 0.00078 32.7 9.8 76 113-188 47-130 (149)
137 1w9c_A CRM1 protein, exportin 69.8 1.1E+02 0.0037 31.8 21.7 158 151-308 69-248 (321)
138 1elk_A Target of MYB1; superhe 67.2 25 0.00086 32.6 9.3 75 115-189 54-135 (157)
139 1dvp_A HRS, hepatocyte growth 66.4 28 0.00097 33.9 10.0 77 114-190 42-121 (220)
140 1vdy_A Hypothetical protein (R 66.0 10 0.00035 34.8 6.2 72 194-265 47-129 (140)
141 3eg5_B Protein diaphanous homo 60.9 47 0.0016 35.3 11.2 129 216-348 99-245 (383)
142 3jxy_A Alkylpurine DNA glycosy 59.2 72 0.0025 31.2 11.5 17 38-54 33-49 (232)
143 1juq_A ADP-ribosylation factor 58.2 40 0.0014 31.7 9.0 75 114-188 50-132 (171)
144 2fv2_A RCD1 required for cell 58.1 46 0.0016 33.7 9.7 146 210-389 116-268 (268)
145 3g2s_A C-terminal fragment of 57.5 84 0.0029 28.8 10.9 71 278-348 47-125 (149)
146 3fga_B Serine/threonine-protei 57.0 2.1E+02 0.0071 30.7 18.6 214 3-231 103-372 (403)
147 3ldz_A STAM-1, signal transduc 55.6 42 0.0014 30.4 8.4 72 277-348 40-113 (140)
148 2b6c_A Hypothetical protein EF 54.3 95 0.0032 30.0 11.4 178 144-349 10-188 (220)
149 1mhq_A ADP-ribosylation factor 53.5 1.3E+02 0.0045 27.3 11.6 71 278-348 37-115 (148)
150 2b6c_A Hypothetical protein EF 53.4 1.5E+02 0.0051 28.6 12.7 91 113-218 123-213 (220)
151 1vdy_A Hypothetical protein (R 51.3 26 0.00088 32.1 6.1 39 318-356 47-86 (140)
152 1x5b_A Signal transducing adap 49.0 67 0.0023 29.9 8.9 72 277-348 50-124 (163)
153 1juq_A ADP-ribosylation factor 48.1 1.5E+02 0.0051 27.7 11.2 71 278-348 49-127 (171)
154 3zyq_A Hepatocyte growth facto 44.6 62 0.0021 31.7 8.3 77 112-188 43-122 (226)
155 3dad_A FH1/FH2 domain-containi 42.5 3.2E+02 0.011 28.5 14.5 110 36-148 164-292 (339)
156 4flb_A Regulation of nuclear P 40.5 1.4E+02 0.0047 26.3 9.3 89 235-333 6-98 (132)
157 2x6h_A GH13170P, VPS34, phosph 40.2 37 0.0013 39.1 6.6 77 72-161 76-153 (696)
158 3ut4_A CTHE_2751, putative unc 35.4 1.1E+02 0.0038 27.7 7.6 104 139-264 19-128 (134)
159 1elk_A Target of MYB1; superhe 32.4 1.6E+02 0.0056 26.9 8.6 72 277-348 51-129 (157)
160 3rru_A TOM1L1 protein; structu 30.6 1.4E+02 0.0049 27.3 7.8 75 116-190 55-136 (152)
161 2bnx_A Diaphanous protein homo 29.8 5E+02 0.017 27.2 13.0 32 279-310 100-131 (386)
162 2p6v_A Transcription initiatio 28.7 2.2E+02 0.0075 24.9 7.9 81 152-255 21-103 (114)
163 1dvp_A HRS, hepatocyte growth 27.4 4.1E+02 0.014 25.4 11.6 86 181-270 28-119 (220)
164 3twe_A Alpha4H; unknown functi 26.5 61 0.0021 20.4 2.9 12 424-435 15-26 (27)
165 3dad_A FH1/FH2 domain-containi 26.1 5.7E+02 0.02 26.6 14.4 148 37-186 123-288 (339)
166 3ls8_A Phosphatidylinositol 3- 23.4 71 0.0024 36.2 5.0 33 126-161 107-139 (614)
167 3d9j_A RNA-binding protein 16; 22.8 1.3E+02 0.0045 27.2 5.9 93 163-259 13-112 (145)
168 1sz9_A PCF11 protein; RNA poly 20.9 4.6E+02 0.016 23.5 9.7 101 149-258 5-106 (144)
169 3ebb_A Phospholipase A2-activa 20.0 6.9E+02 0.024 25.3 14.6 114 31-144 146-264 (304)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.94 E-value=3.4e-24 Score=254.16 Aligned_cols=368 Identities=16% Similarity=0.179 Sum_probs=306.6
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
.....|.+.++.+++|+++.||..+++++..|++.- ....|+++++.|..+++++++.+|.+| ..|..++++....
T Consensus 86 ~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 86 GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG---ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc---CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 345678899999999999999999999999998753 234689999999999999999999999 8888888876542
Q ss_pred cc----hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 005891 107 SD----QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (671)
Q Consensus 107 ~~----~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~l 182 (671)
.. ...++.++|.+.+.+.+.++.||..++.++..+....+..+..+++.+++.+++.+.|++.+||+.|+.+|..+
T Consensus 163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 11 12378899999999999999999999999998887777778899999999999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--cCcCcccchHhHHHHHhhhhc-----------C-
Q 005891 183 LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPYYADILGAILPCIS-----------D- 248 (671)
Q Consensus 183 l~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l--~~~~l~pflp~LLp~LL~~Ls-----------d- 248 (671)
.+..+.....+++.+++.++..+.+.++.+|..|++++..+++. ....+.||+++++|.+++.|. |
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred HHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 98665432345788999999999999999999999977777653 223357899999999999983 3
Q ss_pred ----------CcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh
Q 005891 249 ----------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 318 (671)
Q Consensus 249 ----------~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l 318 (671)
.+..+|..|.++.+.+.+..++ .-+..+++.+.+.+.+++|..|.+|+.+++.+.+++++.+.+++
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l 398 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1234799999998888877653 23578889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh---
Q 005891 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--- 389 (671)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~------~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~--- 389 (671)
+.++|.+++.++|+++.||..++|+++++++ ...|+..++..|++.+.++..-++..+...+.++|...+.
T Consensus 399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~ 478 (852)
T 4fdd_A 399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 478 (852)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH
Confidence 9999999999999999999999999999984 3578999999999999777666677767777888766544
Q ss_pred ---HHHHHHHHHhhcc
Q 005891 390 ---ERVYRELSTILEG 402 (671)
Q Consensus 390 ---E~Iy~~la~iL~~ 402 (671)
+.+...|...+.+
T Consensus 479 ~~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 479 PYLAYILDTLVFAFSK 494 (852)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 2445555555543
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.92 E-value=4.2e-23 Score=231.57 Aligned_cols=309 Identities=18% Similarity=0.213 Sum_probs=261.7
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
.+.+.++|.+...+.|++|+||++|++++..++...+.+. +.+++++.+.+++.|+++.||.+| ..+.++++....+
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 4567789999999999999999999999999987655443 356889999999999999999988 7788877744321
Q ss_pred cc-hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 107 SD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 107 ~~-~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
.. ...++.++|.+.+.+.+.+|.||..++.++..+....+.+. ..+.+++.+..++.|++++||.++.++++.+.+.
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 10 13478999999999999999999999999998877655543 3567778888899999999999999999999987
Q ss_pred hhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHH
Q 005891 186 IKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (671)
Q Consensus 186 I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (671)
++.. ...+.++|.+.....+++|.+|..++.++..+.+..|..+ |.+.++|.+++.+.|.+.++|..|..+...+.
T Consensus 394 ~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 394 IGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp SCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 7521 1247799999999999999999999999999998777664 46899999999999999999999999999998
Q ss_pred HhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005891 266 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (671)
Q Consensus 266 ~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa 345 (671)
+.++. .+.++.+++.+...+.++++.+|.+++.+++.+.+.++.+. |.+.++|.+++.++|++++||..++++|+
T Consensus 470 ~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 544 (588)
T 1b3u_A 470 EKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544 (588)
T ss_dssp HHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHhCc---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHH
Confidence 87754 23357888988888888899999999999999999887764 68899999999999999999999999999
Q ss_pred HHhh
Q 005891 346 CIAK 349 (671)
Q Consensus 346 ~Is~ 349 (671)
.++.
T Consensus 545 ~l~~ 548 (588)
T 1b3u_A 545 KIGP 548 (588)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 9995
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.92 E-value=4e-23 Score=231.79 Aligned_cols=377 Identities=14% Similarity=0.112 Sum_probs=292.2
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
+.+.++|.+...+.|+++.||.+|++++..+++..+++. +.++++|.+..++.|.+..||.+| ..|..+.+..-.
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-- 236 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-- 236 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--
Confidence 456788888889999999999999999999998765543 467899999999999999999998 777777664321
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
....+.++|.+.+.+.+.+|.+|..++..+..+....+.+. +.+.+++.+.+++.|++++||..|..+|+.+.+.++
T Consensus 237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 23457899999999999999999999999998876544332 467778888899999999999999999999998775
Q ss_pred cCCC--CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHH
Q 005891 188 NSPS--VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (671)
Q Consensus 188 ~~~~--~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (671)
.... ...+.++|.+...++++++.+|..++.++..+....|... +.+.++|.++..+.|.++++|..|..+...+.
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 3110 1267899999999999999999999999999888777553 47889999999999999999999998888887
Q ss_pred HhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005891 266 AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (671)
Q Consensus 266 ~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa 345 (671)
+.++. ....+.+++.+.+.+.+.+|.+|.+++.++..+....+.+. +.+.++|.+++.|.|+++.||..++..++
T Consensus 392 ~~~~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 392 EVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLK 466 (588)
T ss_dssp HHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HhcCH---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 76542 11136788889888999999999999999999998877764 35789999999999999999999999999
Q ss_pred HHhh---ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChH----HHHHHHHHhhcccCChhHHHHHHHHHHH
Q 005891 346 CIAK---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE----RVYRELSTILEGEADLDFACTMVQALNL 418 (671)
Q Consensus 346 ~Is~---~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E----~Iy~~la~iL~~~~dl~F~~~mVq~Ln~ 418 (671)
.+.. ++.++..++..|.+++.+........+-..+..++..++.+ .++..+...+. +.+.+.-...+.+|..
T Consensus 467 ~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~ 545 (588)
T 1b3u_A 467 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG-DPVANVRFNVAKSLQK 545 (588)
T ss_dssp HHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-CSCHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC-CCCchHHHHHHHHHHH
Confidence 9884 23355677777777665554433333344666666666554 23333433332 2333333355555555
Q ss_pred Hh
Q 005891 419 IL 420 (671)
Q Consensus 419 iL 420 (671)
+.
T Consensus 546 l~ 547 (588)
T 1b3u_A 546 IG 547 (588)
T ss_dssp HG
T ss_pred HH
Confidence 54
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.91 E-value=3e-21 Score=228.81 Aligned_cols=432 Identities=17% Similarity=0.204 Sum_probs=320.9
Q ss_pred hHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhh-----------cC--------
Q 005891 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLS-----------AD-------- 84 (671)
Q Consensus 26 ~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv--~~~~il~~f~eIf~~L~kL~-----------~D-------- 84 (671)
+.+|++.+++.++.+++|++..||..|++.+.++++. ++....++...++|.+.+.+ +|
T Consensus 250 ~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 4578889999999999999999999999999998753 23334567889999998877 45
Q ss_pred ---CchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHH
Q 005891 85 ---SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (671)
Q Consensus 85 ---~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gL 160 (671)
.+.+||.+| ..|+++.+..- +..++.++|.+.+.+.+.+|.+|..++.++..+....+..+..|++.+++.+
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~----~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l 405 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYR----DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 405 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 345678777 78888877432 3457889999999999999999999999999999988888889999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHH
Q 005891 161 FNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADIL 239 (671)
Q Consensus 161 f~lL~D~~~eVR~~a~~~L~~ll~~I~~~~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LL 239 (671)
++.+.|+++.||.+|+.+++.+.+.++... ...+..+++.++..+.++++.+|..|+.++..+++..+..+.||+|.++
T Consensus 406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll 485 (852)
T 4fdd_A 406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYIL 485 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHH
Confidence 999999999999999999999998876432 3458899999999999999999999999999999988888999999999
Q ss_pred HHHhhhhcCCcHhHHHHHHHHHHHHHHhcC------------------------CCCC------------------CC--
Q 005891 240 GAILPCISDKEEKIRVVARETNEELRAIKA------------------------DPAD------------------GF-- 275 (671)
Q Consensus 240 p~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~------------------------~~~~------------------~~-- 275 (671)
+.++..+...+......+.++...+.+..+ +... .+
T Consensus 486 ~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~ 565 (852)
T 4fdd_A 486 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP 565 (852)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHH
Confidence 999999875544433333333333322111 1000 00
Q ss_pred ChHhHHH----HHHHh-------------cCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCCCCHHH
Q 005891 276 DVGPILS----IATRQ-------------LSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEV 336 (671)
Q Consensus 276 dl~~il~----~L~~~-------------L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eV 336 (671)
.++.+++ .+... +..+....|.+++..+..+.++.+.++.+|+ +.+++.++.++.|+++.|
T Consensus 566 ~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~v 645 (852)
T 4fdd_A 566 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 645 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhH
Confidence 1123222 23222 1222455799999999999999999999997 899999999999999999
Q ss_pred HHHHHHHHHHHhh-----ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh------HHHHHHHHHhhccc-C
Q 005891 337 VLLVLEVHACIAK-----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGE-A 404 (671)
Q Consensus 337 ~~~~l~lLa~Is~-----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~------E~Iy~~la~iL~~~-~ 404 (671)
|..+.++++.++. -.+|+..++..+.+.+..+..-...-+...+-.+|..++. +.+...+-.++... .
T Consensus 646 r~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~ 725 (852)
T 4fdd_A 646 RQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT 725 (852)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999983 2467788888888888554332222223345566665543 47888888888652 2
Q ss_pred ChhHHHHHHHHHHHHhccchh-----HHH----HHHHHHhccCCcchHHHHHHHHHhhccChHHHH
Q 005891 405 DLDFACTMVQALNLILLTSSE-----LSE----LRDLLKKSLVNPAGKDLFVSLYASWCHSPMAII 461 (671)
Q Consensus 405 dl~F~~~mVq~Ln~iLLTs~E-----l~~----lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~l 461 (671)
.-....+.+.++-.+...-++ +.. +-+.|++.-++.+....|.+|+.-=.+||-+++
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~ 791 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI 791 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTG
T ss_pred CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHH
Confidence 334555666666666665433 333 234554422455677888888777777887543
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.88 E-value=8.9e-21 Score=206.24 Aligned_cols=331 Identities=12% Similarity=0.038 Sum_probs=265.6
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCC--chHHHHHH-HHHHHHHHHhhc
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~--d~~Vr~gA-~~LdrllKdIv~ 105 (671)
..+.|...++..+.|++..+ ..+++++..|++..... ..|+++++.|...+.|+ ++.+|.+| ..|..++++...
T Consensus 87 ~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~ 163 (462)
T 1ibr_B 87 ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163 (462)
T ss_dssp HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCc
Confidence 34567788899999999999 99999999998753221 25789999999999888 89999999 888888886533
Q ss_pred ccchhhhhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhHHh--chHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 005891 106 ESDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~~~--np~vR~~alswL~~L~~ip~~~li~--~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ 181 (671)
+.-....+.++|.+...+.+. ++.||..++..+..+....+..+.. +.+.+++.+...+.|++.+||..++++|..
T Consensus 164 ~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp GGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 222334678999999999987 8999999999998876543322211 223357777888999999999999999999
Q ss_pred HHHHhhcCCCCChH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc---------------------CcCcccchHhHH
Q 005891 182 FLQEIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAITWINEFVKLG---------------------GDQLVPYYADIL 239 (671)
Q Consensus 182 ll~~I~~~~~~d~~-~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~---------------------~~~l~pflp~LL 239 (671)
+.+..+......++ .+++.++..+.+.++.+|..|++.+..+++.. ...+.+|++.++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (462)
T 1ibr_B 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (462)
T ss_dssp HHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhcc
Confidence 99877643334577 89999999999999999999999777777642 011234679999
Q ss_pred HHHhhhhcCC-------cHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-
Q 005891 240 GAILPCISDK-------EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR- 311 (671)
Q Consensus 240 p~LL~~Lsd~-------~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p- 311 (671)
|.+++.|.+. +..+|..|..+...+.+..++ .-+..+++.+.+.+.+.+|..|.+|+..++.+.+++.
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~ 399 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence 9999988643 347999999999998888753 2357888999999999999999999999999999886
Q ss_pred hhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHhhcc
Q 005891 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFR 366 (671)
Q Consensus 312 ~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-------~~~~F~~fm~~LL~lf~ 366 (671)
+.+.++++.++|.+++.|+|+.+.||..++|+++++++ ..+|+.+++..|++.++
T Consensus 400 ~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 56778999999999999999999999999999999994 24789999999987653
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.88 E-value=4.4e-19 Score=208.30 Aligned_cols=357 Identities=11% Similarity=0.140 Sum_probs=281.7
Q ss_pred hHHhHh-hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-----------------chhhhhHHHHHHHHHHhhcC---
Q 005891 26 SETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-----------------GDFIIFFNQIFDALCKLSAD--- 84 (671)
Q Consensus 26 ~~~yl~-~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~-----------------~~il~~f~eIf~~L~kL~~D--- 84 (671)
+.+|+. .+++.++.++.|.+.+||..|++.+..+++... .....++..+++.+...+.+
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~ 338 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNE 338 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 457788 899999999999999999999999999987532 11235568899999887764
Q ss_pred ----CchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhHHhchHHHHH
Q 005891 85 ----SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLD 158 (671)
Q Consensus 85 ----~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~-~~li~~Lp~fL~ 158 (671)
.+.++|.+| ..|+.+..... ...++.++|.+.+.+.+.+|.+|..++..+..+....+ ..+.+|++.+++
T Consensus 339 d~~d~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~ 414 (861)
T 2bpt_A 339 DPEDDDWNVSMSAGACLQLFAQNCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALP 414 (861)
T ss_dssp C-CCCCCHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHHHHHcc----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345888877 77888776443 34578899999999999999999999999999988765 668899999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhhcC--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC----cCcc
Q 005891 159 GLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG----DQLV 232 (671)
Q Consensus 159 gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~--~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~----~~l~ 232 (671)
.|++.+.|+++.||.+++.+++.+.+.++.. +...++.+++.++..+.+. +.+|..|+..+..+++..+ ..+.
T Consensus 415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~ 493 (861)
T 2bpt_A 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY 493 (861)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhH
Confidence 9999999999999999999999999988642 2345899999999999876 8999999999999988754 5678
Q ss_pred cchHhHHHHHhhhhc--CCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCC---------------CcHHH
Q 005891 233 PYYADILGAILPCIS--DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS---------------EWEAT 295 (671)
Q Consensus 233 pflp~LLp~LL~~Ls--d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~---------------~~~~t 295 (671)
||++.+++.+++.+. |.++++|..|.++...+.+..++. ..-.+..+++.+.+.+.+ .....
T Consensus 494 ~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 572 (861)
T 2bpt_A 494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQEL 572 (861)
T ss_dssp GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHH
Confidence 999999999999998 455899999999999888876531 001134555555554431 13457
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhh--c---cchHHHHHHHHHhhccccc
Q 005891 296 RIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-EVVLLVLEVHACIAK--D---LQHFRQLVVFLVHNFRVDN 369 (671)
Q Consensus 296 RiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~-eV~~~~l~lLa~Is~--~---~~~F~~fm~~LL~lf~~d~ 369 (671)
|..++..+..+....+..+.+|.+.++|.++..+++.++ .|+..++++++.++. + .+|+..++..+++.+.++.
T Consensus 573 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~ 652 (861)
T 2bpt_A 573 QSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVD 652 (861)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc
Confidence 889999999999999999999999999999999998877 899999999888873 1 3577788888888875443
Q ss_pred hhhhhHHHHHHHHHhccCC
Q 005891 370 SLLEKRGALIIRRLCVLLD 388 (671)
Q Consensus 370 ~lLe~Rg~~IIR~Lc~~L~ 388 (671)
.-....+--.+-.++..++
T Consensus 653 ~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 653 SPVSITAVGFIADISNSLE 671 (861)
T ss_dssp SHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3222222334555555554
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.87 E-value=8.4e-20 Score=214.40 Aligned_cols=375 Identities=12% Similarity=0.090 Sum_probs=293.5
Q ss_pred hhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchh--hhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHH
Q 005891 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK 101 (671)
Q Consensus 25 ~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i--l~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllK 101 (671)
.+.+|++.++|.++..+.|+++.||..|+.++..+++.....+ ..+++.+++.+.+.+.|. +.||.+| ..+..+++
T Consensus 404 ~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999998766543 467899999999999887 8999888 78888887
Q ss_pred Hhh---cccchhhhhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCC----------
Q 005891 102 DIV---TESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD---------- 166 (671)
Q Consensus 102 dIv---~e~~~f~L~~fIP~L~e~i~~--~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D---------- 166 (671)
..- .+.-...++.++|.|...+.. .++.+|..++..+..+....+.+..+|++.+++.+++.+.+
T Consensus 483 ~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp HHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred hcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 543 111112367788888888874 44899999999999999888888888888888888876653
Q ss_pred -----CChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhcCcCcccchHhHHH
Q 005891 167 -----SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILG 240 (671)
Q Consensus 167 -----~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~-~irl~al~WI~~~~~l~~~~l~pflp~LLp 240 (671)
...++|..+..+|..+++.++.......+.+++.++..+++.+. .+|..++.++..++...+..+.||++.++|
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~ 642 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSP 642 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 35679999999999999988764334578899999998888776 889999999999999999999999999999
Q ss_pred HHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhChhhHhhhh
Q 005891 241 AILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEVLHFL 318 (671)
Q Consensus 241 ~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~--~~tRiaaL~WL~~L~~~~p~~i~~~l 318 (671)
.++..+.+.++++|..|..+.+.+.+.+++ .-.-.+..+++.+.+.+.+++ ...|.+++.+++.+...+++.+.+|+
T Consensus 643 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l 721 (861)
T 2bpt_A 643 YLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL 721 (861)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHhch-hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999988999999999998888887753 001124677888888887654 77999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHHhhc----cchHHHHHHH----HHhhcccc----chhhhhH
Q 005891 319 NDIFDTLLKALSDPS-----------DEVVLLVLEVHACIAKD----LQHFRQLVVF----LVHNFRVD----NSLLEKR 375 (671)
Q Consensus 319 ~~l~p~LL~~LsD~s-----------~eV~~~~l~lLa~Is~~----~~~F~~fm~~----LL~lf~~d----~~lLe~R 375 (671)
+.++|.+++.+.... ..||..+++++..|... ...|.+++.. +.+...+. ..-+...
T Consensus 722 ~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~ 801 (861)
T 2bpt_A 722 NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRA 801 (861)
T ss_dssp HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 999999999987432 35788889998888731 1345444444 43443331 3444555
Q ss_pred HHHHHHHHhccC-ChH-------HHHHHHHHhhc
Q 005891 376 GALIIRRLCVLL-DAE-------RVYRELSTILE 401 (671)
Q Consensus 376 g~~IIR~Lc~~L-~~E-------~Iy~~la~iL~ 401 (671)
+.-.+..||..+ +++ .++..|-..+.
T Consensus 802 a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 802 AVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp HHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHh
Confidence 556788888877 543 45555555444
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.86 E-value=1.6e-18 Score=203.85 Aligned_cols=338 Identities=14% Similarity=0.116 Sum_probs=266.1
Q ss_pred hhHHhHh-hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---------------------chhhhhHHHHHHHHHHhh
Q 005891 25 YSETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---------------------GDFIIFFNQIFDALCKLS 82 (671)
Q Consensus 25 ~~~~yl~-~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~---------------------~~il~~f~eIf~~L~kL~ 82 (671)
.+.+|+. .+++.++.++.|.+..||..|++.+.++++... +....+..++++.+++.+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 3467888 999999999999999999999999999986531 011234578888888777
Q ss_pred c-------CCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhHHhch
Q 005891 83 A-------DSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFL 153 (671)
Q Consensus 83 ~-------D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~-~~li~~L 153 (671)
. |.+.++|.+| ..++.+.+... ...++.++|.+.+.+.+.+|.+|..++.++..+....+ ..+..|+
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~----~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE----DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCc----HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 3456899888 77777766433 23478899999999999999999999999999988666 5577899
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC--CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---
Q 005891 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG--- 228 (671)
Q Consensus 154 p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~--~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~--- 228 (671)
+.+++.++..+.|+++.||..|+.+++.+.+.++... ...++.+++.++..+.++ +.+|..|+..+..+++..+
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~ 485 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAA 485 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999876421 245899999999999885 8899999999999887643
Q ss_pred -----------cCcccchHhHHHHHhhhhcCC---cHhHHHHHHHHHHHHHHhcCCC-----------------------
Q 005891 229 -----------DQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADP----------------------- 271 (671)
Q Consensus 229 -----------~~l~pflp~LLp~LL~~Lsd~---~~eIR~~A~~~n~~L~~~i~~~----------------------- 271 (671)
..+.||++.++|.+++.+.+. +.++|..+.++...+.+..+..
T Consensus 486 ~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 565 (876)
T 1qgr_A 486 DVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQME 565 (876)
T ss_dssp SCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999864 3567766666555444332210
Q ss_pred ------------------------------C-CC--CChHhHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhChhhHhh
Q 005891 272 ------------------------------A-DG--FDVGPILSIATRQLSSEW--EATRIEALHWISTLLNRHRTEVLH 316 (671)
Q Consensus 272 ------------------------------~-~~--~dl~~il~~L~~~L~~~~--~~tRiaaL~WL~~L~~~~p~~i~~ 316 (671)
+ .. -.++.+++.+...+.+.. +.+|..++.++..+....+..+.+
T Consensus 566 ~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 645 (876)
T 1qgr_A 566 SHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645 (876)
T ss_dssp TSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHH
Confidence 0 00 112456666777776653 367999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHhhccc
Q 005891 317 FLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAKD-----LQHFRQLVVFLVHNFRV 367 (671)
Q Consensus 317 ~l~~l~p~LL~~LsD~-s~eV~~~~l~lLa~Is~~-----~~~F~~fm~~LL~lf~~ 367 (671)
|++.++|.+++.|.|. .+.||..++++++.++.. .+|...++..+++.+.+
T Consensus 646 ~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC
Confidence 9999999999999998 899999999999998831 35677888888888865
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.86 E-value=1.1e-18 Score=214.77 Aligned_cols=399 Identities=14% Similarity=0.113 Sum_probs=309.9
Q ss_pred hhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC------------------
Q 005891 23 FFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD------------------ 84 (671)
Q Consensus 23 ~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D------------------ 84 (671)
+..+.+|++.++|.++..+.|++..||.+|.+++..+++.++.++.+|++++++.+.+.+.+
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~ 325 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 325 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccc
Confidence 44567899999999999999999999999999999999988888888999999999876631
Q ss_pred -------------------CchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 005891 85 -------------------SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144 (671)
Q Consensus 85 -------------------~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~i 144 (671)
....||.+| ..++.++. ...+.-...++.++|.+.+++.+.++.||..+++++..+...
T Consensus 326 ~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~-~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 404 (1230)
T 1u6g_C 326 DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS-TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404 (1230)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHT-TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccccccccccCHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 113467777 67777665 121111234788899999999999999999999988876542
Q ss_pred C-------------------chhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc
Q 005891 145 P-------------------DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA 205 (671)
Q Consensus 145 p-------------------~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~ 205 (671)
. ...+..++|.+++.+.+.+.|++..||.+++.+++.+++..+......++.+++.++..+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L 484 (1230)
T 1u6g_C 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL 484 (1230)
T ss_dssp HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred hccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHH
Confidence 1 124567999999999999999999999999999999998865433345799999999999
Q ss_pred CCCCH--HHHHHHHHHHHHHHhhc-CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC----CCCC--C
Q 005891 206 ASPDE--FTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP----ADGF--D 276 (671)
Q Consensus 206 ~s~d~--~irl~al~WI~~~~~l~-~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~----~~~~--d 276 (671)
.++++ .+|..++.++..+++.. +..+.||++.++|.++.++.|....+|..|..+...+.+.++.. +..+ .
T Consensus 485 ~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 564 (1230)
T 1u6g_C 485 NDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY 564 (1230)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHH
Confidence 98864 89999999999888754 45589999999999999999999999988888888888877641 1111 2
Q ss_pred hHhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc----
Q 005891 277 VGPILSIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD---- 350 (671)
Q Consensus 277 l~~il~~L~~~L--~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~---- 350 (671)
++.+++.+...+ .+.+...|.+|+.+++.+....++.+.++++.+++.|.+.+.++. +|..+++.++.|+..
T Consensus 565 ~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~--~r~~~~~al~~i~~~~~~~ 642 (1230)
T 1u6g_C 565 IKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKI 642 (1230)
T ss_dssp HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch--hHHHHHHHHHHHHhCcccc
Confidence 478888888888 667888999999999999999999999999999999999998765 667788889888842
Q ss_pred --cchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC----hHHHHHHHHHhhcc--cCChhHHHHHHHHHHHHhcc
Q 005891 351 --LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD----AERVYRELSTILEG--EADLDFACTMVQALNLILLT 422 (671)
Q Consensus 351 --~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~----~E~Iy~~la~iL~~--~~dl~F~~~mVq~Ln~iLLT 422 (671)
+.++..++..|...+.++..-+..-+.-.+..++...+ .+.+-..+..++.- ++|......+.+.|..+.=+
T Consensus 643 ~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 643 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV 722 (1230)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Confidence 45677788888887766544333333334555555543 35555555444332 57777888888888877644
Q ss_pred ch
Q 005891 423 SS 424 (671)
Q Consensus 423 s~ 424 (671)
.+
T Consensus 723 ~~ 724 (1230)
T 1u6g_C 723 YP 724 (1230)
T ss_dssp CG
T ss_pred Cc
Confidence 44
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.85 E-value=1.5e-19 Score=222.38 Aligned_cols=392 Identities=13% Similarity=0.160 Sum_probs=304.0
Q ss_pred HHhHhhhHHHHHhccCC-CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhh
Q 005891 27 ETILQQIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D-~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv 104 (671)
..|.+.++|.++.++.| +++++|.+|++++.++++..+..+.+|.+++++.|...+.|+++.||..| .++..++...
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~- 206 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC- 206 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc-
Confidence 35789999999999995 89999999999999998876666778999999999999999999999998 6666665421
Q ss_pred cccchhhhhhhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005891 105 TESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 105 ~e~~~f~L~~fIP~L~e~i~~~-np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll 183 (671)
+....+.++|.+.+.+.+. ++.+|..++.++..+....+..+.+|++.+++.+++.+.|.+++||..+..+++.++
T Consensus 207 ---~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 207 ---GNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 283 (1230)
T ss_dssp -------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1222667888888887654 357888899999988887777889999999999999999999999999999999999
Q ss_pred HHhhcCCCCChHHHHHHHHHhcCC-------------------------------------CCHHHHHHHHHHHHHHHhh
Q 005891 184 QEIKNSPSVDYGRMAEILVQRAAS-------------------------------------PDEFTRLTAITWINEFVKL 226 (671)
Q Consensus 184 ~~I~~~~~~d~~~iI~iLl~~~~s-------------------------------------~d~~irl~al~WI~~~~~l 226 (671)
+..+......++.++|.++..+.. ..|.+|..|+..+..++..
T Consensus 284 ~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 284 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred HHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 877643222467788887765531 1145799999999999998
Q ss_pred cCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCC------C------C------CChHhHHHHHHHhc
Q 005891 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA------D------G------FDVGPILSIATRQL 288 (671)
Q Consensus 227 ~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~------~------~------~dl~~il~~L~~~L 288 (671)
.|..+.||+++++|.+...+.|.++++|..|.++...+.+..+... . + ..+..+++.+.+.+
T Consensus 364 ~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l 443 (1230)
T 1u6g_C 364 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQM 443 (1230)
T ss_dssp CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHh
Confidence 7777889999999999999999999999999998888877654310 0 0 01356777788889
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhh--cc----chHHHHHHH
Q 005891 289 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD--EVVLLVLEVHACIAK--DL----QHFRQLVVF 360 (671)
Q Consensus 289 ~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~--eV~~~~l~lLa~Is~--~~----~~F~~fm~~ 360 (671)
.++++.+|.+++..+..+...+++.+.+|++.++|.+++.|.|+.+ +|+..++..++.+.+ +. +||..++..
T Consensus 444 ~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~ 523 (1230)
T 1u6g_C 444 KEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPP 523 (1230)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHH
Confidence 9999999999999999999999998999999999999999999875 888888888887763 22 377778888
Q ss_pred HHhhccccchhhhhHHHHHHHHHhccCCh-------------HHHHHHHHHhhcc-cCChhHHHHHHHHHHHHhcc
Q 005891 361 LVHNFRVDNSLLEKRGALIIRRLCVLLDA-------------ERVYRELSTILEG-EADLDFACTMVQALNLILLT 422 (671)
Q Consensus 361 LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~-------------E~Iy~~la~iL~~-~~dl~F~~~mVq~Ln~iLLT 422 (671)
|+..+.+........+--.+..++..+++ +.++..+-..+.. +.|.+.-...+..|..+.-.
T Consensus 524 L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 524 VVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 88777654332222222256666654443 4677777777742 35555555666666666544
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.85 E-value=1.5e-18 Score=204.14 Aligned_cols=350 Identities=11% Similarity=0.042 Sum_probs=274.6
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCC--chHHHHHH-HHHHHHHHHhhc
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~--d~~Vr~gA-~~LdrllKdIv~ 105 (671)
....|.+.++.++.+++..+ ..++.++..|++.... ...|+++++.|...+.|+ ++++|.+| ..+..+++++..
T Consensus 87 ~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~ 163 (876)
T 1qgr_A 87 ARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163 (876)
T ss_dssp HHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH
Confidence 44556777999999999999 9999999998875322 246899999999999988 89999999 788888876422
Q ss_pred ccchhhhhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhHHh--chHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 005891 106 ESDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~~~--np~vR~~alswL~~L~~ip~~~li~--~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ 181 (671)
+.-...++.++|.+.+.+.+. ++.+|..++..+..+....+..+.. ..+.+++.++..+.|++.+||..++++|..
T Consensus 164 ~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 111234788899999999887 7999999999999877644433221 123467778888899999999999999999
Q ss_pred HHHHhhcCCCCChH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc------------------C---cCcccchHhHH
Q 005891 182 FLQEIKNSPSVDYG-RMAEILVQRAASPDEFTRLTAITWINEFVKLG------------------G---DQLVPYYADIL 239 (671)
Q Consensus 182 ll~~I~~~~~~d~~-~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~------------------~---~~l~pflp~LL 239 (671)
+++..+......+. .+++.++....+.++.+|..|++.+..+++.. . ....++++.++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 323 (876)
T 1qgr_A 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (876)
T ss_dssp HHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHh
Confidence 99866532222456 89999999999999999999998666666532 0 11223568899
Q ss_pred HHHhhhhcC-------CcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-
Q 005891 240 GAILPCISD-------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR- 311 (671)
Q Consensus 240 p~LL~~Lsd-------~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p- 311 (671)
|.+++.|.. .+.++|..|..+...+.+..++ --++.+++.+.+.+.+.+|..|.+|+..++.+.++++
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~ 399 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH
Confidence 999998862 3467999999999888877653 1267888999999999999999999999999999887
Q ss_pred hhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHh
Q 005891 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLC 384 (671)
Q Consensus 312 ~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-------~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc 384 (671)
+.+.+|++.++|.+++.|+|+++.||..++++++++++ ...|+..++..|++.+.++ ..+..+....+..+|
T Consensus 400 ~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLA 478 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 66889999999999999999999999999999999994 2478999999999999775 444555555566665
Q ss_pred cc
Q 005891 385 VL 386 (671)
Q Consensus 385 ~~ 386 (671)
..
T Consensus 479 ~~ 480 (876)
T 1qgr_A 479 EA 480 (876)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.74 E-value=4.1e-15 Score=161.51 Aligned_cols=342 Identities=12% Similarity=0.114 Sum_probs=258.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhc-----------chh-hhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccch
Q 005891 42 SDQDSRVRYYACEALYNIAKVVR-----------GDF-IIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQ 109 (671)
Q Consensus 42 ~D~d~rVR~~A~eaL~nI~Kv~~-----------~~i-l~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~ 109 (671)
.+.+..||.+|+..+.|.++... ..+ ......|-+.|...+.+.++.|+.++..+..+.+....+
T Consensus 47 ~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v~~~~~~i~~ia~~~~~~--- 123 (462)
T 1ibr_B 47 PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPV--- 123 (462)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGG---
T ss_pred CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHhccc---
Confidence 34589999999999999864210 000 012235666677777777777733346777766533221
Q ss_pred hhhhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhc-CCchhHHhchHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHH
Q 005891 110 FSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDS--SHEIRQQADSALWEFLQ 184 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~--np~vR~~alswL~~L~~-ip~~~li~~Lp~fL~gLf~lL~D~--~~eVR~~a~~~L~~ll~ 184 (671)
..-+.++|.|.+.+.+. ++.+|..++.++..+.. ..+..+..+++.+++.+.+.+.|+ +.+||.+|.+++..++.
T Consensus 124 ~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 13578999999999998 99999999999998876 335557789999999999999998 79999999999998765
Q ss_pred HhhcCCCCC--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchH-hHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 185 EIKNSPSVD--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA-DILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 185 ~I~~~~~~d--~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp-~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
.++.....+ .+.+++.+.....++++.+|..++..+..+....+..+.+|++ .+++.++.++.+.++++|..|.+..
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 443211111 1346888888888899999999999999999998888889999 9999999999999999999998877
Q ss_pred HHHHHhc-------CC------C--CCCCC-----hHhHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhChhhH
Q 005891 262 EELRAIK-------AD------P--ADGFD-----VGPILSIATRQLS-------SEWEATRIEALHWISTLLNRHRTEV 314 (671)
Q Consensus 262 ~~L~~~i-------~~------~--~~~~d-----l~~il~~L~~~L~-------~~~~~tRiaaL~WL~~L~~~~p~~i 314 (671)
..+.+.. .+ + ..... +..+++.+.+.+. +++|..|.+|...+..+...+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-- 361 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 361 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--
Confidence 7765542 10 0 01122 2567787877774 34578899999999999999985
Q ss_pred hhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc------chHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC
Q 005891 315 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL------QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (671)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~------~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~ 388 (671)
..++.++|.+...++|++..+|..++.+++.++++. .+...++..++..+.+....+..++...+-++|..++
T Consensus 362 -~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 362 -DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp -THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred -HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 445788999999999999999999999999999532 3556788888888877777667666666666666554
Q ss_pred h
Q 005891 389 A 389 (671)
Q Consensus 389 ~ 389 (671)
+
T Consensus 441 ~ 441 (462)
T 1ibr_B 441 E 441 (462)
T ss_dssp G
T ss_pred c
Confidence 3
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=1.6e-14 Score=165.13 Aligned_cols=348 Identities=14% Similarity=0.150 Sum_probs=242.2
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
....+.++|++..++.|+++.||+.|+.+++++.+.. .+.... +++++.|.+++.|+++.|+.+| .+|..++++-..
T Consensus 116 ~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 116 DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 3566778899999999999999999999999998743 333322 4688999999999999999999 666665442110
Q ss_pred ccchhh-hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891 106 ESDQFS-IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 106 e~~~f~-L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
. ..+. ....++.|...+.+.+|..+..++.++..+....+.+ ...+++.+..++.++++.|+..|+.++..+..
T Consensus 194 ~-~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 194 S-NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp C-CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred c-cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 0 0011 2345666677777889999999999888776443322 45677777789999999999999998877754
Q ss_pred HhhcCCCC-C--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 185 EIKNSPSV-D--YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 185 ~I~~~~~~-d--~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
.+...+.. . .+.+.+.++.. .++++.+|..|+.++..+....|..+.+++..+ + +..+++..||..|.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al~~- 341 (591)
T 2vgl_B 269 LLPKDSDYYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKLDI- 341 (591)
T ss_dssp SCCBTTBSHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHHHH-
T ss_pred ccCCCHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHHHH-
Confidence 33111111 1 24566666654 458999999999999999998887776665543 2 4434448899887654
Q ss_pred HHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHH
Q 005891 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVL 341 (671)
Q Consensus 262 ~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l 341 (671)
+.+++. .-+++.+++.|.+.+.+.++..|..++.+++.++.+++.. .+..++.|++.++|+.+.|+..+.
T Consensus 342 --L~~l~~----~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~~~v~~Ll~ll~~~~~~v~~e~i 411 (591)
T 2vgl_B 342 --MIRLAS----QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQTKVNYVVQEAI 411 (591)
T ss_dssp --HHHTCC----SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred --HHHHCC----hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HHHHHHHHHHHHcccchHHHHHHH
Confidence 444443 2357899999999999889999999999999999998754 456788888999999999999888
Q ss_pred HHHHHHhh-ccchHHHHHHHHHhhcccc-chhhhhHHHHHHHHHhccC-ChHHHHHHHHH
Q 005891 342 EVHACIAK-DLQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLCVLL-DAERVYRELST 398 (671)
Q Consensus 342 ~lLa~Is~-~~~~F~~fm~~LL~lf~~d-~~lLe~Rg~~IIR~Lc~~L-~~E~Iy~~la~ 398 (671)
..+..|.. ........+..|.+.+.+. ..........++-+.|..+ +++.+.+.+.+
T Consensus 412 ~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~ 471 (591)
T 2vgl_B 412 VVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLE 471 (591)
T ss_dssp HHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHST
T ss_pred HHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHHHH
Confidence 88887763 2333344555566655433 2222222233444444444 33444444433
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.70 E-value=1.7e-15 Score=164.44 Aligned_cols=353 Identities=11% Similarity=0.038 Sum_probs=248.2
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHH--HHHHHHHHhhcCC-chHHHHHH-HHHHHHHHHhhccc
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFN--QIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~-~il~~f~--eIf~~L~kL~~D~-d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
.++.++..+.++|..+|..|+.++.++...... .+-..+. .+++.|.+++.+. ++.||..| ..|..+...-....
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 378888899999999999999999887642111 2222222 5788899888887 88898877 66666654110000
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch-HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHH
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L-p~fL~gLf~lL~D-~~~eVR~~a~~~L~~ll~~ 185 (671)
....-...+|.|.+.+.+.++.+|..++..+..+....+..-...+ ...++.|.+++.+ ++.+||..|..+|..+...
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 1111246899999999999999999999999998875432111111 2346666778885 7999999999999998853
Q ss_pred h-hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCcHhHHHHHHHHHHH
Q 005891 186 I-KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEE 263 (671)
Q Consensus 186 I-~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~ 263 (671)
- ......-...++|.++..+.+.++.++..++..+..++...+..... .-.+++|.++..+.+.++++|..|..+...
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 2 11001124789999999999999999999988887776533211100 124578888889999999999999888776
Q ss_pred HHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-hHHHHHHHHhcCCCCHHHHHHHHH
Q 005891 264 LRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLE 342 (671)
Q Consensus 264 L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eV~~~~l~ 342 (671)
+.....+....+--..+++.+.+.+.++++.+|..|+..|..+..+.+....... .+++|.|++.|.|++++|+..++|
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 5421100000000025788999999999999999999999999988877665555 489999999999999999999999
Q ss_pred HHHHHhhc--cchHH-----HHHHHHHhhccccchhhhhHHHHHHHHHhc
Q 005891 343 VHACIAKD--LQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (671)
Q Consensus 343 lLa~Is~~--~~~F~-----~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~ 385 (671)
+++.++.+ ....+ .++..|++++.+...-+...+-..+.+++.
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999853 22222 267778888876555445555555666655
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.68 E-value=1e-15 Score=166.15 Aligned_cols=319 Identities=16% Similarity=0.044 Sum_probs=229.5
Q ss_pred hhHHHHHhccCCC-CHHHHHHHHHHHHHHHHHhcchhhh-hHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 32 QIVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 32 ~Ii~pvL~~l~D~-d~rVR~~A~eaL~nI~Kv~~~~il~-~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
.++|.++..+.++ ++.+|..|+.++.+++......... .-..+++.|.+++.++++.||..| ..|..+..+......
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999998 8999999999999997521111111 124689999999999999999988 677776553211001
Q ss_pred hhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC-chhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip-~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
...-...+|.|.+.+.+ .++.+|..++..+..+.... +..-......+++.|.+++.+++.+||..++.+|..+...-
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 11124578999999985 79999999999999998543 11112234667788888999999999999999998887421
Q ss_pred hcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 187 KNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 187 ~~~~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
.... .+--..+++.++..+.++++.+|..|+..+..+..-.+..... .-.+++|.+.+.+.++++.+|..|..+...+
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1000 0001357899999999999999999999888776543221111 1236889999999999999999998887665
Q ss_pred HHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhHhhhh-hHHHHHHHHhcCCCCHHHHHHHHH
Q 005891 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLE 342 (671)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~-~p~~i~~~l-~~l~p~LL~~LsD~s~eV~~~~l~ 342 (671)
.....+....+--..+++.+...+.+++..+|..|...|..+... .++.+.... .+++|.|+..|.+++++|+..+++
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 383 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 421000000000025777888888888899999999999999887 444444333 369999999999999999999999
Q ss_pred HHHHHhhc
Q 005891 343 VHACIAKD 350 (671)
Q Consensus 343 lLa~Is~~ 350 (671)
.|..+...
T Consensus 384 aL~~l~~~ 391 (450)
T 2jdq_A 384 GLENILRL 391 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998853
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.66 E-value=1.5e-15 Score=170.31 Aligned_cols=318 Identities=16% Similarity=0.086 Sum_probs=228.4
Q ss_pred hhhHHHHHhccCCC-CHHHHHHHHHHHHHHHHHhcchhhhh--HHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891 31 QQIVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRGDFIIF--FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~-d~rVR~~A~eaL~nI~Kv~~~~il~~--f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
..++|.++.++.++ ++.||..|+.++.+++..... .... -..+++.|.+++.++++.||..| .+|..++.+-...
