Query 005892
Match_columns 671
No_of_seqs 577 out of 1961
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 15:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2203 GTP-binding protein [G 100.0 1E-139 3E-144 1118.0 48.9 652 8-671 5-662 (772)
2 PF05879 RHD3: Root hair defec 100.0 4E-124 8E-129 1087.5 52.5 620 46-667 1-639 (742)
3 COG1126 GlnQ ABC-type polar am 100.0 5.3E-33 1.2E-37 273.3 11.4 180 8-205 1-227 (240)
4 COG1120 FepC ABC-type cobalami 100.0 7.2E-33 1.6E-37 283.7 10.7 197 8-220 1-245 (258)
5 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.6E-31 1E-35 269.2 11.1 189 7-213 2-237 (254)
6 COG1127 Ttg2A ABC-type transpo 100.0 4.4E-30 9.4E-35 256.3 11.3 190 7-212 6-246 (263)
7 COG1125 OpuBA ABC-type proline 100.0 2.7E-30 6E-35 258.9 8.1 181 9-205 1-227 (309)
8 COG1124 DppF ABC-type dipeptid 100.0 1.1E-29 2.4E-34 254.4 10.5 185 7-204 1-232 (252)
9 COG3638 ABC-type phosphate/pho 100.0 1.3E-29 2.8E-34 252.3 9.6 190 8-213 2-246 (258)
10 COG1135 AbcC ABC-type metal io 100.0 1.1E-29 2.4E-34 261.3 9.5 184 9-205 1-233 (339)
11 COG3842 PotA ABC-type spermidi 100.0 4.1E-29 8.8E-34 266.4 11.9 182 7-205 3-228 (352)
12 COG1116 TauB ABC-type nitrate/ 100.0 3.9E-29 8.4E-34 252.3 10.0 166 8-188 2-206 (248)
13 COG4555 NatA ABC-type Na+ tran 100.0 7.1E-29 1.5E-33 241.2 6.9 179 9-203 1-222 (245)
14 COG3839 MalK ABC-type sugar tr 99.9 1.3E-28 2.8E-33 261.3 8.3 182 7-204 1-224 (338)
15 COG4604 CeuD ABC-type enteroch 99.9 6.1E-29 1.3E-33 240.8 5.1 192 9-217 1-239 (252)
16 COG1118 CysA ABC-type sulfate/ 99.9 1.4E-28 3.1E-33 252.6 7.3 182 8-205 1-229 (345)
17 COG0411 LivG ABC-type branched 99.9 8.2E-29 1.8E-33 248.3 5.0 188 8-211 3-247 (250)
18 COG1136 SalX ABC-type antimicr 99.9 5.4E-28 1.2E-32 243.4 10.5 170 9-192 1-220 (226)
19 COG1131 CcmA ABC-type multidru 99.9 5.6E-28 1.2E-32 255.4 10.5 181 7-202 2-225 (293)
20 COG1122 CbiO ABC-type cobalt t 99.9 5.8E-28 1.3E-32 246.6 7.9 182 8-204 2-229 (235)
21 PRK13536 nodulation factor exp 99.9 1.7E-27 3.7E-32 256.6 10.5 181 6-203 38-261 (340)
22 PRK13537 nodulation ABC transp 99.9 1.6E-27 3.5E-32 253.5 10.2 181 6-203 4-227 (306)
23 COG1117 PstB ABC-type phosphat 99.9 2.3E-27 5E-32 232.7 10.4 181 7-206 5-240 (253)
24 PRK11650 ugpC glycerol-3-phosp 99.9 1.6E-27 3.4E-32 258.3 9.7 182 8-205 2-226 (356)
25 COG3840 ThiQ ABC-type thiamine 99.9 2.4E-27 5.3E-32 227.1 9.3 172 9-204 1-220 (231)
26 COG4559 ABC-type hemin transpo 99.9 3.2E-27 6.9E-32 231.3 9.9 190 9-217 1-244 (259)
27 TIGR03265 PhnT2 putative 2-ami 99.9 2.7E-27 5.9E-32 256.2 9.6 183 7-205 2-226 (353)
28 PRK11432 fbpC ferric transport 99.9 3.2E-27 7E-32 255.3 10.0 182 7-204 4-227 (351)
29 TIGR02314 ABC_MetN D-methionin 99.9 3.9E-27 8.4E-32 253.7 10.3 183 9-204 1-231 (343)
30 PRK09536 btuD corrinoid ABC tr 99.9 4E-27 8.7E-32 258.2 10.4 190 8-214 2-239 (402)
31 PRK09452 potA putrescine/sperm 99.9 4.6E-27 1E-31 256.0 9.7 184 5-204 10-235 (375)
32 COG0410 LivF ABC-type branched 99.9 6.3E-27 1.4E-31 233.0 8.5 187 8-210 2-233 (237)
33 COG2884 FtsE Predicted ATPase 99.9 8E-27 1.7E-31 225.1 8.3 173 9-197 1-220 (223)
34 PRK10851 sulfate/thiosulfate t 99.9 1.4E-26 3E-31 250.7 9.8 181 8-204 1-227 (353)
35 PRK11000 maltose/maltodextrin 99.9 1.3E-26 2.8E-31 252.5 9.6 181 8-204 2-224 (369)
36 COG4175 ProV ABC-type proline/ 99.9 1.3E-26 2.8E-31 238.5 8.9 186 7-205 2-256 (386)
37 cd03296 ABC_CysA_sulfate_impor 99.9 2.3E-26 5E-31 235.8 10.5 179 9-203 2-226 (239)
38 COG4598 HisP ABC-type histidin 99.9 9.2E-27 2E-31 222.5 6.7 182 7-205 4-243 (256)
39 COG1137 YhbG ABC-type (unclass 99.9 2.1E-27 4.5E-32 230.8 2.2 189 7-212 2-237 (243)
40 PRK11022 dppD dipeptide transp 99.9 2.5E-26 5.5E-31 246.3 10.5 188 8-204 2-244 (326)
41 TIGR03258 PhnT 2-aminoethylpho 99.9 1.9E-26 4.1E-31 250.2 9.5 183 7-205 3-230 (362)
42 PRK11607 potG putrescine trans 99.9 2.3E-26 5E-31 250.8 10.0 182 7-204 17-240 (377)
43 TIGR01288 nodI ATP-binding ABC 99.9 2.6E-26 5.6E-31 243.9 9.9 179 8-203 3-224 (303)
44 cd03261 ABC_Org_Solvent_Resist 99.9 2.6E-26 5.6E-31 234.8 9.4 177 10-202 1-225 (235)
45 PRK13637 cbiO cobalt transport 99.9 3.6E-26 7.9E-31 241.0 10.6 183 9-204 2-235 (287)
46 cd03218 ABC_YhbG The ABC trans 99.9 3.7E-26 8E-31 232.9 9.7 178 10-204 1-223 (232)
47 PRK09544 znuC high-affinity zi 99.9 4.4E-26 9.6E-31 235.9 10.3 189 8-213 3-219 (251)
48 PRK14250 phosphate ABC transpo 99.9 5.5E-26 1.2E-30 233.5 10.8 181 7-203 1-221 (241)
49 PRK11308 dppF dipeptide transp 99.9 4.9E-26 1.1E-30 244.2 10.7 184 8-204 4-245 (327)
50 cd03265 ABC_DrrA DrrA is the A 99.9 5.4E-26 1.2E-30 230.1 10.5 175 10-200 1-218 (220)
51 COG0444 DppD ABC-type dipeptid 99.9 3.5E-26 7.5E-31 238.2 9.1 187 9-204 1-244 (316)
52 PRK11300 livG leucine/isoleuci 99.9 4.3E-26 9.4E-31 235.8 9.6 181 8-204 4-244 (255)
53 PRK11614 livF leucine/isoleuci 99.9 6E-26 1.3E-30 232.4 10.5 181 7-204 3-227 (237)
54 TIGR02315 ABC_phnC phosphonate 99.9 4.3E-26 9.3E-31 234.0 9.4 178 9-201 1-233 (243)
55 PRK13651 cobalt transporter AT 99.9 7.1E-26 1.5E-30 240.8 11.2 183 9-205 2-256 (305)
56 PRK11231 fecE iron-dicitrate t 99.9 5.1E-26 1.1E-30 235.6 9.7 186 9-211 2-235 (255)
57 PRK13650 cbiO cobalt transport 99.9 6.1E-26 1.3E-30 238.4 10.5 183 8-204 3-230 (279)
58 cd03259 ABC_Carb_Solutes_like 99.9 5.1E-26 1.1E-30 229.1 9.4 171 10-196 1-213 (213)
59 COG4608 AppF ABC-type oligopep 99.9 5.1E-26 1.1E-30 232.4 9.3 193 7-219 2-214 (268)
60 PRK13634 cbiO cobalt transport 99.9 8E-26 1.7E-30 238.7 11.1 183 9-204 2-236 (290)
61 PRK15079 oligopeptide ABC tran 99.9 6.7E-26 1.5E-30 243.4 10.6 185 7-204 6-252 (331)
62 PRK13647 cbiO cobalt transport 99.9 6.7E-26 1.5E-30 237.4 10.3 178 7-200 2-224 (274)
63 PRK09473 oppD oligopeptide tra 99.9 6.9E-26 1.5E-30 243.3 10.6 188 4-204 7-252 (330)
64 PRK10895 lipopolysaccharide AB 99.9 6.8E-26 1.5E-30 232.6 10.0 185 8-209 2-232 (241)
65 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 7.8E-26 1.7E-30 231.5 10.1 178 9-203 1-221 (236)
66 PRK11153 metN DL-methionine tr 99.9 6.2E-26 1.3E-30 245.0 9.8 183 9-204 1-231 (343)
67 PRK15093 antimicrobial peptide 99.9 7.4E-26 1.6E-30 243.2 10.1 189 7-204 1-249 (330)
68 PRK11247 ssuB aliphatic sulfon 99.9 9.7E-26 2.1E-30 234.2 10.6 177 7-199 10-219 (257)
69 PRK13643 cbiO cobalt transport 99.9 1E-25 2.2E-30 237.7 10.9 182 9-204 1-234 (288)
70 PRK11831 putative ABC transpor 99.9 8.4E-26 1.8E-30 236.0 10.0 182 6-203 4-233 (269)
71 cd03216 ABC_Carb_Monos_I This 99.9 1E-25 2.2E-30 218.2 9.9 157 10-194 1-162 (163)
72 PRK13652 cbiO cobalt transport 99.9 9.8E-26 2.1E-30 236.5 10.5 182 7-203 1-227 (277)
73 PRK13638 cbiO cobalt transport 99.9 8.6E-26 1.9E-30 236.1 10.0 179 9-204 1-226 (271)
74 cd03256 ABC_PhnC_transporter A 99.9 7.1E-26 1.5E-30 232.0 9.1 177 10-201 1-232 (241)
75 cd03258 ABC_MetN_methionine_tr 99.9 8E-26 1.7E-30 230.8 9.3 181 9-202 1-229 (233)