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 35899999999998 899999999999999753111 1111 13668889999988999999988 7777766431110
Q ss_pred cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-chhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 005891 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip-~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~ 185 (671)
.....-...+|.|.+.+.+.++.+|..++..+..+.... +..-......+++.|..++.|++++||..|+.+|..+...
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 011122467999999999999999999999999998543 2111233456677888899999999999999999988742
Q ss_pred hhcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCcHhHHHHHHHHHHH
Q 005891 186 IKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEE 263 (671)
Q Consensus 186 I~~~~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~ 263 (671)
-.... .+--..+++.|+..+.++++.+|..|+..+..++.-.+..... .-.+++|.++..+.++++++|..|..+...
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 11000 0001267899999999999999999999888776533221111 124788999999999999999999888776
Q ss_pred HHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh--hHhhhh--hHHHHHHHHhcCCCCHHHHHH
Q 005891 264 LRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT--EVLHFL--NDIFDTLLKALSDPSDEVVLL 339 (671)
Q Consensus 264 L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~--~i~~~l--~~l~p~LL~~LsD~s~eV~~~ 339 (671)
+.....+....+--..+++.|...+.+.+..+|..|+..|..+...... +...++ .+.+|.|+..|.+++++|+..
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 447 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 5431100000000024667777777777899999999999999887543 322222 358999999999999999999
Q ss_pred HHHHHHHHhh
Q 005891 340 VLEVHACIAK 349 (671)
Q Consensus 340 ~l~lLa~Is~ 349 (671)
++++|..+..
T Consensus 448 al~aL~~l~~ 457 (530)
T 1wa5_B 448 TLDALENILK 457 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999884
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.65 E-value=4.1e-15 Score=166.75 Aligned_cols=356 Identities=11% Similarity=0.049 Sum_probs=248.9
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcch-hhh-hHHHHHHHHHHhhcCC-chHHHHHH-HHHHHHHHHhhc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FII-FFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~-il~-~f~eIf~~L~kL~~D~-d~~Vr~gA-~~LdrllKdIv~ 105 (671)
....++.++..+.+.++.+|..|+.++.+++...... +.. .-..+++.|.+++.++ ++.||..| ..|..+..+-..
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 5567899999999999999999999988885321111 110 1136789999999887 88898877 666666542110
Q ss_pred ccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhH-HhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM-LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~l-i~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
......-...+|.|.+.+.+.++.+|..++..+..+....+..- ...-...++.|..++.|++.+||..|+.+|..++.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 00111124678999999999999999999999999986543210 00112456777779999999999999999999885
Q ss_pred Hh-hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch-HhHHHHHhhhhcCCcHhHHHHHHHHHH
Q 005891 185 EI-KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNE 262 (671)
Q Consensus 185 ~I-~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pfl-p~LLp~LL~~Lsd~~~eIR~~A~~~n~ 262 (671)
.- +.........+++.|+..+.++++.++..|+..+..+....+....... .+++|.++..+.+.++++|..|..+..
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 32 1101112467899999999999999999999988888754332221122 377889999999999999999988776
Q ss_pred HHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-hHHHHHHHHhcCCCCHHHHHHHH
Q 005891 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVL 341 (671)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eV~~~~l 341 (671)
.+.....+....+--..+++.|...+.++++.+|..|+..|..+..+.++.+.... .+++|.|+..|.+++++|+..++
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 404 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 65421000000000025788899999999999999999999999988877665544 47899999999999999999999
Q ss_pred HHHHHHhhc-c---chHHH-----HHHHHHhhccccchhhhhHHHHHHHHHhc
Q 005891 342 EVHACIAKD-L---QHFRQ-----LVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (671)
Q Consensus 342 ~lLa~Is~~-~---~~F~~-----fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~ 385 (671)
|+|+.++.+ . .+.+. .+..|+.++.++..-+...+-..+.+++.
T Consensus 405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 999999853 2 23222 56667777765544444444445555554
No 18
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=6.5e-15 Score=148.78 Aligned_cols=193 Identities=11% Similarity=0.108 Sum_probs=159.0
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhc-CCchHHHHHH-HHHHHHHHHhhccc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~-D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
+..+-+.+...+.|++|++|+.|.+++..+++.+.+.....+.++++.|.+++. |++..|+.+| ..+..+++.
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~----- 87 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG----- 87 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-----
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-----
Confidence 455666788999999999999999999999876433222334688888888885 8888888777 555555431
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
.+..+..|.+.+++.|+..++|+++.||.+|..+|..+...
T Consensus 88 -------------------------------------l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-- 128 (242)
T 2qk2_A 88 -------------------------------------LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-- 128 (242)
T ss_dssp -------------------------------------HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--
T ss_pred -------------------------------------HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--
Confidence 12356788999999999999999999999999999998763
Q ss_pred cCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC-c-CcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHH
Q 005891 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-D-QLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (671)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~-~-~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (671)
..++.++|.+...+.++++.+|..++.||..++...+ . .+.+|++.++|.+.+++.|+.+++|..|.++...+.
T Consensus 129 ----~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 129 ----TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp ----SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999877654 3 467899999999999999999999999999999999
Q ss_pred HhcCC
Q 005891 266 AIKAD 270 (671)
Q Consensus 266 ~~i~~ 270 (671)
..+++
T Consensus 205 ~~vg~ 209 (242)
T 2qk2_A 205 KLMGD 209 (242)
T ss_dssp HHHCH
T ss_pred HHcCH
Confidence 88864
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.64 E-value=1.3e-14 Score=162.38 Aligned_cols=319 Identities=17% Similarity=0.105 Sum_probs=231.0
Q ss_pred hhhHHHHHhccCCCC-HHHHHHHHHHHHHHHHHhcchhhh-hHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc
Q 005891 31 QQIVPPVLNSFSDQD-SRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d-~rVR~~A~eaL~nI~Kv~~~~il~-~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
..++|.++..+.+++ +.+|..|+.+|.+|+......... .-...++.|.+++.++++.||..| .+|..++.+-....
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 358999999999987 999999999999998531111111 112588999999999999999988 77777765321101
Q ss_pred chhhhhhhHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 108 DQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i-~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
....-...+|.|.+.+ .+.++.+|..++..+..+....+..-.......++.|.+++.+++++|+..|+.+|..+...-
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 1111234789999999 678999999999999999876332333345777888888999999999999999998887321
Q ss_pred hcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCC-cHhHHHHHHHHHHH
Q 005891 187 KNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDK-EEKIRVVARETNEE 263 (671)
Q Consensus 187 ~~~~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~-~~eIR~~A~~~n~~ 263 (671)
.... .+--..+++.++..+.++++.++..|+..|..++.-.+..... .-.+++|.+...+.+. ++.+|..|..+...
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 1000 0001257889999999999999999999998877633221111 1256788889999888 89999999888776
Q ss_pred HHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCCCCHHHHHHHH
Q 005891 264 LRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVL 341 (671)
Q Consensus 264 L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eV~~~~l 341 (671)
+.....+....+--..+++.|...+.+.+..+|..|+..|..+......+...++ .+.++.|+..|.+++++|+..++
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 6531000000000025577788888777889999999999999988434444444 47899999999999999999999
Q ss_pred HHHHHHhh
Q 005891 342 EVHACIAK 349 (671)
Q Consensus 342 ~lLa~Is~ 349 (671)
++|..|..
T Consensus 436 ~~L~~l~~ 443 (528)
T 4b8j_A 436 EGLENILK 443 (528)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999984
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.63 E-value=9.2e-14 Score=158.81 Aligned_cols=351 Identities=17% Similarity=0.191 Sum_probs=246.2
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccch
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQ 109 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~ 109 (671)
.....+.++.++.+++..+|..+..++.++++... +.. .-+...+.+.++|+++.+|..| +..+.. +. ..
T Consensus 47 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-e~~---~l~~n~l~kdL~~~n~~ir~~A--L~~L~~-i~---~~ 116 (591)
T 2vgl_B 47 VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP-DMA---IMAVNSFVKDCEDPNPLIRALA--VRTMGC-IR---VD 116 (591)
T ss_dssp CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH-HHH---HTTHHHHGGGSSSSSHHHHHHH--HHHHHT-CC---SG
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc-hHH---HHHHHHHHHHcCCCCHHHHHHH--HHHHHc-CC---hH
Confidence 35566778889999999999999888888876422 221 2345678888999999999888 322322 22 12
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
.-.+.++|.+.+++.+.+|.||+.++.++..+....+. .... +.+++.|..+|.|+++.||.+|..+|..+.+.-+..
T Consensus 117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 34677889999999999999999999999988775432 2221 468888889999999999999988888766432110
Q ss_pred CCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 190 PSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 190 ~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
...+ ....++.++..+.+.++..+...+.++..+. +.+ -+...++++.+++++.+.++.|+..|.++...+...+
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKD-DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELL 270 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCS-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSC
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCC-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc
Confidence 0123 3556777777777788888888888775433 322 1235789999999999999999998888766554322
Q ss_pred CCCCCCCC--hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005891 269 ADPADGFD--VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (671)
Q Consensus 269 ~~~~~~~d--l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~ 346 (671)
....+.+. .+.+.+.|.. +.+++..+|..|+.++..+....|+.+.+|...++ ..++|+ ..|+..++++|..
T Consensus 271 ~~~~~~~~~~~~~~~~~L~~-L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~----~~~~d~-~~Ir~~al~~L~~ 344 (591)
T 2vgl_B 271 PKDSDYYNMLLKKLAPPLVT-LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF----VKYNDP-IYVKLEKLDIMIR 344 (591)
T ss_dssp CBTTBSHHHHHHHTHHHHHH-HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS----CCTTSC-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe----eccCCh-HHHHHHHHHHHHH
Confidence 11111111 1344445553 34567889999999999999999988888776542 223555 9999999999999
Q ss_pred HhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh--HHHHHHHHHhhccc
Q 005891 347 IAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGE 403 (671)
Q Consensus 347 Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~--E~Iy~~la~iL~~~ 403 (671)
+++ +...+.++..|++...+...-.......-|.++|...++ +.+...+.+.+...
T Consensus 345 l~~-~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~ 402 (591)
T 2vgl_B 345 LAS-QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTK 402 (591)
T ss_dssp TCC-SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HCC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHccc
Confidence 984 456788899998887665444444444467777877642 56666666666543
No 21
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.62 E-value=2.5e-14 Score=170.30 Aligned_cols=250 Identities=18% Similarity=0.258 Sum_probs=209.4
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--chhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~--~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
.++..+...+.|+..- ..||.++..|++... ....+|+-.+++.++.+++|.+..||++| .+.+.+++.+ +
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~----~ 127 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV----N 127 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS----C
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC----C
Confidence 5778888888888554 888888888885543 25678888899999999999999999999 5677766633 3
Q ss_pred hhhhhhhHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 109 QFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~-np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
.+++..++|.|.+.+.+. .|+.+..++..+..+....+..+...||+++|.+..+++|+.+||.++|..++..++..++
T Consensus 128 ~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD 207 (986)
T ss_dssp GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC
Confidence 567899999999999764 7999999999999999777788999999999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHhcCCCCH--------------------------------------HHHHHHHHHHHHHHhhc--
Q 005891 188 NSPSVDYGRMAEILVQRAASPDE--------------------------------------FTRLTAITWINEFVKLG-- 227 (671)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~s~d~--------------------------------------~irl~al~WI~~~~~l~-- 227 (671)
+ .|++.+||.|+.++.+|++ .+++.+...+.+|+++-
T Consensus 208 n---~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 208 N---KDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp C---TTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred C---cchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 7 6888888888888887753 56778888999999984
Q ss_pred CcCcccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhcCC-CCC-------CCChHhHHHHHHHhcCC
Q 005891 228 GDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKAD-PAD-------GFDVGPILSIATRQLSS 290 (671)
Q Consensus 228 ~~~l~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~-~~~-------~~dl~~il~~L~~~L~~ 290 (671)
|.+..||+|+++|++-+... -++||+|+.|.++...|.+..+. ... .-|...+...+.+.+..
T Consensus 285 ~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (986)
T 2iw3_A 285 PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKD 356 (986)
T ss_dssp HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTT
T ss_pred HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcc
Confidence 56789999999999999776 68999999999999999888654 211 23566777778877764
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.60 E-value=2.4e-14 Score=160.22 Aligned_cols=319 Identities=11% Similarity=0.073 Sum_probs=228.3
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc-chhh-hhHHHHHHHHHHhhcCCc-hHHHHHH-HHHHHHHHHhhcc
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFI-IFFNQIFDALCKLSADSD-ANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~-~~il-~~f~eIf~~L~kL~~D~d-~~Vr~gA-~~LdrllKdIv~e 106 (671)
..-+|.++..+.++++.+|..|+.++.+++.... .... ..-..+++.|.+++.+++ +.+|..| ..|.++..+-...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3458899999999999999999999988865322 1111 112367889999998887 8998877 6777765521110
Q ss_pred cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchH--HHHHHHHHhc-CCCChHHHHHHHHHHHHHH
Q 005891 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDGLFNML-SDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp--~fL~gLf~lL-~D~~~eVR~~a~~~L~~ll 183 (671)
.....-...+|.|.+.+.+.++.+|..++..+..+..-.+. ....+- ..++.|+.++ .+++.+|+..|+.+|..++
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11111235799999999999999999999999999754332 111111 2566777788 7789999999999999988
Q ss_pred HHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCcHhHHHHHHHHHH
Q 005891 184 QEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNE 262 (671)
Q Consensus 184 ~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~~eIR~~A~~~n~ 262 (671)
..-...........++.|+..+.++++.++..|+..+..+....+..... .-.+++|.++..+.+++++++..|..+..
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 64311111124678999999999999999999998888776443221111 23467899999999999999999888776
Q ss_pred HHHHhcCCCCCCCChHhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHhhhh-hHHHHHHHHhcCCCCHHHHHHH
Q 005891 263 ELRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLV 340 (671)
Q Consensus 263 ~L~~~i~~~~~~~dl~~il~~L~~~L~~~-~~~tRiaaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eV~~~~ 340 (671)
.+..........+--..+++.|...+.+. +..+|..|...|..+..+.+..+.... .+++|.|+..|.+.+++|+..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 65421000000000035678888888887 899999999999999987766554433 3789999999999999999999
Q ss_pred HHHHHHHhhc
Q 005891 341 LEVHACIAKD 350 (671)
Q Consensus 341 l~lLa~Is~~ 350 (671)
+++|+.++.+
T Consensus 392 ~~aL~nl~~~ 401 (528)
T 4b8j_A 392 AWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 9999999953
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=3.6e-14 Score=143.27 Aligned_cols=206 Identities=17% Similarity=0.218 Sum_probs=173.7
Q ss_pred CCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Q 005891 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINE 222 (671)
Q Consensus 144 ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~-s~d~~irl~al~WI~~ 222 (671)
.++.++...+| +.++..+.|.+-.+|+++..+|..+++..+.....++.++++.+...+. +++..+|..|+..+..
T Consensus 7 ~~~~di~~~l~---~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~ 83 (242)
T 2qk2_A 7 LDPVDILSKMP---KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLAL 83 (242)
T ss_dssp TSCBCCGGGSC---TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCcccccccCC---HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 44555555555 3455688999999999999999999987433223468899999999995 9999999999999999
Q ss_pred HHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005891 223 FVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHW 302 (671)
Q Consensus 223 ~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~W 302 (671)
++...+..+.+|.+.++|.++..+.|..+.+|..|..+...+... ..++.+++.+...+.+.++.+|..++.|
T Consensus 84 la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~ll~~l~~~l~~~~~~vr~~~l~~ 156 (242)
T 2qk2_A 84 LAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS-------TSLEAQQESIVESLSNKNPSVKSETALF 156 (242)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 999888899999999999999999999999999999998887654 2478999999999999999999999999
Q ss_pred HHHHHhhC-hh-hHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHH
Q 005891 303 ISTLLNRH-RT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVV 359 (671)
Q Consensus 303 L~~L~~~~-p~-~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~--~~~~F~~fm~ 359 (671)
|..+...+ |+ ...+|++.++|.+.++|+|+.++||..+..+++.+.. ++..|.+++.
T Consensus 157 l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 157 IARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99988887 44 3568999999999999999999999999999999884 3334544443
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.57 E-value=9.3e-13 Score=151.46 Aligned_cols=368 Identities=15% Similarity=0.126 Sum_probs=246.0
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
....+.+++++.+++.|+++.||++|+.+++++.+...+.+ ..+++.+.+++.|.++.|+.+| .+|..+++
T Consensus 137 ~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~---- 208 (618)
T 1w63_A 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCE---- 208 (618)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH----
Confidence 45678889999999999999999999999999988644322 2557788899999999999988 56555443
Q ss_pred ccch--hhhhhhHHHHHHhhc---------------CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHh---cC
Q 005891 106 ESDQ--FSIEEFIPLLRERMN---------------VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM---LS 165 (671)
Q Consensus 106 e~~~--f~L~~fIP~L~e~i~---------------~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~l---L~ 165 (671)
..+. .....++|.+.+.+. ..+|..+..++.++..+....+ +...-+.++|..+.+- ..
T Consensus 209 ~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~-~~~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 209 RSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD-DSSEAMNDILAQVATNTETSK 287 (618)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH-HHHHTTHHHHHHHHHTSCCSS
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhcccccc
Confidence 2111 134566777766554 3589999999999998876432 2333333444444322 22
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhh
Q 005891 166 DSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (671)
Q Consensus 166 D~~~eVR~~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~ 244 (671)
..+..|.-.|..++.. +... .. ....++.+...+.++++.+|..|+.++..+....|..+.+ ..+.++.
T Consensus 288 ~~~~aV~~ea~~~i~~----l~~~--~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~----~~~~i~~ 357 (618)
T 1w63_A 288 NVGNAILYETVLTIMD----IKSE--SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQR----HRSTIVD 357 (618)
T ss_dssp THHHHHHHHHHHHHHH----SCCC--HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGG----GHHHHHH
T ss_pred chHHHHHHHHHHHHHh----cCCC--HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHH----HHHHHHH
Confidence 3455677776665544 2211 11 2346788888899999999999999999999876655443 4567888
Q ss_pred hhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHH
Q 005891 245 CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDT 324 (671)
Q Consensus 245 ~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~ 324 (671)
|+.|++.+||..|.++... ++.+ -+++.+++.+..++.+.+...|..++.|++.++.+++.....+ ++.
T Consensus 358 ~l~d~d~~Ir~~alelL~~---l~~~----~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~----v~~ 426 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFA---LVNG----NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWH----IDT 426 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHH---HCCS----SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHH----HHH
T ss_pred HccCCChhHHHHHHHHHHH---Hccc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHH----HHH
Confidence 9999999999988775444 4332 3468899999999988889999999999999999987665544 555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhcccc---chhhhhHHHHHHHHHhccC-------------
Q 005891 325 LLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVD---NSLLEKRGALIIRRLCVLL------------- 387 (671)
Q Consensus 325 LL~~LsD~s~eV~~~~l~lLa~Is~-~~~~F~~fm~~LL~lf~~d---~~lLe~Rg~~IIR~Lc~~L------------- 387 (671)
+++.|++..+.|+..++..+.++.. +++.....+..|.+.+.++ ..+. ..+..|+-..|..+
T Consensus 427 ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~ 505 (618)
T 1w63_A 427 IMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQV 505 (618)
T ss_dssp HHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCC
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH-HHHHHHHhhhHHHhcccccccccccCC
Confidence 6666666666666656666666653 3334445677777766543 3333 24555666666543
Q ss_pred ChHHHHHHHHHhhcc-cCChhHHHHHHHHHHHHhccchh
Q 005891 388 DAERVYRELSTILEG-EADLDFACTMVQALNLILLTSSE 425 (671)
Q Consensus 388 ~~E~Iy~~la~iL~~-~~dl~F~~~mVq~Ln~iLLTs~E 425 (671)
+++.+...+..++.. .++...-...+..+--+....|+
T Consensus 506 ~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~ 544 (618)
T 1w63_A 506 TEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC 544 (618)
T ss_dssp CHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc
Confidence 344555555555533 23433333444444444444443
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.2e-13 Score=139.52 Aligned_cols=215 Identities=13% Similarity=0.204 Sum_probs=183.1
Q ss_pred CCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHHhhcCC--CCChHHHHHHHHHhc-CCCCHHHHHHHHHH
Q 005891 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE-FLQEIKNSP--SVDYGRMAEILVQRA-ASPDEFTRLTAITW 219 (671)
Q Consensus 144 ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~-ll~~I~~~~--~~d~~~iI~iLl~~~-~s~d~~irl~al~W 219 (671)
+++.+++.-||. +....+.+++-.-|++|...|.. +++..++.. ..++.+++..+...+ .+++..++..|+..
T Consensus 8 ~~~~~i~~kl~~---~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~a 84 (249)
T 2qk1_A 8 LPEETILDKLPK---DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQS 84 (249)
T ss_dssp CCCBCCGGGSCT---THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred cChhhhhhhCCh---hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 445566666665 44567899999999999888888 776443322 356889999999999 79999999999999
Q ss_pred HHHHHhhcC-cCcc-cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHH
Q 005891 220 INEFVKLGG-DQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRI 297 (671)
Q Consensus 220 I~~~~~l~~-~~l~-pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRi 297 (671)
+..+++-.+ ..+- +|...++|.++..+.|..+.+|+.+..+...+.+.+........++.+++.|...+.+.++.+|+
T Consensus 85 l~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~ 164 (249)
T 2qk1_A 85 VELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRM 164 (249)
T ss_dssp HHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHH
Confidence 999998877 7898 99999999999999999999999999999999988643111122789999999999999999999
Q ss_pred HHHHHHHHHHhhCh---hhHhhhh-hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHH
Q 005891 298 EALHWISTLLNRHR---TEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFL 361 (671)
Q Consensus 298 aaL~WL~~L~~~~p---~~i~~~l-~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~--~~~~F~~fm~~L 361 (671)
+++.||..+...++ ..+.+|+ +.++|.+.+++.|++++||..+.++++.++. ++..|.+|+..|
T Consensus 165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999987 6788999 9999999999999999999999999999883 667788888886
No 26
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.53 E-value=4.8e-13 Score=137.23 Aligned_cols=255 Identities=14% Similarity=0.103 Sum_probs=195.4
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
...++.++..+.|+++.||..|+.++.++.. ++.++.|.+++.|+++.||..| ..|.++ .. ..
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l----~~--~~ 85 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQI----KI--CK 85 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS----CC--CT
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHh----cc--cc
Confidence 4568899999999999999999999887741 3678889999999999999988 555442 21 12
Q ss_pred hhhhhhHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 110 FSIEEFIPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 110 f~L~~fIP~L~e-~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
..+..++|.|.. ...+.++.||..++..+..+....+ .+-+.+++.|..++.|+++.||..|..+|+.+..
T Consensus 86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 235567777774 5678999999999999998753221 2456778888889999999999999888876532
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
+..++.++..+.++++.+|..|+..+..+ .. .-+..++.+...+.|+++++|..|..+...+.
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~-----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--- 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININ---KY-----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--- 220 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHH---TC-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh---cc-----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---
Confidence 34688888999999999999999988764 11 24688899999999999999999988765532
Q ss_pred CCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 005891 269 ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD-PSDEVVLLVLEVHAC 346 (671)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD-~s~eV~~~~l~lLa~ 346 (671)
+ ...++.|...+.+++ +|..+...|+.+.. +..+|.|.+.+.| ++++++..+.+.+.+
T Consensus 221 -~-------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 221 -D-------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -C-------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -C-------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 1 467788888887755 78888888877643 2567888888865 467888888877654
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.4e-13 Score=138.06 Aligned_cols=197 Identities=10% Similarity=0.134 Sum_probs=157.0
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHH-HHHHhcchh--hhhHHHHHHHHHHhh-cCCchHHHHHH-HHHHHHHHHhhc
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYN-IAKVVRGDF--IIFFNQIFDALCKLS-ADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~n-I~Kv~~~~i--l~~f~eIf~~L~kL~-~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
+.+-+.....+++++|+-|..|.+++.. +++.+..-. ...+.++++.|.+.+ .|++..|+.+| .++..+++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~---- 90 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD---- 90 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH----
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH----
Confidence 3444456677799999999999999888 764333211 223357777877777 67777777666 44444332
Q ss_pred ccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-hhHH-hchHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005891 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDML-GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~-~~li-~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll 183 (671)
..+ ..+. .|...+++.++..+.|..+.||.++..+|+.++
T Consensus 91 --------------------------------------~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~ 132 (249)
T 2qk1_A 91 --------------------------------------KLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTIC 132 (249)
T ss_dssp --------------------------------------HHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred --------------------------------------hcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 222 2455 788889999999999999999999999999999
Q ss_pred HHhhcCCCC--ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---cCcccch-HhHHHHHhhhhcCCcHhHHHHH
Q 005891 184 QEIKNSPSV--DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVPYY-ADILGAILPCISDKEEKIRVVA 257 (671)
Q Consensus 184 ~~I~~~~~~--d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~---~~l~pfl-p~LLp~LL~~Lsd~~~eIR~~A 257 (671)
+.+.. ... .++.+++.+...++++++.+|..++.||..++...+ ..+.+|+ |.++|.+.++|.|+++++|..|
T Consensus 133 ~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA 211 (249)
T 2qk1_A 133 KYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIG 211 (249)
T ss_dssp HHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 97732 112 278999999999999999999999999999999877 4578899 9999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 005891 258 RETNEELRAIKAD 270 (671)
Q Consensus 258 ~~~n~~L~~~i~~ 270 (671)
.++...+++.+++
T Consensus 212 ~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 212 FESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCH
Confidence 9999999999985
No 28
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.50 E-value=4.8e-12 Score=152.32 Aligned_cols=351 Identities=11% Similarity=0.103 Sum_probs=231.4
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc-
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT- 105 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~- 105 (671)
.....|...++.++.+.+..||..+|+++..|++. +.-..|+++++.|..+++++++..+.|| ..+..++|+.-.
T Consensus 81 ~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~---d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~ 157 (960)
T 1wa5_C 81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS---DFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPL 157 (960)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---HSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTS
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh---hCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888888888899999999999888764 2224689999999999988888888888 777777775421
Q ss_pred -ccc------hhhhhhhHHHHHHh-------hcCCCH---HHH------HHHHHHHHHhh--cCCchhHHhchHHHHHHH
Q 005891 106 -ESD------QFSIEEFIPLLRER-------MNVLNP---YVR------QFLVGWITVLD--SVPDIDMLGFLPDFLDGL 160 (671)
Q Consensus 106 -e~~------~f~L~~fIP~L~e~-------i~~~np---~vR------~~alswL~~L~--~ip~~~li~~Lp~fL~gL 160 (671)
.++ ...+..+.|.+.+. +.+..+ .+| ..++..+..+. ..| ..+..+++.+++.+
T Consensus 158 ~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~-~~~~~~~~~~~~~~ 236 (960)
T 1wa5_C 158 FRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIP-EFFEDNIQVGMGIF 236 (960)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCC-HHHHHTHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHH
Confidence 110 11355556655543 333222 234 22444444432 223 23445666776666
Q ss_pred HHhcCCC--------C-------hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC-----CCCHHHHHHHHHHH
Q 005891 161 FNMLSDS--------S-------HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-----SPDEFTRLTAITWI 220 (671)
Q Consensus 161 f~lL~D~--------~-------~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~-----s~d~~irl~al~WI 220 (671)
.+++... + ..||+.+++++..+.+...+.....++.+++.+++.+. ..++.++..+++.+
T Consensus 237 ~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl 316 (960)
T 1wa5_C 237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL 316 (960)
T ss_dssp HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHH
T ss_pred HHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHH
Confidence 6655321 1 25889999999988875543111235566666665543 34678888899977
Q ss_pred HHHHhhcC--cCcc--cchHhHH-HHHhhhhcCCc-----------------------HhHHHHHHHHHHHHHHhcCCCC
Q 005891 221 NEFVKLGG--DQLV--PYYADIL-GAILPCISDKE-----------------------EKIRVVARETNEELRAIKADPA 272 (671)
Q Consensus 221 ~~~~~l~~--~~l~--pflp~LL-p~LL~~Lsd~~-----------------------~eIR~~A~~~n~~L~~~i~~~~ 272 (671)
..+++... ..+. ||++.++ +.+++.|..++ .++|..|..+...+....++
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~-- 394 (960)
T 1wa5_C 317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV-- 394 (960)
T ss_dssp HHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH--
T ss_pred HHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch--
Confidence 77776432 2233 8999999 89999886321 13566666666666655431
Q ss_pred CCCChHhHHHHHHHhcC------CCcHHHHHHHHHHHHHHHhhC---hhhHhh-----hhhHH-HHHHHHhcCCC---CH
Q 005891 273 DGFDVGPILSIATRQLS------SEWEATRIEALHWISTLLNRH---RTEVLH-----FLNDI-FDTLLKALSDP---SD 334 (671)
Q Consensus 273 ~~~dl~~il~~L~~~L~------~~~~~tRiaaL~WL~~L~~~~---p~~i~~-----~l~~l-~p~LL~~LsD~---s~ 334 (671)
.-+..+++.+.+.+. +.+|..|.+|+..++.++++. ...+.. .+..+ ...+++.|.|+ .|
T Consensus 395 --~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p 472 (960)
T 1wa5_C 395 --LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHI 472 (960)
T ss_dssp --HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCH
T ss_pred --hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCc
Confidence 113455566666665 678999999999999999752 211211 22222 23455666777 89
Q ss_pred HHHHHHHHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhcc
Q 005891 335 EVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (671)
Q Consensus 335 eV~~~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~ 386 (671)
.||..+||+++++++ .++++.+++..+++.+.++...+...+..-+.++|..
T Consensus 473 ~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 473 ILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred eehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 999999999999996 3578999999999999877777788888888998874
No 29
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.49 E-value=1.6e-11 Score=141.43 Aligned_cols=316 Identities=13% Similarity=0.127 Sum_probs=214.7
Q ss_pred HHhHhhhHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHh
Q 005891 27 ETILQQIVPPVLNSF--SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l--~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdI 103 (671)
....+.+.|+|..|+ .|+++.||+.|+.+++.+.+... +..+. ++.++.+.++++|+++.|+.+| .++.. +
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~----i 214 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPM-GDWTSRVVHLLNDQHLGVVTAATSLITT----L 214 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCc-hhHHHHHHHHhCCCCccHHHHHHHHHHH----H
Confidence 578889999999999 99999999999999999998544 33331 2457778888999999999998 44444 3
Q ss_pred hcccch-h--hhhhhHHHHHHhhcC-------------CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCC
Q 005891 104 VTESDQ-F--SIEEFIPLLRERMNV-------------LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS 167 (671)
Q Consensus 104 v~e~~~-f--~L~~fIP~L~e~i~~-------------~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~ 167 (671)
..+.+. + .++.++..|...+.. ++|..+..++.++..+....+.+....+.++++.++..+.|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~ 294 (621)
T 2vgl_A 215 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP 294 (621)
T ss_dssp HHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 332211 1 133333444433321 279999999999998876555677778888888888776554
Q ss_pred Ch-----------HHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccch
Q 005891 168 SH-----------EIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (671)
Q Consensus 168 ~~-----------eVR~~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pfl 235 (671)
.+ .|--.|..++-.+ . +..+ ....++.+...+.++++.+|..|+.|+..++...|. .+++
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l----~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~ 366 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHH----D--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAV 366 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHH----C--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHH
T ss_pred cccccccccchHHHHHHHHHHHHHhc----C--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHH
Confidence 31 4444444433322 1 1122 456788888888899999999999999999876652 2346
Q ss_pred HhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH
Q 005891 236 ADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV 314 (671)
Q Consensus 236 p~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i 314 (671)
.+..+.++.|+. |+++.||..|.+. +.+++.+ -+++.+++.+..++.+.+...|..++.|++.++.+++...
T Consensus 367 ~~~~~~i~~~L~~d~d~~Ir~~aL~l---L~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~ 439 (621)
T 2vgl_A 367 KTHIETVINALKTERDVSVRQRAVDL---LYAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY 439 (621)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHH---HHHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHHhccCCCHhHHHHHHHH---HHHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 677788899999 9999999877665 4444432 3578999999999988888899999999999999887665
Q ss_pred hhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhccc
Q 005891 315 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRV 367 (671)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-~~~~F~~fm~~LL~lf~~ 367 (671)
..+++.++ +.+.+..+.|...+...+..+.. ++..-+..+..|.+.+.+
T Consensus 440 ~~~v~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~ 489 (621)
T 2vgl_A 440 TWYVDTIL----NLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQA 489 (621)
T ss_dssp HHHHHHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTS
T ss_pred HHHHHHHH----HHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcC
Confidence 55555444 44443333333333334444332 222223345555555543
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.46 E-value=8e-11 Score=135.44 Aligned_cols=352 Identities=13% Similarity=0.043 Sum_probs=239.5
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHHHhhcCC-chHHHHHH-HHHHHHHHHhhc
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i-l~~f~eIf~~L~kL~~D~-d~~Vr~gA-~~LdrllKdIv~ 105 (671)
+-...+|+++..+.|+++.||..|+.++.++++...... +.....+++.|.+.+.+. ++.++..| ..|..+.++--.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 334578999999999999999999999999986432111 111246788888887654 78887777 666655442110
Q ss_pred ccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L-p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
.....-...+|.|.+.+.+.++.+|..++..|..+....+.....+. ...++.|.+++.+++.+++..+..+|..+..
T Consensus 91 -~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 91 -LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp -HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 01112235799999999999999999999999999765432222221 4567777889999999999998888888773
Q ss_pred Hhhc-CCCCChHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhcCcCcccc--hHhHHHHHhhhhcCCcHhHHHHHHHH
Q 005891 185 EIKN-SPSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEEKIRVVARET 260 (671)
Q Consensus 185 ~I~~-~~~~d~~~iI~iLl~~~~s~d-~~irl~al~WI~~~~~l~~~~l~pf--lp~LLp~LL~~Lsd~~~eIR~~A~~~ 260 (671)
.-.. ...+--...++.++..+.+.+ +..+..++..+..+.. .+ ..... -...++.+++.+.+.+++++..|..+
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~-~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CT-THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-Cc-ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 1100 000011245778888877765 5566667777766553 21 11111 23578899999998899999988888
Q ss_pred HHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCCC--HHHH
Q 005891 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPS--DEVV 337 (671)
Q Consensus 261 n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s--~eV~ 337 (671)
...+.+.... ......+++.|.+.+.+++..+|..|...|..|....++..... -.+.++.|+..|.+.+ ++|+
T Consensus 248 L~nL~~~~~~---~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 248 LRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHGGGCTT---CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhcchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 7777544322 22346899999999999999999999999999988754422211 2457888999887643 7999
Q ss_pred HHHHHHHHHHhhccc---hHH------HHHHHHHhhccccc-hhhhhHHHHHHHHHhcc
Q 005891 338 LLVLEVHACIAKDLQ---HFR------QLVVFLVHNFRVDN-SLLEKRGALIIRRLCVL 386 (671)
Q Consensus 338 ~~~l~lLa~Is~~~~---~F~------~fm~~LL~lf~~d~-~lLe~Rg~~IIR~Lc~~ 386 (671)
..++++|+.++.+.. +.+ ..+..|++++.++. .-+...+...+++|+..
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 999999999985321 111 36677777776553 34454556677888753
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.44 E-value=1.1e-11 Score=142.65 Aligned_cols=344 Identities=13% Similarity=0.054 Sum_probs=228.4
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
....+.++.++.+++...|..+.-++.+.++. ..+. .--+...+.+-+.|+++.||..| ..|.++. . .
T Consensus 69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-~~e~---~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~---~ 137 (618)
T 1w63_A 69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-RQDV---HLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----S---S 137 (618)
T ss_dssp GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-CHHH---HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----C---H
T ss_pred cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-CcHH---HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----C---H
Confidence 44666777888889988888776665555431 1222 12466778888899999999888 5555542 1 2
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
.-.+.++|.+..++.+.+|+||+.++-++..+....+.. ++.+++.+..++.|+++.|+.+|..+|..+.+.-..
T Consensus 138 ~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~- 212 (618)
T 1w63_A 138 EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD- 212 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH-
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH-
Confidence 235788999999999999999999999999887654432 235666677799999999999998888877532110
Q ss_pred CCCChHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhc---CCcH
Q 005891 190 PSVDYGRMAEILVQRAA---------------SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS---DKEE 251 (671)
Q Consensus 190 ~~~d~~~iI~iLl~~~~---------------s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls---d~~~ 251 (671)
....+.+++|.++..+. .+++..+..++.++..+....+. ...-+-.+++.+++... +...
T Consensus 213 ~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 213 MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHhccccccchHH
Confidence 00123444554443322 35788888899999877654321 11112234444443322 2334
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCC
Q 005891 252 KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (671)
Q Consensus 252 eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD 331 (671)
.+...|.++. ... .. ..--....++.|...+.+.+..+|..|+.+|..+....|..+.+|.+ .++.+++|
T Consensus 292 aV~~ea~~~i---~~l-~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~----~i~~~l~d 361 (618)
T 1w63_A 292 AILYETVLTI---MDI-KS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRS----TIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHH---HHS-CC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHH----HHHHGGGS
T ss_pred HHHHHHHHHH---Hhc-CC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHH----HHHHHccC
Confidence 4554444443 332 11 10001245677888888777889999999999999999887776655 56678899
Q ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC--hHHHHHHHHHhhcc
Q 005891 332 PSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD--AERVYRELSTILEG 402 (671)
Q Consensus 332 ~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~--~E~Iy~~la~iL~~ 402 (671)
++..|+..++++|..+++ +..++.++..|++.+.+...-.....-..|.++|.... .+.....+-+.+..
T Consensus 362 ~d~~Ir~~alelL~~l~~-~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~ 433 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVN-GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTT 433 (618)
T ss_dssp SCHHHHHHHHHHHHHHCC-SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHh
Confidence 999999999999999995 44578889999998876655455555556777777653 33444444444443
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.43 E-value=2.6e-10 Score=134.54 Aligned_cols=347 Identities=13% Similarity=0.038 Sum_probs=235.7
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcch-hhhhHHHHHHHHHHhhc-CCchHHHHHH-HHHHHHHHHhhccc
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~-il~~f~eIf~~L~kL~~-D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
...+|+++..+.+++..||..|+.++.+|++..... .+..-+.+++.|.+++. +.++.+|..| ..|..+.++--. .
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-L 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-H
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-H
Confidence 567899999999999999999999999998532211 11112467888888775 4478887777 666665442100 0
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQE- 185 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L-p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~- 185 (671)
....-...||.|.+.+.+.++.+|..++..|..+....+..-.... ...++.|.+++.+++.+|+..+..+|..+...
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 1111235799999999999999999999999999876433222221 34677777899999999999998888866521
Q ss_pred --hhcCCCCChHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhhcCcCcccc--hHhHHHHHhhhhcCCcHhHHHHHHHH
Q 005891 186 --IKNSPSVDYGRMAEILVQRAASPDEF-TRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEEKIRVVARET 260 (671)
Q Consensus 186 --I~~~~~~d~~~iI~iLl~~~~s~d~~-irl~al~WI~~~~~l~~~~l~pf--lp~LLp~LL~~Lsd~~~eIR~~A~~~ 260 (671)
.+. .+--...++.++..+.+.+++ .+..++..+..+.. .+.. .+. -...+|.++..+.+.+++++..|..+
T Consensus 308 ~e~~~--~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~-~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 308 QESKL--IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp HHHHH--HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTH-HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred hHHHH--HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHH-HHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence 100 000124577788877776654 44445555555553 2211 111 23567899999999888888888777
Q ss_pred HHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCCC--HHHH
Q 005891 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPS--DEVV 337 (671)
Q Consensus 261 n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s--~eV~ 337 (671)
...+.+.... ......+++.|.+.+.+.++.+|..|...|..|....++..... -.+.++.|++.|.+.+ ++|+
T Consensus 384 L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~ 460 (780)
T 2z6g_A 384 LRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460 (780)
T ss_dssp HHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHH
Confidence 6666544322 22357899999999999999999999999999988765433222 2457888998887632 4899
Q ss_pred HHHHHHHHHHhhccch-------H--HHHHHHHHhhccccch-hhhhHHHHHHHHHhc
Q 005891 338 LLVLEVHACIAKDLQH-------F--RQLVVFLVHNFRVDNS-LLEKRGALIIRRLCV 385 (671)
Q Consensus 338 ~~~l~lLa~Is~~~~~-------F--~~fm~~LL~lf~~d~~-lLe~Rg~~IIR~Lc~ 385 (671)
..++++|+.|+.+... + ...+..|++++.+... .+...+...+++|+.
T Consensus 461 ~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 9999999999853211 1 1246677777765543 455556678888885
No 33
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.43 E-value=4.6e-11 Score=122.35 Aligned_cols=224 Identities=16% Similarity=0.061 Sum_probs=172.6
Q ss_pred HHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch
Q 005891 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (671)
Q Consensus 75 f~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L 153 (671)
++.|.+++.|+++.||..| ..|.+.- -+..+|.|.+.+.+.++.+|..++..+..+...+. .+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-----~~ 88 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-----CE 88 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-----TH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-----cc
Confidence 5677788899999999887 5544431 24568889999999999999999999988754322 35
Q ss_pred HHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc
Q 005891 154 PDFLDGLF-NMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (671)
Q Consensus 154 p~fL~gLf-~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~ 232 (671)
+.+++.|. .++.|+++.||..+..+|+.+..... ...+.+++.++..+.++++.+|..|+..+..+. .
T Consensus 89 ~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~---~---- 157 (280)
T 1oyz_A 89 DNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN---D---- 157 (280)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC---C----
Confidence 55666665 36789999999999999998875322 124678999999999999999999988876432 1
Q ss_pred cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh
Q 005891 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (671)
Q Consensus 233 pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~ 312 (671)
+..+|.+...+.|+++.+|..|..+...+ + .+-..+++.+...+.+++..+|..|+..|+.+.
T Consensus 158 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~-----~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----- 220 (280)
T 1oyz_A 158 ---KATIPLLINLLKDPNGDVRNWAAFAININ----K-----YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----- 220 (280)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHH----T-----CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhh----c-----cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----
Confidence 34677888888999999999998887654 1 123578888999999889999999999888764
Q ss_pred hHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 313 ~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
.+..+|.|++.|.|++ |+..+.+.|+++..
T Consensus 221 -----~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 221 -----DKRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp -----CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred -----CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2456788888888865 88899999999875
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.43 E-value=8.1e-11 Score=130.40 Aligned_cols=336 Identities=13% Similarity=0.068 Sum_probs=223.5
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHhhc-CCchHHHHHH-HHHHHHHHHhh
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIV 104 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~--~il~~f~eIf~~L~kL~~-D~d~~Vr~gA-~~LdrllKdIv 104 (671)
+-...+|++...+.++|+.+|..|+.++.++++.-.. .+. .-...++.|.+++. ++++.++..| ..|.++.++--
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~-~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~ 92 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH-hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch
Confidence 4455789999999999999999999999999853211 111 11367888888775 4477777666 67766554211
Q ss_pred cccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHh-chHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005891 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 105 ~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~-~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll 183 (671)
. .....-...+|.|.+.+.+.++.+|..++..+..+....+..-.. .=...++.|.+++.+++.++|..+..+|..+.
T Consensus 93 ~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 93 G-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp H-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0 011222357999999999999999999999999987654322111 12456777778999999999988877776544
Q ss_pred HH--------------------hhcCC-----------------CCC------hHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005891 184 QE--------------------IKNSP-----------------SVD------YGRMAEILVQRAASPDEFTRLTAITWI 220 (671)
Q Consensus 184 ~~--------------------I~~~~-----------------~~d------~~~iI~iLl~~~~s~d~~irl~al~WI 220 (671)
.. +.... ..+ -...++.++..+.++++.++..++..+
T Consensus 172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L 251 (529)
T 1jdh_A 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHH
Confidence 21 10000 000 024677888888888888888888888
Q ss_pred HHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCC--CcHHHHHH
Q 005891 221 NEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIE 298 (671)
Q Consensus 221 ~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~--~~~~tRia 298 (671)
..++...+... ...+++|.+.+.+.+.++++|..|..+...+...-.+....+--...++.|.+.+.+ +++.+|..
T Consensus 252 ~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~ 329 (529)
T 1jdh_A 252 RNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 329 (529)
T ss_dssp HHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence 87776544322 356889999999999999999998887766532100000000001355666666643 44789999
Q ss_pred HHHHHHHHHhhChh------hHhhhhhHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhccchHH-----HHHHHHHhhcc
Q 005891 299 ALHWISTLLNRHRT------EVLHFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDLQHFR-----QLVVFLVHNFR 366 (671)
Q Consensus 299 aL~WL~~L~~~~p~------~i~~~l~~l~p~LL~~LsD~s-~eV~~~~l~lLa~Is~~~~~F~-----~fm~~LL~lf~ 366 (671)
|+..|..+....++ .+. ..+.+|.|++.|.+++ +.|+..++|+++.++.+...-. .++..|++++.
T Consensus 330 a~~~L~nl~~~~~~~~~~~~~i~--~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 330 AICALRHLTSRHQEAEMAQNAVR--LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHH--HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHH--HcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHH
Confidence 99999999776543 222 2356899999999987 5999999999999995433322 24556666665
Q ss_pred ccch
Q 005891 367 VDNS 370 (671)
Q Consensus 367 ~d~~ 370 (671)
++..
T Consensus 408 ~~~~ 411 (529)
T 1jdh_A 408 RAHQ 411 (529)
T ss_dssp HHHH
T ss_pred HHhH
Confidence 4433
No 35
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.41 E-value=1.5e-11 Score=141.72 Aligned_cols=353 Identities=12% Similarity=0.072 Sum_probs=226.8
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
...-+.++.++.+++...|..+.-++.++++... +. .--+...+.+-++|+++.+|..| ..|.++ .. .
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e~---~~L~iN~l~kDl~~~n~~ir~lALr~L~~i----~~---~ 141 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-EL---IRLINNAIKNDLASRNPTFMGLALHCIANV----GS---R 141 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-HH---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHH----CC---H
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-HH---HHHHHHHHHHhcCCCCHHHHHHHHHHhhcc----CC---H
Confidence 3456788889999999999988777766654222 21 22456677788889999999888 444443 22 2
Q ss_pred hhhhhhHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 110 FSIEEFIPLLRERM--NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 110 f~L~~fIP~L~e~i--~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
.-.+.++|.+.+++ .+.+|+||+.++-++..+....+ +++.+ +.+++.+.++|.|+++.|+.+|..++..+...=+
T Consensus 142 e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 142 EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 24688999999999 99999999999999998877544 34333 4677888889999999999999888888776332
Q ss_pred cCCCCChHHHHHHHHHhcC---C----------CCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcH--h
Q 005891 188 NSPSVDYGRMAEILVQRAA---S----------PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE--K 252 (671)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~---s----------~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~--e 252 (671)
.....-++.++.++-..+. . +++..|...+.|+..+...........+.++++.++..+.+... .
T Consensus 220 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 220 EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKK 299 (621)
T ss_dssp HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccc
Confidence 1000112333333333221 1 16788888888887655332223444455666666655433210 0
Q ss_pred H--H----HHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHH
Q 005891 253 I--R----VVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (671)
Q Consensus 253 I--R----~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL 326 (671)
+ + .+..++...++..-. ..--....++.|...+.+.+..+|..||.|+..+....|.. +.+....+.++
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~~---~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~~~~~~~~i~ 374 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHDS---EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EAVKTHIETVI 374 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HHHHTTHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HHHHHHHHHHH
Confidence 1 1 111122223333321 11113466778888888788899999999999999887621 12334456677
Q ss_pred HhcC-CCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC--hHHHHHHHHHhhcc
Q 005891 327 KALS-DPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD--AERVYRELSTILEG 402 (671)
Q Consensus 327 ~~Ls-D~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~--~E~Iy~~la~iL~~ 402 (671)
.+|. |++..|+..+++++..+++ +...+.++..|++.+.+...-.....-.-|..+|.... .+.....+.+.+..
T Consensus 375 ~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~ 452 (621)
T 2vgl_A 375 NALKTERDVSVRQRAVDLLYAMCD-RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRI 452 (621)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred HHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 8888 9999999999999999994 56789999999998865443222222223445554432 24444455555543
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.40 E-value=2e-11 Score=136.90 Aligned_cols=358 Identities=18% Similarity=0.130 Sum_probs=234.9
Q ss_pred hHHHHHhccCCC-CHHHHHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 33 IVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRGDFIIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 33 Ii~pvL~~l~D~-d~rVR~~A~eaL~nI~Kv~~~~il~~f-~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
++|+++.+|... ++.+++.|+.+|.||+........... ...+|.|.+++.+++..||..| .+|..+..|-..-...
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 689999999754 589999999999999853221111111 1468999999999999999988 7777776532111111
Q ss_pred hhhhhhHHHHHHhhcCCCH-----HHHHHHHHHHHHhhcCC-chhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005891 110 FSIEEFIPLLRERMNVLNP-----YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np-----~vR~~alswL~~L~~ip-~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll 183 (671)
..-...+|.|...+...+. .+...++..+..+.... ...-......+++.|.+++.+++.+|+..|+.+|..+.
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1223467888888876543 45666777777776532 22233455677888889999999999999999998876
Q ss_pred HHhhcC-CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc-ccchHhHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 184 QEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYYADILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 184 ~~I~~~-~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l-~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
..-... ..+--..+++.|+..+.+++..++..++..+..++...+..- .-.-.+.++.+...+.++++++|..|..+.
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 411100 000123578899999999999999999998887764322110 001234556667778889999999988776
Q ss_pred HHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCCCCHHHHHH
Q 005891 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLL 339 (671)
Q Consensus 262 ~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eV~~~ 339 (671)
..+...-.+....+--..+++.|...+.+.+..+|..|...|..+..+...+...++ .+.++.|+..|..++++|+..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 655321000000000135778899999888999999999999999887654433332 468899999999999999999
Q ss_pred HHHHHHHHhh---ccchHHHHHHHHHhhccccchhh-hhHHHHHHHHHhccCChHHHHHHHHHhhcc
Q 005891 340 VLEVHACIAK---DLQHFRQLVVFLVHNFRVDNSLL-EKRGALIIRRLCVLLDAERVYRELSTILEG 402 (671)
Q Consensus 340 ~l~lLa~Is~---~~~~F~~fm~~LL~lf~~d~~lL-e~Rg~~IIR~Lc~~L~~E~Iy~~la~iL~~ 402 (671)
+++.|..|.. +...-+++ ..++ ++-|--.|..|+..=| +.||..-.+++++
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~-----------~~~iee~ggl~~ie~Lq~~~n-~~i~~~A~~iie~ 475 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKL-----------SIMIEECGGLDKIEALQRHEN-ESVYKASLNLIEK 475 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHH-----------HHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhccchHHH-----------HHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 9999988862 11111111 1112 2223335666655443 5677777777753
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.39 E-value=3.1e-10 Score=133.90 Aligned_cols=379 Identities=10% Similarity=0.070 Sum_probs=245.9
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhh
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L 112 (671)
++.++..+.+++..+|.++++.+..+. +..+ . ...++.|.+++.+.++.||..| ..|..+.++.-....-...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~---~~~i-~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~ 190 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQD---DAEL-A--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 190 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHH---HHHH-H--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTC
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhh---HHHH-H--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhc
Confidence 578899999999999998887765432 2222 1 4678888888889999999888 7777766532111001112
Q ss_pred hhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCch--hHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC
Q 005891 113 EEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 113 ~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~--~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
+.++|.|.+.+.. .++.+|..++..|..+...... .+.. ...++.|..++.+++++||..|..+|..+...-...
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 4678888888875 5999999999999998765432 1222 146788888999999999999999999998642110
Q ss_pred C-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc---CcccchHhHHHHHhhhhcCCcHh-HHHHHHHHHHHH
Q 005891 190 P-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD---QLVPYYADILGAILPCISDKEEK-IRVVARETNEEL 264 (671)
Q Consensus 190 ~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~---~l~pflp~LLp~LL~~Lsd~~~e-IR~~A~~~n~~L 264 (671)
. .+--...++.++..+.+++..++..++..+..+....++ .+. -...++.++..+.+.+++ .+..|..+...+
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL--ASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH--TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 0 000246889999999999988888777666544421110 111 124566777777765544 444555555444
Q ss_pred HHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005891 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (671)
Q Consensus 265 ~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lL 344 (671)
... .+....+--..+++.|...+.+.+...+..|+.-|..+....+.. ....+++|.|++.|.+++++|+..++++|
T Consensus 347 s~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 347 SVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp HTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 321 100000000245788888888888888999988888888776543 23578999999999999999999999999
Q ss_pred HHHhhccchHH------HHHHHHHhhcccc--chhhhhHHHHHHHHHhccCCh----------HHHHHHHHHhhcccCCh
Q 005891 345 ACIAKDLQHFR------QLVVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDA----------ERVYRELSTILEGEADL 406 (671)
Q Consensus 345 a~Is~~~~~F~------~fm~~LL~lf~~d--~~lLe~Rg~~IIR~Lc~~L~~----------E~Iy~~la~iL~~~~dl 406 (671)
+.++.+..... ..+..|++++.+. ..-+...+...+++||..-.. +.....|.+.|....+.
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~ 503 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence 99996432221 2556667766542 224556667788888764321 12356677777666555
Q ss_pred hHHHHHHHHHHHHhccchh
Q 005891 407 DFACTMVQALNLILLTSSE 425 (671)
Q Consensus 407 ~F~~~mVq~Ln~iLLTs~E 425 (671)
+.....+.+|.++-...+.
T Consensus 504 ~v~~~A~~aL~nLa~~~~~ 522 (780)
T 2z6g_A 504 PLIKATVGLIRNLALCPAN 522 (780)
T ss_dssp HHHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHHhcCHHH
Confidence 7777888888888765433
No 38
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.36 E-value=1.2e-11 Score=121.39 Aligned_cols=184 Identities=23% Similarity=0.178 Sum_probs=148.8
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
+..++.++..+.|+++.||..|++++..+.. ++.++.|.+++.|+++.||..| ..|.++ .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~----- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI----G----- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHH----C-----
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhh----C-----
Confidence 5678899999999999999999999877631 2457778888999999999988 554443 1
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
-+..+|.|.+.+.+.++.+|..++..+..+.. +..++.|.+++.|++++||..|..+|+.+-.
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 14568899999999999999999999988753 2345566668999999999999998877631
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHH
Q 005891 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR 265 (671)
Q Consensus 190 ~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~ 265 (671)
+..++.++..+.++++.+|..|+..+..+- -+..++.+...+.|+++++|..|.++...+-
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 357888899999999999999999887652 2788899999999999999999998876543
No 39
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.36 E-value=2.1e-11 Score=118.67 Aligned_cols=186 Identities=23% Similarity=0.180 Sum_probs=150.6
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
.+-....+.++..+.|+|+.||..|++++..+.. ++.++.|.+++.|+++.||..| ..|.++ .
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~----~-- 73 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI----G-- 73 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C--
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh----C--
Confidence 3445678899999999999999999999877631 1446778888899999999988 554443 1
Q ss_pred cchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
-+..+|.|.+.+.+.++.+|..++..+..+.. |..++.|.+++.|+++.||..|..+|+.+-.
T Consensus 74 -----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 74 -----DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp -----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred -----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 13568999999999999999999999988753 2345556668999999999999998877632
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
+..++.++..+.++++.+|..|+..+..+ . -+..++.+...+.|+++.+|..|.++...+
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~---~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEI---G-------GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---C-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---C-------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45788899999999999999999999866 1 267888888889999999999999887654
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.35 E-value=2.2e-10 Score=131.81 Aligned_cols=330 Identities=13% Similarity=0.078 Sum_probs=222.2
Q ss_pred hhHHHHHhccCC-CCHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc
Q 005891 32 QIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 32 ~Ii~pvL~~l~D-~d~rVR~~A~eaL~nI~Kv~~~--~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
.++++++..+.+ .+..+|..|+.++.++++.... .+.. ...++.|.+++.++++.|+..| ..|.+++.+--...
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH--cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 578899998875 4899999999999988753211 1111 2578899999999999988888 77777765321101
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh---HHhchHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHH
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID---MLGFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFL 183 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~---li~~Lp~fL~gLf~lL~D~~-~eVR~~a~~~L~~ll 183 (671)
....-...+|.|.+.+.+.++.++..++..+..+....+.. +.. ...++.|.+++.+.+ .+++..+..+|..+.
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs 211 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA--SGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHH--cCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 11112568999999999999999999999998887533221 111 134556666777664 566777777766665
Q ss_pred HHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHH
Q 005891 184 QEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (671)
Q Consensus 184 ~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~ 263 (671)
..-.....+--...++.++..+.+++..++..++..+..++...+.. .....++|.++..+.+.++++|..|..+...
T Consensus 212 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 212 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 21000000001347889999999999999999999888887665432 2456899999999999999999999888776
Q ss_pred HHHhcCCCCCCCChHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChhhH--h--hhhhHHHHHHHHhcCCCC-HHH
Q 005891 264 LRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTEV--L--HFLNDIFDTLLKALSDPS-DEV 336 (671)
Q Consensus 264 L~~~i~~~~~~~dl~~il~~L~~~L~~--~~~~tRiaaL~WL~~L~~~~p~~i--~--~~l~~l~p~LL~~LsD~s-~eV 336 (671)
+...-.+....+--...++.|.+.+.+ +.+.+|..|+..|..+....++.- . -...+.+|.|++.|.+++ +.|
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 643100000000002356666666654 237899999999999976544311 1 113467999999999886 699
Q ss_pred HHHHHHHHHHHhhccchHH-----HHHHHHHhhccc
Q 005891 337 VLLVLEVHACIAKDLQHFR-----QLVVFLVHNFRV 367 (671)
Q Consensus 337 ~~~~l~lLa~Is~~~~~F~-----~fm~~LL~lf~~ 367 (671)
+..++|+++.++.++..-. .++..|++++.+
T Consensus 370 ~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 370 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc
Confidence 9999999999995433212 255556666544
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.35 E-value=9.1e-11 Score=132.02 Aligned_cols=317 Identities=16% Similarity=0.090 Sum_probs=218.0
Q ss_pred hhHHHHHhccC-CCCHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 32 QIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 32 ~Ii~pvL~~l~-D~d~rVR~~A~eaL~nI~Kv~~~~il-~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
.++|+++.++. +.++.+++.|+.+|.||+........ ..-...+|.|.+++.+++..|+..| .+|..+..|-..-..
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 47899999996 55699999999999999854222111 1112578999999999999999988 777776543211011
Q ss_pred hhhhhhhHHHHHHhhcCCCH-----HHHHHHHHHHHHhhcCC-chhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 005891 109 QFSIEEFIPLLRERMNVLNP-----YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np-----~vR~~alswL~~L~~ip-~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~l 182 (671)
...-...+|.|...+...+. .+...++..+..+.... +..-......+++.|.+++.+++++|+..|+.+|..+
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 11123457888888876443 45566777777776532 2223345567788888999999999999999999887
Q ss_pred HHHhhcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc-ccchHhHHHHHhhhhcCCcHhHHHHHHHH
Q 005891 183 LQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYYADILGAILPCISDKEEKIRVVARET 260 (671)
Q Consensus 183 l~~I~~~~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l-~pflp~LLp~LL~~Lsd~~~eIR~~A~~~ 260 (671)
...-.... .+--..+++.|+..+.++++.++..|+..+..++...+..- .-.-.+.++.+...+.++++++|..|..+
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 358 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHH
Confidence 74211000 00124578899999999999999999998887764322110 00123456677778888999999988877
Q ss_pred HHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hhHHHHHHHHhcCCCCHHHHH
Q 005891 261 NEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSDPSDEVVL 338 (671)
Q Consensus 261 n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~--l~~l~p~LL~~LsD~s~eV~~ 338 (671)
...+...-.+....+--..+++.+...+.+.+..+|..|...|..+..+...+...+ -.+.+|.|+..|..++++|+.
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 666542100000000013578888999999999999999999998887654443322 235799999999999999999
Q ss_pred HHHHHHHHHh
Q 005891 339 LVLEVHACIA 348 (671)
Q Consensus 339 ~~l~lLa~Is 348 (671)
.+++.|..|.
T Consensus 439 ~~L~aL~nil 448 (529)
T 3tpo_A 439 VILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 42
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.35 E-value=1e-10 Score=141.23 Aligned_cols=350 Identities=14% Similarity=0.127 Sum_probs=238.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHH----HHhhccc-----------
Q 005891 43 DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLV----KDIVTES----------- 107 (671)
Q Consensus 43 D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~Ldrll----KdIv~e~----------- 107 (671)
+..+-||.-.|.++..|++..-+. .|++.++.+..+++.++++ .+...+-+++ +|+....
T Consensus 101 ~~~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~--~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~ 175 (980)
T 3ibv_A 101 DEPAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQS--EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKD 175 (980)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChh--HHHHHHHHHHHHhHHHHHhcccccCHHHHhhh
Confidence 345789999999999998753322 4677777777766543321 1222223333 4443210
Q ss_pred -------chhhhhhhHHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHH
Q 005891 108 -------DQFSIEEFIPLLRERM----NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQAD 176 (671)
Q Consensus 108 -------~~f~L~~fIP~L~e~i----~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~ 176 (671)
.+.+++.+.+...+.+ ...++.++..++.++....+..+.+.+.. +.+++.+|++++| +++|.+|+
T Consensus 176 ~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~--~~~r~~A~ 252 (980)
T 3ibv_A 176 NLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI--EELRCAAC 252 (980)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS--HHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC--hHHHHHHH
Confidence 0112333444444444 34788999999999999988777776655 8899999999987 78999999
Q ss_pred HHHHHHHHHhhc-------------------------------------------------CCC-----------CChHH
Q 005891 177 SALWEFLQEIKN-------------------------------------------------SPS-----------VDYGR 196 (671)
Q Consensus 177 ~~L~~ll~~I~~-------------------------------------------------~~~-----------~d~~~ 196 (671)
+||.+++..-.. .+. .++..
T Consensus 253 ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ 332 (980)
T 3ibv_A 253 ETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYN 332 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHH
Confidence 887665432100 000 12456
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhh----c-----CcCcccchHhHHHHHhhhhcCCcH-------------hHH
Q 005891 197 MAEILVQRAASPDEFTRLTAITWINEFVKL----G-----GDQLVPYYADILGAILPCISDKEE-------------KIR 254 (671)
Q Consensus 197 iI~iLl~~~~s~d~~irl~al~WI~~~~~l----~-----~~~l~pflp~LLp~LL~~Lsd~~~-------------eIR 254 (671)
+++.++.++.++++++-..++..+..++.. . ...+.||+++++++++..|.+++. +.+
T Consensus 333 ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~ 412 (980)
T 3ibv_A 333 LFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQ 412 (980)
T ss_dssp THHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHH
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHH
Confidence 888999999999988888887766666653 1 234568999999999999986421 122
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChH----hHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhChhhH------hhhhhHH
Q 005891 255 VVARETNEELRAIKADPADGFDVG----PILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEV------LHFLNDI 321 (671)
Q Consensus 255 ~~A~~~n~~L~~~i~~~~~~~dl~----~il~~L~~~L~---~~~~~tRiaaL~WL~~L~~~~p~~i------~~~l~~l 321 (671)
+ .++....+++.+.--+...-+. .+.+.+.+.+. +.+|..++++|..++.+.++++... .++++.+
T Consensus 413 e-~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l 491 (980)
T 3ibv_A 413 E-MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVL 491 (980)
T ss_dssp H-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHH
T ss_pred H-HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHH
Confidence 2 2333334444332100011112 34445555553 3569999999999999999987633 2567788
Q ss_pred HHHHHHhcC-----CCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHh--hccccchhhhhHHHHHHHHHhccCCh-
Q 005891 322 FDTLLKALS-----DPSDEVVLLVLEVHACIAK----DLQHFRQLVVFLVH--NFRVDNSLLEKRGALIIRRLCVLLDA- 389 (671)
Q Consensus 322 ~p~LL~~Ls-----D~s~eV~~~~l~lLa~Is~----~~~~F~~fm~~LL~--lf~~d~~lLe~Rg~~IIR~Lc~~L~~- 389 (671)
++.+...++ ++.|.|+..++|+++++++ +.+|+.+++..++. .+.+.++-+..|+..-++++|....+
T Consensus 492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~ 571 (980)
T 3ibv_A 492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571 (980)
T ss_dssp HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence 888877765 8899999999999999993 67899999999999 88777777899999999999987754
Q ss_pred -----HHHHHHHHHhhc
Q 005891 390 -----ERVYRELSTILE 401 (671)
Q Consensus 390 -----E~Iy~~la~iL~ 401 (671)
+.|...+...|.
T Consensus 572 L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 572 VVNYTESSLAMLGDLLN 588 (980)
T ss_dssp CSSSHHHHHHHTTGGGC
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 567777777766
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.34 E-value=8.1e-09 Score=123.57 Aligned_cols=362 Identities=10% Similarity=0.097 Sum_probs=238.2
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
+++..+++ ++..+.++++.||+.+|..+...++..... ..+++.+++.+...+.| +.|+..| .++.+++++.-..
T Consensus 486 ~~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~ 561 (963)
T 2x19_B 486 DVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYD 561 (963)
T ss_dssp SHHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHH
Confidence 56777777 556777789999999999999888764432 25677888888888866 7788877 7888888764332
Q ss_pred cchhhhhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCc-hhHHhchHHHHHHHHHhcC-----CCChHHHH---HH
Q 005891 107 SDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLS-----DSSHEIRQ---QA 175 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~~--~np~vR~~alswL~~L~~ip~-~~li~~Lp~fL~gLf~lL~-----D~~~eVR~---~a 175 (671)
...+ ++.++..+.+.+.. .+...|..+++.+..+....+ .+..+|+..+++.+...+. +.+++.+. .+
T Consensus 562 l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 640 (963)
T 2x19_B 562 LPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHI 640 (963)
T ss_dssp CTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHH
T ss_pred HHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2222 56666666666654 467999999999998877554 7788999999988875442 23666665 35
Q ss_pred HHHHHHHHHHhhcCCC-----------------CC-----hHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhcCcCc
Q 005891 176 DSALWEFLQEIKNSPS-----------------VD-----YGRMAEILVQRAA--SPDEFTRLTAITWINEFVKLGGDQL 231 (671)
Q Consensus 176 ~~~L~~ll~~I~~~~~-----------------~d-----~~~iI~iLl~~~~--s~d~~irl~al~WI~~~~~l~~~~l 231 (671)
.++|..+.+.++.... .+ ++.+++.+...+. ..+..+...++..+..++...+..+
T Consensus 641 l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~ 720 (963)
T 2x19_B 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF 720 (963)
T ss_dssp HHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT
T ss_pred HHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc
Confidence 5666667776653110 11 3456665554432 2456788888889999998899999
Q ss_pred ccchHhHHHHHhhhhcC-CcHhHHHHHHHHHHHHHHhcCCCCC-CCChHhHHHHHHHh----c---CCCcHHHHHHHHHH
Q 005891 232 VPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPAD-GFDVGPILSIATRQ----L---SSEWEATRIEALHW 302 (671)
Q Consensus 232 ~pflp~LLp~LL~~Lsd-~~~eIR~~A~~~n~~L~~~i~~~~~-~~dl~~il~~L~~~----L---~~~~~~tRiaaL~W 302 (671)
.||+|.+++.++..... ..+. .......+.+..+.... .-.+..+++.+.+. + ..+...+|.+++..
T Consensus 721 ~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~l 796 (963)
T 2x19_B 721 APMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQL 796 (963)
T ss_dssp GGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHH
Confidence 99999999998886653 2333 22333334332222111 10123333332222 1 23457899999999
Q ss_pred HHHHHhhChhhHh--hh-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----------cchHHHHHHHHHhhccc-
Q 005891 303 ISTLLNRHRTEVL--HF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----------LQHFRQLVVFLVHNFRV- 367 (671)
Q Consensus 303 L~~L~~~~p~~i~--~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~-----------~~~F~~fm~~LL~lf~~- 367 (671)
+..+...+|..+. +. ++.+++.++..|.+++.++...+++.|..+.+. ..++..++..++.-+..
T Consensus 797 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 876 (963)
T 2x19_B 797 LAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQ 876 (963)
T ss_dssp HHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999886 55 888999999999999999999999999998742 23455555555554432
Q ss_pred c-chhhhhHHHHHHHHHhccCChHHHHHHHHHhh
Q 005891 368 D-NSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (671)
Q Consensus 368 d-~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~la~iL 400 (671)
. +..++. ...|++.|... +++.+-.-+.+.|
T Consensus 877 ~~~~~~~~-~~~il~~l~~~-~~~~~~~~l~~~l 908 (963)
T 2x19_B 877 ASRSLMDC-FADILFALNKH-CFSLLSMWIKEAL 908 (963)
T ss_dssp SCGGGHHH-HHHHHHHHHHH-SHHHHHHHHHHHT
T ss_pred CChhHHHH-HHHHHHHHHHH-ChHHHHHHHHHHh
Confidence 1 333332 34455655443 2333333344444
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.34 E-value=3.4e-10 Score=135.53 Aligned_cols=370 Identities=12% Similarity=0.085 Sum_probs=229.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcC-----CchHHHHHH-HHHHHHHHHhhcccc---------
Q 005891 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD-----SDANVQSAA-HLLDRLVKDIVTESD--------- 108 (671)
Q Consensus 44 ~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D-----~d~~Vr~gA-~~LdrllKdIv~e~~--------- 108 (671)
..+.||...|.++..|++.--. ..|+++++.|..+++. +++....++ ..|..+.+++.....
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p---~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~ 191 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMP---DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVR 191 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTT---TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------
T ss_pred CCHHHHHHHHHHHHHHHHHhCc---cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHH
Confidence 4699999999999998874322 2378999999988865 244556666 777777766532100
Q ss_pred ---hhhhhhhHHHHHHhhcC---------------------------------------CCHHHHHHHHHHHHHhhcCCc
Q 005891 109 ---QFSIEEFIPLLRERMNV---------------------------------------LNPYVRQFLVGWITVLDSVPD 146 (671)
Q Consensus 109 ---~f~L~~fIP~L~e~i~~---------------------------------------~np~vR~~alswL~~L~~ip~ 146 (671)
....+.+++.+.+.+.+ .+|.+|..++.++..+...+.
T Consensus 192 ~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~ 271 (963)
T 2x19_B 192 TSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPD 271 (963)
T ss_dssp CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHHHcccc
Confidence 01133333333333322 245556666666666655432
Q ss_pred -hhHHhchHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHHHH----hhcC--CCCChHHHHHHHHHhcCC-----
Q 005891 147 -IDMLGFLPDFLDGLFNM-------LSDSSHEIRQQADSALWEFLQE----IKNS--PSVDYGRMAEILVQRAAS----- 207 (671)
Q Consensus 147 -~~li~~Lp~fL~gLf~l-------L~D~~~eVR~~a~~~L~~ll~~----I~~~--~~~d~~~iI~iLl~~~~s----- 207 (671)
.+...++..++++++.. +.+.+.+.....++.+..+.+. +... ...++..+++.++.++.+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 351 (963)
T 2x19_B 272 AQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYP 351 (963)
T ss_dssp GGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTT
T ss_pred cccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCC
Confidence 22223333444444322 2334556666666777776643 2211 012467888999988875
Q ss_pred CCHHHHHHHHHHHHHHHh-hc----------CcCcccchHhHHHHHhhhhcCCcHh---------------HHHHHHHHH
Q 005891 208 PDEFTRLTAITWINEFVK-LG----------GDQLVPYYADILGAILPCISDKEEK---------------IRVVARETN 261 (671)
Q Consensus 208 ~d~~irl~al~WI~~~~~-l~----------~~~l~pflp~LLp~LL~~Lsd~~~e---------------IR~~A~~~n 261 (671)
.++.+...+++.+..+++ .. ...+.|+++++++.+++.|.+++.+ .|..+.++.
T Consensus 352 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L 431 (963)
T 2x19_B 352 VNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTL 431 (963)
T ss_dssp TTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHH
Confidence 355667677775545555 21 1234688999999999998754321 234444444
Q ss_pred HHHHHhcCCCCCCCChHhHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHH
Q 005891 262 EELRAIKADPADGFDVGPILSIATRQL----SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (671)
Q Consensus 262 ~~L~~~i~~~~~~~dl~~il~~L~~~L----~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~ 337 (671)
..+....++ --+..+++.+.+.+ .+.+|..|++++.+++.+.+++.++..++++.+++.+ ..+.++.+.|+
T Consensus 432 ~~~~~~~~~----~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr 506 (963)
T 2x19_B 432 MYVYEMLGA----ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLA 506 (963)
T ss_dssp HHHHHHHTH----HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHH
T ss_pred HHHHHHccH----HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHH
Confidence 444444331 01244555666666 6778999999999999999999887778888888854 56777789999
Q ss_pred HHHHHHHHHHhh----ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCCh------HHHHHHHHHhhccc-CCh
Q 005891 338 LLVLEVHACIAK----DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGE-ADL 406 (671)
Q Consensus 338 ~~~l~lLa~Is~----~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~------E~Iy~~la~iL~~~-~dl 406 (671)
..++|+++++++ +.+|+..++..++..+.+ +-+..++..-++++|..... +.+...+..++.+. .+.
T Consensus 507 ~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~ 584 (963)
T 2x19_B 507 DTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKT 584 (963)
T ss_dssp HHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCh
Confidence 999999999983 457888899999988854 45567777778888865432 35555555555431 123
Q ss_pred hHHHHHHHHHHHHhccc
Q 005891 407 DFACTMVQALNLILLTS 423 (671)
Q Consensus 407 ~F~~~mVq~Ln~iLLTs 423 (671)
+--..++..+..++-+.
T Consensus 585 ~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 585 SQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 33344455555555443
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.33 E-value=5.6e-11 Score=116.53 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=152.9
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~ 192 (671)
+..+|.|.+.+.+.++.+|..++..+..+.. +..++.|.+++.|+++.||..|..+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 5568888899999999999999999988654 3446666779999999999999888876531
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCC
Q 005891 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (671)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~ 272 (671)
+..++.++..+.++++.+|..|+..+..+. . +..++.+.+.+.|+++++|..|..+...+ ++
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~-- 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIG---D-------ERAVEPLIKALKDEDWFVRIAAAFALGEI----GD-- 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC--
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---c-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC--
Confidence 456788899999999999999999887552 2 45678888889999999999998887665 21
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005891 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (671)
Q Consensus 273 ~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~ 350 (671)
...++.|...+.++++.+|.+|...|..+.. +..++.|.+.+.|+++.||..+.+.|..+..+
T Consensus 142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4678888999999999999999999998832 56778888999999999999999999999854
No 46
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.32 E-value=1.2e-09 Score=122.40 Aligned_cols=385 Identities=14% Similarity=0.083 Sum_probs=250.8
Q ss_pred HHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhh-----hhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCch
Q 005891 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI-----EEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDI 147 (671)
Q Consensus 75 f~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L-----~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~ 147 (671)
++.+.+.+.+.|++++-.| ..+-+++. .+. ..++ .-.||.|.+++.. .++.++..++..|.++.+..+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls---~e~-~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLS---REK-QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHT---CSS-CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhc---CCC-CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4556666777788777666 55555542 111 1122 2358999999974 6799999999999999876554
Q ss_pred hHHhchH-HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHhcCCCCH-----HHHHHHHHHH
Q 005891 148 DMLGFLP-DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDE-----FTRLTAITWI 220 (671)
Q Consensus 148 ~li~~Lp-~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~-~~~d~~~iI~iLl~~~~s~d~-----~irl~al~WI 220 (671)
.-..... ..++.|.++|.+++.+||..|..+|..+...-... ..+--...++.++..+.+++. ..+..+...+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 3222222 24666677999999999999999999887421100 000013457788888877652 3444555555
Q ss_pred HHHHhhc-CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHH
Q 005891 221 NEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEA 299 (671)
Q Consensus 221 ~~~~~l~-~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaa 299 (671)
..++.-. +..-......++|.+...+.+.+++++..|..+...+...-.+....+.-..+++.|.+.+.+.+..++..+
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence 5555432 112223467899999999999999999988877665532110000000013567888999999999999999
Q ss_pred HHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHH------HHHHHHHhhccccchhh
Q 005891 300 LHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR------QLVVFLVHNFRVDNSLL 372 (671)
Q Consensus 300 L~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~------~fm~~LL~lf~~d~~lL 372 (671)
+..++.+..+.+...... -.+.+|.|.+.|++++++|+..++|+|+.|+.+..... .++..|+.++.+...-.
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 999999987765543322 34678888999999999999999999999996433222 25667778887776666
Q ss_pred hhHHHHHHHHHhccCChHH--------HHHHHHHhhcccCChhHHHHHHHHHHHHhccchh---HHHHHHHHHhccCCcc
Q 005891 373 EKRGALIIRRLCVLLDAER--------VYRELSTILEGEADLDFACTMVQALNLILLTSSE---LSELRDLLKKSLVNPA 441 (671)
Q Consensus 373 e~Rg~~IIR~Lc~~L~~E~--------Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~E---l~~lR~~L~~~l~~~~ 441 (671)
+..+...+.+++..-+.|. +...|.+.|. ..|.+.+......|.+||-.++. ...++..+.+ ..
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee----~g 449 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE----CG 449 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHH----cC
Confidence 7777889999988666553 3455666664 47888988999999988865443 2333333332 22
Q ss_pred hHHHHHHHHHhhccChHHHHHHHHHHhhhHHHHHHHHHh
Q 005891 442 GKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSL 480 (671)
Q Consensus 442 ~~~lF~~L~~~w~~n~vs~lslcll~~~y~~a~~l~~~~ 480 (671)
+.. .|-..=.|.- .+-|+.|++||.+|
T Consensus 450 gl~---~ie~Lq~~~n---------~~i~~~A~~iie~y 476 (510)
T 3ul1_B 450 GLD---KIEALQRHEN---------ESVYKASLNLIEKY 476 (510)
T ss_dssp HHH---HHHHGGGCSS---------HHHHHHHHHHHHHH
T ss_pred cHH---HHHHHHcCCC---------HHHHHHHHHHHHHH
Confidence 222 2222212221 13589999999776
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.30 E-value=1.2e-09 Score=122.87 Aligned_cols=347 Identities=13% Similarity=0.054 Sum_probs=232.5
Q ss_pred HHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc----hhhhhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCch
Q 005891 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD----QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDI 147 (671)
Q Consensus 74 If~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~----~f~L~~fIP~L~e~i~-~~np~vR~~alswL~~L~~ip~~ 147 (671)
-++.+.+.+.+.+++++-.| ..+-+++. .+.+ ...-...||.|.+.+. +.++.++..++..|..+.+....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs---~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLS---REKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHT---SSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHc---CCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 35566666777777777655 44444331 1211 1222456899999996 56799999999999999876654
Q ss_pred hHHhch-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHhcCCCCH-----HHHHHHHHHH
Q 005891 148 DMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDE-----FTRLTAITWI 220 (671)
Q Consensus 148 ~li~~L-p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~-~~~d~~~iI~iLl~~~~s~d~-----~irl~al~WI 220 (671)
.-...+ ...++.|..++.+++.+||..|..+|..+...-... ..+--...++.++..+..++. .....+...+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 322221 235666777999999999999999999887421000 000012457788888876652 2344444445
Q ss_pred HHHHhhc-CcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHH
Q 005891 221 NEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEA 299 (671)
Q Consensus 221 ~~~~~l~-~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaa 299 (671)
..++.-. +..-......++|.+...+.+.+++++..|..+...+...-.+....+--..+++.|.+.+.+++...+..|
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 5444322 111223467899999999999999999888877665542110000000013567888899999999999999
Q ss_pred HHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHH------HHHHHHHhhccccchhh
Q 005891 300 LHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR------QLVVFLVHNFRVDNSLL 372 (671)
Q Consensus 300 L~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~------~fm~~LL~lf~~d~~lL 372 (671)
+..|+.+..+.+...... -.+.++.|++.|++++++|+..++|+|+.|+.+..... .++..|+.++.+...-+
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 999999987765543222 34678899999999999999999999999996433322 25667777777776666
Q ss_pred hhHHHHHHHHHhccCChHHH--------HHHHHHhhcccCChhHHHHHHHHHHHHhccch
Q 005891 373 EKRGALIIRRLCVLLDAERV--------YRELSTILEGEADLDFACTMVQALNLILLTSS 424 (671)
Q Consensus 373 e~Rg~~IIR~Lc~~L~~E~I--------y~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~ 424 (671)
+..+...+.++|..-+.|.+ ...|.+.|. ..|.+.+......|.+||-.++
T Consensus 394 ~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 394 QKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhH
Confidence 66677889999887666543 445666664 4788888888899988875443
No 48
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.30 E-value=8.5e-10 Score=134.01 Aligned_cols=333 Identities=13% Similarity=0.046 Sum_probs=218.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc-------------c--
Q 005891 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES-------------D-- 108 (671)
Q Consensus 45 d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~-------------~-- 108 (671)
+..||...|.++..|++.--. ..|+++++.|..+++ +++..+.++ ..|..+.+++..-. .
T Consensus 113 ~~~i~~kl~~~ia~Ia~~~~p---~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l 188 (1049)
T 3m1i_C 113 QKNLINKSDLTLVQILKQEWP---QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSM 188 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 478999999999888875222 458899999998886 455556566 77777777665210 0
Q ss_pred hhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHH-
Q 005891 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQE- 185 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf-~lL~D~~~eVR~~a~~~L~~ll~~- 185 (671)
...++.+++.+...+.. .++.++..++.++..+.+..+.+.+.- +.+++.++ .++. ++++|.+|++||..++..
T Consensus 189 ~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~-~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~ 265 (1049)
T 3m1i_C 189 SKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE-TNILELLSTKFMT--SPDTRAITLKCLTEVSNLK 265 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh-hhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCC
Confidence 11244455555555543 567888888888877655444332110 23344333 2221 455555555554443321
Q ss_pred ------------------------------------------------------------------hhcCC--CCChHHH
Q 005891 186 ------------------------------------------------------------------IKNSP--SVDYGRM 197 (671)
Q Consensus 186 ------------------------------------------------------------------I~~~~--~~d~~~i 197 (671)
+...+ ...+..+
T Consensus 266 ~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 345 (1049)
T 3m1i_C 266 IPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNA 345 (1049)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 11000 0113446
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHh-h-----cCcCcccchHhHHHHHhhhhcCCcH--------------------
Q 005891 198 AEILVQRAASPDEFTRLTAITWINEFVK-L-----GGDQLVPYYADILGAILPCISDKEE-------------------- 251 (671)
Q Consensus 198 I~iLl~~~~s~d~~irl~al~WI~~~~~-l-----~~~~l~pflp~LLp~LL~~Lsd~~~-------------------- 251 (671)
++.++.+...+++++...|++++..+++ + ....+.|+++++++.+++.|.++++
T Consensus 346 l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d 425 (1049)
T 3m1i_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425 (1049)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccch
Confidence 7888888888888999889886666666 1 2234568999999999998865311
Q ss_pred --hHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhHh-hhhhHHHHHHH
Q 005891 252 --KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLL 326 (671)
Q Consensus 252 --eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~--~~~~~tRiaaL~WL~~L~~~~p~~i~-~~l~~l~p~LL 326 (671)
+.|..+.++...+....++ --+..+.+.+.+.+. +.+|..|++++..++.+++++.+... ++++.+++.++
T Consensus 426 ~~~~~~~~~~~L~~l~~~~~~----~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~ 501 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYLTHLNVI----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL 501 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHH----HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHH
Confidence 2355566666555544321 012344556666664 46899999999999999998877654 45888888887
Q ss_pred HhcC-----CCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC
Q 005891 327 KALS-----DPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (671)
Q Consensus 327 ~~Ls-----D~s~eV~~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~ 388 (671)
.... |+.+.|+..++|++++++ .+.+++..++..++..+.+..+-++.++..-++++|...+
T Consensus 502 ~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 502 DLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7432 456667778999999998 3667899999999998887777788888888889988644
No 49
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.29 E-value=2.5e-09 Score=128.37 Aligned_cols=351 Identities=12% Similarity=0.075 Sum_probs=231.7
Q ss_pred HhHhhhHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHh-------c-----chhhhhHHHHHHHHHHhhc---CC--
Q 005891 28 TILQQIVPPVLNSFS-----DQDSRVRYYACEALYNIAKVV-------R-----GDFIIFFNQIFDALCKLSA---DS-- 85 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~-----D~d~rVR~~A~eaL~nI~Kv~-------~-----~~il~~f~eIf~~L~kL~~---D~-- 85 (671)
+++..+++.++.+.. ..+.+|+..|++-+++++... + ....+++.++++.++..+. |.
T Consensus 344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~ 423 (971)
T 2x1g_F 344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSL 423 (971)
T ss_dssp HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 566677777787663 357889999999998887622 1 1234778888888886552 11
Q ss_pred ---c-------hHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCchhH
Q 005891 86 ---D-------ANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-----LNPYVRQFLVGWITVLDSVPDIDM 149 (671)
Q Consensus 86 ---d-------~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~-----~np~vR~~alswL~~L~~ip~~~l 149 (671)
+ .+.|.++ +.+.. +....+...++.+++.+.+.+.. .+|..|..++-.+..+......+.
T Consensus 424 ~~~d~~e~~~f~~~R~~~~~~l~~----~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~ 499 (971)
T 2x1g_F 424 AKWSSDDLECFRCYRQDISDTFMY----CYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE 499 (971)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHH----HHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----
T ss_pred cccCHhHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh
Confidence 1 1344444 44433 33322334577778887777754 789999999999999988777666
Q ss_pred HhchHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 005891 150 LGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (671)
Q Consensus 150 i~~Lp~fL~gLf~lL-~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~ 228 (671)
..++|.+++.+..+. .|+++-||..++.+++++.+.+...+ ..++.+++.++..+ + +.++..|+..+..+++-.+
T Consensus 500 ~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 500 KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp -CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence 788999988444444 27899999999999999999887543 35889999999888 3 6788999999999999888
Q ss_pred cCcccchHhHHHHHhhhhcC--CcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHH----HHHhcCCC--cHHHHHHHH
Q 005891 229 DQLVPYYADILGAILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVGPILSI----ATRQLSSE--WEATRIEAL 300 (671)
Q Consensus 229 ~~l~pflp~LLp~LL~~Lsd--~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~----L~~~L~~~--~~~tRiaaL 300 (671)
..+.||++.++..++..+.. .+.+.+..+.++...+...+......-.+..+++. +.+..... +...+....
T Consensus 576 ~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 655 (971)
T 2x1g_F 576 LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTI 655 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 89999999999999999986 35678888888877777654310001112343333 33333332 333455555
Q ss_pred HHHHHHHhh---C-------------hhhHhhhhhHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhh-----ccchHHHH
Q 005891 301 HWISTLLNR---H-------------RTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACIAK-----DLQHFRQL 357 (671)
Q Consensus 301 ~WL~~L~~~---~-------------p~~i~~~l~~l~p~LL~~LsD--~s~eV~~~~l~lLa~Is~-----~~~~F~~f 357 (671)
.++..|... . ++.+.++.+.++|.+...+.+ .++.|+..+++++++++. -.+|+.++
T Consensus 656 ~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~ 735 (971)
T 2x1g_F 656 FRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDL 735 (971)
T ss_dssp HHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHH
T ss_pred HHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHH
Confidence 555444322 1 234567888899988888754 367999999999999773 24577778
Q ss_pred HHHHHhhccccchhhhhHHHHHHHHHhccCCh
Q 005891 358 VVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (671)
Q Consensus 358 m~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~ 389 (671)
+..++..|.+.+. .+ .--.+..++..++.
T Consensus 736 ~~~l~~~~~~~~~--~~-~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 736 CLFIVASFQTRCC--AP-TLEISKTAIVMFFK 764 (971)
T ss_dssp HHHHHHHCC--CC--HH-HHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcCCc--hH-HHHHHHHHHHHhCC
Confidence 8888877765432 11 11244555555554
No 50
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.29 E-value=3.4e-10 Score=133.11 Aligned_cols=382 Identities=13% Similarity=0.036 Sum_probs=257.4
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhc-c---hhh--hhHHHHHHHHHHhhcCC--chHHHHHH-HHHHHHHHH-hh
Q 005891 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVR-G---DFI--IFFNQIFDALCKLSADS--DANVQSAA-HLLDRLVKD-IV 104 (671)
Q Consensus 35 ~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~-~---~il--~~f~eIf~~L~kL~~D~--d~~Vr~gA-~~LdrllKd-Iv 104 (671)
|++...+..++..+|..|..+|-++++... . ..+ .-..++.+.|.+++.++ +.+++..| +.|..+..+ -+
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 778888888888999988777766653211 0 111 22568899999998777 77777777 777766542 11
Q ss_pred cccchhh-hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh--------HHhc----------------hH-----
Q 005891 105 TESDQFS-IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID--------MLGF----------------LP----- 154 (671)
Q Consensus 105 ~e~~~f~-L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~--------li~~----------------Lp----- 154 (671)
.+ ... -..+||.|.+.+.+.++.+.+.++..+.++..-.+.+ +..| .-
T Consensus 413 k~--~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~ 490 (810)
T 3now_A 413 KE--KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV 490 (810)
T ss_dssp HH--HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHH
T ss_pred HH--HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHH
Confidence 11 122 2468999999999999999999999999998743200 1111 10
Q ss_pred ----HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 005891 155 ----DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (671)
Q Consensus 155 ----~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~ 230 (671)
..++.|..++..++++||..|..+|..+...-.....+--...+|.|+..+.+.++..|..|...|.+++.-....
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~ 570 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh
Confidence 2366677899999999999999999988742111000112457889999999999999999999998887653322
Q ss_pred c-ccc--hHhHHHHHhhhhcCC-cHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 005891 231 L-VPY--YADILGAILPCISDK-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 306 (671)
Q Consensus 231 l-~pf--lp~LLp~LL~~Lsd~-~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L 306 (671)
. .+- ....+|.++..+..+ ....+..|..+...+...-.+....+--...++.|.+.+.+++..+|.+|+..+..+
T Consensus 571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650 (810)
T ss_dssp HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2 111 234678888877743 333333454444433221000000000024567788888888889999999999988
Q ss_pred HhhChhhHhhhh--hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccc----hHH--HHHHHHHhhccccchhhhhHHH
Q 005891 307 LNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQ----HFR--QLVVFLVHNFRVDNSLLEKRGA 377 (671)
Q Consensus 307 ~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-~~~----~F~--~fm~~LL~lf~~d~~lLe~Rg~ 377 (671)
... ++....+. .+.+|.|++.+..++.+++..++|+|+.++. ++. .++ ..+..|.+++.++..-++.++.
T Consensus 651 a~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~ 729 (810)
T 3now_A 651 VMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729 (810)
T ss_dssp TTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred hCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence 763 34444444 3689999999999999999999999999996 222 232 3677888888888778899999
Q ss_pred HHHHHHhccCChH--------HHHHHHHHhhccc--CChhHHHHHHHHHHHHh
Q 005891 378 LIIRRLCVLLDAE--------RVYRELSTILEGE--ADLDFACTMVQALNLIL 420 (671)
Q Consensus 378 ~IIR~Lc~~L~~E--------~Iy~~la~iL~~~--~dl~F~~~mVq~Ln~iL 420 (671)
..+.+++.. +.| .+...|.+++... .+.+++...++.|..++
T Consensus 730 ~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 730 VIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 999999873 332 3455566666543 57889888888887775
No 51
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.28 E-value=2.4e-09 Score=128.52 Aligned_cols=313 Identities=10% Similarity=0.070 Sum_probs=206.2
Q ss_pred HHhHhhhHHHHHhccC--CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHh
Q 005891 27 ETILQQIVPPVLNSFS--DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~--D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdI 103 (671)
.++++.+++ ++..+. |+++.||+.||..+...++...... .+++.+++.|...+ | +.|+..| .++.+++++.