76 COG1123 ATPase components of v 99.9 6.7E-26 1.5E-30 251.4 9.3 185 7-204 278-520 (539)
77 TIGR03411 urea_trans_UrtD urea 99.9 1.1E-25 2.3E-30 231.1 9.9 177 9-203 2-231 (242)
78 PRK13646 cbiO cobalt transport 99.9 8.7E-26 1.9E-30 238.0 9.4 184 8-204 1-236 (286)
79 TIGR03522 GldA_ABC_ATP gliding 99.9 1.3E-25 2.8E-30 238.4 10.5 177 9-203 2-221 (301)
80 PRK13548 hmuV hemin importer A 99.9 1.1E-25 2.5E-30 233.6 9.9 179 9-203 2-230 (258)
81 COG4152 ABC-type uncharacteriz 99.9 8.3E-26 1.8E-30 225.4 8.4 178 8-202 1-218 (300)
82 cd03219 ABC_Mj1267_LivG_branch 99.9 1.6E-25 3.5E-30 228.7 10.8 177 10-203 1-232 (236)
83 PRK13641 cbiO cobalt transport 99.9 2E-25 4.3E-30 235.4 11.4 181 9-203 2-234 (287)
84 COG1123 ATPase components of v 99.9 1E-25 2.2E-30 250.1 9.5 188 8-204 4-245 (539)
85 PRK13636 cbiO cobalt transport 99.9 1.5E-25 3.3E-30 235.8 10.3 182 8-204 4-232 (283)
86 PRK11264 putative amino-acid A 99.9 1.4E-25 3.1E-30 231.3 9.9 179 8-203 2-233 (250)
87 cd03301 ABC_MalK_N The N-termi 99.9 1.5E-25 3.1E-30 225.6 9.6 171 10-196 1-213 (213)
88 PRK11701 phnK phosphonate C-P 99.9 2.5E-25 5.4E-30 230.8 11.6 180 8-203 5-241 (258)
89 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.5E-25 3.2E-30 226.9 9.7 177 10-198 1-218 (220)
90 PRK10253 iron-enterobactin tra 99.9 1.4E-25 3E-30 233.8 9.7 180 8-203 6-233 (265)
91 PRK13635 cbiO cobalt transport 99.9 2.3E-25 4.9E-30 234.0 11.1 182 8-204 4-230 (279)
92 TIGR03410 urea_trans_UrtE urea 99.9 1.7E-25 3.8E-30 227.8 9.7 176 10-201 1-219 (230)
93 TIGR00960 3a0501s02 Type II (G 99.9 1.5E-25 3.3E-30 226.1 9.0 169 9-192 1-216 (216)
94 PRK09493 glnQ glutamine ABC tr 99.9 2.1E-25 4.5E-30 228.8 10.1 178 9-203 1-225 (240)
95 PRK13631 cbiO cobalt transport 99.9 3.6E-25 7.8E-30 236.8 12.0 186 7-206 19-268 (320)
96 cd03224 ABC_TM1139_LivF_branch 99.9 2.1E-25 4.5E-30 225.8 9.5 175 10-201 1-219 (222)
97 PRK13648 cbiO cobalt transport 99.9 5E-25 1.1E-29 230.1 12.5 183 7-204 5-232 (269)
98 cd03268 ABC_BcrA_bacitracin_re 99.9 2.8E-25 6.1E-30 222.9 10.0 170 10-196 1-208 (208)
99 PRK11248 tauB taurine transpor 99.9 3.6E-25 7.8E-30 229.6 11.0 176 9-199 1-216 (255)
100 PRK10575 iron-hydroxamate tran 99.9 2.7E-25 5.9E-30 231.6 10.1 189 7-211 9-245 (265)
101 PRK13633 cobalt transporter AT 99.9 3.7E-25 8E-30 232.5 11.2 184 7-204 2-234 (280)
102 PRK14242 phosphate transporter 99.9 4.1E-25 8.8E-30 228.4 10.9 183 8-204 5-238 (253)
103 PRK10070 glycine betaine trans 99.9 2.2E-25 4.7E-30 244.4 9.3 183 8-203 3-254 (400)
104 PRK13644 cbiO cobalt transport 99.9 3.4E-25 7.5E-30 232.1 10.3 180 9-205 1-226 (274)
105 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3E-25 6.5E-30 228.0 9.5 178 10-202 1-224 (242)
106 PRK15112 antimicrobial peptide 99.9 3.5E-25 7.6E-30 231.1 10.0 183 8-203 3-239 (267)
107 PRK10938 putative molybdenum t 99.9 3.9E-25 8.5E-30 249.6 11.1 179 9-204 3-225 (490)
108 PRK15439 autoinducer 2 ABC tra 99.9 4.7E-25 1E-29 250.1 11.8 181 6-203 8-229 (510)
109 PRK11124 artP arginine transpo 99.9 4.5E-25 9.8E-30 226.6 10.3 176 9-201 2-228 (242)
110 PRK10771 thiQ thiamine transpo 99.9 3.6E-25 7.7E-30 226.0 9.4 181 9-207 1-223 (232)
111 COG4525 TauB ABC-type taurine 99.9 3.8E-25 8.2E-30 214.2 8.9 180 7-199 1-220 (259)
112 cd03263 ABC_subfamily_A The AB 99.9 4.4E-25 9.5E-30 223.2 9.8 175 10-200 1-218 (220)
113 COG1129 MglA ABC-type sugar tr 99.9 4.6E-25 9.9E-30 243.3 10.7 179 6-201 5-233 (500)