T Consensus 500 ~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 500 KRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp -CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 356777777 666666 7899999999999999887655322 67888999998877 4 6777777 7888888754
Q ss_pred hcccchhhhhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhc-CCchhHHhchHHHHHHHHHhc----CCC--ChHHHHH
Q 005891 104 VTESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNML----SDS--SHEIRQQ 174 (671)
Q Consensus 104 v~e~~~f~L~~fIP~L~e~i~~--~np~vR~~alswL~~L~~-ip~~~li~~Lp~fL~gLf~lL----~D~--~~eVR~~ 174 (671)
-.+.. ..++.++..+.+.+.. .+...|..+++.+..+.. +++.+..+|+..+++.+...+ ..+ +.+-+..
T Consensus 575 ~~~l~-p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~ 653 (971)
T 2x1g_F 575 QLQLK-PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIR 653 (971)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHH
T ss_pred HHhcc-ccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Confidence 33221 2255566666666665 467999999999998765 455778888888888777433 332 3444444
Q ss_pred HHHHHH---HHHHHhhcCCC--------CC-----hHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhcCcCcccchH
Q 005891 175 ADSALW---EFLQEIKNSPS--------VD-----YGRMAEILVQRAAS--PDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (671)
Q Consensus 175 a~~~L~---~ll~~I~~~~~--------~d-----~~~iI~iLl~~~~s--~d~~irl~al~WI~~~~~l~~~~l~pflp 236 (671)
...+++ .+++.++.... .+ .+.+++.+...+.. .++.+...++..++.++...+.++.||+|
T Consensus 654 ~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~ 733 (971)
T 2x1g_F 654 TIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ 733 (971)
T ss_dssp HHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH
T ss_pred HHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH
Confidence 444444 44444432100 11 45677766665532 36788888999999988888888999999
Q ss_pred hHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCC-CChHhHHHH----HHHhcCC-------CcHHHHHHHHHHHH
Q 005891 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADG-FDVGPILSI----ATRQLSS-------EWEATRIEALHWIS 304 (671)
Q Consensus 237 ~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~-~dl~~il~~----L~~~L~~-------~~~~tRiaaL~WL~ 304 (671)
.+++.++..+..... ..+......+.+..+..... -.+..++.. +...+.. +..+++.+.+..+.
T Consensus 734 ~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~ 810 (971)
T 2x1g_F 734 DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLT 810 (971)
T ss_dssp HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHH
Confidence 999999988765321 22334444444444331110 012333332 2222222 25678999999999
Q ss_pred HHHhhChhhHh--hh-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 305 TLLNRHRTEVL--HF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 305 ~L~~~~p~~i~--~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
.+..++|..+. ++ ++.+++..+.+|.-+.+.+...++..|..+.
T Consensus 811 ~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 811 QIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFV 857 (971)
T ss_dssp HHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999987 77 8999999999998777778888888887755
No 52
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.28 E-value=4.1e-09 Score=123.94 Aligned_cols=412 Identities=11% Similarity=0.034 Sum_probs=280.9
Q ss_pred HHHHHHHHhhhhhHH-----h-HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhhcCC
Q 005891 14 EQFLLYADLFFYSET-----I-LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSADS 85 (671)
Q Consensus 14 ~~~~~~~~~~~~~~~-----y-l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv--~~~~il~~f~eIf~~L~kL~~D~ 85 (671)
..+|.+..++.-... + -+..+|+++..++.++..++..|++++.+++.. ++..+... .+ +.|..++.+.
T Consensus 266 ~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~--gv-~~L~~Ll~s~ 342 (810)
T 3now_A 266 RVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQ--GV-DILKRLYHSK 342 (810)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHH--HH-HHHHHHTTCS
T ss_pred HHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHc--Cc-HHHHHHHcCC
Confidence 344666666544322 1 236889999999999999999999999997532 23344432 34 8899999888
Q ss_pred chHHHHHH-HHHHHHHHHhhcc-----cchhhhhhhHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCchhH-HhchHHH
Q 005891 86 DANVQSAA-HLLDRLVKDIVTE-----SDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDM-LGFLPDF 156 (671)
Q Consensus 86 d~~Vr~gA-~~LdrllKdIv~e-----~~~f~L~~fIP~L~e~i~~~--np~vR~~alswL~~L~~ip~~~l-i~~Lp~f 156 (671)
+..+|..| ..|-++-.+.-++ -.+.++..++|.+...+..+ ++++|..+++.|..+..-++... +..-+.+
T Consensus 343 ~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~ 422 (810)
T 3now_A 343 NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKAS 422 (810)
T ss_dssp CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccch
Confidence 88899887 5555543211101 11235778899999999887 89999999999999977665432 2223577
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC-----------------CC--C----C-h---------HHHHHHHHH
Q 005891 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-----------------PS--V----D-Y---------GRMAEILVQ 203 (671)
Q Consensus 157 L~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~-----------------~~--~----d-~---------~~iI~iLl~ 203 (671)
++.|+.++..+++.+...|...|..+...-... +. . + . ...+|.++.
T Consensus 423 Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~ 502 (810)
T 3now_A 423 IHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCA 502 (810)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHH
Confidence 888888998888999999989888887622100 00 0 0 1 147899999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhcCcCccc--chHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCC---hH
Q 005891 204 RAASPDEFTRLTAITWINEFVKLGGDQLVP--YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VG 278 (671)
Q Consensus 204 ~~~s~d~~irl~al~WI~~~~~l~~~~l~p--flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~d---l~ 278 (671)
.+.++++.+|..|...|.++..-. +... .-...+|.++..+....+..|+.|..+...+...... ...+. ..
T Consensus 503 LL~s~s~~vqe~Aa~aL~NLA~d~--~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p-~~~~~~~~~~ 579 (810)
T 3now_A 503 LAKTESHNSQELIARVLNAVCGLK--ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP-EVSFSGQRSL 579 (810)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHTTTHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh-hhhhcchhhh
Confidence 999999999999999998887421 1111 1235678888888888889999998888777643211 00111 23
Q ss_pred hHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHH
Q 005891 279 PILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQ 356 (671)
Q Consensus 279 ~il~~L~~~L~~~-~~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~ 356 (671)
..++.|.+.+.++ ....+..|+..|..|+...++.-... -.+.+|.|...|.++++.|+..++++++.++.++.....
T Consensus 580 ~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 580 DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 4788888888755 45556778888888887754322111 236789999999999999999999999999965544444
Q ss_pred ------HHHHHHhhccccchhhhhHHHHHHHHHhccCC--h------HHHHHHHHHhhcccCChhHHHHHHHHHHHHhcc
Q 005891 357 ------LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD--A------ERVYRELSTILEGEADLDFACTMVQALNLILLT 422 (671)
Q Consensus 357 ------fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~--~------E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLT 422 (671)
.+.-|+.++..+..-.+..+.-.+.+|+..-+ . +.....|...|. ..|.+.-...+-.+.++.-.
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~-s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA-NPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHTT
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC-CCCHHHHHHHHHHHHHHHhC
Confidence 44567777776666566666777888876311 1 234445555554 36777777777888777665
Q ss_pred chhHHHHHHHHHh
Q 005891 423 SSELSELRDLLKK 435 (671)
Q Consensus 423 s~El~~lR~~L~~ 435 (671)
++| .++.+.+
T Consensus 739 s~e---~~~~l~e 748 (810)
T 3now_A 739 GEE---IAKKLFE 748 (810)
T ss_dssp CHH---HHHHHHT
T ss_pred CHH---HHHHHHH
Confidence 553 3455543
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.26 E-value=2.8e-10 Score=113.13 Aligned_cols=237 Identities=15% Similarity=0.105 Sum_probs=171.9
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhh-HHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchh
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIF-FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~-f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f 110 (671)
.+|.++..+.+++..+|..|+.++.++++......... -..+++.|.+++.++++.|+..| ..|..+..+-.......
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 47889999999999999999999999975322111111 12578999999999999999888 66666654211101112
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH-hchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC
Q 005891 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML-GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li-~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
.-...+|.|.+.+.+.++.+|..++..+..+....+..-. -.-...++.|.+++.+++++||..|+.+|..+...-...
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2235799999999999999999999999999864432211 111346778888999999999999999999887421100
Q ss_pred -CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHh
Q 005891 190 -PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (671)
Q Consensus 190 -~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~ 267 (671)
..+--...++.++..+.++++.+|..|+..+..++...+..... .-.++++.+...+.++++++|..|..+...+...
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 00001458899999999999999999999998887633221111 1356789999999999999999999998888765
Q ss_pred cC
Q 005891 268 KA 269 (671)
Q Consensus 268 i~ 269 (671)
..
T Consensus 243 ~~ 244 (252)
T 4hxt_A 243 GW 244 (252)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 54
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.26 E-value=1.9e-09 Score=119.36 Aligned_cols=309 Identities=12% Similarity=0.011 Sum_probs=199.4
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il-~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
..+|+++..+.+++..+|..|+.++.+++........ ..-...++.|.+++.+++..++..+ ..|..+..+-......
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4789999999999999999999999999864222111 1124678999999999999998877 5555543310000001
Q ss_pred hhhhhhHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 110 FSIEEFIPLLRERMNVLNP-YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np-~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
..-...+|.|.+.+.+.++ ..+..++..+..+...++..-.-.-...++.|..++.|++++++..+..+|..+....+.
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 260 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence 1112346777777766544 555567778888876554211111124677888899999999999999999988865432
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc-chHhHHHHHhhhhcC--CcHhHHHHHHHHHHHHH
Q 005891 189 SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISD--KEEKIRVVARETNEELR 265 (671)
Q Consensus 189 ~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p-flp~LLp~LL~~Lsd--~~~eIR~~A~~~n~~L~ 265 (671)
......++|.++..+.++++.+|..|+..+..+..-.+..... .-...+|.++..+.+ ..++++..|..+...+.
T Consensus 261 --~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 261 --QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp --CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred --hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 1235789999999999999999999988888775532111000 123456777777754 34789888887776653
Q ss_pred HhcCCCCCC------CChHhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCCCHHHH
Q 005891 266 AIKADPADG------FDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVV 337 (671)
Q Consensus 266 ~~i~~~~~~------~dl~~il~~L~~~L~~~~-~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s~eV~ 337 (671)
. ..++. +--...++.|.+.+.+++ +..|..++..+..+....... ... -.+++|.|+..|.+++++|+
T Consensus 339 ~---~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~ 414 (529)
T 1jdh_A 339 S---RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQ 414 (529)
T ss_dssp S---SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred c---CCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHH
Confidence 2 11110 000145778888888765 688888887777776543222 222 24689999999999889999
Q ss_pred HHHHHHHHH
Q 005891 338 LLVLEVHAC 346 (671)
Q Consensus 338 ~~~l~lLa~ 346 (671)
..++|.++.
T Consensus 415 ~~a~~~l~n 423 (529)
T 1jdh_A 415 RRTSMGGTQ 423 (529)
T ss_dssp ---------
T ss_pred HHHhcccCc
Confidence 988888776
No 55
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.26 E-value=2.1e-10 Score=111.54 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=152.4
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCC
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~ 191 (671)
-+...|.+.+.+.+.++.+|..++.++..+.. +..++.|.+++.|+++.||..|..+|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 35567888899999999999999999988653 2345666678999999999999888776531
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC
Q 005891 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (671)
Q Consensus 192 ~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~ 271 (671)
+..++.++..+.++++.+|..|+..+..+. . +..++.+.+.+.|+++.+|..|..+...+- +
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG---D-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT----C-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---c-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----C-
Confidence 356788889999999999999999887642 2 457788888899999999999988876652 1
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
...++.|...+.++++.+|.+|+.+|..+. .+..++.|.+.+.|+++.||..+.+.|+++.
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999882 2457788888899999999999999998875
No 56
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.17 E-value=3e-10 Score=112.86 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=174.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc-CCCC
Q 005891 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN-SPSV 192 (671)
Q Consensus 115 fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L-p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~-~~~~ 192 (671)
-+|.|.+.+.+.++.+|..++..+..+....+....... ...++.|.+++.+++.+||..|..+|..+...-.. ...+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 378889999999999999999999999876652222211 24677888899999999999999999888742100 0000
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc-cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCC
Q 005891 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (671)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~-pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~ 271 (671)
--...++.++..+.++++.+|..|+..+..+....+.... -.-.+.+|.+++.+.++++++|..|..+...+...-.+.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 0135789999999999999999999999887753322110 013467899999999999999999988877664211000
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 272 ~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
...+--..+++.|...+.+++..+|..|+..|..+....++..... -.+.++.|++.+.+++++|+..++++|+.++.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 0000013578899999999999999999999999998766644333 34689999999999999999999999999995
No 57
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.12 E-value=2.5e-08 Score=119.88 Aligned_cols=325 Identities=10% Similarity=0.103 Sum_probs=218.9
Q ss_pred hHhhhHHHHHhccC------CCCHHHHHHHHHHHHHHHHHh---c-c--------hhhhhHH-HHHHHHHHhhcCC---c
Q 005891 29 ILQQIVPPVLNSFS------DQDSRVRYYACEALYNIAKVV---R-G--------DFIIFFN-QIFDALCKLSADS---D 86 (671)
Q Consensus 29 yl~~Ii~pvL~~l~------D~d~rVR~~A~eaL~nI~Kv~---~-~--------~il~~f~-eIf~~L~kL~~D~---d 86 (671)
.++.+++.+...++ +++|+.|.+|..++..|+... . + .+.+++. .++|. +.|+ .
T Consensus 396 v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~----l~~~~~~~ 471 (960)
T 1wa5_C 396 VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD----LTSNNIPH 471 (960)
T ss_dssp HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH----HHCSSCSC
T ss_pred HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH----hcCCCCCC
Confidence 33344444444454 789999999999999997431 1 1 1222222 23343 3566 8
Q ss_pred hHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-----------CchhHHhchH
Q 005891 87 ANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV-----------PDIDMLGFLP 154 (671)
Q Consensus 87 ~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~i-----------p~~~li~~Lp 154 (671)
+-||..| ..+.+...++ . ...+..++|.+...+.+.++.||..++..+..+... ....+.+|+|
T Consensus 472 p~vr~~a~~~lg~~~~~~-~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 472 IILRVDAIKYIYTFRNQL-T---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp HHHHHHHHHHHHHTGGGS-C---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred ceehHHHHHHHHHHHhhC-C---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 8999988 7888887754 2 234888999999999999999999999999998764 3456899999
Q ss_pred HHHHHHHHhcCCCC---h--HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc----CCC-CHHHHHHHHHHHHHHH
Q 005891 155 DFLDGLFNMLSDSS---H--EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA----ASP-DEFTRLTAITWINEFV 224 (671)
Q Consensus 155 ~fL~gLf~lL~D~~---~--eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~----~s~-d~~irl~al~WI~~~~ 224 (671)
.+++.|++++.... . .....+.+++..++...+......++.+++.+.... +++ +...+..+++-|..++
T Consensus 548 ~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 99999999987642 1 134567788888888776544344555655554433 333 5567767888888888
Q ss_pred hh-cCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHH--HhcCCCcHHHHHHHHH
Q 005891 225 KL-GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIAT--RQLSSEWEATRIEALH 301 (671)
Q Consensus 225 ~l-~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~--~~L~~~~~~tRiaaL~ 301 (671)
.. .++.+.+|.+.++|.+...+.....+..+-+.+....+++... +-.-.+.++++.+. ..+.... .--....
T Consensus 628 ~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~ 703 (960)
T 1wa5_C 628 NYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA--TIPESIKPLAQPLLAPNVWELKG--NIPAVTR 703 (960)
T ss_dssp HTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS--SCCTTTGGGHHHHTSGGGGCCTT--THHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHcCHHHhcCCC--CchhHHH
Confidence 76 4456778999999999998876655666667777777776652 12224567777777 5555443 2224455
Q ss_pred HHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHhhcccc
Q 005891 302 WISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVD 368 (671)
Q Consensus 302 WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~------~~~~F~~fm~~LL~lf~~d 368 (671)
.+..+....++.+.. ++.++..+-+.++++.++ ..++++++.|.. =.+|+..++..++..+...
T Consensus 704 ~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 704 LLKSFIKTDSSIFPD-LVPVLGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp HHHHHHHHHGGGCSC-SHHHHHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSS
T ss_pred HHHHHHHhChHHHHH-HHHHHHHHHHHhCCCccc--chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 666666555555443 455666566667776544 678888877773 2578888999988887655
No 58
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.11 E-value=4.7e-10 Score=112.37 Aligned_cols=233 Identities=18% Similarity=0.124 Sum_probs=166.9
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhh-hHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~-~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
+-.+.+...+.+.|..+|..||.++.++.......... .-..+++.|.+++.++++.|+..| ..|..+..+-......
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34678888889999999999999998765431111110 112678999999999999999888 6666665411110111
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH-hchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML-GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li-~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
..-...+|.|.+.+.+.++.+|..++..+..+...++.... -.-...++.|.+++.|++.+||..|+.+|..+...-..
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 22234799999999999999999999999999877664412 22234678888899999999999999999988742110
Q ss_pred C-CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc-hHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 189 S-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY-YADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 189 ~-~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pf-lp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
. ...--...++.++..+.++++.+|..|+..+..++...+.....+ -.+.++.+...+.+.++++|..|..+...+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 0 000014578999999999999999999999988875333221111 345889999999999999999998776543
No 59
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.10 E-value=3.1e-09 Score=106.31 Aligned_cols=235 Identities=17% Similarity=0.095 Sum_probs=148.7
Q ss_pred HHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc
Q 005891 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (671)
Q Consensus 74 If~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~ 152 (671)
-|+.+.+++.++++.++..| ..|.+++..--.......-...+|.|.+.+.+.++.+|..++..|..+..-.+..-...
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 36667777778888887777 67755554311111122334678999999999999999999999999986433221111
Q ss_pred h-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC
Q 005891 153 L-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (671)
Q Consensus 153 L-p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~-~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~ 230 (671)
+ ...++.|.+++.+++++||..|+.+|..+...-... ..+--...++.++..+.++++.+|..|+..+..+..-.
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--- 169 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--- 169 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC---
Confidence 1 136777888999999999999999888885311100 00000124444444444444444444444333222110
Q ss_pred cccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 005891 231 LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (671)
Q Consensus 231 l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~ 310 (671)
++.+.. .+ -..+++.|.+.+.+++..+|..|+..|..+....
T Consensus 170 --------------------~~~~~~----------~~--------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 170 --------------------NEQIQA----------VI--------DAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp --------------------HHHHHH----------HH--------HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred --------------------hHHHHH----------HH--------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 000000 00 0245677777777777888888888888887666
Q ss_pred hhhHhhhh-hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 311 RTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 311 p~~i~~~l-~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
++...... .+.+|.|++.+.+.+++|+..++++|+.+++
T Consensus 212 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 212 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 55443333 3589999999999999999999999998763
No 60
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.05 E-value=1.8e-07 Score=113.37 Aligned_cols=347 Identities=14% Similarity=0.110 Sum_probs=221.2
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHh----------------cchhhhhHHHHHHHHHHhhcC-CchHHHHHH
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV----------------RGDFIIFFNQIFDALCKLSAD-SDANVQSAA 93 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~----------------~~~il~~f~eIf~~L~kL~~D-~d~~Vr~gA 93 (671)
+..++-++..++.. ...+..+...+..+.+-+ +..+...++.++..+..++.+ ..+.+...+
T Consensus 137 p~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~ 215 (1023)
T 4hat_C 137 PEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVAT 215 (1023)
T ss_dssp TTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred hHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56778888888654 344555555554443321 112235677888888777743 344454444
Q ss_pred -HHHHHHHHHhhcccchhhhhhhHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCC--ch--h----HHhchHHHHHHH---
Q 005891 94 -HLLDRLVKDIVTESDQFSIEEFIPLLR-ERMNVLNPYVRQFLVGWITVLDSVP--DI--D----MLGFLPDFLDGL--- 160 (671)
Q Consensus 94 -~~LdrllKdIv~e~~~f~L~~fIP~L~-e~i~~~np~vR~~alswL~~L~~ip--~~--~----li~~Lp~fL~gL--- 160 (671)
+.+.+.+..+-- +...-+.+++.+. ..+ .+|..|..++.++..+.+.- +. + +...++.++..+
T Consensus 216 L~~l~s~l~WI~i--~~i~~~~ll~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~ 291 (1023)
T 4hat_C 216 LESLLRYLHWIPY--RYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATS 291 (1023)
T ss_dssp HHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCH--HHhcchhHHHHHHHHHc--CCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 666665553221 1112245788887 665 47899999999999887631 22 1 333444444433
Q ss_pred -----------HHhcCCCChHHHHHHHHHHHHHHHHhhcCCC--CChHHHH----HHHHHhcCCCCHHHHHHHHHHHHHH
Q 005891 161 -----------FNMLSDSSHEIRQQADSALWEFLQEIKNSPS--VDYGRMA----EILVQRAASPDEFTRLTAITWINEF 223 (671)
Q Consensus 161 -----------f~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~--~d~~~iI----~iLl~~~~s~d~~irl~al~WI~~~ 223 (671)
+....+.+.++.+.-+..+..+.+.-..... .++..++ .+|+.+...+|.++-..++++...+
T Consensus 292 i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L 371 (1023)
T 4hat_C 292 VMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNL 371 (1023)
T ss_dssp TCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred hCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 1122334566666656666666554332111 2334444 4888888888999866677755555
Q ss_pred Hh-hc-----CcCcccchHhHHHHHhhhhcCCc------H-------------hHHHHH---HHHHHHHHHhcCCCCCCC
Q 005891 224 VK-LG-----GDQLVPYYADILGAILPCISDKE------E-------------KIRVVA---RETNEELRAIKADPADGF 275 (671)
Q Consensus 224 ~~-l~-----~~~l~pflp~LLp~LL~~Lsd~~------~-------------eIR~~A---~~~n~~L~~~i~~~~~~~ 275 (671)
.+ +. ...+.|++.+++++++..|.+++ + +-+... .++...+..+.++
T Consensus 372 ~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~----- 446 (1023)
T 4hat_C 372 VADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI----- 446 (1023)
T ss_dssp HHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH-----
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH-----
Confidence 54 22 22467889999999999998764 1 111111 1222222222211
Q ss_pred C-hHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChhh-HhhhhhHHHHHHHHhcC-----CCCHHHHHHHHHHHHH
Q 005891 276 D-VGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKALS-----DPSDEVVLLVLEVHAC 346 (671)
Q Consensus 276 d-l~~il~~L~~~L~~--~~~~tRiaaL~WL~~L~~~~p~~-i~~~l~~l~p~LL~~Ls-----D~s~eV~~~~l~lLa~ 346 (671)
+ +..+++.+.+++.+ ++|..|+|++-.++.++++..++ ..++++.++|.|+..+. |+...|+..++|++++
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 1 13344556666654 67999999999999999998765 67999999999999886 4667788899999999
Q ss_pred Hh----hccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccC
Q 005891 347 IA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (671)
Q Consensus 347 Is----~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L 387 (671)
|+ .+.++|.+++..|++.+.++++-++..+.--+++||..-
T Consensus 527 y~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 527 YPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 98 378899999999999997776667877888888888753
No 61
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.01 E-value=4.1e-09 Score=102.64 Aligned_cols=194 Identities=16% Similarity=0.095 Sum_probs=139.1
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhh-hHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~-~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
+...+++...+.++|+.+|..||.++.++++........ .-...++.|.+++.++++.|+..| ..|..+..+--....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 456678888899999999999999999998432111111 112678999999999999999888 667666431100001
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc-hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~-Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
...-...+|.|.+.+.+.++.+|..++..+..+....+...... =...++.|.+++.+++.+||..|+.+|..++..-.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 11123478999999999999999999999999986544332221 13467888889999999999999999999985211
Q ss_pred c-CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005891 188 N-SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFV 224 (671)
Q Consensus 188 ~-~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~ 224 (671)
. ...+--...++.|+..+.++++.+|..|+..+..+.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 0 000012357899999999999999999999887654
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.00 E-value=3.8e-08 Score=108.86 Aligned_cols=313 Identities=15% Similarity=0.107 Sum_probs=197.1
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccc
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~---~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~ 108 (671)
-+|+++..+..+++.+|..|+.++.++++.-. ..+. -...+|.|.+++.++++.++..| .+|..+..+--....
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVY--QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHH--HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 36888889988999999999999999874211 1222 23678999999998899898777 677766542000000
Q ss_pred hhhhhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhc--------CCC--------ChHH
Q 005891 109 QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML--------SDS--------SHEI 171 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~-~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL--------~D~--------~~eV 171 (671)
...-.--||.|.+.+. +.++.++..++..|.++...+.... ......++.|.+++ .++ +.+|
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~-~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH-HHHhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 1112345899999998 7899999999999999987744221 11126777888888 222 4566
Q ss_pred HHHHHHHHHHHHHHhhcCC--CCChHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHhh-----------------
Q 005891 172 RQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAAS------PDEFTRLTAITWINEFVKL----------------- 226 (671)
Q Consensus 172 R~~a~~~L~~ll~~I~~~~--~~d~~~iI~iLl~~~~s------~d~~irl~al~WI~~~~~l----------------- 226 (671)
.+.|..+|..+... .... -.+.+..++.|+..+++ ++..++..|+..+..+...
T Consensus 160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 66888888888753 1100 01223566766665543 3333444444333333200
Q ss_pred -----------------------------------cCcCcccchHhHHHHHhhhhcCC-cHhHHHHHHHHHHHHHHhcCC
Q 005891 227 -----------------------------------GGDQLVPYYADILGAILPCISDK-EEKIRVVARETNEELRAIKAD 270 (671)
Q Consensus 227 -----------------------------------~~~~l~pflp~LLp~LL~~Lsd~-~~eIR~~A~~~n~~L~~~i~~ 270 (671)
.+...+ +-++.++.++..|..+ ++++++.|..+...+..--..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL-YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGG-GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHH-hCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 000111 3466778778877644 588888877665544211000
Q ss_pred CCCC-----CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC------HHHHHH
Q 005891 271 PADG-----FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS------DEVVLL 339 (671)
Q Consensus 271 ~~~~-----~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s------~eV~~~ 339 (671)
.... +.-...++.|.+.+.+++..+|..|...|..+... ++.-.-.-.+.+|.|+..|...+ ++|+..
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 0000 00135678899999999999999999777777664 22222223568999999998763 478889
Q ss_pred HHHHHHHHhhcc
Q 005891 340 VLEVHACIAKDL 351 (671)
Q Consensus 340 ~l~lLa~Is~~~ 351 (671)
++++++.|..++
T Consensus 397 ~l~~l~ni~~~~ 408 (457)
T 1xm9_A 397 ACYTVRNLMASQ 408 (457)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC
Confidence 999999998543
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.98 E-value=3.4e-07 Score=104.30 Aligned_cols=317 Identities=14% Similarity=0.094 Sum_probs=207.4
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHH-hh
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD-IV 104 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~---~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKd-Iv 104 (671)
-+.-+|+++..+...+..++..|+.++.+++..- +..+.. ...+|.|.+++.+++..|+..| .+|..+... --
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~--~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK--LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 3457899999999999999999999999998521 112221 2567999999999999999888 677666541 00
Q ss_pred cccchhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhc-----------------CC
Q 005891 105 TESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML-----------------SD 166 (671)
Q Consensus 105 ~e~~~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL-----------------~D 166 (671)
.......-.--||.|.+.+.. .++.++..++..|..+...+..... ....-++.|.+++ .|
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~-I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME-IVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH-HHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH-HHhccHHHHHHHHhcccccccccccccccccc
Confidence 000111123457888888876 6789999999999999876543211 1123355555444 12
Q ss_pred -CChHHHHHHHHHHHHHHHHhhc--CCCCChHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHhhc----C-----
Q 005891 167 -SSHEIRQQADSALWEFLQEIKN--SPSVDYGRMAEILVQRAA------SPDEFTRLTAITWINEFVKLG----G----- 228 (671)
Q Consensus 167 -~~~eVR~~a~~~L~~ll~~I~~--~~~~d~~~iI~iLl~~~~------s~d~~irl~al~WI~~~~~l~----~----- 228 (671)
++.+|+..|..+|..+...-.+ ..-.+.+.+++.|+..++ ..+...+..|+..|.++..-. +
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 3579999999999888531100 000122345555555443 245556666766666655321 0
Q ss_pred ----------------cCc-ccchHhHHHHHhhhhc-CCcHhHHHHHHHHHHHHHHhcCCCCC----CCChHhHHHHHHH
Q 005891 229 ----------------DQL-VPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKADPAD----GFDVGPILSIATR 286 (671)
Q Consensus 229 ----------------~~l-~pflp~LLp~LL~~Ls-d~~~eIR~~A~~~n~~L~~~i~~~~~----~~dl~~il~~L~~ 286 (671)
..+ .-+-|..++.++..+. ...+++++.|..+...|..--...+. .+.-...++.|.+
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 011 0134677888888885 45689999988887766421000000 0112466899999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCC--------CHHHHHHHHHHHHHHhhc
Q 005891 287 QLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP--------SDEVVLLVLEVHACIAKD 350 (671)
Q Consensus 287 ~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~--------s~eV~~~~l~lLa~Is~~ 350 (671)
.+.+.+...+.+|...|..|........ ..-.+.+|.|+..|.+. +++++..+|++|..|..+
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~ 433 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDARNKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE 433 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChhHHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988754332 22467899999999876 578999999999999853
No 64
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.2e-08 Score=105.12 Aligned_cols=188 Identities=12% Similarity=0.088 Sum_probs=133.4
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHhcch-----hhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhh
Q 005891 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGD-----FIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFS 111 (671)
Q Consensus 37 vL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~-----il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~ 111 (671)
+-.-+.+++|..|..|.+.++.+....... ....|..+.+.+.+.+.|+...|.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~--------------------- 72 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQ--------------------- 72 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHH---------------------
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHH---------------------
Confidence 567889999999999999988876432211 111122333344444455555444
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc------hhHHhchHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHH
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD------IDMLGFLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~------~~li~~Lp~fL~gLf-~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
..++..+..+....+ .....+.+.++++|+ +.++|+.+.+|..+..++..+.+
T Consensus 73 --------------------~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~ 132 (278)
T 4ffb_C 73 --------------------EQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCG 132 (278)
T ss_dssp --------------------HHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 444444444333221 123456777888887 57999999999999898888875
Q ss_pred HhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc---cchHhHHHHHhhhhcCCcHhHHHHHHHHH
Q 005891 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV---PYYADILGAILPCISDKEEKIRVVARETN 261 (671)
Q Consensus 185 ~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~---pflp~LLp~LL~~Lsd~~~eIR~~A~~~n 261 (671)
.. .....+++.++..+.++++.+|..++.|+..++.-.|.... ++++.+++.+.+++.|++++||..|.++.
T Consensus 133 ~~-----~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 133 LD-----TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp TS-----SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred hc-----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 33 34567889999999999999999999999999987655433 36778888999999999999999999999
Q ss_pred HHHHHhcCC
Q 005891 262 EELRAIKAD 270 (671)
Q Consensus 262 ~~L~~~i~~ 270 (671)
..+++.+++
T Consensus 208 ~~ly~~~G~ 216 (278)
T 4ffb_C 208 VEIYKVTGN 216 (278)
T ss_dssp HHHHTC---
T ss_pred HHHHHHhCc
Confidence 999988875
No 65
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.91 E-value=8.8e-07 Score=107.00 Aligned_cols=337 Identities=14% Similarity=0.089 Sum_probs=225.1
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---------chhhhhHHHHHHHHHHhhc-CCc----h-----
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---------GDFIIFFNQIFDALCKLSA-DSD----A----- 87 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~---------~~il~~f~eIf~~L~kL~~-D~d----~----- 87 (671)
...+..+++.++.|+++++..|-..+++-++......+ ....+++..+++++.+-+. |.+ .
T Consensus 327 ~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~e 406 (980)
T 3ibv_A 327 SFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSE 406 (980)
T ss_dssp HHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchh
Confidence 36788899999999999999999999888887654322 1223677888888885442 111 0
Q ss_pred ---HHHHHH-HHHHHHHHHhhccc-chhhhh----hhHHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCchh------H
Q 005891 88 ---NVQSAA-HLLDRLVKDIVTES-DQFSIE----EFIPLLRERMN---VLNPYVRQFLVGWITVLDSVPDID------M 149 (671)
Q Consensus 88 ---~Vr~gA-~~LdrllKdIv~e~-~~f~L~----~fIP~L~e~i~---~~np~vR~~alswL~~L~~ip~~~------l 149 (671)
..++ - ..+. .++|.+.-. ++..++ .+.+.+.+.+. ..+|+.+..++-.++.+....... .
T Consensus 407 d~~~F~e-~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~ 484 (980)
T 3ibv_A 407 EEAEFQE-MRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEV 484 (980)
T ss_dssp THHHHHH-HHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSS
T ss_pred HHHHHHH-HHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcc
Confidence 1111 1 1223 344444321 223344 56666666663 467999999999999987754432 2
Q ss_pred HhchHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH--hcCCCCHHHHHHHHHHHHH
Q 005891 150 LGFLPDFLDGLFNMLS-----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ--RAASPDEFTRLTAITWINE 222 (671)
Q Consensus 150 i~~Lp~fL~gLf~lL~-----D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~--~~~s~d~~irl~al~WI~~ 222 (671)
..++|.+++-+.+++. |+++-||..++.+++++.+-+...+ -.++.++++++. .+.+++..+|..|...+..
T Consensus 485 ~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~ 563 (980)
T 3ibv_A 485 DKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYR 563 (980)
T ss_dssp SCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHhccccccCCChhHHHHHHHHHHH
Confidence 2567777777777654 9999999999999999999997644 347899999999 8888899999999999999
Q ss_pred HHhhcCcCcccchHhHHHHHhhhhcCCc-H----h----------------HHHHHHHHHHHHHHhcCCCCCC--CChHh
Q 005891 223 FVKLGGDQLVPYYADILGAILPCISDKE-E----K----------------IRVVARETNEELRAIKADPADG--FDVGP 279 (671)
Q Consensus 223 ~~~l~~~~l~pflp~LLp~LL~~Lsd~~-~----e----------------IR~~A~~~n~~L~~~i~~~~~~--~dl~~ 279 (671)
|++..+..+.||++.++..+.+.+.... + + -+---.++.+.+....+.+.+. -.++.
T Consensus 564 f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ 643 (980)
T 3ibv_A 564 FVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDS 643 (980)
T ss_dssp HHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999999999999999988887321 1 0 1111234445555544321111 11234
Q ss_pred HHHH----HHHhcCCC----cHHHHH-HHHHHHHHHHhhChhh------HhhhhhHHHHHHHHhcC--CCCHHHHHHHHH
Q 005891 280 ILSI----ATRQLSSE----WEATRI-EALHWISTLLNRHRTE------VLHFLNDIFDTLLKALS--DPSDEVVLLVLE 342 (671)
Q Consensus 280 il~~----L~~~L~~~----~~~tRi-aaL~WL~~L~~~~p~~------i~~~l~~l~p~LL~~Ls--D~s~eV~~~~l~ 342 (671)
+++. +...+... ....++ ..+.|++.++++.+.. +...+.+..+.++..|+ ..+..||..++.
T Consensus 644 ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~ 723 (980)
T 3ibv_A 644 LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRF 723 (980)
T ss_dssp HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4433 33333211 222233 5678999999987532 56677788888887776 567899999999
Q ss_pred HHHHHhh-----ccchHHHHHHHHHhhcc
Q 005891 343 VHACIAK-----DLQHFRQLVVFLVHNFR 366 (671)
Q Consensus 343 lLa~Is~-----~~~~F~~fm~~LL~lf~ 366 (671)
.+.++.. -.++..+++..++..|.
T Consensus 724 ~~~r~i~~lg~~~~p~lp~~i~~ll~~~~ 752 (980)
T 3ibv_A 724 TSGRIINVVGPDMLPKVPQLISILLNSID 752 (980)
T ss_dssp HHHHHTTTTHHHHTTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHccHhHHHHHHHHHHHHHhcCC
Confidence 9999873 13455555555554443
No 66
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.86 E-value=9.9e-07 Score=108.78 Aligned_cols=352 Identities=11% Similarity=0.091 Sum_probs=214.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc---------------
Q 005891 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES--------------- 107 (671)
Q Consensus 44 ~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~--------------- 107 (671)
.+..||...|.++..|++.--. ..|+++++.|..+++.+ +..+.++ ..|..+++|+....
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~~-~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~ 183 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQG-ETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 5799999999999999875222 35788888888877653 3445555 66666666533200
Q ss_pred -------------------------------------------------------c-hhhh---hhhHHHHHHhhcCCCH
Q 005891 108 -------------------------------------------------------D-QFSI---EEFIPLLRERMNVLNP 128 (671)
Q Consensus 108 -------------------------------------------------------~-~f~L---~~fIP~L~e~i~~~np 128 (671)
+ .+.. ..+++.+...+ .++
T Consensus 184 ~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l--~~~ 261 (1204)
T 3a6p_A 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLL--NEQ 261 (1204)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGG--GCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHc--CCH
Confidence 0 0000 12444444333 357
Q ss_pred HHHHHHHHHHHHhhcCCc--hh---HHhch-HHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHHHhhc------
Q 005891 129 YVRQFLVGWITVLDSVPD--ID---MLGFL-PDFLDGLFNML--------SDSSHEIRQQADSALWEFLQEIKN------ 188 (671)
Q Consensus 129 ~vR~~alswL~~L~~ip~--~~---li~~L-p~fL~gLf~lL--------~D~~~eVR~~a~~~L~~ll~~I~~------ 188 (671)
.+|..++++|..+.+... .+ ++..+ +.++..++..+ .|.+.++++..++.+..+...+..
T Consensus 262 ~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~ 341 (1204)
T 3a6p_A 262 ELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADS 341 (1204)
T ss_dssp TTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 889999999999987542 22 44555 56677777664 334567888877777777644432
Q ss_pred --CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc----CcCcccchHhHHHHH---hhhhcCCcHh-------
Q 005891 189 --SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG----GDQLVPYYADILGAI---LPCISDKEEK------- 252 (671)
Q Consensus 189 --~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~----~~~l~pflp~LLp~L---L~~Lsd~~~e------- 252 (671)
....++..+++.++.++++++..+-..++.+...+++-. ...+.+|++++++++ +..+.+++.+
T Consensus 342 ~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~ 421 (1204)
T 3a6p_A 342 DVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEY 421 (1204)
T ss_dssp SCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHH
T ss_pred cccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhh
Confidence 123468999999999999999998888886444455432 234678999999999 7777664311
Q ss_pred -------HHH---H---HHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC-------------------------CCcHH
Q 005891 253 -------IRV---V---ARETNEELRAIKADPADGFDVGPILSIATRQLS-------------------------SEWEA 294 (671)
Q Consensus 253 -------IR~---~---A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~-------------------------~~~~~ 294 (671)
..+ . ..+....+++.+.......-+.-+.+.+.+.+. +..|.
T Consensus 422 ~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 501 (1204)
T 3a6p_A 422 SRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFV 501 (1204)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHH
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHH
Confidence 000 0 011111222221100000001222333433332 22345
Q ss_pred HHHHHHHHHHHHHhhChhhH-hhhhh-HHHHHHHHhc---CCCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHhhc
Q 005891 295 TRIEALHWISTLLNRHRTEV-LHFLN-DIFDTLLKAL---SDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNF 365 (671)
Q Consensus 295 tRiaaL~WL~~L~~~~p~~i-~~~l~-~l~p~LL~~L---sD~s~eV~~~~l~lLa~Is----~~~~~F~~fm~~LL~lf 365 (671)
..++...-+..+.+++.... .++++ .++|.++..+ +.++|.++...+.+|++++ .+.+++.+++..++..+
T Consensus 502 ~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l 581 (1204)
T 3a6p_A 502 QWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSV 581 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhh
Confidence 56666666666666664333 23444 3555555553 5568889999999988887 36778999999999877
Q ss_pred cc------------cchhhhhHHHHHHHHHhccCCh------HHHHHHHHHhhc
Q 005891 366 RV------------DNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILE 401 (671)
Q Consensus 366 ~~------------d~~lLe~Rg~~IIR~Lc~~L~~------E~Iy~~la~iL~ 401 (671)
.+ ..+-+..++..-+++||...+. +.|+..+..++.
T Consensus 582 ~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 582 TFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp HCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred ccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 54 3445677777788888887754 456666666554
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.83 E-value=1.6e-07 Score=112.30 Aligned_cols=265 Identities=11% Similarity=0.147 Sum_probs=201.0
Q ss_pred chHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch--hHHhchHHHHHHHHHh
Q 005891 86 DANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNM 163 (671)
Q Consensus 86 d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~--~li~~Lp~fL~gLf~l 163 (671)
..+++.+|..+..+++.-+... ... ..++..+.+.+.+.++. ..++..+..+....+. ..-+|+=.+++.++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEH-DVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN 103 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSS-SCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccc-ccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 4566777777666655322211 112 46888888888886544 8888888888754432 3455665667777779
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHH
Q 005891 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (671)
Q Consensus 164 L~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~L 242 (671)
.+|....||.+|..+++.+.+.+.. .-...++|.++..+.+. .|..+..|+..+..+++..+..+--.+|.++|.+
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL 180 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcch
Confidence 9999999999999999999998852 34688899999888665 6999999999999999988888888999999999
Q ss_pred hhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-hhh-HhhhhhH
Q 005891 243 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH-RTE-VLHFLND 320 (671)
Q Consensus 243 L~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~-p~~-i~~~l~~ 320 (671)
-.+|.|..+|++.+|.++...+...++ +.|++..++.|.+.+.++.. +- .|++ .|.... -.+ -.|-+.-
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~----n~d~~~~~~~~~~~~~~p~~-~~-~~~~---~l~~~tfv~~v~~~~l~~ 251 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVD----NKDIERFIPSLIQCIADPTE-VP-ETVH---LLGATTFVAEVTPATLSI 251 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCC----CTTTGGGHHHHHHHHHCTTH-HH-HHHH---HHTTCCCCSCCCHHHHHH
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCC----CcchhhhHHHHHHHhcChhh-hH-HHHH---HhhcCeeEeeecchhHHH
Confidence 999999999999999999999888876 46899999999999987643 22 2222 222221 111 1345667
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHh---hccchHHHHHHHHHhhcc
Q 005891 321 IFDTLLKALSDPSDEVVLLVLEVHACIA---KDLQHFRQLVVFLVHNFR 366 (671)
Q Consensus 321 l~p~LL~~LsD~s~eV~~~~l~lLa~Is---~~~~~F~~fm~~LL~lf~ 366 (671)
+.|.|.+.|++++..+.+++.-+...+| ++...-.+|+..|+.-+.
T Consensus 252 ~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~ 300 (986)
T 2iw3_A 252 MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300 (986)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHH
T ss_pred HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHH
Confidence 9999999999999999999999988888 465566666666665554
No 68
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.80 E-value=3.1e-08 Score=102.11 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=141.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCc----hhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC
Q 005891 116 IPLLRERMNVLNPYVRQFLVGWITVLDS-VPD----IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (671)
Q Consensus 116 IP~L~e~i~~~np~vR~~alswL~~L~~-ip~----~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~ 190 (671)
+| |.+++.+.+|..|.-+++.+..+.. .+. .+....+-.+.+.+.+++.|+|..|...+.+++..+++..+...
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 6799999999999999999876543 322 22333455556667789999999999999998888886543100
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHh-hhhcCCcHhHHHHHHHHHHHHHHhcC
Q 005891 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL-PCISDKEEKIRVVARETNEELRAIKA 269 (671)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL-~~Lsd~~~eIR~~A~~~n~~L~~~i~ 269 (671)
..+....++.+.++|.++ +++++..+.+|..|.++...++....
T Consensus 91 -----------------------------------~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~ 135 (278)
T 4ffb_C 91 -----------------------------------LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT 135 (278)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred -----------------------------------cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC
Confidence 000011234667777776 46899999999988887766665432
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH---hhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005891 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV---LHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (671)
Q Consensus 270 ~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i---~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~ 346 (671)
....+++.+...+.+.+..+|.+++.||..+...++... .+.++.+++.+.++|+|++++||..+..++..
T Consensus 136 ------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 136 ------SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp ------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 246788888899999999999999999999998865543 34567788889999999999999999999887
Q ss_pred Hh
Q 005891 347 IA 348 (671)
Q Consensus 347 Is 348 (671)
+-
T Consensus 210 ly 211 (278)
T 4ffb_C 210 IY 211 (278)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 69
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.78 E-value=1.4e-07 Score=91.73 Aligned_cols=193 Identities=19% Similarity=0.123 Sum_probs=137.8
Q ss_pred HHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 005891 72 NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (671)
Q Consensus 72 ~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li 150 (671)
....+.|.+++.++++.|+..| ..|..+...-......+.-...+|.|.+.+.+.++.+|..++..+..+..-.+....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3557788899999999999888 677776531111011222346799999999999999999999999998754432211
Q ss_pred hch-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 005891 151 GFL-PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (671)
Q Consensus 151 ~~L-p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~-~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~ 228 (671)
..+ ...++.|.+++.+++++||..|+.+|..+...-.... .+--...++.++..+.++++.+|..|+..+..++...+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 111 2356677779999999999999999998874111000 00024578999999999999999999999998887533
Q ss_pred cCcc-cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 229 DQLV-PYYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 229 ~~l~-pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
.... -.-...++.+...+.+.++++|+.|..+...+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2211 12346788999999999999999998887665
No 70
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.75 E-value=7.2e-05 Score=90.76 Aligned_cols=296 Identities=9% Similarity=0.030 Sum_probs=195.1
Q ss_pred hHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHh------cchhhhhHHHHHHHHHHhhcCC--------------
Q 005891 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVV------RGDFIIFFNQIFDALCKLSADS-------------- 85 (671)
Q Consensus 26 ~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~------~~~il~~f~eIf~~L~kL~~D~-------------- 85 (671)
..+++..+++.++.+...+|..|+..|++-++.+++.. .....+++.++++.+...+.-+
T Consensus 338 ~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~ 417 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIV 417 (1049)
T ss_dssp GHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEE
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcch
Confidence 35667778888999888889999999999998887722 2233467788888877544211
Q ss_pred -----ch---HHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCchhH-Hhch
Q 005891 86 -----DA---NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN--VLNPYVRQFLVGWITVLDSVPDIDM-LGFL 153 (671)
Q Consensus 86 -----d~---~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~--~~np~vR~~alswL~~L~~ip~~~l-i~~L 153 (671)
|. +.+.++ +.|+.+.. +. +...++.+.+.+.+.+. ..+|..|..++-.++.+....+... -.++
T Consensus 418 r~~~~d~d~~~~~~~~~~~L~~l~~-~~---~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l 493 (1049)
T 3m1i_C 418 REFVKESDTIQLYKSEREVLVYLTH-LN---VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV 493 (1049)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHH-HC---HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHc-cC---HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH
Confidence 10 223333 66666653 22 23346777777777775 3789999999999998866544443 3457
Q ss_pred HHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 005891 154 PDFLDGLFNMLS-----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (671)
Q Consensus 154 p~fL~gLf~lL~-----D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~ 228 (671)
|.+++.|..+.. |+++-||..++.+++++.+.+...+ ..++.+++.++..+.++++.+|..|+..+..|++-++
T Consensus 494 ~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 494 VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 888777766432 5667778778899999988776532 2378899999999999999999999999999999877
Q ss_pred cCcc--------cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCC-CCChHhHHHHHHHhcC--------CC
Q 005891 229 DQLV--------PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD-GFDVGPILSIATRQLS--------SE 291 (671)
Q Consensus 229 ~~l~--------pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~-~~dl~~il~~L~~~L~--------~~ 291 (671)
..+. ||++.++..+...+...+.+-.....++...+....++... .-.++.+++.+.+.+. +.
T Consensus 573 ~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 652 (1049)
T 3m1i_C 573 YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANP 652 (1049)
T ss_dssp HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCG
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 6665 99999999999988876555555555666665554431000 0012333333222221 00
Q ss_pred ----cHH-HH--HHHHHHHHHHHhhChhhHhhhhhHHHHHHH
Q 005891 292 ----WEA-TR--IEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (671)
Q Consensus 292 ----~~~-tR--iaaL~WL~~L~~~~p~~i~~~l~~l~p~LL 326 (671)
+.. .+ ...+.-+..+....++++.++.+.+++.++
T Consensus 653 ~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l 694 (1049)
T 3m1i_C 653 TLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNML 694 (1049)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111 11 122344556667777787777777666554
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.71 E-value=5.3e-07 Score=100.01 Aligned_cols=313 Identities=12% Similarity=0.101 Sum_probs=196.2
Q ss_pred hhHHHHHhccCCCC------------HHHHHHHHHHHHHHHHHhcc--------hhhhhHHHH---HHHHHHhhcCCc--
Q 005891 32 QIVPPVLNSFSDQD------------SRVRYYACEALYNIAKVVRG--------DFIIFFNQI---FDALCKLSADSD-- 86 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d------------~rVR~~A~eaL~nI~Kv~~~--------~il~~f~eI---f~~L~kL~~D~d-- 86 (671)
-.+|.++.++.+.+ ..+|..|+.++.||+..-.+ .++...+.+ .+.+.+++..++
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 36778888887543 69999999999999853221 112111111 122334343221
Q ss_pred hH-----HH--------HHHHHHHHHH-----HHhhcccchhhhhhhHHHHHHhhc-----------CCCHHHHHHHHHH
Q 005891 87 AN-----VQ--------SAAHLLDRLV-----KDIVTESDQFSIEEFIPLLRERMN-----------VLNPYVRQFLVGW 137 (671)
Q Consensus 87 ~~-----Vr--------~gA~~Ldrll-----KdIv~e~~~f~L~~fIP~L~e~i~-----------~~np~vR~~alsw 137 (671)
.+ |+ +|+.+|.++. ++.+.+. -.+|.|...+. ..++.++..++..
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~------G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~a 223 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL------GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA 223 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHT------THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHC------CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHH
Confidence 11 43 2334454332 2223222 23444444442 1357889999999
Q ss_pred HHHhhcCCchh--HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--hhcCCCCChHHHHHHHHHh-cCCCCHHH
Q 005891 138 ITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE--IKNSPSVDYGRMAEILVQR-AASPDEFT 212 (671)
Q Consensus 138 L~~L~~ip~~~--li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~--I~~~~~~d~~~iI~iLl~~-~~s~d~~i 212 (671)
|.++..-.+.. .+.-....++.|.++|..++++|+..|+.+|..+... -.+...+--...||.|+.. ..+.++.+
T Consensus 224 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v 303 (458)
T 3nmz_A 224 LTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 303 (458)
T ss_dssp HHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH
T ss_pred HHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH
Confidence 99998654422 2222456678888899999999999999998887531 0000000013467888886 45668888
Q ss_pred HHHHHHHHHHHHhhcCcCcccc--hHhHHHHHhhhhcCCcH----hHHHHHHHHHHHHHHhcCCCCCC---CChHhHHHH
Q 005891 213 RLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEE----KIRVVARETNEELRAIKADPADG---FDVGPILSI 283 (671)
Q Consensus 213 rl~al~WI~~~~~l~~~~l~pf--lp~LLp~LL~~Lsd~~~----eIR~~A~~~n~~L~~~i~~~~~~---~dl~~il~~ 283 (671)
+..|+..+.++....++.-..+ -...+|.+...+.+..+ ++++.|..+...+...+....+. +--...++.
T Consensus 304 ~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~ 383 (458)
T 3nmz_A 304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383 (458)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence 8888887777776332111111 25678888888876543 47777776666655432111110 001246788
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005891 284 ATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (671)
Q Consensus 284 L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~ 350 (671)
|.+.+.+.+..++..|...|..+..+.++...... .+.+|.|+..|...++.++..++++|..++.+
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999988889999999999999876665544333 46899999999999999999999999999953
No 72
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.70 E-value=2.1e-06 Score=88.41 Aligned_cols=189 Identities=13% Similarity=0.149 Sum_probs=127.5
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhh
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~ 111 (671)
+-+-+...+-.+|++-|..|++.|.........+.....+-+|.-+.--+.|++.+|-..+ +.|..++.-....
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~----- 121 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT----- 121 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc-----
Confidence 4455566777889999999999887755433333333333333333222235555554444 3333322211110
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc-hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~-Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~ 190 (671)
+-.+..| ...|+|.|..=++|+...||..+.+++..+.+..
T Consensus 122 ----------------------------------~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---- 163 (266)
T 2of3_A 122 ----------------------------------ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---- 163 (266)
T ss_dssp ----------------------------------TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH----
T ss_pred ----------------------------------cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC----
Confidence 0012222 2344455555779999999999988887776543
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHH---HHHhhhhcCCcHhHHHHHHHHHHHHHHh
Q 005891 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADIL---GAILPCISDKEEKIRVVARETNEELRAI 267 (671)
Q Consensus 191 ~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LL---p~LL~~Lsd~~~eIR~~A~~~n~~L~~~ 267 (671)
-...+.+++.+.+.++++.+|.+++.|+..+++..|.. | .+.+ |.+-++++|++.+||++|..+..++.+.
T Consensus 164 --~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 164 --GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp --CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999988765 2 5667 9999999999999999999999998888
Q ss_pred cCC
Q 005891 268 KAD 270 (671)
Q Consensus 268 i~~ 270 (671)
+++
T Consensus 238 ~Gd 240 (266)
T 2of3_A 238 EGD 240 (266)
T ss_dssp HTT
T ss_pred hhH
Confidence 775
No 73
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.63 E-value=5.9e-06 Score=100.26 Aligned_cols=331 Identities=10% Similarity=0.032 Sum_probs=206.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhccc----c-----------
Q 005891 44 QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES----D----------- 108 (671)
Q Consensus 44 ~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~----~----------- 108 (671)
.++.++.-.|.++..|+|..-++ .|++.++.+..+.+.++..+..+-..|..+.+++..-. +
T Consensus 124 ~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L 200 (1073)
T 3gjx_A 124 KEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSM 200 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 46788888899988888753222 36788888887776555555555467777777654310 0
Q ss_pred hhhhhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHH-
Q 005891 109 QFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL-FNMLSDSSHEIRQQADSALWEFLQE- 185 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~-~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gL-f~lL~D~~~eVR~~a~~~L~~ll~~- 185 (671)
....+.+++.+.+.+. ..++.+...++..+..+.+..+.+.+.- +.+++.| |++++ ++++|.+|++||..++..
T Consensus 201 ~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~-~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 201 CNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFE-TKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp HHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS-SSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhcc-chHHHHHHHHhcC--ChHHHHHHHHHHHHHHhcc
Confidence 1124556666666664 4688888889999998888777664432 4567766 67775 467999999998887753
Q ss_pred hhc--------------------------------CC---------------------------CCC----hHHHHHHHH
Q 005891 186 IKN--------------------------------SP---------------------------SVD----YGRMAEILV 202 (671)
Q Consensus 186 I~~--------------------------------~~---------------------------~~d----~~~iI~iLl 202 (671)
+++ .. ..+ +...+.+++
T Consensus 278 ~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll 357 (1073)
T 3gjx_A 278 VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYML 357 (1073)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 110 00 001 111334456
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHh-hc---C----c-----------------CcccchHhHHHHHhhhhcCCcH------
Q 005891 203 QRAASPDEFTRLTAITWINEFVK-LG---G----D-----------------QLVPYYADILGAILPCISDKEE------ 251 (671)
Q Consensus 203 ~~~~s~d~~irl~al~WI~~~~~-l~---~----~-----------------~l~pflp~LLp~LL~~Lsd~~~------ 251 (671)
.+...+|.++-..++.+...+.+ +. + . .+.|++.++..++...|..+++
T Consensus 358 ~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~ 437 (1073)
T 3gjx_A 358 LVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVEN 437 (1073)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEEC
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCc
Confidence 66666676665555553323332 11 1 0 1456677778888888875431
Q ss_pred ----------------hHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChhh
Q 005891 252 ----------------KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTE 313 (671)
Q Consensus 252 ----------------eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~--~~~~tRiaaL~WL~~L~~~~p~~ 313 (671)
+.++.-.++...+..+..+ --+..+++.+.+++.+ ++|..+++++-.++.++....++
T Consensus 438 e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~----~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~ 513 (1073)
T 3gjx_A 438 DQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYV----DTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEE 513 (1073)
T ss_dssp SSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHH
T ss_pred ccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcc
Confidence 0112222222222111110 0012344455555543 56999999999999998666544
Q ss_pred H-hhhhhHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHh----hccchHHHHHHHHHhhccccchhhhhHHHHHHHHH
Q 005891 314 V-LHFLNDIFDTLLKALSDP-----SDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRL 383 (671)
Q Consensus 314 i-~~~l~~l~p~LL~~LsD~-----s~eV~~~~l~lLa~Is----~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~L 383 (671)
. .++++.+++.|+.....+ .+.|+...|+++++++ .+.+||+.++..|++.+.++++-++..+..-+.++
T Consensus 514 ~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i 593 (1073)
T 3gjx_A 514 DEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKI 593 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3 478999999999877544 4567778899999998 47889999999999998877666666555444444
Q ss_pred h
Q 005891 384 C 384 (671)
Q Consensus 384 c 384 (671)
|
T Consensus 594 ~ 594 (1073)
T 3gjx_A 594 A 594 (1073)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.63 E-value=1.5e-06 Score=95.99 Aligned_cols=310 Identities=12% Similarity=0.077 Sum_probs=198.8
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHH---hcchhhhhHHHHHHHHHHhhc-CCchHHHHHH-HHHHHHHHHhhc
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv---~~~~il~~f~eIf~~L~kL~~-D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
...+|+++..+.+++..++..|+.+|.|++.. .+..+.. ...+|.|.+++. ++++.++..| .+|..+..+ .
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~--~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~ 118 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR--QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--D 118 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH--TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--S
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--H
Confidence 34789999999999999999999999999852 1112221 255888898888 7788888777 778777664 2
Q ss_pred ccchhhhhhhHHHHHHhhc--------C--------CCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCC-
Q 005891 106 ESDQFSIEEFIPLLRERMN--------V--------LNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD- 166 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~--------~--------~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D- 166 (671)
+....-++..+|.|.+.+. + .++.+...++..+.++...+. .-.... +..++.|..++.+
T Consensus 119 ~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~-~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHH-HHHHHTTSTTHHHHHHHHHHHH
T ss_pred HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHH-HHHHHHHcCCCHHHHHHHHHhh
Confidence 2212223467888888882 2 245667799999999987632 211111 2345555555542
Q ss_pred -----CChHHHHHHHHHHHHHHH----------------------------Hhhc-------------------CC-CCC
Q 005891 167 -----SSHEIRQQADSALWEFLQ----------------------------EIKN-------------------SP-SVD 193 (671)
Q Consensus 167 -----~~~eVR~~a~~~L~~ll~----------------------------~I~~-------------------~~-~~d 193 (671)
++..+...|...|..+.. .++. .+ ..+
T Consensus 198 ~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (457)
T 1xm9_A 198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277 (457)
T ss_dssp HHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGG
T ss_pred ccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHH
Confidence 444455444444444320 0000 00 000
Q ss_pred ---hHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhcCc---Cc-ccch--HhHHHHHhhhhcCCcHhHHHHHHHHHHH
Q 005891 194 ---YGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGD---QL-VPYY--ADILGAILPCISDKEEKIRVVARETNEE 263 (671)
Q Consensus 194 ---~~~iI~iLl~~~~s~-d~~irl~al~WI~~~~~l~~~---~l-~pfl--p~LLp~LL~~Lsd~~~eIR~~A~~~n~~ 263 (671)
-...++.++..+.+. ++.++..|+..+..++.-.+. .+ ...+ .+.+|.+...+.+.+++++..|..+...
T Consensus 278 ~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~n 357 (457)
T 1xm9_A 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357 (457)
T ss_dssp GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHH
Confidence 134566666666543 578888788877776643221 11 0011 3678899999999999999999888777
Q ss_pred HHHhcCCCCCCCC--hHhHHHHHHHhcCCCc------HHHHHHHHHHHHHHHhhChhhHhhh-hhHHHHHHHHhcCCC-C
Q 005891 264 LRAIKADPADGFD--VGPILSIATRQLSSEW------EATRIEALHWISTLLNRHRTEVLHF-LNDIFDTLLKALSDP-S 333 (671)
Q Consensus 264 L~~~i~~~~~~~d--l~~il~~L~~~L~~~~------~~tRiaaL~WL~~L~~~~p~~i~~~-l~~l~p~LL~~LsD~-s 333 (671)
+..-- ...+ -...++.|.+.|.+.+ ..+..+++..+..+..+.++..... -.+.+|.|...++.. +
T Consensus 358 ls~~~----~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~ 433 (457)
T 1xm9_A 358 MSRHP----LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSAS 433 (457)
T ss_dssp HHTSG----GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTC
T ss_pred HhcCH----HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCc
Confidence 65311 1110 1356777888887642 3567788888988887776543322 236889999999888 8
Q ss_pred HHHHHHHHHHHHHHhh
Q 005891 334 DEVVLLVLEVHACIAK 349 (671)
Q Consensus 334 ~eV~~~~l~lLa~Is~ 349 (671)
++|+..++++|..|..
T Consensus 434 ~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 434 PKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998874
No 75
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.56 E-value=1.4e-06 Score=89.67 Aligned_cols=198 Identities=14% Similarity=0.083 Sum_probs=143.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC---cCcccc-hHhH
Q 005891 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVPY-YADI 238 (671)
Q Consensus 163 lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~---~~l~pf-lp~L 238 (671)
.|-..+..-|.++.+.|...+..........++-++.++.-++.+++..+-..+++.+..++.... ..+.+| ...+
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 344455566666655555555432210001234456666667778899999999999998876543 335556 4789
Q ss_pred HHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh
Q 005891 239 LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 318 (671)
Q Consensus 239 Lp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l 318 (671)
+|.++.-++|+.+.+|+.+.++...+..+.. ...+.+.+.+.+.+.|+.+|+.|+.|+..+.+.++.. +
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~-- 202 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--P-- 202 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--G--
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--c--
Confidence 9999999999999999999999877776643 4678899999999999999999999999999987665 2
Q ss_pred hHHH---HHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHhhccccchhhhhH
Q 005891 319 NDIF---DTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKR 375 (671)
Q Consensus 319 ~~l~---p~LL~~LsD~s~eV~~~~l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~R 375 (671)
...+ |.+.+.++|++.+||..|+.++..+-. ++..+ +.+. ++=..++.++++|
T Consensus 203 ~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~-k~lg---~L~~~~~~~l~er 260 (266)
T 2of3_A 203 LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW-KAAG---RMADKDKSLVEER 260 (266)
T ss_dssp GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH-HHHC---CCCHHHHHHHHHH
T ss_pred cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH-HHHh---cCCHHHHHHHHHH
Confidence 4567 999999999999999999998877652 34433 3332 2224456666665
No 76
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.55 E-value=2.2e-06 Score=89.80 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=131.7
Q ss_pred hhHHHHHh-ccCCCCHHHHHHHHHHHHHHHHH---hcchhhhhHHHHHHHHHHhhc-CCchHHHHHH-HHHHHHHHHhhc
Q 005891 32 QIVPPVLN-SFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 32 ~Ii~pvL~-~l~D~d~rVR~~A~eaL~nI~Kv---~~~~il~~f~eIf~~L~kL~~-D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
-.+|+++. ++.+++..||..|+.++.||+.. ++..+... ..++.|.+++. +++..||..| .+|..++..-..
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL--GALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence 46789999 99999999999999999999853 22233322 57888888886 5678888777 778887652211
Q ss_pred ccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchH--HHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 005891 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp--~fL~gLf~lL~D~~~eVR~~a~~~L~~ll 183 (671)
....|.-...+|.|...+++.++.+|..++..|..+....+ +...++- .+++.|+.+|..++.+||..|..+|..++
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 11133334679999999999999999999999999876533 3333332 36788888999999999999999999988
Q ss_pred HHhhc------CCCCChHHHHHHHHHhcCCCC--HHHHHHHHHHHHHH
Q 005891 184 QEIKN------SPSVDYGRMAEILVQRAASPD--EFTRLTAITWINEF 223 (671)
Q Consensus 184 ~~I~~------~~~~d~~~iI~iLl~~~~s~d--~~irl~al~WI~~~ 223 (671)
..-.. .....+..+++-.++.++..+ .++...|...|..+
T Consensus 238 ~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 238 TDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp TTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 65221 011235556655566666443 45555566655443
No 77
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.52 E-value=2.6e-05 Score=88.81 Aligned_cols=312 Identities=14% Similarity=0.091 Sum_probs=202.8
Q ss_pred hhHHHHHhccCCCCHHHHHHHHHHHHHHHHH----hcchhhhhHHHHHHHHHHhhcC-CchHHHHHH-HHHHHHHHHhhc
Q 005891 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKV----VRGDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv----~~~~il~~f~eIf~~L~kL~~D-~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
-.+|+++..|..++..|+..|+.+|.||+.. .+..+... ..++.|.+++.+ .+..++..| .+|-.+.. ..
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~--GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~--~~ 165 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC--DGVPALVRLLRKARDMDLTEVITGTLWNLSS--HD 165 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT--THHHHHHHHHHHCCSHHHHHHHHHHHHHHTT--SG
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc--CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cc
Confidence 3679999999999999999999999999852 22233322 568888888875 567776665 56665543 11
Q ss_pred ccchhhhhhhHHHHHHhh------------------cCCCHHHHHHHHHHHHHhhcCCch--hHHhchHHHHHHHHHhc-
Q 005891 106 ESDQFSIEEFIPLLRERM------------------NVLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNML- 164 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i------------------~~~np~vR~~alswL~~L~~ip~~--~li~~Lp~fL~gLf~lL- 164 (671)
+....-+..-+|.|.+.+ ...++.|+..+...|.++....+. ..+.-.+-..+.|..++
T Consensus 166 ~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~ 245 (584)
T 3l6x_A 166 SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ 245 (584)
T ss_dssp GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 111111233467777655 123689999999999999876532 22221222333343333
Q ss_pred -----CCCChHHHHHHHHHHHHHHHHh----hc-------------------CCCCC---hHHHHHHHHHhcC-CCCHHH
Q 005891 165 -----SDSSHEIRQQADSALWEFLQEI----KN-------------------SPSVD---YGRMAEILVQRAA-SPDEFT 212 (671)
Q Consensus 165 -----~D~~~eVR~~a~~~L~~ll~~I----~~-------------------~~~~d---~~~iI~iLl~~~~-s~d~~i 212 (671)
.+++..+...|.-+|..+.... .. ...+. -...++.++..++ +.++.+
T Consensus 246 ~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v 325 (584)
T 3l6x_A 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325 (584)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred HhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHH
Confidence 3455555555555565544221 10 00011 1356777777774 457889
Q ss_pred HHHHHHHHHHHHhhcC---cCcccc--hHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHh
Q 005891 213 RLTAITWINEFVKLGG---DQLVPY--YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 287 (671)
Q Consensus 213 rl~al~WI~~~~~l~~---~~l~pf--lp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~ 287 (671)
+..|+..|.+++.-.. ..+... -...+|.|...|...+++++..|..+...+...... ...+ -...++.|.+.
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~-~~~I-~~g~ip~LV~L 403 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN-KELI-GKHAIPNLVKN 403 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC-HHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH-HHHH-HhCCHHHHHHH
Confidence 9989888888764211 111001 246689999999999999999998887776543210 0011 14677888888
Q ss_pred cCCC--------cHHHHHHHHHHHHHHHhhChhhHhhhh-hHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhh
Q 005891 288 LSSE--------WEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDP--SDEVVLLVLEVHACIAK 349 (671)
Q Consensus 288 L~~~--------~~~tRiaaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~--s~eV~~~~l~lLa~Is~ 349 (671)
|.+. +..++..|+..|..+..+.++...... .+.+|.|...|.+. ++.++..|+++|+.+..
T Consensus 404 L~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred hcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 8765 467888888888888877766554333 36899999999886 89999999999999984
No 78
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.51 E-value=3.6e-05 Score=93.36 Aligned_cols=354 Identities=8% Similarity=0.017 Sum_probs=225.5
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHhc------chhhhhHHHHHHHHHHhhcCCc---------h----------H
Q 005891 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVR------GDFIIFFNQIFDALCKLSADSD---------A----------N 88 (671)
Q Consensus 34 i~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~------~~il~~f~eIf~~L~kL~~D~d---------~----------~ 88 (671)
+.-++.|-..+|.++=..+++--|.++...- ....+++.++.+.+.+-+.=++ . +
T Consensus 346 l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d 425 (1023)
T 4hat_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESD 425 (1023)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGG
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchH
Confidence 3466777788899998888888888875422 1234667788888886543221 0 1
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCchh-HHhchHHHHHHHHHhcC
Q 005891 89 VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLS 165 (671)
Q Consensus 89 Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~--~np~vR~~alswL~~L~~ip~~~-li~~Lp~fL~gLf~lL~ 165 (671)
-++.=......+..+..-.+...+..++|.+.+.+.. .+|+.|..++-+++.+...+..+ ..+++|.+++.|+.++.
T Consensus 426 ~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~ 505 (1023)
T 4hat_C 426 TIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCV 505 (1023)
T ss_dssp GHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhh
Confidence 0000001111111111111233467788888887764 68999999999999988776654 77999999999999886
Q ss_pred -----CCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCc--------c
Q 005891 166 -----DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL--------V 232 (671)
Q Consensus 166 -----D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l--------~ 232 (671)
|+..-||..++-+++++.+-+..++.. ++.+++.+++.+.++++.++..|+..+..+++-++..+ -
T Consensus 506 ~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 566778888889999999988754332 89999999999998899999999999999998766554 5
Q ss_pred cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCC-ChHhHHHHHHHhc--------------CCCcHHHHH
Q 005891 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGF-DVGPILSIATRQL--------------SSEWEATRI 297 (671)
Q Consensus 233 pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~-dl~~il~~L~~~L--------------~~~~~~tRi 297 (671)
||++.++..+......-+++-+..+.++.+.+.+..+...... -++.+++.+.+.+ .++....++
T Consensus 585 p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l 664 (1023)
T 4hat_C 585 PFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII 664 (1023)
T ss_dssp CHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHH
Confidence 8999999999998887777777777777777776654211000 0111221111111 111112233
Q ss_pred HH-HHHHHHHHhhChhhHhhhhhHHHHHHHHhcC-----------------CCCHHHH------HHHHHHHHHHhhc---
Q 005891 298 EA-LHWISTLLNRHRTEVLHFLNDIFDTLLKALS-----------------DPSDEVV------LLVLEVHACIAKD--- 350 (671)
Q Consensus 298 aa-L~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls-----------------D~s~eV~------~~~l~lLa~Is~~--- 350 (671)
.. ++-+..+....+..+.+++..++|.+++... .+.+.|| +..++++..+.++
T Consensus 665 ~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~ 744 (1023)
T 4hat_C 665 ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARN 744 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33 3455566777788888999999988886421 1223332 2233444444421
Q ss_pred -----cchHHHHHHHHHhhccccc------hhhhhHHHHHHHHHhccCCh
Q 005891 351 -----LQHFRQLVVFLVHNFRVDN------SLLEKRGALIIRRLCVLLDA 389 (671)
Q Consensus 351 -----~~~F~~fm~~LL~lf~~d~------~lLe~Rg~~IIR~Lc~~L~~ 389 (671)
.....+++..++.-|.++. ..|. =++.||+++.....+
T Consensus 745 ~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~-l~s~iv~~~~~~~~~ 793 (1023)
T 4hat_C 745 LDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLN-CMTTVVEKVGHMIPQ 793 (1023)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHH-HHHHHHHHHGGGCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHH-HHHHHHHHHHHhhhh
Confidence 1234556666666665442 2333 357788888766544
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.41 E-value=2.8e-05 Score=75.13 Aligned_cols=209 Identities=16% Similarity=0.173 Sum_probs=162.3
Q ss_pred HhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhhcC
Q 005891 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF-TRLTAITWINEFVKLGG 228 (671)
Q Consensus 150 i~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~-irl~al~WI~~~~~l~~ 228 (671)
..|=-+|++.+..+|.|.-=.|++.|...+....++.+. -++.++..++..+..++.. .-.+....++.+....|
T Consensus 27 a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e----l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED----LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH----HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 456678899999999999999999998888877776541 2677777777775544321 11223445666666666
Q ss_pred cCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005891 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (671)
Q Consensus 229 ~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~ 308 (671)
+. ..+++|.++.+..-.++.+|---..+.+..++.-.+ -++.++.-+...+.+.+...|.+||+++.++.+
T Consensus 103 e~----v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~-----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 103 EL----VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM-----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HH----HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HH----HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 44 568899999999988999997766777777665321 135667777788889999999999999999999
Q ss_pred hChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhH
Q 005891 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 375 (671)
Q Consensus 309 ~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~R 375 (671)
..+.-+.||++. |...|.|.+.-||..+.++|..++...+-|++++..-++.|.+...++...
T Consensus 174 n~~~yv~PfLpr----L~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~ 236 (253)
T 2db0_A 174 NSFKYVNPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKT 236 (253)
T ss_dssp TTHHHHGGGHHH----HHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHH
T ss_pred cCccccCcchHH----HHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 998888887765 456788999999999999999999765669999999999999998888755
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.38 E-value=1e-05 Score=89.61 Aligned_cols=253 Identities=15% Similarity=0.054 Sum_probs=157.4
Q ss_pred HHHHHHHHhhcCCchhHHhchH--HHHHHHHHhcC----------C-CChHHHHHHHHHHHHHHHHhh-cCCCC-ChHHH
Q 005891 133 FLVGWITVLDSVPDIDMLGFLP--DFLDGLFNMLS----------D-SSHEIRQQADSALWEFLQEIK-NSPSV-DYGRM 197 (671)
Q Consensus 133 ~alswL~~L~~ip~~~li~~Lp--~fL~gLf~lL~----------D-~~~eVR~~a~~~L~~ll~~I~-~~~~~-d~~~i 197 (671)
.++..|.++..-+ +.-.++- ..++.|.+++. | .+++++..|..+|..+...=. ....+ ..+..
T Consensus 167 qAv~aL~nls~~~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCCH--HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 6677777764332 2222211 23455555552 2 356788888898888874211 00001 13567
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc--hHhHHHHHhhhh-cCCcHhHHHHHHHHHHHHHHhcCCCCCC
Q 005891 198 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCI-SDKEEKIRVVARETNEELRAIKADPADG 274 (671)
Q Consensus 198 I~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pf--lp~LLp~LL~~L-sd~~~eIR~~A~~~n~~L~~~i~~~~~~ 274 (671)
||.|+..+.+++++++..|+..|..+..-........ -...+|.++..+ ...++++++.|..+...+.....+....
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999999888877654211111111 235677777764 4567788887777666554321110001
Q ss_pred CC-hHhHHHHHHHhcCCCcH----HHHHHHHHHHHHHHh---hChhhHhhh-hhHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005891 275 FD-VGPILSIATRQLSSEWE----ATRIEALHWISTLLN---RHRTEVLHF-LNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (671)
Q Consensus 275 ~d-l~~il~~L~~~L~~~~~----~tRiaaL~WL~~L~~---~~p~~i~~~-l~~l~p~LL~~LsD~s~eV~~~~l~lLa 345 (671)
+- ....++.|.+.+.+... ..+..|.-.|..+.. ..++..... -.+.+|.|+..|.+.+++|+..++|+|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 10 13577888888875432 366666666666665 455443322 2468999999999999999999999999
Q ss_pred HHhhc-cc---hHHH--HHHHHHhhccccchhhhhHHHHHHHHHhccC
Q 005891 346 CIAKD-LQ---HFRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (671)
Q Consensus 346 ~Is~~-~~---~F~~--fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L 387 (671)
.++.+ +. .+.. .+..|.+++.....-..+.+...+++|+..-
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99943 22 2221 5677788886665555666777888888764
No 81
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.38 E-value=2.3e-06 Score=91.77 Aligned_cols=282 Identities=13% Similarity=0.119 Sum_probs=147.7
Q ss_pred hhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccch
Q 005891 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~ 109 (671)
..+-+.++.+|..+|...|...--.+.++++. ..+++ -+...+.+=++|+++-+|..| -.|.++ .. +
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I----~~---~ 134 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI----IVTSSLTKDMTGKEDSYRGPAVRALCQI----TD---S 134 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG----GGHHHHHHHHHSSCHHHHHHHHHHHHHH----CC---T
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH----HHHHHHHhhcCCCcHhHHHHHHHHHhcC----CC---H
Confidence 35667788999999999999888888787775 34444 345566777899999999888 444443 32 2
Q ss_pred hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcC
Q 005891 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
--++.+.+.+.+.+.|.+|+||..|+-+...+....+. ++. .|++.+-.++.|.++-|.-.|..+|.++.+
T Consensus 135 ~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-~v~---~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~----- 205 (355)
T 3tjz_B 135 TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-VVK---RWVNEAQEAASSDNIMVQYHALGLLYHVRK----- 205 (355)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-HHH---TTHHHHHHHTTCSSHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-HHH---HHHHHHHHHhcCCCccHHHHHHHHHHHHHh-----
Confidence 24788999999999999999999999888877665543 332 466677779999999998766555555442
Q ss_pred CCCChHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHH
Q 005891 190 PSVDYGRMAEILVQRAAS---PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (671)
Q Consensus 190 ~~~d~~~iI~iLl~~~~s---~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (671)
.| ..-+..++..+.. .++..+. .||+-+..+.+.+--..-.++++.+.+++.+..+.|--.|.++.-.+..
T Consensus 206 --~d-~~a~~kLv~~l~~~~l~~~~~q~---~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 206 --ND-RLAVSKMISKFTRHGLKSPFAYC---MMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp --TC-HHHHHHHHHHHHSSCCSCHHHHH---HHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred --hc-hHHHHHHHHHHhcCCCcChHHHH---HHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 12 1123333333322 2444433 3444333444333111246788888888998888888777776544433
Q ss_pred hcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005891 267 IKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (671)
Q Consensus 267 ~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~ 346 (671)
.- .-.+...++.+...+.+.+..+|.+||.-|..+..+.|+.+..+..+ +..+++|++-.+...|+.+|-+
T Consensus 280 ~~-----~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~----ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 280 CS-----AKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLD----LENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp -------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred CC-----HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHH----HHHHccCCcHhHHHHHHHHhhh
Confidence 11 11234445566666766667789999999999999999998866554 5567899998888888877755
Q ss_pred Hh
Q 005891 347 IA 348 (671)
Q Consensus 347 Is 348 (671)
-+
T Consensus 351 tg 352 (355)
T 3tjz_B 351 TG 352 (355)
T ss_dssp --
T ss_pred cc
Confidence 43
No 82
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.31 E-value=0.00025 Score=82.64 Aligned_cols=343 Identities=15% Similarity=0.129 Sum_probs=213.7
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHH-----HHHhhcccc
Q 005891 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL-----VKDIVTESD 108 (671)
Q Consensus 35 ~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~Ldrl-----lKdIv~e~~ 108 (671)
+.+...+++ ..+|..|+-.|-.+.+.-+.. -.-..++.+.+.+.+.+++...+..| +.|.-+ +|+...+
T Consensus 299 ~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~-~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~-- 373 (778)
T 3opb_A 299 QLLERSLNV--EDVQIYSALVLVKTWSFTKLT-CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRS-- 373 (778)
T ss_dssp HHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT-TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHH--
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC-cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHh--
Confidence 333344443 467777766654443322211 12346788888888877665545555 765443 2332221
Q ss_pred hhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchh---------HH--------------------hchHH---
Q 005891 109 QFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDID---------ML--------------------GFLPD--- 155 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~---------li--------------------~~Lp~--- 155 (671)
-..+++.|.+.+.. .++.+-+.+++.+.++..-++.. +. .++.+
T Consensus 374 ---d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 374 ---NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp ---CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 24567777777774 67788899999999887643310 00 02222
Q ss_pred -------HHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHh
Q 005891 156 -------FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF---TRLTAITWINEFVK 225 (671)
Q Consensus 156 -------fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~---irl~al~WI~~~~~ 225 (671)
.++.|..+++.+++++|..|..+|..+...-.....+--+..++.|+..+.+..+. .|..|...+..+.-
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli 530 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI 530 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 26667788988999999999999988874321100011245678888888776544 78889998888774
Q ss_pred hcC-cCccc-ch-HhHHHHHhhhhcC-CcH------------hH-HHHHHHHHHHHHHhcCCCCCCC---Ch--HhHHHH
Q 005891 226 LGG-DQLVP-YY-ADILGAILPCISD-KEE------------KI-RVVARETNEELRAIKADPADGF---DV--GPILSI 283 (671)
Q Consensus 226 l~~-~~l~p-fl-p~LLp~LL~~Lsd-~~~------------eI-R~~A~~~n~~L~~~i~~~~~~~---dl--~~il~~ 283 (671)
... ....+ |- ...+|.++..+.. +.. .. +.-|..+...+...-...++.. =+ ...++.
T Consensus 531 s~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~ 610 (778)
T 3opb_A 531 FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWST 610 (778)
T ss_dssp TSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHH
T ss_pred cCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHH
Confidence 322 11111 11 2677877777762 211 01 3334444444433210000000 01 247788
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhChhhHh-hhh----hH---HHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccch-
Q 005891 284 ATRQLSSEWEATRIEALHWISTLLNRHRTEVL-HFL----ND---IFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQH- 353 (671)
Q Consensus 284 L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~-~~l----~~---l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-~~~~- 353 (671)
+...+.+++...|.+|..-+..|.. +++.+. .+. +. =++.|++.+..++++++..+.|.|+.+++ ++.-
T Consensus 611 L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia 689 (778)
T 3opb_A 611 IENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA 689 (778)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH
Confidence 9999999999999999999999996 555432 332 11 38889999988999999999999999963 2211
Q ss_pred ---H--HHHHHHHHhhccc--cchhhhhHHHHHHHHHhcc
Q 005891 354 ---F--RQLVVFLVHNFRV--DNSLLEKRGALIIRRLCVL 386 (671)
Q Consensus 354 ---F--~~fm~~LL~lf~~--d~~lLe~Rg~~IIR~Lc~~ 386 (671)
+ ..++..++.++.+ ++.-+..||..++++|-..
T Consensus 690 ~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 690 KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 1 3577788888877 7888899999999999863
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.31 E-value=1.3e-05 Score=85.80 Aligned_cols=225 Identities=11% Similarity=0.048 Sum_probs=155.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCchh--HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--hhcCCCCChHHHHHHH
Q 005891 126 LNPYVRQFLVGWITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE--IKNSPSVDYGRMAEIL 201 (671)
Q Consensus 126 ~np~vR~~alswL~~L~~ip~~~--li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~--I~~~~~~d~~~iI~iL 201 (671)
.++.++..++..|.++..-.+.. .+.-....++.|.++|..++++|+..|+.+|..+... -.++..+--...||.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 35789999999999998654322 2323456678888899999999999999999888641 0000000013467888
Q ss_pred HHh-cCCCCHHHHHHHHHHHHHHHhhcCcCcccc--hHhHHHHHhhhhcCCcH----hHHHHHHHHHHHHHHhcCCCCCC
Q 005891 202 VQR-AASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEE----KIRVVARETNEELRAIKADPADG 274 (671)
Q Consensus 202 l~~-~~s~d~~irl~al~WI~~~~~l~~~~l~pf--lp~LLp~LL~~Lsd~~~----eIR~~A~~~n~~L~~~i~~~~~~ 274 (671)
+.. ..+.++.++..|+..+.++....++.-... ....+|.+...+.+..+ ++++.|..+...+...+....+.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 886 456788888888887777765332111112 35778888888876543 47877776666665432111110
Q ss_pred ---CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 005891 275 ---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350 (671)
Q Consensus 275 ---~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l-~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~ 350 (671)
+--...++.|.+.+.+.+...+..|...|..+..+.++...... .+.+|.|++.|.+.++.++..++++|..++.+
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 00024678899999988899999999999999866665443332 46899999999999999999999999999954
No 84
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.26 E-value=8.2e-08 Score=87.52 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=85.7
Q ss_pred hHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhccc
Q 005891 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 29 yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
....-++.+...+.|+++.||+.|+.++.++.. . . ++.|.+++.|+++.||..| ..|.++ -
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~------~-~~~L~~~L~d~~~~vR~~A~~aL~~~----~--- 70 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E------A-FEPLLESLSNEDWRIRGAAAWIIGNF----Q--- 70 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSS----T------T-HHHHHHGGGCSCHHHHHHHHHHHGGG----C---
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h------H-HHHHHHHHcCCCHHHHHHHHHHHHhc----C---
Confidence 344566788999999999999999988765421 1 1 4778889999999999888 443332 1
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWE 181 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ 181 (671)
-+..+|.|.+.+.+.++.||..++..+..+.. +..++.|.+++.|+++.||..|..+|+.
T Consensus 71 ----~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 71 ----DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 13458888888899999999999999988752 4567777789999999999999887753
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.21 E-value=2e-05 Score=84.51 Aligned_cols=234 Identities=14% Similarity=0.037 Sum_probs=154.6
Q ss_pred hHHHHHhccC-----------CCCHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHH
Q 005891 33 IVPPVLNSFS-----------DQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDR 98 (671)
Q Consensus 33 Ii~pvL~~l~-----------D~d~rVR~~A~eaL~nI~Kv~~~--~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~Ldr 98 (671)
.+++++..+. ..+..+|..|+.+|.|++..-.. ..+..-...+|.|.+++.+++++|+..| .+|..
T Consensus 74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 153 (354)
T 3nmw_A 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5566666662 12478999999999999743111 1111123569999999999999998887 66766
Q ss_pred HHHH-hhcccchhhhhhhHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCchh--HHhchHHHHHHHHHhcCCCCh----H
Q 005891 99 LVKD-IVTESDQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSH----E 170 (671)
Q Consensus 99 llKd-Iv~e~~~f~L~~fIP~L~e~-i~~~np~vR~~alswL~~L~~ip~~~--li~~Lp~fL~gLf~lL~D~~~----e 170 (671)
+... -........-...||.|.+. ....++.++..++..+..+....+.. -+..-...++.|.+++.+++. +
T Consensus 154 Ls~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~ 233 (354)
T 3nmw_A 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233 (354)
T ss_dssp HHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCH
T ss_pred HhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHH
Confidence 6431 00000111113457888886 45678999999999999998744221 111123456777778876654 5
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccc--hHhHHHHHhh
Q 005891 171 IRQQADSALWEFLQEIKNSPS----VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILP 244 (671)
Q Consensus 171 VR~~a~~~L~~ll~~I~~~~~----~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pf--lp~LLp~LL~ 244 (671)
|++.|+.+|..+...+-..+. +--...++.|++.+.+++..++..|+..|.++..-.++. ... -...+|.+..
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~i~~Lv~ 312 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-QEALWDMGAVSMLKN 312 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH-HHHHHHTTHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHH-HHHHHHCCCHHHHHH
Confidence 898888888887742210000 001347899999999999999999999888776322211 111 2466889999
Q ss_pred hhcCCcHhHHHHHHHHHHHHHHh
Q 005891 245 CISDKEEKIRVVARETNEELRAI 267 (671)
Q Consensus 245 ~Lsd~~~eIR~~A~~~n~~L~~~ 267 (671)
.+...++++|+.|..+...+...
T Consensus 313 LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 313 LIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999888877754
No 86
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.21 E-value=3.9e-05 Score=80.24 Aligned_cols=232 Identities=12% Similarity=0.018 Sum_probs=143.6
Q ss_pred hHHHHHhccCCCC------------HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-hhcCCchHHHHHH-HHHHH
Q 005891 33 IVPPVLNSFSDQD------------SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLDR 98 (671)
Q Consensus 33 Ii~pvL~~l~D~d------------~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~k-L~~D~d~~Vr~gA-~~Ldr 98 (671)
.++.++..+.|++ ..-|..|.+.|.++++.......-.-...++.|.. ++.++++.||..| ..|..
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455555556653 24566667777776642211000001245678888 9999999999988 67776
Q ss_pred HHHHhhcccchhhhhhhHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHhch-HHHHHHHHHhcCCCChHHHHHHH
Q 005891 99 LVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFL-PDFLDGLFNMLSDSSHEIRQQAD 176 (671)
Q Consensus 99 llKdIv~e~~~f~L~~fIP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~li~~L-p~fL~gLf~lL~D~~~eVR~~a~ 176 (671)
+..+-..-.....-...+|.|...+.. .++.+|..++..|..+..-.+.....+. -..++.|..+|.+++..||+.|+
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~ 188 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 654211100011112467888888874 6899999999999998754332221111 14677778899999999999999
Q ss_pred HHHHHHHHHhhcC-CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC------cccchHhHHHHHhhhhcCC
Q 005891 177 SALWEFLQEIKNS-PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ------LVPYYADILGAILPCISDK 249 (671)
Q Consensus 177 ~~L~~ll~~I~~~-~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~------l~pflp~LLp~LL~~Lsd~ 249 (671)
.+|..++..-... ..+--..+++.|+..+.+++..++..|+..+..++...+.. ..+-+..+|.-....+...
T Consensus 189 ~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~ 268 (296)
T 1xqr_A 189 FLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 268 (296)
T ss_dssp HHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccch
Confidence 9999998741100 00012468899999999999999999999999888763211 1122444444444445422
Q ss_pred --cHhHHHHHHHHHHHH
Q 005891 250 --EEKIRVVARETNEEL 264 (671)
Q Consensus 250 --~~eIR~~A~~~n~~L 264 (671)
..++.+.|.+..+.+
T Consensus 269 e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 269 EEYQEELEFCEKLLQTC 285 (296)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 345665555554433
No 87
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.17 E-value=0.00053 Score=68.73 Aligned_cols=222 Identities=13% Similarity=0.095 Sum_probs=164.2
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchh
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~-~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f 110 (671)
.+..++..++|+|..|+.-|..++.++.|...+ .-.....++||.+.+++.+.+..|.=-| .+|..++++..- +..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL--~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM--GSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB--CHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC--CHH
Confidence 666777788999999999999999999886433 2234467999999999988887765555 777777775543 345
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC
Q 005891 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (671)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~ 190 (671)
+..+++..+...+..+|+-.+..+.+.+..+ + .....|.+..-++.++.-.+++|+.++..+|-... ..+.
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-----v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia---~~S~ 182 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-----PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML---NSSA 182 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-----BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG---GGCS
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-----cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh---cccC
Confidence 6689999999999999999999999999887 2 23456777888888888889999998866444443 2322
Q ss_pred CC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc-CcCcccchHhHHHHHhhhhc--CCcHhHHHHHHHHHHHHHH
Q 005891 191 SV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCIS--DKEEKIRVVARETNEELRA 266 (671)
Q Consensus 191 ~~-d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~-~~~l~pflp~LLp~LL~~Ls--d~~~eIR~~A~~~n~~L~~ 266 (671)
+. .+..++.-+-..+++.|+.++..|+..+.++.... .+...+=+-+++.++- +++ +..|.+|.-|..+.+.+-.
T Consensus 183 D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~-~l~~~~~~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 183 DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD-GLVYREGAPIIRLKAKKVSDLIDS 261 (265)
T ss_dssp SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH-HGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH-HHHHhcCChhHHHHHHHHHHHHHH
Confidence 22 26777777778888999999999999888777653 3444444444444443 455 5679999999888765543
No 88
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00028 Score=82.22 Aligned_cols=317 Identities=12% Similarity=0.077 Sum_probs=207.5
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHH--hcchhhhhHHHHHHHHHHhhcC-CchHHHHHH-HHHHHHHHHhhc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV--VRGDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv--~~~~il~~f~eIf~~L~kL~~D-~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
...+.+.+...|.+++...|..|+|.|..+... ++. .+..=...+..|.+++.+ .+.++--|| ..+..+.++--.