114 cd03266 ABC_NatA_sodium_export 99.9 5.8E-25 1.3E-29 222.0 10.5 174 9-196 1-218 (218)
115 cd03269 ABC_putative_ATPase Th 99.9 4.9E-25 1.1E-29 221.4 9.7 170 10-196 1-210 (210)
116 PRK13649 cbiO cobalt transport 99.9 6.8E-25 1.5E-29 230.3 11.1 182 8-203 1-234 (280)
117 PRK11144 modC molybdate transp 99.9 3.9E-25 8.5E-30 239.6 9.5 179 9-206 1-221 (352)
118 PRK11629 lolD lipoprotein tran 99.9 8.4E-25 1.8E-29 223.4 11.2 176 8-197 4-228 (233)
119 cd03214 ABC_Iron-Siderophores_ 99.9 8.8E-25 1.9E-29 214.9 10.8 168 11-195 1-179 (180)
120 TIGR03005 ectoine_ehuA ectoine 99.9 5.2E-25 1.1E-29 227.6 9.6 178 10-203 1-236 (252)
121 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.9E-25 8.6E-30 223.3 8.4 169 10-192 1-218 (218)
122 TIGR02769 nickel_nikE nickel i 99.9 7.4E-25 1.6E-29 228.4 10.6 182 9-203 2-240 (265)
123 PRK13642 cbiO cobalt transport 99.9 8.3E-25 1.8E-29 229.5 11.1 183 8-204 3-230 (277)
124 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2.9E-25 6.3E-30 232.0 7.5 177 11-203 26-250 (269)
125 PRK13639 cbiO cobalt transport 99.9 6.9E-25 1.5E-29 229.9 10.4 180 9-204 1-227 (275)
126 PRK14247 phosphate ABC transpo 99.9 8.9E-25 1.9E-29 225.5 11.0 179 7-203 1-234 (250)
127 PRK10619 histidine/lysine/argi 99.9 6.7E-25 1.5E-29 227.5 10.1 177 9-202 5-240 (257)
128 cd03229 ABC_Class3 This class 99.9 9.6E-25 2.1E-29 214.2 10.4 165 10-191 1-178 (178)
129 cd03230 ABC_DR_subfamily_A Thi 99.9 5.7E-25 1.2E-29 214.8 8.7 165 10-192 1-173 (173)
130 TIGR01188 drrA daunorubicin re 99.9 4.1E-25 8.9E-30 234.6 8.2 165 25-203 6-213 (302)
131 cd03226 ABC_cobalt_CbiO_domain 99.9 5.2E-25 1.1E-29 220.6 8.5 166 12-193 2-205 (205)
132 TIGR01186 proV glycine betaine 99.9 3.7E-25 8E-30 239.8 7.8 167 25-204 6-220 (363)
133 PRK09984 phosphonate/organopho 99.9 1E-24 2.2E-29 226.7 10.6 178 8-201 3-240 (262)
134 PRK14268 phosphate ABC transpo 99.9 1.2E-24 2.6E-29 225.8 11.0 179 7-203 10-242 (258)
135 PRK13645 cbiO cobalt transport 99.9 9.8E-25 2.1E-29 230.3 10.5 183 9-204 6-241 (289)
136 PRK09700 D-allose transporter 99.9 1E-24 2.2E-29 247.4 11.2 178 8-202 4-233 (510)
137 PRK15056 manganese/iron transp 99.9 1.9E-24 4E-29 226.2 12.3 182 9-207 6-234 (272)
138 cd03257 ABC_NikE_OppD_transpor 99.9 1.1E-24 2.3E-29 221.3 10.1 175 9-196 1-228 (228)
139 PRK13640 cbiO cobalt transport 99.9 1.3E-24 2.7E-29 228.7 10.9 182 8-204 4-233 (282)
140 TIGR03415 ABC_choXWV_ATP choli 99.9 5.7E-25 1.2E-29 239.5 8.5 182 10-204 1-255 (382)
141 PRK14273 phosphate ABC transpo 99.9 1.3E-24 2.9E-29 224.8 10.8 179 7-203 5-238 (254)
142 PRK10584 putative ABC transpor 99.9 1.5E-24 3.2E-29 220.7 11.0 173 8-194 5-226 (228)
143 PRK13632 cbiO cobalt transport 99.9 1.6E-24 3.5E-29 226.6 11.5 183 7-204 5-232 (271)
144 TIGR03740 galliderm_ABC gallid 99.9 1.3E-24 2.9E-29 220.4 10.5 174 10-200 1-210 (223)
145 cd03215 ABC_Carb_Monos_II This 99.9 1.1E-24 2.4E-29 214.5 9.5 163 8-192 3-182 (182)
146 cd03246 ABCC_Protease_Secretio 99.9 9E-25 2E-29 213.4 8.7 166 10-192 1-173 (173)
147 TIGR02323 CP_lyasePhnK phospho 99.9 1.3E-24 2.7E-29 224.7 10.3 180 8-203 2-238 (253)
148 PRK10418 nikD nickel transport 99.9 1.3E-24 2.9E-29 225.0 10.4 178 9-203 4-230 (254)
149 TIGR00972 3a0107s01c2 phosphat 99.9 1.3E-24 2.9E-29 223.9 10.3 177 9-203 1-232 (247)
150 TIGR02673 FtsE cell division A 99.9 1.2E-24 2.6E-29 219.1 9.7 167 9-191 1-214 (214)