T Consensus 332 i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe-~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 332 LKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKI-MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHH-HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHH-HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence 345778888999988877899999999888632 122 221113456667766664 455555555 666655442110
Q ss_pred --c------------------c---c----------h-----hhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch
Q 005891 106 --E------------------S---D----------Q-----FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI 147 (671)
Q Consensus 106 --e------------------~---~----------~-----f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~ 147 (671)
+ . + + ..=...+|.|...+.+.++.+|..++..|..+..-+..
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 0 0 0 0 01123789999999999999999999999999755331
Q ss_pred --hHHhchHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHHhhcC---CCCChHHHHHHHHHhcCC-CC---------
Q 005891 148 --DMLGFLPDFLDGLFNMLSDSSHE---IRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQRAAS-PD--------- 209 (671)
Q Consensus 148 --~li~~Lp~fL~gLf~lL~D~~~e---VR~~a~~~L~~ll~~I~~~---~~~d~~~iI~iLl~~~~s-~d--------- 209 (671)
.+... .-++.|..++...... +|..|..+|..++-..... +....-..|+.|++.+.. ++
T Consensus 491 R~~lvqq--Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~ 568 (778)
T 3opb_A 491 IPQLAQQ--GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568 (778)
T ss_dssp HHHHHHT--THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred HHHHHHC--CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence 12221 3355566687766543 8999999999998432100 011222678888888762 22
Q ss_pred ----HHHHHHHHHHHHHHHhhcC---cCccc-ch--HhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCC-CCCCh-
Q 005891 210 ----EFTRLTAITWINEFVKLGG---DQLVP-YY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPA-DGFDV- 277 (671)
Q Consensus 210 ----~~irl~al~WI~~~~~l~~---~~l~p-fl--p~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~-~~~dl- 277 (671)
..-+..|+..+.+++...+ ++... .+ .+.+|.+...|.++++.||..|.++...++..-..-. .-++.
T Consensus 569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~ 648 (778)
T 3opb_A 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE 648 (778)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence 1237789999999988763 22211 13 3578999999998899999999999888874221000 01111
Q ss_pred -Hh---HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hhHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhh
Q 005891 278 -GP---ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD--PSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 278 -~~---il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~--l~~l~p~LL~~LsD--~s~eV~~~~l~lLa~Is~ 349 (671)
+. =++.|...+.+++..+|.+|...|..+....+.-.... .++.+..++..|.| ++++++..++-++..+++
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 11 27788888999999999999977777766666432222 23678888888888 899999999999888883
No 89
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.08 E-value=0.0017 Score=78.92 Aligned_cols=307 Identities=13% Similarity=0.185 Sum_probs=173.7
Q ss_pred HHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchh--------hhhHHHHHHHHHHhhcCCchH-H
Q 005891 19 YADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF--------IIFFNQIFDALCKLSADSDAN-V 89 (671)
Q Consensus 19 ~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i--------l~~f~eIf~~L~kL~~D~d~~-V 89 (671)
|.+....-.+|++.++.-++..+.|+++.|..+||.++..|+..|+... .+|.++|+..+.....+-++. +
T Consensus 553 Y~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~ 632 (1073)
T 3gjx_A 553 YPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQV 632 (1073)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHH
T ss_pred hHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHH
Confidence 3333333367889999999999999999999999999999999888643 358888998888877775543 2
Q ss_pred HHHHHHHHHHHHHhhccc-chhhhhhhHHHHHHhhcC------------CCHHHHHHHHHHHH---HhhcCCchhHHhch
Q 005891 90 QSAAHLLDRLVKDIVTES-DQFSIEEFIPLLRERMNV------------LNPYVRQFLVGWIT---VLDSVPDIDMLGFL 153 (671)
Q Consensus 90 r~gA~~LdrllKdIv~e~-~~f~L~~fIP~L~e~i~~------------~np~vR~~alswL~---~L~~ip~~~li~~L 153 (671)
..--+++..++.....+. ....++.++|+..+.... .++.+-.-+...+. .+++..|..+.+++
T Consensus 633 ~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~ 712 (1073)
T 3gjx_A 633 HTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQL 712 (1073)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHH
Confidence 222244444444222211 133466677776665432 13432222333333 23334445555666
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcC---
Q 005891 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ--- 230 (671)
Q Consensus 154 p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~--- 230 (671)
..+.+.+++ +=+...+.+.+.+..=|. ..... .++.+++ .+|.+.+.-+..++.-..+.
T Consensus 713 ~~i~~~~l~--------~y~~~s~~i~~~v~~~g~---~~~~~---~~~~~~r----~ik~eil~l~~~~i~~~~~~~~v 774 (1073)
T 3gjx_A 713 GRIYLDMLN--------VYKCLSENISAAIQANGE---MVTKQ---PLIRSMR----TVKRETLKLISGWVSRSNDPQMV 774 (1073)
T ss_dssp HHHHHHHHH--------HHHHHHHHHHHHHHHHCG---GGGSS---HHHHHHH----HHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHH--------HHHHHHHHHHHHHHhCCc---hhhcc---HHHHHHH----HHHHHHHHHHHHHHhcCCCHHHH
Confidence 555554442 222222222222221110 00000 0111111 24555666666655544321
Q ss_pred cccchHhHHHHHhhhhcCC-----cHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHH----HHhcC---CCcHHHHHH
Q 005891 231 LVPYYADILGAILPCISDK-----EEKIRVVARETNEELRAIKADPADGFDVGPILSIA----TRQLS---SEWEATRIE 298 (671)
Q Consensus 231 l~pflp~LLp~LL~~Lsd~-----~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L----~~~L~---~~~~~tRia 298 (671)
.-.|+|.++..++.--..+ ++++=........++-..+.+ .+..|++.+ .+++. .+..++|..
T Consensus 775 ~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~-----~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ 849 (1073)
T 3gjx_A 775 AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITA-----EIPQIFDAVFECTLNMINKDFEEYPEHRTN 849 (1073)
T ss_dssp HHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGG-----GHHHHHHHHHHHHHHHHSSCSSSCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHhCCcccCcHHHHH
Confidence 2346777777777644433 444444444433333332221 233344332 12222 457889999
Q ss_pred HHHHHHHHHhhChhhHhh----hhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 299 ALHWISTLLNRHRTEVLH----FLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 299 aL~WL~~L~~~~p~~i~~----~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
=...+.++..+|+..++. .+..++..++=.++++..+|-..++.++..+-
T Consensus 850 ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll 903 (1073)
T 3gjx_A 850 FFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLL 903 (1073)
T ss_dssp HHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 999999999999998876 34457777778889999999888887665543
No 90
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.07 E-value=1.4e-06 Score=88.69 Aligned_cols=184 Identities=21% Similarity=0.154 Sum_probs=129.2
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHH
Q 005891 39 NSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPL 118 (671)
Q Consensus 39 ~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~ 118 (671)
..++|+++.||..|+..+ . ...|..++.|+++.||..|.. + .. .+.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~----------~~~l~~L~~D~~~~VR~~aA~--~-----L~----------~~~ 102 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P----------VEALTPLIRDSDEVVRRAVAY--R-----LP----------REQ 102 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C----------GGGGGGGTTCSSHHHHHHHHT--T-----SC----------SGG
T ss_pred HHhcCCCHHHHHHHHHhC-------C----------HHHHHHHccCcCHHHHHHHHH--H-----CC----------HHH
Confidence 445999999999998753 1 123678899999999988831 1 11 134
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 005891 119 LRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMA 198 (671)
Q Consensus 119 L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI 198 (671)
|...+.|+++.||..+...+ +. +.|..+++|++.+||.++... +. .
T Consensus 103 L~~ll~D~d~~VR~~aA~~l------~~-----------~~L~~L~~D~d~~VR~~aA~~-------l~----------~ 148 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL------PL-----------EQLEQMAADRDYLVRAYVVQR-------IP----------P 148 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS------CT-----------GGGGGGTTCSSHHHHHHHHHH-------SC----------G
T ss_pred HHHHHcCCCHHHHHHHHHhC------CH-----------HHHHHHHcCCCHHHHHHHHHh-------cC----------H
Confidence 66778899999999998843 21 124467899999999998662 21 1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChH
Q 005891 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVG 278 (671)
Q Consensus 199 ~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~ 278 (671)
+.+....+++++.||..+...+ +. +.+...+.|++++||..+... +.
T Consensus 149 ~~l~~l~~D~d~~VR~~aa~~l-------~~----------~ll~~ll~D~d~~VR~aaa~~-------l~--------- 195 (244)
T 1lrv_A 149 GRLFRFMRDEDRQVRKLVAKRL-------PE----------ESLGLMTQDPEPEVRRIVASR-------LR--------- 195 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS-------CG----------GGGGGSTTCSSHHHHHHHHHH-------CC---------
T ss_pred HHHHHHHcCCCHHHHHHHHHcC-------CH----------HHHHHHHcCCCHHHHHHHHHh-------CC---------
Confidence 2344567889999999887741 11 233456789999999988764 11
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHH
Q 005891 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEV 343 (671)
Q Consensus 279 ~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~l 343 (671)
.+.|...+.+++|.+|.++..-+. .+ .+..|.|++..||..+.+-
T Consensus 196 --~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~-~L~~L~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 196 --GDDLLELLHDPDWTVRLAAVEHAS-----------------LE-ALRELDEPDPEVRLAIAGR 240 (244)
T ss_dssp --GGGGGGGGGCSSHHHHHHHHHHSC-----------------HH-HHHHCCCCCHHHHHHHHCC
T ss_pred --HHHHHHHHcCCCHHHHHHHHHcCC-----------------HH-HHHHccCCCHHHHHHHHHH
Confidence 134566678999999999988753 13 4455699999999877653
No 91
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.05 E-value=0.00071 Score=80.39 Aligned_cols=263 Identities=11% Similarity=0.077 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhc
Q 005891 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN 124 (671)
Q Consensus 46 ~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~ 124 (671)
..+|..||.+|.-+. -|.. =.++++.|...+.|.+..++.+| ..|..+ .++..+...+..++..+. .
T Consensus 451 ~~ir~gAaLGLGla~---~GS~---~eev~e~L~~~L~dd~~~~~~~AalALGli---~vGTgn~~ai~~LL~~~~---e 518 (963)
T 4ady_A 451 DVLLHGASLGIGLAA---MGSA---NIEVYEALKEVLYNDSATSGEAAALGMGLC---MLGTGKPEAIHDMFTYSQ---E 518 (963)
T ss_dssp HHHHHHHHHHHHHHS---TTCC---CHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCCCHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHh---cCCC---CHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---hcccCCHHHHHHHHHHHh---c
Confidence 789999998876653 1211 12667777777777777777555 333332 233333444555555554 3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 005891 125 VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQR 204 (671)
Q Consensus 125 ~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~ 204 (671)
+.+..+|.+++..|..+.---. ...+.++..| ..|.++-||..+.-+++--.-..+ + ...|..|++.
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~----e~~~~li~~L---~~~~dp~vRygaa~alglAyaGTG-----n-~~aIq~LL~~ 585 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQ----ELADDLITKM---LASDESLLRYGGAFTIALAYAGTG-----N-NSAVKRLLHV 585 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCG----GGGHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTSC-----C-HHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhhCCCh----HHHHHHHHHH---HhCCCHHHHHHHHHHHHHHhcCCC-----C-HHHHHHHHHH
Confidence 6788999999999987643222 2344445533 247899999987655543322222 2 3344433333
Q ss_pred -cCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhh-cCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHH
Q 005891 205 -AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI-SDKEEKIRVVARETNEELRAIKADPADGFDVGPILS 282 (671)
Q Consensus 205 -~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~L-sd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~ 282 (671)
..++++.+|..|+..|.. +.+... +.+|.++..+ .+.++.||..|.-+.+.+. . +-...++++
T Consensus 586 ~~~d~~d~VRraAViaLGl-I~~g~~-------e~v~rlv~~L~~~~d~~VR~gAalALGli~--a-----Gn~~~~aid 650 (963)
T 4ady_A 586 AVSDSNDDVRRAAVIALGF-VLLRDY-------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC--A-----GKGLQSAID 650 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHH-HTSSSC-------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT--S-----SSCCHHHHH
T ss_pred hccCCcHHHHHHHHHHHHh-hccCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc--c-----CCCcHHHHH
Confidence 346788899988888863 333332 2344455533 4788999999988776542 1 112368888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCC--CCHHHHHHHHHHHHHHh
Q 005891 283 IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 283 ~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD--~s~eV~~~~l~lLa~Is 348 (671)
.|.....+.+..+|.+|+..|+.+..+..+..-+.+..+...|.+..+| +++.++..+.-..+.+.
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 8988899999999999999999999998888777777777777777776 34555554444444433
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.03 E-value=0.0013 Score=66.02 Aligned_cols=222 Identities=18% Similarity=0.083 Sum_probs=169.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-chhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCC
Q 005891 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (671)
Q Consensus 115 fIP~L~e~i~~~np~vR~~alswL~~L~~ip-~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d 193 (671)
.+-.|.+.+++.|+.++..++..|..+.+-. +.-=...+.++|+.+.+++.+.+.-|--.|..||+.+++.++-. .-+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-SKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-HHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-HHH
Confidence 4566778889999999999999999887754 44445567788888888999999999999999999999866421 124
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCC
Q 005891 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (671)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~ 273 (671)
|..++..+..-..++++..+..|.+-++.+ ......++++..+...+...+++++.+|-.+.......-++
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D--- 183 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD--- 183 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS---
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC---
Confidence 899999999999999999999988877654 23445799999999999888999999988776555443332
Q ss_pred CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhHhhhhhHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 005891 274 GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALS--DPSDEVVLLVLEVHACI 347 (671)
Q Consensus 274 ~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~-~p~~i~~~l~~l~p~LL~~Ls--D~s~eV~~~~l~lLa~I 347 (671)
.-.+..++.-+...+.+++...+.-||..+-.+... .++++.+-+-++.. ..+.|. -..|.++.+|-.+...+
T Consensus 184 ~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 184 SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISR-IVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHH-HHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHH-HHHHHHHhcCChhHHHHHHHHHHHH
Confidence 234678888899999999999999999988877665 33444433333333 334444 45688888877666554
No 93
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.00 E-value=0.0019 Score=76.70 Aligned_cols=300 Identities=12% Similarity=-0.002 Sum_probs=181.6
Q ss_pred HHHhhhhhHHhHhhhHHHHHhccC---CCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCc--------h
Q 005891 19 YADLFFYSETILQQIVPPVLNSFS---DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD--------A 87 (671)
Q Consensus 19 ~~~~~~~~~~yl~~Ii~pvL~~l~---D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d--------~ 87 (671)
.|.+|-.-.-+.+..+..+-..+. ..+..+|..|+-++.-|....+. ++++.|...+.+.+ +
T Consensus 379 ~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~ 451 (963)
T 4ady_A 379 TASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVD 451 (963)
T ss_dssp HHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHH
T ss_pred HHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccH
Confidence 334444333344555666666665 56789999998888777533332 34455554444333 5
Q ss_pred HHHHHHH-HHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHh-hcCCchhHHhchHHHHHHHHHhcC
Q 005891 88 NVQSAAH-LLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL-DSVPDIDMLGFLPDFLDGLFNMLS 165 (671)
Q Consensus 88 ~Vr~gA~-~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L-~~ip~~~li~~Lp~fL~gLf~lL~ 165 (671)
.+|.||. .|.-. -++ ++ =+..++.|.+.+.+.++.+|.++.-.+..+ ......+.+ ..++.. +..
T Consensus 452 ~ir~gAaLGLGla---~~G-S~---~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai---~~LL~~---~~e 518 (963)
T 4ady_A 452 VLLHGASLGIGLA---AMG-SA---NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI---HDMFTY---SQE 518 (963)
T ss_dssp HHHHHHHHHHHHH---STT-CC---CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH---HHHHHH---HHH
T ss_pred HHHHHHHHHHHHH---hcC-CC---CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH---HHHHHH---Hhc
Confidence 7887873 32221 111 11 134566666777778888898888888865 333333322 222322 224
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhh-
Q 005891 166 DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP- 244 (671)
Q Consensus 166 D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~- 244 (671)
|.+.+||+.+.-+|+-+. +++ .-..+.++..+. .+.++.+|..++..+. +...|..- +..+..+|.
T Consensus 519 ~~~e~vrR~aalgLGll~--~g~--~e~~~~li~~L~---~~~dp~vRygaa~alg--lAyaGTGn----~~aIq~LL~~ 585 (963)
T 4ady_A 519 TQHGNITRGLAVGLALIN--YGR--QELADDLITKML---ASDESLLRYGGAFTIA--LAYAGTGN----NSAVKRLLHV 585 (963)
T ss_dssp CSCHHHHHHHHHHHHHHT--TTC--GGGGHHHHHHHH---HCSCHHHHHHHHHHHH--HHTTTSCC----HHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhh--CCC--hHHHHHHHHHHH---hCCCHHHHHHHHHHHH--HHhcCCCC----HHHHHHHHHH
Confidence 678899999878777553 222 012444555444 3578999998777664 22333331 455554444
Q ss_pred hhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHH
Q 005891 245 CISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 323 (671)
Q Consensus 245 ~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L-~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p 323 (671)
+..|.+.++|..|..+.+.+. +++ .+.++.+..++ .+.++.+|.+|...++.+.-+.|. ..++.
T Consensus 586 ~~~d~~d~VRraAViaLGlI~--~g~-------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid 650 (963)
T 4ady_A 586 AVSDSNDDVRRAAVIALGFVL--LRD-------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAID 650 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHT--SSS-------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHH
T ss_pred hccCCcHHHHHHHHHHHHhhc--cCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHH
Confidence 456888999988876654321 222 12344444444 467799999999999998877653 45566
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhc--cc---hHHHHHHHHHhhcc
Q 005891 324 TLLKALSDPSDEVVLLVLEVHACIAKD--LQ---HFRQLVVFLVHNFR 366 (671)
Q Consensus 324 ~LL~~LsD~s~eV~~~~l~lLa~Is~~--~~---~F~~fm~~LL~lf~ 366 (671)
.|-+.++|+++.||..|...|+.|..+ +. ....|...|.+...
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 777888999999999999999999942 22 45555555555443
No 94
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.98 E-value=0.0016 Score=63.08 Aligned_cols=216 Identities=14% Similarity=0.178 Sum_probs=154.0
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCc--hHHHHHHHHHHHHHHHhh
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD--ANVQSAAHLLDRLVKDIV 104 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d--~~Vr~gA~~LdrllKdIv 104 (671)
+.|=..++..++..+.|.-|-||.-|...+.+|++.-..-+ ..+.+.|+-++.-++ +-...-|..+..+.+
T Consensus 27 a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~--- 99 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK--- 99 (253)
T ss_dssp HHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---
T ss_pred HHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHH---
Confidence 45777899999999999999999999998888876433322 344555555543232 222444444444443
Q ss_pred cccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 105 ~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
.. .--+...+|.+.+-....+|++|..+-..+..+....+ ..+|.+...++.|++|++..=|.+|-+ |+.
T Consensus 100 -i~-Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLn----Fi~ 169 (253)
T 2db0_A 100 -EK-PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALN----FIE 169 (253)
T ss_dssp -HC-HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHH----HHH
T ss_pred -hC-HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHH----HHH
Confidence 11 23478899999999999999999999888887654433 346777777788999999777777644 555
Q ss_pred HhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 185 ~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
.+|.........++|.+...+.+.|+-+|-.|.+.+..+....+. +-+++...+.-+.|....+.....+....+
T Consensus 170 alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 170 AMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred HHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 565321122567888999999999999999999999888766542 556777778888888877776666655544
No 95
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.94 E-value=0.00011 Score=81.55 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=163.7
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcch-----hhhhHHHHHHHHHH--------hhcCC-chHHHHHH-HHHH
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-----FIIFFNQIFDALCK--------LSADS-DANVQSAA-HLLD 97 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~-----il~~f~eIf~~L~k--------L~~D~-d~~Vr~gA-~~Ld 97 (671)
+...++.-+-|+.|++|.-|+.++-.|.|..+.+ .... +-....+|- .++|. -+-||+.| .+|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 6778888999999999999999999999875421 1111 112222332 23443 35788888 7777
Q ss_pred HHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHH
Q 005891 98 RLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADS 177 (671)
Q Consensus 98 rllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~ 177 (671)
.+ +-.-.+ -.++-.+........|+||...+--|.-+ .+++.-+|.+++.+...|.|++.|||..|.+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 76 533322 12222222344678899999998888877 4444448999999999999999999999988
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHH
Q 005891 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTR--LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRV 255 (671)
Q Consensus 178 ~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~ir--l~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~ 255 (671)
+|..+. . ...++.++.++..++.+-|+... -..+..+..++......-. .|.++|.+.|++.++-.+||.
T Consensus 322 tLiPIA---~---p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 322 LLCHFP---I---TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp HHTTSC---C---SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHH
T ss_pred Hhhhhc---c---hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHH
Confidence 877776 1 13589999999999887664322 2245566677776643222 369999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhc-CCCcHHHHHHHHH
Q 005891 256 VARETNEELRAIKADPADGFDVGPILSIATRQL-SSEWEATRIEALH 301 (671)
Q Consensus 256 ~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L-~~~~~~tRiaaL~ 301 (671)
++.++...++ .+.++..+-+.+ -.++..+|..+++
T Consensus 394 AVL~TL~tfL-----------~~~~LRLIFQNILLE~neeIl~lS~~ 429 (800)
T 3oc3_A 394 SILNMVKNLS-----------EESIDFLVAEVVLIEEKDEIREMAIK 429 (800)
T ss_dssp HHHHHTTTCC-----------CHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHH-----------hhhHHHHHHHHHHhCCcHHHHHHHHH
Confidence 9887764433 356666555544 4566777777775
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.83 E-value=7.2e-06 Score=74.49 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHh
Q 005891 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (671)
Q Consensus 73 eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~ 151 (671)
.-++.+..++.|+++.||..| ..|.+ .+.. . +|.|.+.+.+.++.||..++..+..+..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~--------~~~~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSR--------MGDE---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTS--------CSST---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHH--------hCch---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 446667788899999999877 33222 1111 2 5899999999999999999998877642
Q ss_pred chHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005891 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWIN 221 (671)
Q Consensus 152 ~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~ 221 (671)
+..++.|.+++.|+++.||..|..+|+.+-. +..++.|+..+.++++.+|..|+..+.
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4456777778899999999999998886531 467889999999999999999887764
No 97
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.80 E-value=2.5e-05 Score=83.73 Aligned_cols=227 Identities=15% Similarity=0.093 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhhhhhHHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHH
Q 005891 10 EIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANV 89 (671)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~V 89 (671)
+++...+.+-...... .+.++++.+++-+|+.|+++-||.+|+-+.+.+.....+-+.. .++.+..++.|.++.|
T Consensus 118 ~~iR~lALRtL~~I~~-~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~----~~~~l~~ll~d~n~~V 192 (355)
T 3tjz_B 118 DSYRGPAVRALCQITD-STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKR----WVNEAQEAASSDNIMV 192 (355)
T ss_dssp HHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHT----THHHHHHHTTCSSHHH
T ss_pred HhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHHHhcCCCccH
Confidence 3444455433333333 4677888888888889999999998888877765443332222 3556666778888888
Q ss_pred HHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCC
Q 005891 90 QSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS 168 (671)
Q Consensus 90 r~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~ 168 (671)
...| .+|..+.+ .+...+.++++.+.+. ...+|...-. +|..+......+--..-..+++-+..+|...+
T Consensus 193 ~~~Al~lL~ei~~-----~d~~a~~kLv~~l~~~-~l~~~~~q~~---llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~ 263 (355)
T 3tjz_B 193 QYHALGLLYHVRK-----NDRLAVSKMISKFTRH-GLKSPFAYCM---MIRVASRQLEDEDGSRDSPLFDFIESCLRNKH 263 (355)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHHHHSS-CCSCHHHHHH---HHHHHTCC-----------------CCCCCSS
T ss_pred HHHHHHHHHHHHh-----hchHHHHHHHHHHhcC-CCcChHHHHH---HHHHHHHhccccchhhHHHHHHHHHHHHcCCC
Confidence 8766 33333322 1233566677766542 2235544433 34433333322211122345555666788888
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcC
Q 005891 169 HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD 248 (671)
Q Consensus 169 ~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd 248 (671)
+.|--.|..++-.+-. . +...+...++++...+.++++.+|..|+.-|..+....|..+ ...-.-+..++.|
T Consensus 264 ~aVvyEa~k~I~~l~~-~---~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v----~~~n~~ie~li~d 335 (355)
T 3tjz_B 264 EMVVYEAASAIVNLPG-C---SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV----TACNLDLENLVTD 335 (355)
T ss_dssp HHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------
T ss_pred hHHHHHHHHHHHhccC-C---CHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH----HHHHHHHHHHccC
Confidence 8888877776665432 1 112345556677777888888999999998888888777654 3455566778888
Q ss_pred CcHhHHHHHH
Q 005891 249 KEEKIRVVAR 258 (671)
Q Consensus 249 ~~~eIR~~A~ 258 (671)
++..|+..|.
T Consensus 336 ~n~sI~t~Ai 345 (355)
T 3tjz_B 336 ANRSIATLAI 345 (355)
T ss_dssp ----------
T ss_pred CcHhHHHHHH
Confidence 8877765553
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.71 E-value=0.00017 Score=80.06 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=158.5
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-----HHhchHHHHHHHH--------HhcCCC-ChHHHHH
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-----MLGFLPDFLDGLF--------NMLSDS-SHEIRQQ 174 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~-----li~~Lp~fL~gLf--------~lL~D~-~~eVR~~ 174 (671)
..+.+ |...|..-+-+++|++|-.|.-.+..+....+.. -... +-...-++ .+.+|. ..-||..
T Consensus 170 eWPfq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRET 247 (800)
T 3oc3_A 170 ENVLD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDA 247 (800)
T ss_dssp CSGGG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHH
T ss_pred CCHHH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHH
Confidence 45566 8888988899999999999999999876655421 1111 11222222 355664 4679999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHH
Q 005891 175 ADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR 254 (671)
Q Consensus 175 a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR 254 (671)
|+++|+.+ .-+.. + -.++..|+.....+.|++|.-++--|.-+ .+++.=++.+++.++.++.|.+++||
T Consensus 248 aAQtLGaL-~hLp~----e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D~DDDVR 316 (800)
T 3oc3_A 248 AAYLLSRI-YPLIG----P-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIK 316 (800)
T ss_dssp HHHHHHHH-TTTSC----S-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHH-HhCCh----h-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCCcccHHH
Confidence 99999998 54432 2 35666666677888999999888877755 23332289999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCC
Q 005891 255 VVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP 332 (671)
Q Consensus 255 ~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~--~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~ 332 (671)
.+|..+...+. . .-.++.++..+-..|.+ +-...--+.++.|..|...-+. ....+.++|-|.+.|..+
T Consensus 317 AVAAetLiPIA----~---p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt 387 (800)
T 3oc3_A 317 LLSAELLCHFP----I---TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP 387 (800)
T ss_dssp HHHHHHHTTSC----C---SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS
T ss_pred HHHHHHhhhhc----c---hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC
Confidence 99988764333 1 12367777776666642 2222344455566666555432 122348889999999999
Q ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 005891 333 SDEVVLLVLEVHACIAKDLQHFRQLVVFLV 362 (671)
Q Consensus 333 s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL 362 (671)
.+.||..+++++..+. +...++.+.++++
T Consensus 388 ITSVR~AVL~TL~tfL-~~~~LRLIFQNIL 416 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLS-EESIDFLVAEVVL 416 (800)
T ss_dssp SHHHHHHHHHHTTTCC-CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 9999999999988877 4556666666554
No 99
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.58 E-value=0.018 Score=71.03 Aligned_cols=327 Identities=11% Similarity=0.097 Sum_probs=178.7
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc--c---hhhhhH-HHHHHHHHHhh--------cCCchHHH-HHHHHHH
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--G---DFIIFF-NQIFDALCKLS--------ADSDANVQ-SAAHLLD 97 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~--~---~il~~f-~eIf~~L~kL~--------~D~d~~Vr-~gA~~Ld 97 (671)
+++.++..+.| ..+|.+|++++..|+..-. . ..+..+ +..+..+.... .|.+.++. +-++++.
T Consensus 250 ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~ 327 (1204)
T 3a6p_A 250 LLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLC 327 (1204)
T ss_dssp HHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHH
Confidence 66777777775 5689999999999975221 1 122222 11122333322 11223332 2224444
Q ss_pred HHHHHhhc---c----cchhhhhhhHHHHHHhhcCCCHHHHHHHH-HHHHHhhcC---CchhHHhchHHHHHHH---HHh
Q 005891 98 RLVKDIVT---E----SDQFSIEEFIPLLRERMNVLNPYVRQFLV-GWITVLDSV---PDIDMLGFLPDFLDGL---FNM 163 (671)
Q Consensus 98 rllKdIv~---e----~~~f~L~~fIP~L~e~i~~~np~vR~~al-swL~~L~~i---p~~~li~~Lp~fL~gL---f~l 163 (671)
.+...++. . .....+..|++.+.+++.+++..+-..++ -|...+... ....+.++++.+++.+ +.-
T Consensus 328 ~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k 407 (1204)
T 3a6p_A 328 ALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVK 407 (1204)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 43332221 1 12345789999999999999888888877 466566542 2234667899998888 321
Q ss_pred c---C--------------CCC-------hHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC-----------
Q 005891 164 L---S--------------DSS-------HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP----------- 208 (671)
Q Consensus 164 L---~--------------D~~-------~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~----------- 208 (671)
+ . |.. .+-|+.....+..+....+ ..-+..+.+.+...+.+.
T Consensus 408 ~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p---~~~l~~v~~~l~~~l~~~l~~~~~~~~~~ 484 (1204)
T 3a6p_A 408 MGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP---KTSFQMAGEWLKYQLSTFLDAGSVNSCSA 484 (1204)
T ss_dssp CCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTCC-----------
T ss_pred hcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 2 1 111 1234444444444433221 111344445554444321
Q ss_pred ------------CH-----HHHHHHHHHHHHHH-hhc-CcCcc-cchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc
Q 005891 209 ------------DE-----FTRLTAITWINEFV-KLG-GDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (671)
Q Consensus 209 ------------d~-----~irl~al~WI~~~~-~l~-~~~l~-pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i 268 (671)
++ +....+++.+..-+ ... .+.+. ...|.+++.++. +...+|.+|..+..+.+.+....
T Consensus 485 ~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~-~~~~~p~l~~~~i~~l~~l~~~~ 563 (1204)
T 3a6p_A 485 VGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN-FDTKDPLILSCVLTNVSALFPFV 563 (1204)
T ss_dssp ------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHGGGG
T ss_pred cccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHHHHH
Confidence 11 11223344443322 222 11111 123444444332 13468899999999988888776
Q ss_pred CCCCCCCChHhHHHHHHHhcCC------------CcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCC---
Q 005891 269 ADPADGFDVGPILSIATRQLSS------------EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS--- 333 (671)
Q Consensus 269 ~~~~~~~dl~~il~~L~~~L~~------------~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s--- 333 (671)
...++ -+..+++.+...+.+ .+-..|.+|-..+..+...|++.+.+|++.+...+-..++...
T Consensus 564 ~~~p~--~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~ 641 (1204)
T 3a6p_A 564 TYRPE--FLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLT 641 (1204)
T ss_dssp GTCGG--GHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSC
T ss_pred hcCch--HHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCccccc
Confidence 54221 256777766655543 2346899999999999999999999999999987776554222
Q ss_pred HHHHHHHHHHHHHHhh-------ccchHHHHHHHHHhhccc
Q 005891 334 DEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRV 367 (671)
Q Consensus 334 ~eV~~~~l~lLa~Is~-------~~~~F~~fm~~LL~lf~~ 367 (671)
+.=+..-.+.+.-++. ...|++.++..+.+.+.+
T Consensus 642 ~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 642 QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 1111112223333331 235577788777776654
No 100
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.49 E-value=8.3e-05 Score=75.63 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=24.2
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhcCCchHHHHHH
Q 005891 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA 93 (671)
Q Consensus 37 vL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA 93 (671)
+...+.|++++||+.|+..+ .. +.|..++.|+++.||.++
T Consensus 79 l~~L~~D~~~~VR~~aA~~L-------~~----------~~L~~ll~D~d~~VR~~a 118 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL-------PR----------EQLSALMFDEDREVRITV 118 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------CS----------GGGGGTTTCSCHHHHHHH
T ss_pred HHHHccCcCHHHHHHHHHHC-------CH----------HHHHHHHcCCCHHHHHHH
Confidence 34455788888888776542 11 234556667777777665
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.41 E-value=0.0058 Score=61.41 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=103.9
Q ss_pred HhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH-hhcCCchHHHHHH-HHHHHHHHHhhccc
Q 005891 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLDRLVKDIVTES 107 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~k-L~~D~d~~Vr~gA-~~LdrllKdIv~e~ 107 (671)
.+++++......+|+...||++|+..+... . ...++++.+-. +.+|..-.||..+ ..++.+++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~----~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~------ 133 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL----S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCK------ 133 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT----T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc----c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH------
Confidence 567888888889999999999999964433 1 12577888887 7789999999987 56666554
Q ss_pred chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 005891 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~ 184 (671)
....+..+|.+.+-..+.|+.||..++..+....+.+ .+......+++-|-.+..|++.=||++....|.++.+
T Consensus 134 -~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 134 -KIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp -HHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred -hcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 1233457888999999999999999998876544443 2334445566666678999999999999898888775
No 102
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.30 E-value=0.0011 Score=79.90 Aligned_cols=206 Identities=8% Similarity=0.097 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhhcCCc-hhHHhchHH-HHHHHHHhcCCCCh-HHHHH-HHHHHHHHHHHhhcCCCC--ChHHHHHHHHHh
Q 005891 131 RQFLVGWITVLDSVPD-IDMLGFLPD-FLDGLFNMLSDSSH-EIRQQ-ADSALWEFLQEIKNSPSV--DYGRMAEILVQR 204 (671)
Q Consensus 131 R~~alswL~~L~~ip~-~~li~~Lp~-fL~gLf~lL~D~~~-eVR~~-a~~~L~~ll~~I~~~~~~--d~~~iI~iLl~~ 204 (671)
-..++.||......+. ..+.+|+|. +++.|+.+..+.+. |.... |..+ +..+...+.. ..+.++..+.+.
T Consensus 734 ~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~----l~~ls~~~~~~~~~~~~l~~l~~~ 809 (997)
T 1vsy_5 734 TSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRL----YAGLGYMPIRKNHVAAIVDYVCSS 809 (997)
T ss_dssp HHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHH----HHHTSSSCCCHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHH----HHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3678889987665543 447888888 88888888877654 44444 3333 3334332222 255566666555
Q ss_pred cC-CCCHHHHHHHHHHHHHHHhh----cCcCcccchHhHHHHHhhhhcCCc-HhHHHHHHHHHHHHHHhcCCCCCCCChH
Q 005891 205 AA-SPDEFTRLTAITWINEFVKL----GGDQLVPYYADILGAILPCISDKE-EKIRVVARETNEELRAIKADPADGFDVG 278 (671)
Q Consensus 205 ~~-s~d~~irl~al~WI~~~~~l----~~~~l~pflp~LLp~LL~~Lsd~~-~eIR~~A~~~n~~L~~~i~~~~~~~dl~ 278 (671)
.. ++.| .|..++..+..|.-- ....- -.++...++.+|.|+. .|||+.|..+...+++..+. .....
T Consensus 810 ~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~---~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~---~~~~~ 882 (997)
T 1vsy_5 810 NVALSSN-QTKLQLAFIQHFLSAELLQLTEEE---KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE---EQPLL 882 (997)
T ss_dssp TTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH---HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS---HHHHH
T ss_pred HhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc---hhhHH
Confidence 55 5689 999999887766642 12221 3688999999999999 99999999999888876411 01123
Q ss_pred hHHHHHHHhcCC------------CcHHHHHHHHHHHHHHHhhChhhH--hhhhhHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005891 279 PILSIATRQLSS------------EWEATRIEALHWISTLLNRHRTEV--LHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (671)
Q Consensus 279 ~il~~L~~~L~~------------~~~~tRiaaL~WL~~L~~~~p~~i--~~~l~~l~p~LL~~LsD~s~eV~~~~l~lL 344 (671)
+++..+.+.+.. .....|-+|...|+++...+|=.+ =+++++++..|-+..+|+.+ |...+-+++
T Consensus 883 ~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tl 961 (997)
T 1vsy_5 883 SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTI 961 (997)
T ss_dssp HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHH
T ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHH
Confidence 444444444422 011578999999999999999887 67888998888888888776 777777888
Q ss_pred HHHh
Q 005891 345 ACIA 348 (671)
Q Consensus 345 a~Is 348 (671)
+++-
T Consensus 962 seFk 965 (997)
T 1vsy_5 962 SEFK 965 (997)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.28 E-value=0.00037 Score=84.07 Aligned_cols=321 Identities=14% Similarity=0.157 Sum_probs=180.1
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcc----hhhhhHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHH
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFIIFFNQIFDALCKLSA-DSDANVQSAAHLLDRLVK 101 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~----~il~~f~eIf~~L~kL~~-D~d~~Vr~gA~~LdrllK 101 (671)
...++.+.+.+-....|.|..-..+|+|.+.-+....+. ..-..|+-+.|.|-+.++ +-.++... ....++.
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~---~W~~~i~ 579 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFE---IWSTLAW 579 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHH---HHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHH---HHHHHHH
Confidence 345777888888888999999999999998777644332 223567888888888887 45554321 2333333
Q ss_pred HhhcccchhhhhhhHHHHHHh--hc---C---CCH---HHHHHHH-HHHHHhhcCCchhHHhchHHHHHHHHHhcCCCCh
Q 005891 102 DIVTESDQFSIEEFIPLLRER--MN---V---LNP---YVRQFLV-GWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH 169 (671)
Q Consensus 102 dIv~e~~~f~L~~fIP~L~e~--i~---~---~np---~vR~~al-swL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~ 169 (671)
-+.... +...+=|++--. +. + .++ ..|..++ +.+..+.--.+ + +..++..++ ++.+..
T Consensus 580 ~~~~~~---DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~-~----~~~~l~~~~--l~h~y~ 649 (997)
T 1vsy_5 580 WLPAVV---DLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAP-D----VGKLFDELV--FDHPYD 649 (997)
T ss_dssp HHHHHS---CGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSC-C----CHHHHHHCC--SCCSCH
T ss_pred HHhcCC---ChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccc-c----HHHHHHHHH--hCCChH
Confidence 333322 233333333322 11 1 111 1233333 33333322111 1 344455555 788999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC-CCh----------------------HHHHH---HHHHhcC---------CC-----C
Q 005891 170 EIRQQADSALWEFLQEIKNSPS-VDY----------------------GRMAE---ILVQRAA---------SP-----D 209 (671)
Q Consensus 170 eVR~~a~~~L~~ll~~I~~~~~-~d~----------------------~~iI~---iLl~~~~---------s~-----d 209 (671)
.||.+..+.|..+...-- .+. .+. +.+.+ .+.+.+. ++ .
T Consensus 650 ~VRe~Ig~~L~~i~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s 728 (997)
T 1vsy_5 650 QVRQAVAKLLTTLVQNQS-NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKT 728 (997)
T ss_dssp HHHHHHHHHHHHHHHTSC-CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTS
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchH
Confidence 999998887765554331 110 011 12222 2222222 11 1
Q ss_pred HH--HHHHHHHHHHHHHhhc-CcCcccchHh-HHHHHhhhhcCCcH-hHHHH-HHHHHHHHHHhcCCCCCCCChHhHHHH
Q 005891 210 EF--TRLTAITWINEFVKLG-GDQLVPYYAD-ILGAILPCISDKEE-KIRVV-ARETNEELRAIKADPADGFDVGPILSI 283 (671)
Q Consensus 210 ~~--irl~al~WI~~~~~l~-~~~l~pflp~-LLp~LL~~Lsd~~~-eIR~~-A~~~n~~L~~~i~~~~~~~dl~~il~~ 283 (671)
.. .-.+.+.||...+.-+ ...+.||+|. ++|.++.+....+. |+... |..+...+.... -..-..+.++..
T Consensus 729 ~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~---~~~~~~~~~l~~ 805 (997)
T 1vsy_5 729 DYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP---IRKNHVAAIVDY 805 (997)
T ss_dssp HHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC---CCHHHHHHHHHH
Confidence 11 2357888997655433 2237888888 89989888776654 55544 333322221110 001113556667
Q ss_pred HHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHh-hhhhHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhcc---chHHHH
Q 005891 284 ATRQLS-SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDL---QHFRQL 357 (671)
Q Consensus 284 L~~~L~-~~~~~tRiaaL~WL~~L~~~~p~~i~-~~l~~l~p~LL~~LsD~s-~eV~~~~l~lLa~Is~~~---~~F~~f 357 (671)
+.+... +.+| +|.++|..+..+.-.--=-+. ..-..++..+++.|.|+. .|||..|..+|+-+.... ..-+.+
T Consensus 806 l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~l 884 (997)
T 1vsy_5 806 VCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSL 884 (997)
T ss_dssp SSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHH
T ss_pred HHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHH
Confidence 666555 5789 999999987655443110000 112468889999999999 999999999999886443 222345
Q ss_pred HHHHHhhc
Q 005891 358 VVFLVHNF 365 (671)
Q Consensus 358 m~~LL~lf 365 (671)
+..+-+.|
T Consensus 885 i~~f~~~~ 892 (997)
T 1vsy_5 885 IERFAKGL 892 (997)
T ss_dssp HHHHTTSS
T ss_pred HHHHHHHH
Confidence 55555555
No 104
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.24 E-value=0.26 Score=56.29 Aligned_cols=303 Identities=17% Similarity=0.116 Sum_probs=167.8
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhh-hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcc------------cchhh
Q 005891 45 DSRVRYYACEALYNIAKVVRGDFII-FFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE------------SDQFS 111 (671)
Q Consensus 45 d~rVR~~A~eaL~nI~Kv~~~~il~-~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e------------~~~f~ 111 (671)
-..=|..|+.++..++|..+.++-. -++.++..|-+-..|. ..||..-+.|-.++.....+ .+...
T Consensus 35 l~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~-e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (651)
T 3grl_A 35 LLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDS-EIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQF 113 (651)
T ss_dssp SHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHCCC--------------CHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccH-HHHHHHHHHHHHHhCCCCcccccccccccchHHHHHH
Confidence 4567888888888888766654432 2344444443322222 22333224433322210000 00001
Q ss_pred ------hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHh---chHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 005891 112 ------IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG---FLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (671)
Q Consensus 112 ------L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~---~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~l 182 (671)
-..-|+.|.+++...+-++|.+++..+..+...-+..... .-|.=++.|..+|.|+...||..+.-.|..+
T Consensus 114 ~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~L 193 (651)
T 3grl_A 114 TEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQAL 193 (651)
T ss_dssp HHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 1345899999999999999999999999998766554333 3456678888899999999999988877777
Q ss_pred HHHhhcCC-CCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc--C-c--ccchHhHHHHHhhhhcCCcHh
Q 005891 183 LQEIKNSP-SVD----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD--Q-L--VPYYADILGAILPCISDKEEK 252 (671)
Q Consensus 183 l~~I~~~~-~~d----~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~--~-l--~pflp~LLp~LL~~Lsd~~~e 252 (671)
.+.=.... -+. ++.++.++-..-....-.+-.-|+..+..+++..+. . | ..++|++.+.+ ...+++
T Consensus 194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL----~~~~~~ 269 (651)
T 3grl_A 194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF----EVGDEN 269 (651)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG----CCCSCS
T ss_pred hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh----CCCccc
Confidence 64211000 011 344444444333323446667788888888876421 1 1 11344443332 211111
Q ss_pred -----HHHHHHHHHHHHHHhcCCCCCC----------CChHhHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhChhhHh
Q 005891 253 -----IRVVARETNEELRAIKADPADG----------FDVGPILSIATRQLSSE--WEATRIEALHWISTLLNRHRTEVL 315 (671)
Q Consensus 253 -----IR~~A~~~n~~L~~~i~~~~~~----------~dl~~il~~L~~~L~~~--~~~tRiaaL~WL~~L~~~~p~~i~ 315 (671)
=|..-..+.-.+.++.-.+++. +.-..++..|.+.+.++ ...+|..|+..+..+..+.+..-.
T Consensus 270 ~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~ 349 (651)
T 3grl_A 270 SGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQD 349 (651)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 0111111111223332222221 00124556666666654 577899999999999988765322
Q ss_pred hh----------hhHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhccc
Q 005891 316 HF----------LNDIFDTLLKALSDPS-DEVVLLVLEVHACIAKDLQ 352 (671)
Q Consensus 316 ~~----------l~~l~p~LL~~LsD~s-~eV~~~~l~lLa~Is~~~~ 352 (671)
.+ .+-++..|+..+.+.. ..+|-.++.++..+..+..