151 cd03260 ABC_PstB_phosphate_tra 99.9 1.4E-24 3.1E-29 220.7 10.0 177 10-200 1-226 (227)
152 TIGR03873 F420-0_ABC_ATP propo 99.9 1.3E-24 2.8E-29 225.2 9.7 185 10-211 2-234 (256)
153 PRK10247 putative ABC transpor 99.9 1.9E-24 4.1E-29 219.9 10.3 176 6-197 4-221 (225)
154 cd03225 ABC_cobalt_CbiO_domain 99.9 1E-24 2.2E-29 219.2 7.9 166 11-191 1-211 (211)
155 TIGR01978 sufC FeS assembly AT 99.9 2.4E-24 5.2E-29 221.0 10.8 176 10-200 1-231 (243)
156 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.5E-24 3.2E-29 218.2 9.0 169 10-196 1-211 (211)
157 PRK14269 phosphate ABC transpo 99.9 2.2E-24 4.7E-29 222.3 10.5 181 8-203 1-230 (246)
158 PRK14267 phosphate ABC transpo 99.9 2.2E-24 4.8E-29 222.9 10.4 180 6-203 1-237 (253)
159 PRK10261 glutathione transport 99.9 1.7E-24 3.7E-29 250.9 10.6 185 6-203 9-258 (623)
160 TIGR02211 LolD_lipo_ex lipopro 99.9 2E-24 4.3E-29 218.6 9.6 171 9-193 1-220 (221)
161 PRK14270 phosphate ABC transpo 99.9 2.5E-24 5.4E-29 222.4 10.4 180 7-204 2-236 (251)
162 PRK10908 cell division protein 99.9 2.3E-24 4.9E-29 218.6 9.8 170 9-194 1-217 (222)
163 cd03217 ABC_FeS_Assembly ABC-t 99.9 3.6E-24 7.7E-29 214.1 11.1 172 10-197 1-188 (200)
164 PRK13549 xylose transporter AT 99.9 1.6E-24 3.4E-29 245.7 9.4 178 8-202 4-231 (506)
165 PRK10762 D-ribose transporter 99.9 2.2E-24 4.8E-29 244.2 10.6 177 8-201 3-228 (501)
166 cd03264 ABC_drug_resistance_li 99.9 2.4E-24 5.3E-29 216.6 9.7 168 10-196 1-211 (211)
167 PRK13547 hmuV hemin importer A 99.9 2E-24 4.3E-29 226.1 9.3 187 9-211 1-252 (272)
168 PRK14274 phosphate ABC transpo 99.9 3.2E-24 7E-29 222.6 10.7 180 7-204 10-244 (259)
169 PRK14258 phosphate ABC transpo 99.9 3.5E-24 7.6E-29 222.8 11.0 183 8-205 6-247 (261)
170 PRK10419 nikE nickel transport 99.9 2.5E-24 5.5E-29 224.8 9.8 183 7-202 1-240 (268)
171 PRK14248 phosphate ABC transpo 99.9 3.4E-24 7.5E-29 223.6 10.8 183 8-204 20-253 (268)
172 cd03262 ABC_HisP_GlnQ_permease 99.9 2.3E-24 4.9E-29 216.8 9.0 166 10-192 1-213 (213)
173 cd03292 ABC_FtsE_transporter F 99.9 2.2E-24 4.8E-29 217.0 8.9 167 10-192 1-214 (214)
174 PRK10744 pstB phosphate transp 99.9 3.5E-24 7.7E-29 222.6 10.6 183 8-204 12-245 (260)
175 cd03232 ABC_PDR_domain2 The pl 99.9 4.9E-24 1.1E-28 211.8 11.1 175 9-196 3-192 (192)
176 cd03247 ABCC_cytochrome_bd The 99.9 3.2E-24 7E-29 210.4 9.7 169 10-196 1-178 (178)
177 PRK14246 phosphate ABC transpo 99.9 4E-24 8.7E-29 222.0 10.9 180 7-204 8-242 (257)
178 PRK14245 phosphate ABC transpo 99.9 4E-24 8.8E-29 220.7 10.4 182 8-204 2-235 (250)
179 PRK10261 glutathione transport 99.9 3.3E-24 7.1E-29 248.6 10.8 184 8-204 312-554 (623)
180 cd03251 ABCC_MsbA MsbA is an e 99.9 6.8E-24 1.5E-28 216.5 11.8 176 10-203 1-225 (234)
181 cd03213 ABCG_EPDR ABCG transpo 99.9 7.2E-24 1.6E-28 211.0 11.6 174 9-195 3-193 (194)
182 PRK14262 phosphate ABC transpo 99.9 4.4E-24 9.5E-29 220.3 10.4 179 7-203 1-234 (250)
183 PRK14239 phosphate transporter 99.9 4.2E-24 9.2E-29 220.6 10.3 181 8-204 4-237 (252)
184 PRK14235 phosphate transporter 99.9 4.7E-24 1E-28 222.6 10.7 179 7-203 17-251 (267)
185 cd03252 ABCC_Hemolysin The ABC 99.9 7.2E-24 1.6E-28 216.9 11.6 176 10-203 1-225 (237)
186 PRK14249 phosphate ABC transpo 99.9 4.9E-24 1.1E-28 220.2 10.4 181 7-205 2-237 (251)
187 cd03254 ABCC_Glucan_exporter_l 99.9 8.1E-24 1.8E-28 215.3 11.7 174 9-201 2-224 (229)
188 PRK14251 phosphate ABC transpo 99.9 5.6E-24 1.2E-28 219.6 10.7 177 8-202 3-234 (251)
189 TIGR02142 modC_ABC molybdenum 99.9 3.5E-24 7.6E-29 232.3 9.6 175 14-206 4-224 (354)
190 PRK15134 microcin C ABC transp 99.9 4.1E-24 8.9E-29 243.5 10.5 183 8-203 4-246 (529)
191 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.9E-24 4E-29 220.0 6.8 170 10-196 23-224 (224)
192 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 7.2E-24 1.6E-28 217.0 11.0 176 10-202 1-225 (238)
193 PRK14253 phosphate ABC transpo 99.9 4.7E-24 1E-28 220.0 9.7 177 8-202 2-232 (249)
194 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 6.6E-24 1.4E-28 201.6 9.9 141 10-191 1-144 (144)
195 PRK14237 phosphate transporter 99.9 7E-24 1.5E-28 221.3 10.9 181 6-204 17-252 (267)
196 TIGR00968 3a0106s01 sulfate AB 99.9 4.9E-24 1.1E-28 218.5 9.5 178 10-203 1-220 (237)
197 TIGR01277 thiQ thiamine ABC tr 99.9 6.3E-24 1.4E-28 214.1 9.9 170 10-197 1-212 (213)
198 PRK13545 tagH teichoic acids e 99.9 4.8E-24 1E-28 237.6 9.8 182 8-203 20-232 (549)
199 cd03233 ABC_PDR_domain1 The pl 99.9 7.7E-24 1.7E-28 212.1 10.4 175 9-196 3-202 (202)
200 CHL00131 ycf16 sulfate ABC tra 99.9 1.2E-23 2.5E-28 217.3 11.8 177 8-199 6-237 (252)
201 cd03223 ABCD_peroxisomal_ALDP 99.9 1.5E-23 3.3E-28 203.7 11.9 158 10-190 1-164 (166)
202 cd03235 ABC_Metallic_Cations A 99.9 7E-24 1.5E-28 213.6 9.9 167 11-195 1-212 (213)
203 PRK14240 phosphate transporter 99.9 8.5E-24 1.8E-28 218.2 10.7 177 9-203 3-234 (250)
204 PRK14256 phosphate ABC transpo 99.9 6.8E-24 1.5E-28 219.3 9.9 179 8-204 3-237 (252)
205 PRK14259 phosphate ABC transpo 99.9 6.4E-24 1.4E-28 221.9 9.7 179 8-203 12-253 (269)
206 PRK14241 phosphate transporter 99.9 7.7E-24 1.7E-28 219.7 10.2 179 8-203 3-242 (258)
207 cd03300 ABC_PotA_N PotA is an 99.9 6.3E-24 1.4E-28 217.0 9.3 177 10-202 1-219 (232)
208 TIGR03269 met_CoM_red_A2 methy 99.9 8.1E-24 1.8E-28 240.6 10.8 183 7-202 277-516 (520)
209 cd03228 ABCC_MRP_Like The MRP 99.9 1.7E-23 3.6E-28 204.1 11.3 163 10-191 1-171 (171)
210 cd03297 ABC_ModC_molybdenum_tr 99.9 7.7E-24 1.7E-28 213.5 9.1 167 10-196 2-214 (214)
211 cd03267 ABC_NatA_like Similar 99.9 6.5E-24 1.4E-28 217.6 8.7 174 10-196 1-236 (236)
212 cd03245 ABCC_bacteriocin_expor 99.9 1E-23 2.2E-28 213.3 9.9 169 10-195 3-219 (220)
213 PRK14238 phosphate transporter 99.9 1.2E-23 2.5E-28 220.2 10.5 180 7-204 22-256 (271)
214 PRK13546 teichoic acids export 99.9 1.2E-23 2.6E-28 219.3 10.5 181 8-202 3-231 (264)
215 PRK09580 sufC cysteine desulfu 99.9 1.3E-23 2.8E-28 216.3 10.6 176 9-199 1-231 (248)
216 COG3845 ABC-type uncharacteriz 99.9 9.2E-24 2E-28 229.0 9.8 175 7-198 2-224 (501)
217 PRK14254 phosphate ABC transpo 99.9 1.4E-23 3.1E-28 221.1 11.0 179 7-203 37-269 (285)
218 PRK14243 phosphate transporter 99.9 1.3E-23 2.8E-28 218.9 10.4 185 7-204 8-249 (264)
219 COG4586 ABC-type uncharacteriz 99.9 3.3E-24 7.2E-29 217.1 5.5 182 7-202 1-245 (325)
220 cd03222 ABC_RNaseL_inhibitor T 99.9 9.6E-24 2.1E-28 207.2 8.5 141 13-188 4-147 (177)
221 cd03299 ABC_ModC_like Archeal 99.9 1.2E-23 2.5E-28 215.5 9.2 176 10-202 1-218 (235)
222 PRK14257 phosphate ABC transpo 99.9 1.6E-23 3.5E-28 224.9 10.7 187 8-206 79-316 (329)
223 PRK14272 phosphate ABC transpo 99.9 1.7E-23 3.7E-28 216.0 10.5 177 9-203 4-236 (252)
224 COG4181 Predicted ABC-type tra 99.9 1.1E-23 2.5E-28 200.1 8.2 173 9-195 6-227 (228)
225 PRK14236 phosphate transporter 99.9 2.1E-23 4.5E-28 218.3 11.1 179 7-203 23-256 (272)