T Consensus 350 ~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 350 YFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp HHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 11 1345555666666554 6778889999999885443
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.85 E-value=0.03 Score=56.29 Aligned_cols=139 Identities=17% Similarity=0.080 Sum_probs=101.0
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhh
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN-MLSDSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~-lL~D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
+.+.+.++++..++..+..-.||..++..+..+ + ..++.|+-+-. +..|.+=.||..+..+++.++...+
T Consensus 66 ~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~ 136 (240)
T 3l9t_A 66 SNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE 136 (240)
T ss_dssp HSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence 345788889998888888889999999988776 2 23566666666 6678899999999898888886332
Q ss_pred cCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHH
Q 005891 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (671)
Q Consensus 188 ~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L 264 (671)
.+..++.+..-+.++|+.+|+.|++-+.-.+.. + .+..-...++|.+-+...|++.-||..-..+...+
T Consensus 137 ------pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 137 ------YKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDI 205 (240)
T ss_dssp ------TTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 234677888888999999999888855433322 1 22233566788888888899999988766554443
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.73 E-value=0.0055 Score=61.72 Aligned_cols=189 Identities=15% Similarity=0.057 Sum_probs=118.8
Q ss_pred HHHHHHHhcCCCCH--HHHHHHHHHHHHHHhhcCc--CcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCC
Q 005891 197 MAEILVQRAASPDE--FTRLTAITWINEFVKLGGD--QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (671)
Q Consensus 197 iI~iLl~~~~s~d~--~irl~al~WI~~~~~l~~~--~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~ 272 (671)
-+|.+++.++++++ .++..|..++..++.-.+. ..+ .-...+|.+...|...++++++.|..+...+..--.+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I-~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRV-NQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH-HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 46778888888877 8888888898877754321 111 234667999999999999999999888766642100000
Q ss_pred CCCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhcC-------C---------CCHH
Q 005891 273 DGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-------D---------PSDE 335 (671)
Q Consensus 273 ~~~dl~~il~~L~~~L~-~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~Ls-------D---------~s~e 335 (671)
..+--...++.|.+.|. +.+..+|..|...|..|......+.. ....-+|.|...+. | .+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~-i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH-HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH-HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 00001245677777776 45778888887666666654432221 12345777776542 1 2568
Q ss_pred HHHHHHHHHHHHhhccchHHH-------HHHHHHhhccc-------cchhhhhHHHHHHHHHhccCC
Q 005891 336 VVLLVLEVHACIAKDLQHFRQ-------LVVFLVHNFRV-------DNSLLEKRGALIIRRLCVLLD 388 (671)
Q Consensus 336 V~~~~l~lLa~Is~~~~~F~~-------fm~~LL~lf~~-------d~~lLe~Rg~~IIR~Lc~~L~ 388 (671)
|...+..+|..+|+.++..++ .+..|+.+++. +.+..|. +--++|+||..|.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En-~v~~L~nLs~~~~ 232 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATEN-CVCILHNLSYQLE 232 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHH-HHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHH-HHHHHHHHHhhhc
Confidence 999999999999964434444 33444454432 3344443 3558999998764
No 107
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.51 E-value=0.025 Score=56.91 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=100.6
Q ss_pred hhHHHHHhccCCCCH--HHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhc
Q 005891 32 QIVPPVLNSFSDQDS--RVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (671)
Q Consensus 32 ~Ii~pvL~~l~D~d~--rVR~~A~eaL~nI~Kv~---~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~ 105 (671)
.-+|+++..+..+|. .++..|+.++.++++.- +..+.. ...+|.|.+++..+++.|+..| .+|..+..+--.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~--~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ--LRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 357888899987776 89999999999988532 222221 2567999999998899999888 777776552111
Q ss_pred ccchhhhhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcC-------C---------CC
Q 005891 106 ESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-------D---------SS 168 (671)
Q Consensus 106 e~~~f~L~~fIP~L~e~i~-~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~-------D---------~~ 168 (671)
......-.--||.|.+.+. ..++.++..++..+..+........ .....-++.|..++. | .+
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccch
Confidence 0111222345888888887 5799999999999999987654321 112233555554432 1 25
Q ss_pred hHHHHHHHHHHHHHH
Q 005891 169 HEIRQQADSALWEFL 183 (671)
Q Consensus 169 ~eVR~~a~~~L~~ll 183 (671)
.+|+..|..||..+.
T Consensus 165 ~~v~~na~~~L~nLs 179 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMS 179 (233)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 689998888888775
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.49 E-value=0.23 Score=54.56 Aligned_cols=166 Identities=14% Similarity=0.089 Sum_probs=115.5
Q ss_pred hHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 005891 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (671)
Q Consensus 148 ~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l 226 (671)
.+..+-.++..-|- ..-.+..+++.|.+.+.+|-+.++ + -+.-++.++..|.+.|..||..|+.-+..+|.
T Consensus 23 k~~~~~~~y~~Il~--~~kg~~k~K~LaaQ~I~kffk~FP-----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck- 94 (507)
T 3u0r_A 23 QVGQHKDAYQVILD--GVKGGTKEKRLAAQFIPKFFKHFP-----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFAT- 94 (507)
T ss_dssp GGGGGHHHHHHHHH--GGGSCHHHHHHHHHHHHHHGGGCG-----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC-
T ss_pred cccccHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh-
Confidence 34445555444332 223458889999898988887764 4 35678899999999999999988887765553
Q ss_pred cCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 005891 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 306 (671)
Q Consensus 227 ~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L 306 (671)
+ .+++++..++.+.|.-.++.-+.+..++.-++++. |-..++..+..++....+.+|+.++.+|..=
T Consensus 95 --~---~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~--------Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 95 --G---ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM--------DAKGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp --T---TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --h---hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc--------ChHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 3 57999999999999988877777777776666655 3456777777777666789999999999766
Q ss_pred HhhChhhHhh-hh-hHHHHHHHHhcCCCCH
Q 005891 307 LNRHRTEVLH-FL-NDIFDTLLKALSDPSD 334 (671)
Q Consensus 307 ~~~~p~~i~~-~l-~~l~p~LL~~LsD~s~ 334 (671)
....+.++.. -. +-++..+.+.|.|-+.
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 6554444321 11 1244555566666543
No 109
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.44 E-value=0.2 Score=50.97 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=90.0
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH---
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE--- 185 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~--- 185 (671)
..-++.|+|.+.+...+.+..+|+++++.|...... -..+.+..++.|..++.|.++.|-+.+..+...+-..
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~ 123 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQ 123 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999998899999999999999876522 2468899999999999999999999888887766443
Q ss_pred -hhcCCCCC---------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 005891 186 -IKNSPSVD---------YGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (671)
Q Consensus 186 -I~~~~~~d---------~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l 226 (671)
+-..+..+ +..+-..++....+.+..+|..|+..+..++..
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 33333321 345666788888888999999999999888754
No 110
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.14 E-value=0.023 Score=65.85 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=86.1
Q ss_pred hHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcchhhhhHHHHHH-HHHHhhcCCchHHHHHH-HHHHHHHHHhhccc-ch
Q 005891 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFD-ALCKLSADSDANVQSAA-HLLDRLVKDIVTES-DQ 109 (671)
Q Consensus 33 Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~-~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~-~~ 109 (671)
-+.|++..+..+|+..|..||.++.||+......-+..-..++. .+..++.|++.+||.+| .+|..++.+--.+. ..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 34567788999999999999999999985433222211234454 45678999999999999 78877764311100 00
Q ss_pred hhhhhhHHHHHHhhc-------C-------CCHH-------HHHHHHHHHHHhhcCCchhH---H--hchHHHHHHHHHh
Q 005891 110 FSIEEFIPLLRERMN-------V-------LNPY-------VRQFLVGWITVLDSVPDIDM---L--GFLPDFLDGLFNM 163 (671)
Q Consensus 110 f~L~~fIP~L~e~i~-------~-------~np~-------vR~~alswL~~L~~ip~~~l---i--~~Lp~fL~gLf~l 163 (671)
..-..++|.|...+. . .... +-..+++.+..+....+..+ . .-+|.++..|...
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 001124444444432 1 1111 22234455555554443322 1 2344444433321
Q ss_pred cCCCChHHHHHHHHHHHHHHH
Q 005891 164 LSDSSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 164 L~D~~~eVR~~a~~~L~~ll~ 184 (671)
.....+|+..|.+||..+.+
T Consensus 195 -~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 195 -DIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp -CCSCHHHHHHHHHHHHHHHT
T ss_pred -CCCcHHHHHHHHHHHHHHhc
Confidence 22457899999999988765
No 111
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.46 E-value=2.6 Score=42.78 Aligned_cols=194 Identities=14% Similarity=0.086 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC
Q 005891 130 VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD 209 (671)
Q Consensus 130 vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d 209 (671)
.|...+.-...+.--.+ -.++|+|+++++.+..|++.+||+-....+.+.++.= + .-...+++.|...+++.+
T Consensus 31 ~kl~~L~qa~el~~~~d---p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---~-~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSC---AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---V-ELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHTTTT---GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---G-GGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHccC---HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHcCCC
Confidence 45444444444322222 2478999999999999999999998766554444211 0 123455555555555555
Q ss_pred HHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcC
Q 005891 210 EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS 289 (671)
Q Consensus 210 ~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~ 289 (671)
+.+...++..... +-|.++..+.... ++-+...++++.+ ..+-..+...+.
T Consensus 104 ~~V~K~~I~~~~~---------------iY~~~l~~i~~~~-~~~~~~~~~W~~m-------------~~lK~~Il~~~~ 154 (257)
T 3gs3_A 104 AQVIKRVIQACGS---------------IYKNGLQYLCSLM-EPGDSAEQAWNIL-------------SLIKAQILDMID 154 (257)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHHHHTTSS-SCCHHHHHHHHHH-------------HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHhcCC-CCcchHHHHHHHH-------------HHHHHHHHHHHc
Confidence 5544443332221 1122222222110 0001112222222 233334445566
Q ss_pred CCcHHHHHHHHHHHHHHHhhC---------------------------hhhHhhhhhHHHHHHHHhcCCC--CHHHHHHH
Q 005891 290 SEWEATRIEALHWISTLLNRH---------------------------RTEVLHFLNDIFDTLLKALSDP--SDEVVLLV 340 (671)
Q Consensus 290 ~~~~~tRiaaL~WL~~L~~~~---------------------------p~~i~~~l~~l~p~LL~~LsD~--s~eV~~~~ 340 (671)
+.+..+|++|++.+..+.... +..+..--.+++..|++.+.++ ++-.+..+
T Consensus 155 s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~ 234 (257)
T 3gs3_A 155 NENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIAC 234 (257)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHH
Confidence 777888888888777665321 1223333446777777766654 44445567
Q ss_pred HHHHHHHhhcc-chHHHHHH
Q 005891 341 LEVHACIAKDL-QHFRQLVV 359 (671)
Q Consensus 341 l~lLa~Is~~~-~~F~~fm~ 359 (671)
+..|+-|.... .+...++.
T Consensus 235 lnsL~~Iak~RP~~~~rIl~ 254 (257)
T 3gs3_A 235 TSSLCTIAKMRPIFMGAVVE 254 (257)
T ss_dssp HHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHH
Confidence 77788877543 33344443
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.21 E-value=4.7 Score=44.36 Aligned_cols=262 Identities=13% Similarity=0.115 Sum_probs=151.3
Q ss_pred HHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch
Q 005891 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (671)
Q Consensus 75 f~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L 153 (671)
+..+...+.-+ +.+|.-| ..+.+..|.... . -+.-|.-+..++.|.+..||..++--|-.++.- .++
T Consensus 31 y~~Il~~~kg~-~k~K~LaaQ~I~kffk~FP~-l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i 98 (507)
T 3u0r_A 31 YQVILDGVKGG-TKEKRLAAQFIPKFFKHFPE-L----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENL 98 (507)
T ss_dssp HHHHHHGGGSC-HHHHHHHHHHHHHHGGGCGG-G----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCH
T ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHHhhChh-h----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhh
Confidence 44444445444 4555555 888888885553 2 233455666778899999999887776666533 779
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCccc
Q 005891 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (671)
Q Consensus 154 p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~p 233 (671)
+.+.+.|.++|.-..+..+.++.++|..+++ .|-..-+..+..++..+++.+|..++..|..=+.-.+.+++.
T Consensus 99 ~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk-------~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~ 171 (507)
T 3u0r_A 99 PRVADILTQLLQTDDSAEFNLVNNALLSIFK-------MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLT 171 (507)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHh-------cChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhcc
Confidence 9999999999988888888999998888887 555556666666666678999999999997655544444321
Q ss_pred -chH-hHHHHHhhhhcCCcH-hHHHHHHHHHHHHHHhcCCC---CCCCChHhHHHHHHHhcC------CCcHH---HHHH
Q 005891 234 -YYA-DILGAILPCISDKEE-KIRVVARETNEELRAIKADP---ADGFDVGPILSIATRQLS------SEWEA---TRIE 298 (671)
Q Consensus 234 -flp-~LLp~LL~~Lsd~~~-eIR~~A~~~n~~L~~~i~~~---~~~~dl~~il~~L~~~L~------~~~~~---tRia 298 (671)
-.. -+...+.+.|.|-.. |.. .+|++.... .+.-..+++++.+.++.. ..+.. --+.
T Consensus 172 ~E~E~~i~~~ikK~L~DVT~~EF~--------L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~ 243 (507)
T 3u0r_A 172 KEVEELILTESKKVLEDVTGEEFV--------LFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQ 243 (507)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHH--------HHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHH--------HHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHH
Confidence 111 133455555544322 221 122222110 000113577777777632 11221 1222
Q ss_pred HH-HHHHHHHhhCh-hhHhhhhhHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhh--c-----cchHHHHHHHHHhh
Q 005891 299 AL-HWISTLLNRHR-TEVLHFLNDIFDTLLKALSDP-----SDEVVLLVLEVHACIAK--D-----LQHFRQLVVFLVHN 364 (671)
Q Consensus 299 aL-~WL~~L~~~~p-~~i~~~l~~l~p~LL~~LsD~-----s~eV~~~~l~lLa~Is~--~-----~~~F~~fm~~LL~l 364 (671)
|+ +.+-.+..+.. .++. .-+..-+++.+++= .++.....+++++.++. + .+.+..+...|++.
T Consensus 244 C~~~ALP~FS~~v~StkFv---~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~y 320 (507)
T 3u0r_A 244 CTRQAVPLFSKNVHSTRFV---TYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEY 320 (507)
T ss_dssp HHHHHGGGCBTTBCCHHHH---HHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCChHHHH---HHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHH
Confidence 22 23333333322 2233 33333344444442 22366778899999983 1 23556666666665
Q ss_pred cc
Q 005891 365 FR 366 (671)
Q Consensus 365 f~ 366 (671)
++
T Consensus 321 mP 322 (507)
T 3u0r_A 321 MP 322 (507)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.12 E-value=0.36 Score=51.97 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=89.6
Q ss_pred hhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh--
Q 005891 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI-- 186 (671)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I-- 186 (671)
..-++.|+|.+.+...+++..+|+++++.|..... .-..+++..++.|..++.|.++.|-+.+..|...+-..+
T Consensus 58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~----~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK----RDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999999999987664 234567999999999999999999998888877665322
Q ss_pred --hcCCCCC---------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 005891 187 --KNSPSVD---------YGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (671)
Q Consensus 187 --~~~~~~d---------~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l 226 (671)
-+.+..+ +..+-..++....+.++-+|..|+..+..++..
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 2233321 345666778888888899999999999888765
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.06 E-value=4.5 Score=43.37 Aligned_cols=222 Identities=15% Similarity=0.153 Sum_probs=141.1
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhc-----
Q 005891 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK----- 268 (671)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i----- 268 (671)
++++++.|++...+++.++|..++..|.+.+.- -..+++++++.+...+.|.++.+-+.+..+...+...+
T Consensus 61 l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 61 LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999888888777653 23358999999999999999988888877777665442
Q ss_pred CCCCC------CCC-hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh------------------------------
Q 005891 269 ADPAD------GFD-VGPILSIATRQLSSEWEATRIEALHWISTLLNRHR------------------------------ 311 (671)
Q Consensus 269 ~~~~~------~~d-l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p------------------------------ 311 (671)
..+.. .|+ +..+-+.+...+.+.+..+|++|++.+..+.....
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~ 216 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQY 216 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCH
Confidence 22221 233 24555566777888999999999998887664221
Q ss_pred hhHhhhhhHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhh-ccchHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC
Q 005891 312 TEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (671)
Q Consensus 312 ~~i~~~l~~l~p~LL~~LsD~--s~eV~~~~l~lLa~Is~-~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~ 388 (671)
..+..--.++|..|++.+.++ ++-.+..++..|+-|.. ...+...++..|+. |..+-..-..++. ++-+
T Consensus 217 ~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~-l~~n~p~t~sk~q--vkSv----- 288 (386)
T 3o2t_A 217 NVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYET-LHANLPPTLAKSQ--VSSV----- 288 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH-HHHCC----CGGG--HHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHh-hcCCCCccHHHHH--HHHH-----
Confidence 122223457888999998864 35455567788888885 45566667776665 3333211001100 0100
Q ss_pred hHHH-HHHHHHhhcccCChhHHHHHHHHHHHHhccchhHHH
Q 005891 389 AERV-YRELSTILEGEADLDFACTMVQALNLILLTSSELSE 428 (671)
Q Consensus 389 ~E~I-y~~la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~ 428 (671)
|+- =-.|..+|....-.+|...+.+.|..+--+-.|..+
T Consensus 289 -~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~s~~Ei~~ 328 (386)
T 3o2t_A 289 -RKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIAR 328 (386)
T ss_dssp -HHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTCCHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHcccHHHHHH
Confidence 111 112333444444568888888888775555555553
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=94.82 E-value=0.55 Score=54.21 Aligned_cols=73 Identities=18% Similarity=0.113 Sum_probs=53.9
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchh-HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~-li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
+.++|+| +.+.+.++..|.+++..|.++..-+... ++.+-..+..-+-.+|.|++.+||.+|..+|+.+..+-
T Consensus 34 ~~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 34 DKILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HTTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 4567766 5589999999999999999998643322 22222223333456899999999999999999888654
No 116
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.18 E-value=6.6 Score=41.29 Aligned_cols=230 Identities=13% Similarity=0.160 Sum_probs=135.8
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-c-----hhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP-D-----IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip-~-----~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I 186 (671)
..++..|...+..-+...|.-+....+.+..-. + .+-+..=|++++.|+..-.+++ +--. .+..++++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d--iAl~----~G~mLRec 150 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE--IALN----CGIMLREC 150 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT--THHH----HHHHHHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch--hHhH----HHHHHHHH
Confidence 456778888888889999999988777664322 1 1222223777777776665443 2222 23344433
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHH
Q 005891 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (671)
Q Consensus 187 ~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~ 266 (671)
- .++.+..+++. .+.+. -++..+..+..+|-.-|-.+...++.
T Consensus 151 i-----r~e~la~~iL~------------------------~~~f~--------~fF~yv~~~~FdiasDAf~TfkelLt 193 (341)
T 1upk_A 151 I-----RHEPLAKIILW------------------------SEQFY--------DFFRYVEMSTFDIASDAFATFKDLLT 193 (341)
T ss_dssp H-----TSHHHHHHHHH------------------------SGGGG--------HHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred H-----HhHHHHHHHhc------------------------cHHHH--------HHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 1 12333333332 11111 12234455556654444333333321
Q ss_pred hcCCC-CC--CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh--ChhhHhhhhh--HHHHHHHHhcCCCCHHHHHH
Q 005891 267 IKADP-AD--GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR--HRTEVLHFLN--DIFDTLLKALSDPSDEVVLL 339 (671)
Q Consensus 267 ~i~~~-~~--~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~--~p~~i~~~l~--~l~p~LL~~LsD~s~eV~~~ 339 (671)
--+.. ++ .-+|+.+.......+.++++-||-.++..|+.+..- ...-|..|.+ .-+..++..|.|++..|...
T Consensus 194 ~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~E 273 (341)
T 1upk_A 194 RHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFE 273 (341)
T ss_dssp SSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhh
Confidence 10000 00 126788888888888999999999999999988765 4445666655 46778889999999999999
Q ss_pred HHHHHHHHhhccch-------H---HHHHHHHHhhcc----ccchhhhhHHHHHHHHHhcc
Q 005891 340 VLEVHACIAKDLQH-------F---RQLVVFLVHNFR----VDNSLLEKRGALIIRRLCVL 386 (671)
Q Consensus 340 ~l~lLa~Is~~~~~-------F---~~fm~~LL~lf~----~d~~lLe~Rg~~IIR~Lc~~ 386 (671)
|..+..-+..|+.- + +.=+...+.-|. +|....++| +++|+++-.+
T Consensus 274 AFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK-~~lI~~I~~L 333 (341)
T 1upk_A 274 AFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEK-TYLVKQIRDL 333 (341)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHH-HHHHHHHHTC
T ss_pred hhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHH-HHHHHHHHhC
Confidence 99988877743211 0 112222233343 345677777 8888888665
No 117
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=93.90 E-value=2.3 Score=44.53 Aligned_cols=216 Identities=11% Similarity=0.143 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhhcCc---CcccchHhHHHHHhhhhcCCcHhHH-----HHHHHHHHHHHHhcCCCCCCCChHhHHHH
Q 005891 212 TRLTAITWINEFVKLGGD---QLVPYYADILGAILPCISDKEEKIR-----VVARETNEELRAIKADPADGFDVGPILSI 283 (671)
Q Consensus 212 irl~al~WI~~~~~l~~~---~l~pflp~LLp~LL~~Lsd~~~eIR-----~~A~~~n~~L~~~i~~~~~~~dl~~il~~ 283 (671)
+|.+.+..+..+++-.++ ..-.++|.++.+++.--....|+.| .........+-+.+.+ .+..|++.
T Consensus 45 vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~-----~vp~Il~~ 119 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITA-----EIPQIFDA 119 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGG-----GHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhh-----hHHHHHHH
Confidence 445555555555554332 1234678888777765555555444 3333333344333321 12333332
Q ss_pred H----HHhcC---CCcHHHHHHHHHHHHHHHhhChhhHhhhhhHH----HHHHHHhcCCCCHHHHHHHHHHHHH----Hh
Q 005891 284 A----TRQLS---SEWEATRIEALHWISTLLNRHRTEVLHFLNDI----FDTLLKALSDPSDEVVLLVLEVHAC----IA 348 (671)
Q Consensus 284 L----~~~L~---~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l----~p~LL~~LsD~s~eV~~~~l~lLa~----Is 348 (671)
+ ..+.. .+..+.|+.=..+|.++...|...+...-+.- +..++=..+++..+|-...+.++.. ++
T Consensus 120 VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 120 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 1 22222 35688999999999999999999887655554 4555555899999998888876544 43
Q ss_pred hc----cchHHH----HHHHHHhhc-cccchhhhhHHHHHHHHHhccC----------------ChHHHHHHHHHhhccc
Q 005891 349 KD----LQHFRQ----LVVFLVHNF-RVDNSLLEKRGALIIRRLCVLL----------------DAERVYRELSTILEGE 403 (671)
Q Consensus 349 ~~----~~~F~~----fm~~LL~lf-~~d~~lLe~Rg~~IIR~Lc~~L----------------~~E~Iy~~la~iL~~~ 403 (671)
.+ ..+|+. +++..+.-+ +++++--=+.-..|+++|.... |.+-+...+++.|.+.
T Consensus 200 ~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~ 279 (321)
T 1w9c_A 200 QEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSA 279 (321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHh
Confidence 21 233444 444443322 3333322222355777777222 3456666777766542
Q ss_pred ---CChhHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 005891 404 ---ADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (671)
Q Consensus 404 ---~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~ 435 (671)
-...=+..+|+-|-. ...+..+||+.||+
T Consensus 280 Fp~l~~~qi~~fv~glf~---~~~d~~~Fk~~lrD 311 (321)
T 1w9c_A 280 FPHLQDAQVKLFVTGLFS---LNQDIPAFKEHLRD 311 (321)
T ss_dssp CTTSCHHHHHHHHHHHHH---TTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHH
Confidence 122223333443332 24577888888887
No 118
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=93.71 E-value=0.97 Score=51.60 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=64.4
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh---hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccch
Q 005891 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL---NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH 353 (671)
Q Consensus 279 ~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l---~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~~~ 353 (671)
+-++.|...+.+.+..+|..+++-|..|....|+.+...+ +.-+|.|+..|+|+.+-||..++-+|..++.+...
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence 4567788899999999999999999999999988665443 36789999999999999999999999999965444
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=92.08 E-value=4.5 Score=39.34 Aligned_cols=150 Identities=13% Similarity=0.208 Sum_probs=95.9
Q ss_pred hhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCC------CCHHHHHHHHHHH
Q 005891 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS------PDEFTRLTAITWI 220 (671)
Q Consensus 147 ~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s------~d~~irl~al~WI 220 (671)
.|+..|+.++.+.+.. +.|++| ++.+..+++ +..++|+++.+..+ .|...-...+..+
T Consensus 7 ~Elq~yf~~It~a~~~-------~~r~~a-------L~sL~~D~g--L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 7 KELQLYFDKILSMIKS-------DMKDIA-------IECLEKESG--LQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHHHHTS-------TTHHHH-------HHHHHHCSS--CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------HHHHHH-------HHHHhcCCC--hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4566677777664443 345544 334443333 44555555543322 2444334455566
Q ss_pred HHHHhhcCcCcccchHhHHHHHhhhhcCC---cHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCC--cHHH
Q 005891 221 NEFVKLGGDQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE--WEAT 295 (671)
Q Consensus 221 ~~~~~l~~~~l~pflp~LLp~LL~~Lsd~---~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~--~~~t 295 (671)
..+++-..-.+-||+..++|.++.|+... ...+|+.|.+....+.+-.++....+ -..+...+.+.+.|+ +..+
T Consensus 71 ~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L-~~RI~~tl~k~l~dp~~~l~t 149 (196)
T 4atg_A 71 FSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTL-APRVLKTLKGVWMDPNRSEDS 149 (196)
T ss_dssp HHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTH-HHHHHHHHHHHHTCTTSCHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchH-HHHHHHHHHHHHcCCCCChHH
Confidence 66666666678899999999999998643 23799999999998888876522221 257888888888754 5778
Q ss_pred HHHHHHHHHHHHhhChhh
Q 005891 296 RIEALHWISTLLNRHRTE 313 (671)
Q Consensus 296 RiaaL~WL~~L~~~~p~~ 313 (671)
...|+.-|..+-...-..
T Consensus 150 ~YGAi~GL~~lG~~~vr~ 167 (196)
T 4atg_A 150 QYGALYCLSILSKNVVNT 167 (196)
T ss_dssp HHHHHHHHHHHCHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 888888877776654433
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=91.78 E-value=2.5 Score=41.15 Aligned_cols=141 Identities=13% Similarity=0.217 Sum_probs=95.8
Q ss_pred cchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhc------CCCHHHHHHHHHH
Q 005891 64 RGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN------VLNPYVRQFLVGW 137 (671)
Q Consensus 64 ~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~------~~np~vR~~alsw 137 (671)
..|...||.+|-.++.. ..|++| |..+ -++ ..+..++|.+...+. -.|...=..++..
T Consensus 6 S~Elq~yf~~It~a~~~-------~~r~~a--L~sL----~~D---~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~ 69 (196)
T 4atg_A 6 PKELQLYFDKILSMIKS-------DMKDIA--IECL----EKE---SGLQQLVPYFIQHISELILKSFKEAEVLKTCIAL 69 (196)
T ss_dssp CHHHHHHHHHHHHHHTS-------TTHHHH--HHHH----HHC---SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-------HHHHHH--HHHH----hcC---CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 34666788888888754 346555 3333 222 246666666665553 2466666777888
Q ss_pred HHHhhcCCchhHHhchHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCC--HH
Q 005891 138 ITVLDSVPDIDMLGFLPDFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPD--EF 211 (671)
Q Consensus 138 L~~L~~ip~~~li~~Lp~fL~gLf~lL~D---~~~eVR~~a~~~L~~ll~~I~~~~~~d-~~~iI~iLl~~~~s~d--~~ 211 (671)
+.-+..-|...+-+|+..+++.+..++-. ....+|.-|.+.|+.+++..+... .. -+.++..+.....+++ ..
T Consensus 70 ~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~~~l~ 148 (196)
T 4atg_A 70 YFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPNRSED 148 (196)
T ss_dssp HHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCCCChH
Confidence 88888888889999999999998865521 122899999999999999987532 22 4778888888887764 34
Q ss_pred HHHHHHHHHH
Q 005891 212 TRLTAITWIN 221 (671)
Q Consensus 212 irl~al~WI~ 221 (671)
...-|+.-+.
T Consensus 149 t~YGAi~GL~ 158 (196)
T 4atg_A 149 SQYGALYCLS 158 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444555543
No 121
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.70 E-value=3.2 Score=44.47 Aligned_cols=175 Identities=10% Similarity=0.107 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc--c-hHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHH
Q 005891 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAKDL--Q-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYREL 396 (671)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~~--~-~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~l 396 (671)
..+..+..+|..+.+.++..++++|+.+|.-. . -++.++..+-. +.. .. -.. -|..+
T Consensus 162 ~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~-~~~-~~-e~~-----------------RF~~l 221 (383)
T 3eg5_B 162 EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTE-RAE-MD-EVE-----------------RFQPL 221 (383)
T ss_dssp SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHH-HHH-HH-TSC-----------------TTHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHH-HHH-hC-CCC-----------------cHHHH
Confidence 45678888999999999999999999999422 3 48888888755 332 11 011 24445
Q ss_pred HHhhcccCChhHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHH----
Q 005891 397 STILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHH---- 472 (671)
Q Consensus 397 a~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lslcll~~~y~~---- 472 (671)
-+.|..+.+.++.-..++..|.++-+.+++ ++|..||+.+..-.-..++..| +. +.|+-=. -=.+.|+.
T Consensus 222 v~~L~~~~~~e~~~~~m~lIN~li~~~~dl-~~R~~lR~ef~~~Gl~~il~~l-r~-~~~~~L~----~Qi~~fe~~~~e 294 (383)
T 3eg5_B 222 LDGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRSELMRLGLHQVLQEL-RE-IENEDMK----VQLCVFDEQGDE 294 (383)
T ss_dssp HHTTSTTSCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHTTHHHHHHHH-TT-SCCHHHH----HHHHHHHHHHHH
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHCChHHHHHHH-hc-CCChhHH----HHHHHHHHHHHH
Confidence 555666688999989999999888776554 4566666422212222333332 11 1122111 11122222
Q ss_pred -HHHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHhhcCCCCChhHHHHHHHHhhhc
Q 005891 473 -ASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLL 532 (671)
Q Consensus 473 -a~~l~~~~~~~e~~~~~l~q~d~LvqllEspif~~lRl~Ll~~~~~p~L~k~L~gllmlL 532 (671)
-.++..+|.++.+..+. .+ .+|..|+-++=.-..+||+.-.|..||++-
T Consensus 295 D~~el~~r~~~~~~d~~d------~~-----~~~~~l~~~~~~t~a~~~flSiLQhLlli~ 344 (383)
T 3eg5_B 295 DFFDLKGRLDDIRMEMDD------FG-----EVFQIILNTVKDSKAEPHFLSILQHLLLVR 344 (383)
T ss_dssp HHHHHHHHHHHHHHHCCS------HH-----HHHHHHHHHTTTSTTHHHHHHHHHHTTCSC
T ss_pred hHHHHHhhccccCcCcCC------HH-----HHHHHHHHHhcCCcchHHHHHHHHHHHhcc
Confidence 12334444322111111 11 145556666666677899999999888764
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.35 E-value=19 Score=43.62 Aligned_cols=168 Identities=11% Similarity=0.067 Sum_probs=105.2
Q ss_pred HHHHHHHhcCC----CChHHHHHHHHHHHHHHHHhhcC-CCC---ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 005891 156 FLDGLFNMLSD----SSHEIRQQADSALWEFLQEIKNS-PSV---DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (671)
Q Consensus 156 fL~gLf~lL~D----~~~eVR~~a~~~L~~ll~~I~~~-~~~---d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~ 227 (671)
.++.++.++.+ .++.+|+.|.-+++.++...-.. +.. .++.+.+.+.+.+...+++-+..++..|+++-
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g--- 468 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--- 468 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC---
Confidence 44555555554 46789999988898888765332 211 26778888888887777776666666665432
Q ss_pred CcCcccchHhHHHHHhhhhcC-------CcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhc--CCCcHHHHHH
Q 005891 228 GDQLVPYYADILGAILPCISD-------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL--SSEWEATRIE 298 (671)
Q Consensus 228 ~~~l~pflp~LLp~LL~~Lsd-------~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L--~~~~~~tRia 298 (671)
.|..++.+.+++.. ....||..|..+...+. . .+-..+-+++.+.+ ...+.+.|++
T Consensus 469 -------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~---~-----~~p~~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 469 -------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA---K-----RDPRKVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp -------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG---G-----TCHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred -------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh---h-----hchHHHHHHHHHHhcCCCCChHHHHH
Confidence 24566777777642 13467777766543221 1 11234666777777 4567889999
Q ss_pred HHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
|+.-| .+..|..-. +..+... .-.|++.+|..-+...+..++.
T Consensus 534 A~~~L---m~t~P~~~~--l~~ia~~---l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 534 SCIVF---FESKPSVAL--VSMVAVR---LRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHH---HHTCCCHHH--HHHHHHH---HTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHH---HHHCcCHHH--HHHHHHH---HhhCchHHHHHHHHHHHHHHHh
Confidence 87654 455554322 2333322 2357889999988888888884
No 123
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.77 E-value=3.9 Score=43.85 Aligned_cols=175 Identities=9% Similarity=0.139 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccc-hHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHHH
Q 005891 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQ-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYREL 396 (671)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~--~~~-~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~l 396 (671)
..+..+..+|.-+.+.++..++++|+-+|- ++. .++.++..+-..-.. .++ .-|..+
T Consensus 100 ~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~-----~e~---------------~RF~~l 159 (386)
T 2bnx_A 100 EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM-----DEV---------------ERFQPL 159 (386)
T ss_dssp SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH-----HTS---------------CTTHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh-----Cch---------------hhHHHH
Confidence 456788889988889999999999999994 222 388888887653110 111 113334
Q ss_pred HHhhcccCChhHHHHHHHHHHHHhccchhHHHHHHHHHhccCCcchHHHHHHHHHhhccChHHHHHHHHHHhhhHHH---
Q 005891 397 STILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHA--- 473 (671)
Q Consensus 397 a~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~vs~lslcll~~~y~~a--- 473 (671)
-+.+....+.++.-..++..|.++-+.++ .++|..||+.+..-.=..++..| +.+ .|+ . |=-=-+.|+..
T Consensus 160 v~~l~~~~~~e~~~a~m~lIN~lv~~~~d-l~~R~~LR~Ef~~~GL~~il~~L-r~~-~~~--~--L~~Qi~~fe~~~~e 232 (386)
T 2bnx_A 160 LDGLKSGTSIALKVGCLQLINALITPAEE-LDFRVHIRSELMRLGLHQVLQEL-REI-ENE--D--MKVQLCVFDEQGDE 232 (386)
T ss_dssp HHHTSTTSCHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHTTHHHHHHHH-TTC-CCH--H--HHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCChHHHHHHH-hcc-CCh--h--HHHHHHHHHHHHHH
Confidence 44445568899999999999988887766 45677777532222223333333 221 222 1 11112223322
Q ss_pred --HHHHHHhhccccchHHHHHHHHHHHHhhchhhHHHHHhhcCCCCChhHHHHHHHHhhhc
Q 005891 474 --SAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLL 532 (671)
Q Consensus 474 --~~l~~~~~~~e~~~~~l~q~d~LvqllEspif~~lRl~Ll~~~~~p~L~k~L~gllmlL 532 (671)
-++.+.|.++++..+... -+|..+.-++=+-+.+||+.-.|..||++-
T Consensus 233 D~~el~~r~~~i~~d~~d~~-----------~~~~~l~~~~~~t~~~~~flSiLQhLLli~ 282 (386)
T 2bnx_A 233 DFFDLKGRLDDIRMEMDDFG-----------EVFQIILNTVKDSKAEPHFLSILQHLLLVR 282 (386)
T ss_dssp HHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHTTSTHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhhhcCCCCCCCHH-----------HHHHHHHHHHcCCCchhHHHHHHHHHHhCC
Confidence 123333333222211111 145555555656667899999999998864
No 124
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=83.92 E-value=73 Score=37.32 Aligned_cols=157 Identities=11% Similarity=0.144 Sum_probs=96.0
Q ss_pred HhhhHHHHHhccCCCC--HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHHHhhc
Q 005891 30 LQQIVPPVLNSFSDQD--SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS--ADSDANVQSAAHLLDRLVKDIVT 105 (671)
Q Consensus 30 l~~Ii~pvL~~l~D~d--~rVR~~A~eaL~nI~Kv~~~~il~~f~eIf~~L~kL~--~D~d~~Vr~gA~~LdrllKdIv~ 105 (671)
.+.|-..+++.|++.- .....+|--.+|-+.....+.++.++..++.++-..+ ++.-.-.+.-+..+..+++..+.
T Consensus 230 ~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f~k 309 (799)
T 1vsy_4 230 MTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSYHG 309 (799)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 8888888888886221 1111111111111111002356778888888888776 23333344445555555543332
Q ss_pred ----c-------c----------chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhc
Q 005891 106 ----E-------S----------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNML 164 (671)
Q Consensus 106 ----e-------~----------~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL 164 (671)
| . -..-++.+.|.+...++..+..+...+.+++..|+-+-+.+--..+|.+++-+...|
T Consensus 310 R~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sL 389 (799)
T 1vsy_4 310 RVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTL 389 (799)
T ss_dssp HHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHh
Confidence 1 0 023478888999999999999999999999999999888666677888888888777
Q ss_pred CC---CChHHHHHHHHHHHHHHHHh
Q 005891 165 SD---SSHEIRQQADSALWEFLQEI 186 (671)
Q Consensus 165 ~D---~~~eVR~~a~~~L~~ll~~I 186 (671)
.. +.+-=-.+|.++|..++..+
T Consensus 390 e~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 390 ADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp TTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHH
Confidence 65 23322233445555555444
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=83.32 E-value=7.8 Score=35.37 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=60.2
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCC
Q 005891 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (671)
Q Consensus 115 fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~ 190 (671)
-+..|..++...||.+-..++..+..+.+-.|..+...+ -+|++.|.+++..++++||..+.+.+......++..+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 345566778888999999999999988888887665443 5677777777777899999999999999998887543
No 126
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=81.63 E-value=88 Score=36.63 Aligned_cols=110 Identities=12% Similarity=0.171 Sum_probs=70.8
Q ss_pred HHhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc---chhhhhHHHHHHHHHHhhcC---CchHHHHHH-HHHHHH
Q 005891 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---GDFIIFFNQIFDALCKLSAD---SDANVQSAA-HLLDRL 99 (671)
Q Consensus 27 ~~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~---~~il~~f~eIf~~L~kL~~D---~d~~Vr~gA-~~Ldrl 99 (671)
..+.+.+.|.++.++..++..++.+++.++.+++-... +-++ +.+++-+...+.. .+++--.+| ..|..+
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVl---P~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~ 410 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIY---DKILIDLYDTLADQFINSRHRIISSLKQFTRV 410 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHH---HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceeh---HHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 56788899999999999999999999999999987544 4443 4445544444444 566644455 677777
Q ss_pred HHHhhcccchhhhhhhHHHHH---HhhcCCCHHHHHHHHHHHHHh
Q 005891 100 VKDIVTESDQFSIEEFIPLLR---ERMNVLNPYVRQFLVGWITVL 141 (671)
Q Consensus 100 lKdIv~e~~~f~L~~fIP~L~---e~i~~~np~vR~~alswL~~L 141 (671)
+.-++.... + -.+++|+|. ..|...|+.-=...++.+..+
T Consensus 411 ~r~lv~~~~-y-r~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i 453 (799)
T 1vsy_4 411 IRFIVMDKL-Y-RVHITNVLSMLVSKLDMNDTNLTSNLINGIVSI 453 (799)
T ss_dssp HHHHTTSTT-G-GGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcc-c-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH
Confidence 777776421 2 234444444 444556665444555555544
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.08 E-value=6.1 Score=37.11 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=58.6
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhhcC
Q 005891 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNS 189 (671)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D-~~~eVR~~a~~~L~~ll~~I~~~ 189 (671)
..+-.|..++...||.+...++..+..+.+-.|..+...+ -+|++.|.+++.. ++++||..+.+.+..-...++..
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344567788889999999999999999888877655333 3477777777765 67899999999888888888753
No 128
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=77.63 E-value=68 Score=32.98 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=100.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH--h---hhhhHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhcc--
Q 005891 280 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEV--L---HFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAKDL-- 351 (671)
Q Consensus 280 il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i--~---~~l~~l~p~LL~~LsD~-s~eV~~~~l~lLa~Is~~~-- 351 (671)
.++.+.+.+ ++....|..+++-+..+.. .|..- + ..-+.++..+++.++++ .|.-+..++++++.+-++.
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 344444444 5555667777776665443 21111 1 11234555666766543 4666888889888876432
Q ss_pred -----chHHHHHHHHHhhccccchhhhhHHHHHHHHHhccCC-------hHHHHHHHHHhhcccCChhHHHHHHHHHHHH
Q 005891 352 -----QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD-------AERVYRELSTILEGEADLDFACTMVQALNLI 419 (671)
Q Consensus 352 -----~~F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~-------~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~i 419 (671)
.+++.++..+...+...++.++..++-.+-++...+. .+.+...+..++++++|.+-+-++...|-++
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 2456677777766666788888888888888887652 2456666777787788988888999999999
Q ss_pred hccchhHHHHHHHH
Q 005891 420 LLTSSELSELRDLL 433 (671)
Q Consensus 420 LLTs~El~~lR~~L 433 (671)
+-..+|+.++-+.+
T Consensus 262 ~~~~~~~~~lak~l 275 (304)
T 3ebb_A 262 ISDDSNAVQLAKSL 275 (304)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HhCChhHHHHHHHc
Confidence 98888877765554
No 129
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=77.32 E-value=31 Score=33.89 Aligned_cols=211 Identities=11% Similarity=0.028 Sum_probs=110.6
Q ss_pred HhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005891 140 VLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITW 219 (671)
Q Consensus 140 ~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~W 219 (671)
.|....+.+-..++..++++-+.+++=..|++|+.|-. +.+..+.....|+..++. ...+++..+.|..|+.+
T Consensus 12 ~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~----~~k~~~~~~~~~~~~~~~---~L~~~~~~E~r~~ai~~ 84 (232)
T 3jxy_A 12 HFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKD----IIQIHTLPDQKDFQIIIR---ELWDLPEREFQAAALDI 84 (232)
T ss_dssp HHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHH----HHHHHCCCCGGGHHHHHH---HHHTSSBHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHH----HHHhccccchhhHHHHHH---HHhcCcHHHHHHHHHHH
Confidence 44445555555556666665567888888999988743 333332211123333444 34456677899999998
Q ss_pred HHHHHhhcCcCcccchHhHHHHHhhhhcCCcHhHH-HHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHH
Q 005891 220 INEFVKLGGDQLVPYYADILGAILPCISDKEEKIR-VVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIE 298 (671)
Q Consensus 220 I~~~~~l~~~~l~pflp~LLp~LL~~Lsd~~~eIR-~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRia 298 (671)
+....+-...+-++++...++ . .++=++- ..|..+.+.+..-- -+.+.+.+.+-..+++.-+|-+
T Consensus 85 l~~~~k~~~~~~l~~~~~~l~----~--~~nWd~~D~~a~~~~g~~~~~~--------p~~~~~~l~~W~~s~~~w~rR~ 150 (232)
T 3jxy_A 85 MQKYKKHINETHIPFLEELIV----T--KSWWDSVDSIVPTFLGDIFLKH--------PELISAYIPKWIASDNIWLQRA 150 (232)
T ss_dssp HHHTGGGCCGGGHHHHHHHHT----S--SCCHHHHHHHTTTHHHHHHHHC--------GGGGGGTHHHHHHSSCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----c--CCChHHHHHhhHHHHHHHHHHC--------HHHHHHHHHHHhcCCchHHHHH
Confidence 864333222222222222222 1 2222222 22223323322221 1224455666666777555555
Q ss_pred HHHHHHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHhhccccchhhhhHHH
Q 005891 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-LQHFRQLVVFLVHNFRVDNSLLEKRGA 377 (671)
Q Consensus 299 aL~WL~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~~-~~~F~~fm~~LL~lf~~d~~lLe~Rg~ 377 (671)
|+.-+ +... .....+.+++.+...+.|++.-|....-|.|..++.. .+.-..|+.. + + +. .
T Consensus 151 ai~~~--l~~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~-------~-~-l~---~ 212 (232)
T 3jxy_A 151 AILFQ--LKYK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQN-------N-E-LA---P 212 (232)
T ss_dssp HHHTT--TTCG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHH-------S-C-CC---H
T ss_pred HHHHH--HHHH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH-------C-C-CC---H
Confidence 44322 1111 1123446777777888999999999999999999953 3333344432 1 1 11 4
Q ss_pred HHHHHHhccCCh
Q 005891 378 LIIRRLCVLLDA 389 (671)
Q Consensus 378 ~IIR~Lc~~L~~ 389 (671)
+..|.=++.|+.
T Consensus 213 ~~~r~A~k~l~~ 224 (232)
T 3jxy_A 213 LSKREAIKHIKQ 224 (232)
T ss_dssp HHHHHHTTTTHH
T ss_pred HHHHHHHHhccc
Confidence 566666666543
No 130
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=77.01 E-value=76 Score=33.24 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=133.2
Q ss_pred HhHhhhHHHHHhccCCCCHHHHHHHHHHHHHHHHHhcch---hhhh---HHHHHHHHHHhhcCCchHHHHHHHHHHH---
Q 005891 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD---FIIF---FNQIFDALCKLSADSDANVQSAAHLLDR--- 98 (671)
Q Consensus 28 ~yl~~Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~---il~~---f~eIf~~L~kL~~D~d~~Vr~gA~~Ldr--- 98 (671)
-|-..++..++.++..=+.+.|.-++..+.++.+.-.+. ...| -++|++.|+++..++|...--|.-+-++
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH 153 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHh
Confidence 366778899999999999999999998888876532221 1122 3799999999999998766655522111
Q ss_pred --HHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCch---h-HHhchHHHHHHHHHhcCCCChHHH
Q 005891 99 --LVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI---D-MLGFLPDFLDGLFNMLSDSSHEIR 172 (671)
Q Consensus 99 --llKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~---~-li~~Lp~fL~gLf~lL~D~~~eVR 172 (671)
+++-+. .++ . +-.+.+.+..++=+|-.-+.+-...+...... + +..+.+.|+...-+++.-+|--.|
T Consensus 154 e~la~~iL-~~~-----~-f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 154 EPLAKIIL-WSE-----Q-FYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHHHHHH-HSG-----G-GGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHh-ccH-----H-HHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 222111 111 1 12334566667767777777666655443221 1 445777888888899999999999
Q ss_pred HHHHHHHHHHHHHhhcCC----CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 005891 173 QQADSALWEFLQEIKNSP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (671)
Q Consensus 173 ~~a~~~L~~ll~~I~~~~----~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~ 227 (671)
+.+...|++++-.=.+.. .++-++-+.++...+.++..-||.+|.+-...|+.-+
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999999986432210 2334566778888999999999999999988888643
No 131
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=75.42 E-value=29 Score=37.93 Aligned_cols=226 Identities=14% Similarity=0.164 Sum_probs=108.9
Q ss_pred HHhHhh-hHHHHHhccCCCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q 005891 27 ETILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKD 102 (671)
Q Consensus 27 ~~yl~~-Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~---~~~il~~f~eIf~~L~kL~~D~d~~Vr~gA~~LdrllKd 102 (671)
..|++. .+-.++..|.-+|+|-|.+....+..|-... +..+...++.+| .+.+-..+.. +|...|-.++..
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif---~~fi~e~e~~--nGIaeLLeilgS 230 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF---YRFIYETEHH--NGIAELLEILGS 230 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHH---HHHHHTCSCC--SCHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcccCCC--CCHHHHHHHHHH
Confidence 345544 7788899999999999999998888874322 223333344443 3334333321 233222223333
Q ss_pred hhccc--------chhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHH
Q 005891 103 IVTES--------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQ 174 (671)
Q Consensus 103 Iv~e~--------~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~ 174 (671)
|+..- ..|-...++|+....... .--+.+..++..+..--+ ..-..++.||++.= |.....+.
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~---~y~~qL~ycv~qf~eKDp----~L~~~vi~~LLk~W--P~tns~Ke 301 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLS---VYHPQLAYCVVQFLEKDS----TLTEPVVMALLKYW--PKTHSPKE 301 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG---GTHHHHHHHHHHHHHHCG----GGHHHHHHHHHHTC--CSSCHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhH---HhHHHHHHHHHHHHhcCc----HhHHHHHHHHHHhC--CCCCchHH
Confidence 44310 112233344443211110 011123333333322111 12234456665433 11122232
Q ss_pred HHHHHHHHHHHhhcCCCCCh----HHHHHHHHHhcCCCCHHHHHHHHH-HHHH-HHhhcCcCcccchHhHHHHHhhhhc-
Q 005891 175 ADSALWEFLQEIKNSPSVDY----GRMAEILVQRAASPDEFTRLTAIT-WINE-FVKLGGDQLVPYYADILGAILPCIS- 247 (671)
Q Consensus 175 a~~~L~~ll~~I~~~~~~d~----~~iI~iLl~~~~s~d~~irl~al~-WI~~-~~~l~~~~l~pflp~LLp~LL~~Ls- 247 (671)
+ --|+.+-+.+...+..++ ..+...+-.|+.+++..|...|+. |-++ ++.+..+.-.-.+|-+.|.+..+..
T Consensus 302 v-lFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~ 380 (449)
T 2npp_B 302 V-MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 380 (449)
T ss_dssp H-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTC
T ss_pred H-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHH
Confidence 2 123333333322111233 345556677889999999999887 6544 2222211111123444444444333
Q ss_pred CCcHhHHHHHHHHHHHHHHh
Q 005891 248 DKEEKIRVVARETNEELRAI 267 (671)
Q Consensus 248 d~~~eIR~~A~~~n~~L~~~ 267 (671)
+=+..||..|..+...+++.
T Consensus 381 HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 381 HWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp CSSTTHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHHHH
Confidence 33688999999998877754
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=74.05 E-value=15 Score=33.81 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=58.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCC------CChHHHHHHHHHHHHHHHHhh
Q 005891 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 116 IP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D------~~~eVR~~a~~~L~~ll~~I~ 187 (671)
+-.|..++...||.+-..++..+..+.+-.|..+...+ -+|++.|.+++++ ++.+||..+.+.+..-...++
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP 119 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 34456778889999999999999999888887664433 4788888888875 478999999898888888776
Q ss_pred c
Q 005891 188 N 188 (671)
Q Consensus 188 ~ 188 (671)
.
T Consensus 120 ~ 120 (148)
T 1mhq_A 120 E 120 (148)
T ss_dssp T
T ss_pred C
Confidence 4
No 133
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=73.83 E-value=11 Score=37.08 Aligned_cols=96 Identities=9% Similarity=0.188 Sum_probs=66.1
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccch-HHHHHHHHHhhccccchhhhhHHHHHHHHHhccCChHHHHHH
Q 005891 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQH-FRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRE 395 (671)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~--~~~~-F~~fm~~LL~lf~~d~~lLe~Rg~~IIR~Lc~~L~~E~Iy~~ 395 (671)
+..+..+..+|..+.+.++..++++|+-+|. ++.- ++.++..+-.. ..- .+ ..-|..
T Consensus 95 ~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~-~~~----~e---------------~~RF~~ 154 (233)
T 2f31_A 95 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER-AEM----DE---------------VERFQP 154 (233)
T ss_dssp SSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHH-HHH----HT---------------SCTTHH
T ss_pred cHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH-HHh----CC---------------cchHHH
Confidence 3467888899998999999999999999994 3234 77887777642 110 11 112334
Q ss_pred HHHhhcccCChhHHHHHHHHHHHHhccchhHHHHHHHHHh
Q 005891 396 LSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (671)
Q Consensus 396 la~iL~~~~dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~ 435 (671)
+-+.+.+..+.++.-..++..|.++-+.+++ ++|..||+
T Consensus 155 lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl-~~R~~lR~ 193 (233)
T 2f31_A 155 LLDGLKSGTSIALKVGCLQLINALITPAEEL-DFRVHIRS 193 (233)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHHTTCCCH-HHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHCCCCCH-HHHHHHHH
Confidence 4444555678999988888888887766544 46777775
No 134
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=73.76 E-value=1.6e+02 Score=35.44 Aligned_cols=187 Identities=13% Similarity=0.044 Sum_probs=122.1
Q ss_pred hHhHHHHHhhhhcC----CcHhHHHHHHHHHHHHHHh-cCCCCC-C-CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005891 235 YADILGAILPCISD----KEEKIRVVARETNEELRAI-KADPAD-G-FDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (671)
Q Consensus 235 lp~LLp~LL~~Lsd----~~~eIR~~A~~~n~~L~~~-i~~~~~-~-~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~ 307 (671)
.++++..+...+.. +.+.+|..|.-+.+.+.+- +..... . -.+..+.+.+.+.+...+...++.+|..|+.+-
T Consensus 389 t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 389 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 45666666666554 4578999888887777643 332111 1 115677777777777767777888888888775
Q ss_pred hhChhhHhhhhhHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhccccchhhhhHHHHHH
Q 005891 308 NRHRTEVLHFLNDIFDTLLKALSD-------PSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALII 380 (671)
Q Consensus 308 ~~~p~~i~~~l~~l~p~LL~~LsD-------~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~Rg~~II 380 (671)
. +..++.+.+.+.. ....|+..|++.|.++... +=+.+-.-+++.|.+...--|-|..-..
T Consensus 469 ~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~--~p~~v~~il~~i~~n~~e~~EvRiaA~~ 536 (1056)
T 1lsh_A 469 Q----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR--DPRKVQEIVLPIFLNVAIKSELRIRSCI 536 (1056)
T ss_dssp C----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT--CHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred C----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh--chHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 4 2345566666532 2357888999999999843 3334555567777555444466643322
Q ss_pred HHHhccCChHHHHHHHHHhhcccCChhHHHHHHHHHHHHhcc-chhHHHHHHHHH
Q 005891 381 RRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLT-SSELSELRDLLK 434 (671)
Q Consensus 381 R~Lc~~L~~E~Iy~~la~iL~~~~dl~F~~~mVq~Ln~iLLT-s~El~~lR~~L~ 434 (671)
.|-..-++......++..+..|.+....+-+-..|..+.=+ .|+..+++...+
T Consensus 537 -~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la~~~~ 590 (1056)
T 1lsh_A 537 -VFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACS 590 (1056)
T ss_dssp -HHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHHHHHH
T ss_pred -HHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 23333466789999999999999988888888777776654 477777765433
No 135
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=72.01 E-value=2e+02 Score=35.66 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=86.9
Q ss_pred cCcccchHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005891 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (671)
Q Consensus 229 ~~l~pflp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~ 308 (671)
..+..|++.++...-..+...++.++..+......+.+...+ ..-++|+..|..+..+.+...--+||+-|..+..
T Consensus 392 ~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 392 LVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 356678888888888888888999998888777777666521 1126889988888876666667779999999999
Q ss_pred hChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 309 ~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
..|+.+.++.. ++..+|..+.+=.+.=+.+...+++.++
T Consensus 468 ~~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 468 LNASAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp HCHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 99999988665 4555677777777555555677777766
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=70.85 E-value=23 Score=32.71 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=59.9
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc--hHHHHHHHHHhcCC------CChHHHHHHHHHHHHHHH
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF--LPDFLDGLFNMLSD------SSHEIRQQADSALWEFLQ 184 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~--Lp~fL~gLf~lL~D------~~~eVR~~a~~~L~~ll~ 184 (671)
..-+..|..++...||.+-..++..+..+.+-.|..+... =-+|++.|.+++++ ++.+||..+.+.+..-..
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3445567788889999999999999999888888665332 24578888888876 578999999999999988
Q ss_pred Hhhc
Q 005891 185 EIKN 188 (671)
Q Consensus 185 ~I~~ 188 (671)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 8864
No 137
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=69.78 E-value=1.1e+02 Score=31.80 Aligned_cols=158 Identities=11% Similarity=0.123 Sum_probs=95.6
Q ss_pred hchHHHHHHHHHhcCCCChHHHHH-HHHHHHHHHHHhhcCCCCChHHHHHHHHHh----cCC---CCHHHHHHHHHHHHH
Q 005891 151 GFLPDFLDGLFNMLSDSSHEIRQQ-ADSALWEFLQEIKNSPSVDYGRMAEILVQR----AAS---PDEFTRLTAITWINE 222 (671)
Q Consensus 151 ~~Lp~fL~gLf~lL~D~~~eVR~~-a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~----~~s---~d~~irl~al~WI~~ 222 (671)
.++|.+++.+..=-.++.++.|.. +-+++..++..++......++.|.+.+-++ +.. .-|+.|..-..+++.
T Consensus 69 ~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~a 148 (321)
T 1w9c_A 69 NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQA 148 (321)
T ss_dssp HTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence 456666665443233355555532 344445555555432223455555554433 332 247899988889988
Q ss_pred HHhhcCcCcccc----hHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCC---CC------C-hHhHHHHHHHhc
Q 005891 223 FVKLGGDQLVPY----YADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD---GF------D-VGPILSIATRQL 288 (671)
Q Consensus 223 ~~~l~~~~l~pf----lp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~---~~------d-l~~il~~L~~~L 288 (671)
+..-+-..+... +..++..++-+..+++++|.+.+.++..++++-+....+ .+ + +.+++.+++...
T Consensus 149 i~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 149 VNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 888766555433 456677777778899999999999988888777653111 00 1 256667777777
Q ss_pred CCCcHHHHHHHHHHHHHHHh
Q 005891 289 SSEWEATRIEALHWISTLLN 308 (671)
Q Consensus 289 ~~~~~~tRiaaL~WL~~L~~ 308 (671)
...+-......|.-+..+.+
T Consensus 229 Hk~gF~~q~~iL~~lf~~ve 248 (321)
T 1w9c_A 229 HTAGLTMHASILAYMFNLVE 248 (321)
T ss_dssp CCTTHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHH
Confidence 76666555555555555554
No 138
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=67.18 E-value=25 Score=32.58 Aligned_cols=75 Identities=8% Similarity=0.094 Sum_probs=55.7
Q ss_pred hHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHH-HHHhcC---CCChHHHHHHHHHHHHHHHHhh
Q 005891 115 FIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDG-LFNMLS---DSSHEIRQQADSALWEFLQEIK 187 (671)
Q Consensus 115 fIP~L~e~i~-~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~g-Lf~lL~---D~~~eVR~~a~~~L~~ll~~I~ 187 (671)
-+-.|..++. ..||.+...++..+..+.+-.|..+...+ -+|++. |.++++ ++..+||+.+.+.+..-...++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 3444566776 48999999999999998888876654432 346776 666664 4667999999999999888887
Q ss_pred cC
Q 005891 188 NS 189 (671)
Q Consensus 188 ~~ 189 (671)
..
T Consensus 134 ~~ 135 (157)
T 1elk_A 134 SS 135 (157)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.40 E-value=28 Score=33.91 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=56.1
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhhcCC
Q 005891 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSP 190 (671)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~-D~~~eVR~~a~~~L~~ll~~I~~~~ 190 (671)
..+-.|..+|...||.+...++..+..+.+-.|..+...+ -+|++.|.+++. +++.+||..+.+.+..-...++..+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD 121 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch
Confidence 3344566788889999999999999988887776543221 236666666664 4678999999898888888887544
No 140
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=66.00 E-value=10 Score=34.76 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcccchHhHHHHHhhhhcCC---c--------HhHHHHHHHHHH
Q 005891 194 YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK---E--------EKIRVVARETNE 262 (671)
Q Consensus 194 ~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~pflp~LLp~LL~~Lsd~---~--------~eIR~~A~~~n~ 262 (671)
+..|+++|..+++++++.++..||..|..++.-++..++..+-+=+..|-.+..+. + ..||+.|.++..
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 47899999999999999999999999999988887777655555555555555432 2 368888887765
Q ss_pred HHH
Q 005891 263 ELR 265 (671)
Q Consensus 263 ~L~ 265 (671)
.+.
T Consensus 127 ll~ 129 (140)
T 1vdy_A 127 AIF 129 (140)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 141
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=60.88 E-value=47 Score=35.31 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhcCcCcccchHhHHHHHhhhhc----CCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCC
Q 005891 216 AITWINEFVKLGGDQLVPYYADILGAILPCIS----DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE 291 (671)
Q Consensus 216 al~WI~~~~~l~~~~l~pflp~LLp~LL~~Ls----d~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~ 291 (671)
-+.|+.+|+ ..|... +-.++..+...-. ..+.++...+.+|...++.....-...+.-...+..+...+.+.
T Consensus 99 ~~sWV~~F~-~~Gl~~---Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~ 174 (383)
T 3eg5_B 99 PVSWVQTFG-AEGLAS---LLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA 174 (383)
T ss_dssp CHHHHHHHH-HHHHHH---HHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTT
T ss_pred ccHHHHHHH-HccHHH---HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCC
Confidence 478999997 444221 2222222211111 22335555566666555432100000011245678888889999
Q ss_pred cHHHHHHHHHHHHHHHhhCh-h----hHhhhhhHH--------HHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q 005891 292 WEATRIEALHWISTLLNRHR-T----EVLHFLNDI--------FDTLLKALSDP-SDEVVLLVLEVHACIA 348 (671)
Q Consensus 292 ~~~tRiaaL~WL~~L~~~~p-~----~i~~~l~~l--------~p~LL~~LsD~-s~eV~~~~l~lLa~Is 348 (671)
+..+|..+++-|.++..... . .++.-++.. |-.++..|... .-+....++.++-.+.
T Consensus 175 ~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li 245 (383)
T 3eg5_B 175 VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 245 (383)
T ss_dssp SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 99999999998888776552 2 233333332 55566666552 3344444444444444
No 142
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=59.20 E-value=72 Score=31.16 Aligned_cols=17 Identities=12% Similarity=-0.037 Sum_probs=9.5
Q ss_pred HhccCCCCHHHHHHHHH
Q 005891 38 LNSFSDQDSRVRYYACE 54 (671)
Q Consensus 38 L~~l~D~d~rVR~~A~e 54 (671)
...+|=+.+.+|..|-+
T Consensus 33 ~~~lGVr~P~lR~laK~ 49 (232)
T 3jxy_A 33 FLFLGIQTPERRQLLKD 49 (232)
T ss_dssp SBCCCCCHHHHHHHHHH
T ss_pred CeeeccChHHHHHHHHH
Confidence 45556556666665544
No 143
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=58.17 E-value=40 Score=31.70 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=57.9
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhch--HHHHHHHHHhcCC------CChHHHHHHHHHHHHHHHH
Q 005891 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQE 185 (671)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~L--p~fL~gLf~lL~D------~~~eVR~~a~~~L~~ll~~ 185 (671)
..+-.|..++...||.+...++..+..+.+-.|..+...+ -+|++.|.+++++ .+.+||..+.+.+..-...
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3345567788889999999999999999888876654322 4567788878763 4689999999988888887
Q ss_pred hhc
Q 005891 186 IKN 188 (671)
Q Consensus 186 I~~ 188 (671)
++.
T Consensus 130 f~~ 132 (171)
T 1juq_A 130 LPE 132 (171)
T ss_dssp CTT
T ss_pred cCC
Confidence 763
No 144
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=58.11 E-value=46 Score=33.68 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcCcCcccch--HhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHh
Q 005891 210 EFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQ 287 (671)
Q Consensus 210 ~~irl~al~WI~~~~~l~~~~l~pfl--p~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~ 287 (671)
|-.|++++.-|+.+++....+.+.|+ .+++|..++.|....+--|.+|.-..+.++
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL---------------------- 173 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL---------------------- 173 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH----------------------
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh----------------------
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChhhHhhhhhHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhcc
Q 005891 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (671)
Q Consensus 288 L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l~~l~p~LL~~L-sD~s~eV~~~~l~lLa~Is~~~~~F~~fm~~LL~lf~ 366 (671)
.=..+|..+..-+++. .+...++..++..+ .++++.+.+...++.-++|+|..--+.+=.-|...++
T Consensus 174 -------~dd~GL~YiC~t~eRF-----~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 174 -------LDDTGLAYICQTYERF-----SHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp -------HSHHHHHHHTSSHHHH-----HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred -------ccchhHHHHHccHHHH-----HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Q ss_pred cc--chhhhhHHHH--HHHHHhccCCh
Q 005891 367 VD--NSLLEKRGAL--IIRRLCVLLDA 389 (671)
Q Consensus 367 ~d--~~lLe~Rg~~--IIR~Lc~~L~~ 389 (671)
++ ...+++=... +..||..+++.
T Consensus 242 d~tf~~~l~~D~~~k~~l~qLl~n~~~ 268 (268)
T 2fv2_A 242 DTTFAQVLKDDTTTKRWLAQLVKNLQE 268 (268)
T ss_dssp SSTTHHHHTSCHHHHHHHHHHHHHSCC
T ss_pred ChHHHHHHhcCHHHHHHHHHHHHhcCC
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=57.55 E-value=84 Score=28.82 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=56.1
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hhHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~--l~~l~p~LL~~LsD------~s~eV~~~~l~lLa~Is 348 (671)
.+.+..|...+.+.+..+.+.||.-|-.+...|+..+-.. ...++..|.+.+++ ..+.|+.+.++++..-+
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999998876321 22355566777765 46789999998887766
No 146
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=57.00 E-value=2.1e+02 Score=30.66 Aligned_cols=214 Identities=13% Similarity=0.178 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHHH--HHHHHhhhhhHHhHhh-hHHHHHhccCCCCHHHHHHHHHHHHHHHHHh---cchhhhhHHHHHH
Q 005891 3 KWYSFLFEIIVEQF--LLYADLFFYSETILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAKVV---RGDFIIFFNQIFD 76 (671)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~~~yl~~-Ii~pvL~~l~D~d~rVR~~A~eaL~nI~Kv~---~~~il~~f~eIf~ 76 (671)
.+|.+...++.... -++| ..|++. .+-.++..|.-+|+|-|.+....+..|-... +.-+...++.+|
T Consensus 103 lVYe~llrfi~s~~f~~~~~------k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif- 175 (403)
T 3fga_B 103 LVYEFFLRFLESPDFQPNIA------KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF- 175 (403)
T ss_dssp HHHHHHHHHHHCTTCCHHHH------TTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhccccChhhH------HhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-
Confidence 45666666655431 1122 344444 5677889999999999999998888874322 222333333433
Q ss_pred HHHHhhcCCchHHHHHH-H---HHHHHHHHhhcc----------------cchhhhhhhHHHHHHhhc------------
Q 005891 77 ALCKLSADSDANVQSAA-H---LLDRLVKDIVTE----------------SDQFSIEEFIPLLRERMN------------ 124 (671)
Q Consensus 77 ~L~kL~~D~d~~Vr~gA-~---~LdrllKdIv~e----------------~~~f~L~~fIP~L~e~i~------------ 124 (671)
.+.+-.++.. +|. + .+...+.....- -....+..+=|.|..++.
T Consensus 176 --~~fiye~e~~--~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~ 251 (403)
T 3fga_B 176 --YRFIYETEHH--NGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP 251 (403)
T ss_dssp --HHHHHTTCCC--TTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH
T ss_pred --HHHhcCcccC--CCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH
Confidence 3333223221 222 2 222222221100 001223333333333331
Q ss_pred ----------CCCHHHHHHHHHHHH-HhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHH--HHHHHHhhcCCC
Q 005891 125 ----------VLNPYVRQFLVGWIT-VLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL--WEFLQEIKNSPS 191 (671)
Q Consensus 125 ----------~~np~vR~~alswL~-~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L--~~ll~~I~~~~~ 191 (671)
..|+.--...++-+. .+..+++.++....+.++..+.++++.++..|-..|.... ..++..|.
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~---- 327 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS---- 327 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH----
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHH----
Confidence 233333333334444 3344566778888888888888999999988887765443 12333332
Q ss_pred CChHHHHHHHHHhc----C-CCCHHHHHHHHHHHHHHHhhcCcCc
Q 005891 192 VDYGRMAEILVQRA----A-SPDEFTRLTAITWINEFVKLGGDQL 231 (671)
Q Consensus 192 ~d~~~iI~iLl~~~----~-s~d~~irl~al~WI~~~~~l~~~~l 231 (671)
-+.+.++|++...+ . +=+..+|-.+..-+..|.++.+.-+
T Consensus 328 ~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF 372 (403)
T 3fga_B 328 DNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLF 372 (403)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHH
Confidence 24456666665443 2 2267899888888988888877654
No 147
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=55.58 E-value=42 Score=30.41 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=53.0
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is 348 (671)
-.+.+..+...+.+.+..+.+.||.-|-.+...|+..+...+ .+++..+.+.++...+.|+.+.+.++..-+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 357788899999999998999999999999999988664211 223333344444567899999998876655
No 148
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=54.34 E-value=95 Score=30.00 Aligned_cols=178 Identities=9% Similarity=-0.054 Sum_probs=98.9
Q ss_pred CCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005891 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEF 223 (671)
Q Consensus 144 ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~ 223 (671)
..+.+-..++..++++-+.+++=..|++|+.|-+.. +..+. .+-..-...+....+++..+.|..|+.++...
T Consensus 10 ~~d~~~a~~~~~y~k~~~~flGV~~P~lR~laK~~~----k~~~~---~~~~~~~~~~~~L~~s~~~E~r~la~~~l~~~ 82 (220)
T 2b6c_A 10 QKNPETAAKMSAYMKHQFVFAGIPAPERQALSKQLL----KESHT---WPKEKLCQEIEAYYQKTEREYQYVAIDLALQN 82 (220)
T ss_dssp CCCHHHHHHHHHHTTTSSCCCCCCHHHHHHHTHHHH----HHHTT---SCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCCeeeCCChHHHHHHHHHHH----HHhcc---CcccchHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 333344444444444445677777888888774422 22100 11111124445555667788999998888643
Q ss_pred HhhcCcCcccchHhHHHHHhhhhcC-CcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHH
Q 005891 224 VKLGGDQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHW 302 (671)
Q Consensus 224 ~~l~~~~l~pflp~LLp~LL~~Lsd-~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~W 302 (671)
-... .+..++.+-..+.+ +.=++-+..+.+...+...- -..+.+.+.+-..|++.-+|-+|+.-
T Consensus 83 ~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~--------~~~~~~~i~~W~~s~~~w~rR~ai~~ 147 (220)
T 2b6c_A 83 VQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH--------LTELPTIFALFYGAENFWNRRVALNL 147 (220)
T ss_dssp GGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS--------GGGHHHHHHHHTTCSSHHHHHHHHHT
T ss_pred HhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC--------hHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2211 23444444444432 22122222223333333221 13466777888888886665555542
Q ss_pred HHHHHhhChhhHhhhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005891 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (671)
Q Consensus 303 L~~L~~~~p~~i~~~l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~ 349 (671)
+. .- .. ..+.+.+++.+-..+.|++.-|+...-|.|..++.
T Consensus 148 ~l--~~--~~--~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 148 QL--ML--KE--KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp TT--TC--GG--GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HH--HH--HH--CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 21 11 11 24556778877778999999999999999999995
No 149
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=53.52 E-value=1.3e+02 Score=27.35 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=56.6
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD------~s~eV~~~~l~lLa~Is 348 (671)
.+.+..+...+.+.+..+.+.||.-|-.+...|+..+-..+ ..++..|.+.+++ ..++|+.+.++++..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999998774322 3466667777765 36799999998876666
No 150
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=53.38 E-value=1.5e+02 Score=28.55 Aligned_cols=91 Identities=8% Similarity=0.023 Sum_probs=59.3
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCC
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~ 192 (671)
..+.+.+.+-..+.|..+|.+++... + +-.+ -.+.+.+++-+-..+.|+..=||+++.-.|....+ .
T Consensus 123 ~~~~~~i~~W~~s~~~w~rR~ai~~~--l---~~~~-~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k-------~ 189 (220)
T 2b6c_A 123 TELPTIFALFYGAENFWNRRVALNLQ--L---MLKE-KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK-------T 189 (220)
T ss_dssp GGHHHHHHHHTTCSSHHHHHHHHHTT--T---TCGG-GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT-------T
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH--H---HHHH-CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-------h
Confidence 44677888999999999999987744 2 1111 13445555555568899999999997665555543 4
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHH
Q 005891 193 DYGRMAEILVQRAASPDEFTRLTAIT 218 (671)
Q Consensus 193 d~~~iI~iLl~~~~s~d~~irl~al~ 218 (671)
|-+.+++++ +-..-+..+...|++
T Consensus 190 ~~~~v~~fl--~~~~l~~~~~r~Aik 213 (220)
T 2b6c_A 190 NPQWVEELM--KELVLSPLAQREGSK 213 (220)
T ss_dssp CHHHHHHHH--HHSCCCHHHHHHHTT
T ss_pred CHHHHHHHH--hhccCCHHHHHHHHH
Confidence 667777777 333334555555544
No 151
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=51.34 E-value=26 Score=32.12 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHH
Q 005891 318 LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQ 356 (671)
Q Consensus 318 l~~l~p~LL~~LsD~s~eV~~~~l~lLa~Is~-~~~~F~~ 356 (671)
...+.+.|++.|.|+++.|+.++|++|.-++. +.+.|..
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~ 86 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRR 86 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHH
Confidence 46789999999999999999999999999984 4445544
No 152
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.04 E-value=67 Score=29.87 Aligned_cols=72 Identities=7% Similarity=0.047 Sum_probs=51.8
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 005891 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSD-PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD-~s~eV~~~~l~lLa~Is 348 (671)
-.+.+..|.+.+.+.+..+.+.||.-|-.+...|+..+...+ .+++..+.+.++. ..+.|+.+.++++..-+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999988664211 1133333333333 56799999998776555
No 153
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=48.06 E-value=1.5e+02 Score=27.71 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=54.9
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005891 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (671)
Q Consensus 278 ~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~LL~~LsD------~s~eV~~~~l~lLa~Is 348 (671)
.+.+..|.+.+.+.+..+.+.||.-|-.+...|+..+-..+ .+++..|.+.++. ..++|+.+.++++..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999988765221 2345556666652 35789999998877766
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.62 E-value=62 Score=31.68 Aligned_cols=77 Identities=10% Similarity=0.123 Sum_probs=55.8
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHhc--hHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhhc
Q 005891 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF--LPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~~--Lp~fL~gLf~lL~D-~~~eVR~~a~~~L~~ll~~I~~ 188 (671)
-..-+..|..++...||.+-..++..+..+.+-.|..+... =-+|++.|.++++. ++.+||..+.+.+..-...++.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 34556667888889999999999999998877766543221 23455555555533 6789999999988888888865
No 155
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=42.48 E-value=3.2e+02 Score=28.54 Aligned_cols=110 Identities=20% Similarity=0.166 Sum_probs=65.5
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhh
Q 005891 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (671)
Q Consensus 36 pvL~~l~D~d~rVR~~A~eaL~nI~Kv~~~--~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L 112 (671)
.++....+.+.....|+..|+-++.....| ++.. -++.+.-+..+++..+.+|-..| ++|-.++.-. +.+...+
T Consensus 164 ~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s--e~~~~lv 240 (339)
T 3dad_A 164 CLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS--ENNAPLF 240 (339)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC--GGGHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC--cccchHH
Confidence 444455666899999999999888654443 2222 36778888888888888887777 6655443311 1110000
Q ss_pred h------------hhHHHHHHhhc---CCCHHHHHHHHHHHHHh-hcCCchh
Q 005891 113 E------------EFIPLLRERMN---VLNPYVRQFLVGWITVL-DSVPDID 148 (671)
Q Consensus 113 ~------------~fIP~L~e~i~---~~np~vR~~alswL~~L-~~ip~~~ 148 (671)
. .....|.+.+. ..+..+..+++..|+.+ ...|+.+
T Consensus 241 ~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d 292 (339)
T 3dad_A 241 IRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQD 292 (339)
T ss_dssp HHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChh
Confidence 0 11334444454 57788888887777743 3344433
No 156
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=40.50 E-value=1.4e+02 Score=26.26 Aligned_cols=89 Identities=13% Similarity=0.133 Sum_probs=61.1
Q ss_pred hHhHHHHHhhhhcCCcHhHHHHHHHHHHHHHHhcCCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---
Q 005891 235 YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR--- 311 (671)
Q Consensus 235 lp~LLp~LL~~Lsd~~~eIR~~A~~~n~~L~~~i~~~~~~~dl~~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~p--- 311 (671)
+..-+...|..+..+.+.|..++.=+... . -..+.|+..+.+++.......|+..|--+-.+...+.
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h----~------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~ 75 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIEN----K------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKN 75 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHT----G------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHh----H------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccC
Confidence 44555666777777777777766544432 1 1246889999999988788899999988888887763
Q ss_pred -hhHhhhhhHHHHHHHHhcCCCC
Q 005891 312 -TEVLHFLNDIFDTLLKALSDPS 333 (671)
Q Consensus 312 -~~i~~~l~~l~p~LL~~LsD~s 333 (671)
..+.+.+...+|.++....|+.
T Consensus 76 ~~~f~~~f~~~l~~~~~~~~~~~ 98 (132)
T 4flb_A 76 AIIFRESFADVLPEAAALVKDPS 98 (132)
T ss_dssp CTHHHHHHHTTHHHHHHTTCSTT
T ss_pred hHHHHHHHHHHHHHHHHHhCCHH
Confidence 3455556667777777776654
No 157
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=40.24 E-value=37 Score=39.13 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 005891 72 NQIFDALCKLSADSD-ANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (671)
Q Consensus 72 ~eIf~~L~kL~~D~d-~~Vr~gA~~LdrllKdIv~e~~~f~L~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li 150 (671)
++.++.+.+.+.=.+ .+|+.+-++|..= + .-+...-+.+|...+ .+|.||.+||+||... ++.++.
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W-----~---~~~~~dALeLL~~~f--~~~~VR~yAV~~L~~~---~de~L~ 142 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANW-----A---PMDVEDALELLSPTF--THPQVRKYAVSRLAQA---PDEDLL 142 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHS-----C---CCCHHHHHHHHSTTC--CCHHHHHHHHHHHHHS---CHHHHH
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcC-----C---CCCHHHHHHHhcccC--CCHHHHHHHHHHHHhC---ChHHHH
Confidence 455666665553222 3444433433321 1 112333344444333 7899999999999874 888999
Q ss_pred hchHHHHHHHH
Q 005891 151 GFLPDFLDGLF 161 (671)
Q Consensus 151 ~~Lp~fL~gLf 161 (671)
.|||.+++.|-
T Consensus 143 ~YLlQLVQALK 153 (696)
T 2x6h_A 143 LYLLQLVQALK 153 (696)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 158
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=35.36 E-value=1.1e+02 Score=27.71 Aligned_cols=104 Identities=11% Similarity=0.020 Sum_probs=59.2
Q ss_pred HHhhcCCchhHHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Q 005891 139 TVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT 218 (671)
Q Consensus 139 ~~L~~ip~~~li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~ 218 (671)
..+..+....+.+++|.++. +|.|.|=-|...+...|..+-+ .++|.+.+-+++.|..=+.
T Consensus 19 ~~L~~~~~~~i~p~lp~LL~----WLQD~NWPvA~~i~~~L~~~~~-----------~l~p~I~~vl~s~D~~W~y---- 79 (134)
T 3ut4_A 19 DQLCKLIDNEIEPIIFDLLK----WLQDYNWPIAKDILPVVVLHQS-----------IAMPHILTILQGNDIMWKY---- 79 (134)
T ss_dssp HHHTTCCHHHHHHHHHHHHG----GGSCTTSTTHHHHHHHHHHTHH-----------HHHHHHHHHHHSSCHHHHH----
T ss_pred HHHHhCCHHHHHHHHHHHHH----HHhcCCCccHHHHHHHHHHccH-----------hhHHHHHHHHHcCChHHHH----
Confidence 34555666667777776666 9999997777666565555443 3455555555666654333
Q ss_pred HHHHHH-hhcCcCcccchHhHHHHHhhhhcCC-----cHhHHHHHHHHHHHH
Q 005891 219 WINEFV-KLGGDQLVPYYADILGAILPCISDK-----EEKIRVVARETNEEL 264 (671)
Q Consensus 219 WI~~~~-~l~~~~l~pflp~LLp~LL~~Lsd~-----~~eIR~~A~~~n~~L 264 (671)
|+-.++ .-.+.. -...+.|.+......+ ..++.+.|.+.....
T Consensus 80 wil~~lv~~~~~~---~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 80 WVIKLMIPYLIYP---NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHGGGCCHH---HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHH---HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 333222 112222 2455666666655543 356777777665543
No 159
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.42 E-value=1.6e+02 Score=26.92 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=53.0
Q ss_pred hHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhhhh--hHHHHH-HHHhcC---CCCHHHHHHHHHHHHHHh
Q 005891 277 VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDT-LLKALS---DPSDEVVLLVLEVHACIA 348 (671)
Q Consensus 277 l~~il~~L~~~L~-~~~~~tRiaaL~WL~~L~~~~p~~i~~~l--~~l~p~-LL~~Ls---D~s~eV~~~~l~lLa~Is 348 (671)
-.+.+..|.+.+. +.+..+.+.||.-|-.+...|+..+-..+ .+++.. |++.++ ++...|+.+.++++..-+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3578888999997 47888999999999999999988775322 123443 455553 455689999998876665
No 160
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=30.59 E-value=1.4e+02 Score=27.31 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=52.9
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCchhHHhchH--HHHHH-HHHhcCCC---ChHHHHHHHHHHHHHHHHhhc
Q 005891 116 IPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDG-LFNMLSDS---SHEIRQQADSALWEFLQEIKN 188 (671)
Q Consensus 116 IP~L~e~i~~-~np~vR~~alswL~~L~~ip~~~li~~Lp--~fL~g-Lf~lL~D~---~~eVR~~a~~~L~~ll~~I~~ 188 (671)
+..|..|+.. .|+.+-..++..+..+.+-.|..+...+- +|+.. |.+++++. ..+||..+.+.+..-...++.
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4445556653 57777777888888888777776655443 56765 66777653 457999999999888888875
Q ss_pred CC
Q 005891 189 SP 190 (671)
Q Consensus 189 ~~ 190 (671)
.|
T Consensus 135 ~p 136 (152)
T 3rru_A 135 GV 136 (152)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 161
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=29.78 E-value=5e+02 Score=27.23 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=25.6
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 005891 279 PILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (671)
Q Consensus 279 ~il~~L~~~L~~~~~~tRiaaL~WL~~L~~~~ 310 (671)
..+..+...+.+.+..+|..++.-|.++....
T Consensus 100 ~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 100 EGILLLVRAMDPAVPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHcCC
Confidence 45677888888888889999998888777654
No 162
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=28.67 E-value=2.2e+02 Score=24.94 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=51.6
Q ss_pred chHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc
Q 005891 152 FLPDFLDGLFNMLSD--SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (671)
Q Consensus 152 ~Lp~fL~gLf~lL~D--~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~ 229 (671)
-.=.||..|.++.+| .++||-..+...+..++. ..++.+++-..|-+.++++ ...
T Consensus 21 Kck~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~-----~~i~~EeFt~~Lq~~lns~------------------pqP 77 (114)
T 2p6v_A 21 XCXNFLSTLIXLASSGXQSTETAANVXELVQNLLD-----GXIEAEDFTSRLYRELNSS------------------PQP 77 (114)
T ss_dssp HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHT-----TSSCHHHHHHHHHHHTTCC------------------CCT
T ss_pred HHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHcCC------------------CCc
Confidence 445677888888888 677777766555555543 1244444444444443331 234
Q ss_pred CcccchHhHHHHHhhhhcCCcHhHHH
Q 005891 230 QLVPYYADILGAILPCISDKEEKIRV 255 (671)
Q Consensus 230 ~l~pflp~LLp~LL~~Lsd~~~eIR~ 255 (671)
.++||+.+-+|++-..+.+...-|+.
T Consensus 78 ~LvPFLK~sLP~LR~~l~~~~~~i~Q 103 (114)
T 2p6v_A 78 YLVPFLXRSLPALRQLTPDSAAFIQQ 103 (114)
T ss_dssp THHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred chHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 67899999999999988876655544
No 163
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.42 E-value=4.1e+02 Score=25.36 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=55.8
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCcCcc------cchHhHHHHHhhhhcCCcHhHH
Q 005891 181 EFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV------PYYADILGAILPCISDKEEKIR 254 (671)
Q Consensus 181 ~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~~l~------pflp~LLp~LL~~Lsd~~~eIR 254 (671)
++++.|...+ ..-...+..|...++++++-+++.|+.-+..+++-.|..+. .|+..+...+-+ ..+++||
T Consensus 28 eicd~i~~~~-~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk 103 (220)
T 1dvp_A 28 LICDEINQKD-VTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVR 103 (220)
T ss_dssp HHHHHHHTTS-SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHH
T ss_pred HHHHhhcCCC-cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHH
Confidence 4444444322 23455666777788899999999999999988887765432 245555443322 4567888
Q ss_pred HHHHHHHHHHHHhcCC
Q 005891 255 VVARETNEELRAIKAD 270 (671)
Q Consensus 255 ~~A~~~n~~L~~~i~~ 270 (671)
+-+.+..+.....+..
T Consensus 104 ~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 104 QKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8777777666666654
No 164
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.54 E-value=61 Score=20.44 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHh
Q 005891 424 SELSELRDLLKK 435 (671)
Q Consensus 424 ~El~~lR~~L~~ 435 (671)
+.+..||++||.
T Consensus 15 erlrklrkklrs 26 (27)
T 3twe_A 15 ERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 456667777764
No 165
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=26.07 E-value=5.7e+02 Score=26.56 Aligned_cols=148 Identities=14% Similarity=0.077 Sum_probs=82.7
Q ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHhcchh--hhhH-HHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcccchhhh
Q 005891 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDF--IIFF-NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (671)
Q Consensus 37 vL~~l~D~d~rVR~~A~eaL~nI~Kv~~~~i--l~~f-~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e~~~f~L 112 (671)
++..+...+.+.+.-|.-+|..+.. .+.- ..++ .+=+..|.+...+.+.+..+=+ .+|..++.-.-+-.+-.+-
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q--~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQ--EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHH--TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhh--cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 3344445555555555444444321 1111 1111 2335667777777888887666 4444444310000011123
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCchhHHh---chHH--------HHHHHHHhcC---CCChHHHHHHHHH
Q 005891 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG---FLPD--------FLDGLFNMLS---DSSHEIRQQADSA 178 (671)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~alswL~~L~~ip~~~li~---~Lp~--------fL~gLf~lL~---D~~~eVR~~a~~~ 178 (671)
+.||-.+-..+.+.+..|-+.+++.+.++....+..... -... .++.|.+.|. ..+.++...|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 567777777777788888888888888886655322111 1110 1445556775 5788898888888
Q ss_pred HHHHHHHh
Q 005891 179 LWEFLQEI 186 (671)
Q Consensus 179 L~~ll~~I 186 (671)
++.++...
T Consensus 281 IN~lL~~a 288 (339)
T 3dad_A 281 INKTLAAL 288 (339)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 88888755
No 166
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=23.36 E-value=71 Score=36.24 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhHHhchHHHHHHHH
Q 005891 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (671)
Q Consensus 126 ~np~vR~~alswL~~L~~ip~~~li~~Lp~fL~gLf 161 (671)
.++.||.+||+|| ...++.++..||+.+.+.|.
T Consensus 107 ~d~~VR~yAV~~L---~~~~D~eL~lYLlQLVQALK 139 (614)
T 3ls8_A 107 TNPTVRRYAVARL---RQADDEDLLMYLLQLVQALK 139 (614)
T ss_dssp CCHHHHHHHHHHH---TTSCHHHHHHTHHHHHHHGG
T ss_pred CCHHHHHHHHHHH---HhCChHHHHHHHHHHHHhhh
Confidence 7899999999998 45788899999999999874
No 167
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=22.81 E-value=1.3e+02 Score=27.24 Aligned_cols=93 Identities=8% Similarity=0.035 Sum_probs=54.7
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCc-------Ccccch
Q 005891 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD-------QLVPYY 235 (671)
Q Consensus 163 lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~~-------~l~pfl 235 (671)
-|.|..+.+-+...+.|..++.+-. .....|+..+..++....+.-|+.++.-++.+++-.+. .+.+.+
T Consensus 13 ~L~~~k~~~S~~~I~~LT~~a~~~~----~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F 88 (145)
T 3d9j_A 13 SLNDYKPPISKAKMTQITKAAIKAI----KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRF 88 (145)
T ss_dssp GGGGSCSSCCHHHHHHHHHHHHHTG----GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHH
Confidence 4444432244444455556655432 24678888888888777788899999999888886543 344444
Q ss_pred HhHHHHHhhhhcCCcHhHHHHHHH
Q 005891 236 ADILGAILPCISDKEEKIRVVARE 259 (671)
Q Consensus 236 p~LLp~LL~~Lsd~~~eIR~~A~~ 259 (671)
...|+.++..+-..+++.|.-..+
T Consensus 89 ~~~L~~~f~~~~~~~~~~r~kl~r 112 (145)
T 3d9j_A 89 SNNIISTFQNLYRCPGDDKSKIVR 112 (145)
T ss_dssp HHHHHHHHHHHTSSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 333444443333334666654443
No 168
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.88 E-value=4.6e+02 Score=23.53 Aligned_cols=101 Identities=15% Similarity=0.041 Sum_probs=62.2
Q ss_pred HHhchHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Q 005891 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (671)
Q Consensus 149 li~~Lp~fL~gLf~lL~D~~~eVR~~a~~~L~~ll~~I~~~~~~d~~~iI~iLl~~~~s~d~~irl~al~WI~~~~~l~~ 228 (671)
.-....+|...|-.+-.++.+.|.. |..++.+-. .+.+.|+..+..++....+.-|+.++.-++.+++-.|
T Consensus 5 ~~~~~~~f~~~L~~L~~nSk~~I~~-----LT~~a~~~~----~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g 75 (144)
T 1sz9_A 5 TEVIVKDFNSILEELTFNSRPIITT-----LTKLAEENI----SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVG 75 (144)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHH-----HHHHHHHTG----GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccHhHHHH-----HHHHHHHHH----HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhcc
Confidence 3445566666665542233334443 344444321 2467899999999988889999999999999999888
Q ss_pred cCcccchHhHHHHHhh-hhcCCcHhHHHHHH
Q 005891 229 DQLVPYYADILGAILP-CISDKEEKIRVVAR 258 (671)
Q Consensus 229 ~~l~pflp~LLp~LL~-~Lsd~~~eIR~~A~ 258 (671)
..+.+++...++-++. .....++++|.--.
T Consensus 76 ~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~ 106 (144)
T 1sz9_A 76 SPYTIYFSRNLFNLYKRTYLLVDNTTRTKLI 106 (144)
T ss_dssp TTHHHHHHTTHHHHHHHHHHTSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7665544444444443 32333555554433
No 169
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=20.03 E-value=6.9e+02 Score=25.27 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=66.6
Q ss_pred hhhHHHHHhccCCC-CHHHHHHHHHHHHHHHHHhcc--hhhhhHHHHHHHHHHhhcCCchHHHHHH-HHHHHHHHHhhcc
Q 005891 31 QQIVPPVLNSFSDQ-DSRVRYYACEALYNIAKVVRG--DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (671)
Q Consensus 31 ~~Ii~pvL~~l~D~-d~rVR~~A~eaL~nI~Kv~~~--~il~~f~eIf~~L~kL~~D~d~~Vr~gA-~~LdrllKdIv~e 106 (671)
..++..++..+.++ .+.-|-.++..+.|+.+...+ .++..++++++.+.....++..++|-++ .++-.+.--...+
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~ 225 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD 225 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence 34555666666543 455677777787777543222 3456788999999888888889999877 4544443323322
Q ss_pred cchhhhhhhHHHHHHhhc-CCCHHHHHHHHHHHHHhhcC
Q 005891 107 SDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSV 144 (671)
Q Consensus 107 ~~~f~L~~fIP~L~e~i~-~~np~vR~~alswL~~L~~i 144 (671)
.+.-....++..+.+.+. ..++++-+-++-.+..+...
T Consensus 226 ~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 226 HNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 211112223333333333 25666666666666666544
Done!