226 PRK11288 araG L-arabinose tran 99.9 2E-23 4.4E-28 236.3 11.9 174 8-198 3-224 (501)
227 cd03253 ABCC_ATM1_transporter 99.9 2.6E-23 5.6E-28 212.5 11.5 174 10-202 1-223 (236)
228 PRK14265 phosphate ABC transpo 99.9 2.4E-23 5.2E-28 218.2 11.4 180 8-204 19-259 (274)
229 PRK14275 phosphate ABC transpo 99.9 1.7E-23 3.6E-28 220.7 10.2 182 7-203 37-270 (286)
230 COG1134 TagH ABC-type polysacc 99.9 1.2E-23 2.6E-28 211.4 8.6 182 7-202 1-235 (249)
231 cd03244 ABCC_MRP_domain2 Domai 99.9 2.2E-23 4.7E-28 211.0 10.3 171 10-197 3-220 (221)
232 PRK13549 xylose transporter AT 99.9 1.5E-23 3.4E-28 237.6 10.2 180 8-201 258-492 (506)
233 PRK14255 phosphate ABC transpo 99.9 2.5E-23 5.3E-28 215.0 10.7 181 8-204 4-237 (252)
234 cd03369 ABCC_NFT1 Domain 2 of 99.9 4.9E-23 1.1E-27 206.6 12.6 172 9-198 6-207 (207)
235 PRK14261 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 215.8 10.1 181 7-203 4-237 (253)
236 PRK14244 phosphate ABC transpo 99.9 2.2E-23 4.8E-28 215.3 10.1 177 10-204 6-238 (251)
237 PRK13543 cytochrome c biogenes 99.9 3.6E-23 7.8E-28 208.9 11.3 164 7-186 9-210 (214)
238 TIGR02633 xylG D-xylose ABC tr 99.9 3.4E-23 7.4E-28 234.4 12.3 176 9-201 1-228 (500)
239 PRK14266 phosphate ABC transpo 99.9 3.2E-23 7E-28 213.8 10.8 183 7-203 1-234 (250)
240 TIGR03269 met_CoM_red_A2 methy 99.9 1.4E-23 3E-28 238.7 8.8 178 10-201 1-256 (520)
241 PRK14260 phosphate ABC transpo 99.9 3.2E-23 7E-28 215.2 10.7 181 6-203 4-243 (259)
242 PRK14271 phosphate ABC transpo 99.9 2.8E-23 6.2E-28 217.9 10.4 179 7-203 19-251 (276)
243 PRK15064 ABC transporter ATP-b 99.9 3.8E-23 8.3E-28 235.6 11.8 174 9-202 1-241 (530)
244 PRK15134 microcin C ABC transp 99.9 1.9E-23 4E-28 238.2 9.1 182 8-203 274-515 (529)
245 COG4161 ArtP ABC-type arginine 99.9 3E-23 6.5E-28 195.4 8.8 174 8-199 1-226 (242)
246 COG2274 SunT ABC-type bacterio 99.9 2.5E-23 5.4E-28 241.4 10.1 178 9-204 471-697 (709)
247 PRK03695 vitamin B12-transport 99.9 1.6E-23 3.4E-28 216.4 7.5 180 11-212 2-231 (248)
248 cd03289 ABCC_CFTR2 The CFTR su 99.9 2.8E-23 6E-28 217.7 9.1 177 10-204 3-226 (275)
249 cd03248 ABCC_TAP TAP, the Tran 99.9 8.5E-23 1.8E-27 207.5 12.4 172 5-192 7-226 (226)
250 TIGR02770 nickel_nikD nickel i 99.9 2.1E-23 4.5E-28 212.8 7.8 164 27-203 1-215 (230)
251 PRK11147 ABC transporter ATPas 99.9 5.4E-23 1.2E-27 239.0 12.1 175 7-201 1-241 (635)
252 cd03234 ABCG_White The White s 99.9 5.8E-23 1.2E-27 209.0 10.6 174 9-196 3-226 (226)
253 COG1119 ModF ABC-type molybden 99.9 8.8E-23 1.9E-27 205.0 11.7 176 6-197 28-256 (257)
254 PRK11819 putative ABC transpor 99.9 5.1E-23 1.1E-27 235.8 11.4 176 7-201 4-248 (556)
255 PRK10982 galactose/methyl gala 99.9 3.9E-23 8.4E-28 233.5 10.1 173 12-201 1-221 (491)
256 COG4172 ABC-type uncharacteriz 99.9 3E-23 6.6E-28 219.1 8.2 185 6-204 3-248 (534)
257 PRK13538 cytochrome c biogenes 99.9 8E-23 1.7E-27 204.8 10.9 157 9-181 1-197 (204)
258 TIGR01184 ntrCD nitrate transp 99.9 4E-23 8.6E-28 211.0 8.4 160 29-201 2-202 (230)
259 TIGR02633 xylG D-xylose ABC tr 99.9 5.5E-23 1.2E-27 232.7 10.0 178 8-199 256-488 (500)
260 PRK14263 phosphate ABC transpo 99.9 9.2E-23 2E-27 212.3 10.6 181 6-203 5-245 (261)
261 cd03288 ABCC_SUR2 The SUR doma 99.9 1.9E-22 4.1E-27 209.3 12.7 179 7-202 17-242 (257)
262 PRK09700 D-allose transporter 99.9 6.9E-23 1.5E-27 232.5 10.3 174 8-200 264-495 (510)
263 PRK13539 cytochrome c biogenes 99.9 1.3E-22 2.8E-27 203.9 11.0 154 9-178 2-192 (207)
264 PRK10636 putative ABC transpor 99.9 9.9E-23 2.2E-27 236.7 11.4 172 8-199 311-513 (638)
265 PRK14264 phosphate ABC transpo 99.9 1.3E-22 2.9E-27 215.7 11.5 178 8-203 44-289 (305)
266 PRK14252 phosphate ABC transpo 99.9 1.5E-22 3.2E-27 211.0 11.2 178 8-203 15-249 (265)
267 cd03250 ABCC_MRP_domain1 Domai 99.9 1.8E-22 3.9E-27 202.0 11.3 167 10-191 1-204 (204)
268 COG4987 CydC ABC-type transpor 99.9 1.4E-22 3E-27 221.4 10.9 177 9-203 336-561 (573)
269 PRK15064 ABC transporter ATP-b 99.9 9.6E-23 2.1E-27 232.4 10.1 175 8-202 318-524 (530)
270 cd03231 ABC_CcmA_heme_exporter 99.9 1.9E-22 4.1E-27 201.8 11.0 161 10-186 1-198 (201)
271 TIGR02324 CP_lyasePhnL phospho 99.9 2E-22 4.4E-27 204.4 10.9 165 9-186 1-222 (224)
272 TIGR02982 heterocyst_DevA ABC 99.9 1.2E-22 2.5E-27 205.9 9.1 169 10-192 2-219 (220)
273 COG4988 CydD ABC-type transpor 99.9 1.8E-22 3.9E-27 223.5 11.0 178 10-205 321-545 (559)
274 KOG0055 Multidrug/pheromone ex 99.9 1.6E-22 3.4E-27 239.3 10.8 181 9-205 350-578 (1228)
275 TIGR01257 rim_protein retinal- 99.9 1.5E-22 3.2E-27 253.8 10.8 179 8-202 1936-2158(2272)
276 PRK10636 putative ABC transpor 99.9 2.5E-22 5.4E-27 233.4 12.0 172 9-200 1-233 (638)
277 cd03291 ABCC_CFTR1 The CFTR su 99.9 4.4E-22 9.6E-27 209.4 12.8 176 7-203 37-247 (282)
278 COG4172 ABC-type uncharacteriz 99.9 1.2E-22 2.6E-27 214.7 8.1 185 7-205 274-518 (534)
279 PRK10938 putative molybdenum t 99.9 3E-22 6.5E-27 226.2 12.0 174 7-196 258-485 (490)
280 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.9E-22 4.1E-27 237.5 10.6 175 9-203 477-700 (710)
281 TIGR03608 L_ocin_972_ABC putat 99.9 1.3E-22 2.9E-27 202.9 7.9 157 12-185 1-205 (206)
282 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 2.1E-22 4.4E-27 230.7 10.2 176 8-202 3-247 (552)
283 PRK11176 lipid transporter ATP 99.9 2.5E-22 5.5E-27 231.2 10.9 178 9-204 341-568 (582)
284 PRK15439 autoinducer 2 ABC tra 99.9 1.6E-22 3.4E-27 229.6 8.7 174 8-203 267-492 (510)
285 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.8E-22 6E-27 235.3 11.0 175 9-203 451-673 (686)
286 TIGR03771 anch_rpt_ABC anchore 99.9 2.9E-22 6.3E-27 203.7 9.5 161 38-211 4-209 (223)
287 PRK13540 cytochrome c biogenes 99.9 7.1E-22 1.5E-26 197.4 11.7 157 9-182 1-195 (200)
288 PRK10762 D-ribose transporter 99.9 3.5E-22 7.5E-27 226.3 9.9 172 8-201 256-482 (501)
289 PRK10790 putative multidrug tr 99.9 4.7E-22 1E-26 229.5 11.0 176 9-203 340-563 (592)
290 PRK11288 araG L-arabinose tran 99.9 3.7E-22 8E-27 226.1 9.6 173 9-202 257-484 (501)
291 TIGR01189 ccmA heme ABC export 99.9 8.6E-22 1.9E-26 196.4 11.0 152 10-177 1-191 (198)
292 TIGR03375 type_I_sec_LssB type 99.9 4.7E-22 1E-26 233.6 10.6 176 9-202 463-687 (694)
293 PRK10982 galactose/methyl gala 99.9 3.5E-22 7.6E-27 225.7 9.2 173 8-199 249-476 (491)
294 PRK11160 cysteine/glutathione 99.9 6E-22 1.3E-26 227.9 11.1 178 9-204 338-563 (574)
295 PRK13409 putative ATPase RIL; 99.9 6.8E-22 1.5E-26 227.2 10.5 172 8-197 339-536 (590)
296 KOG0058 Peptide exporter, ABC 99.9 6.3E-22 1.4E-26 223.1 10.0 179 9-204 465-692 (716)
297 PRK15177 Vi polysaccharide exp 99.9 4E-22 8.7E-27 201.4 7.2 160 27-201 2-190 (213)
298 TIGR01257 rim_protein retinal- 99.9 6.1E-22 1.3E-26 248.4 10.3 178 8-201 927-1147(2272)
299 PRK11174 cysteine/glutathione 99.9 7.8E-22 1.7E-26 227.5 10.5 176 9-204 349-573 (588)
300 TIGR00958 3a01208 Conjugate Tr 99.9 7.3E-22 1.6E-26 232.4 10.4 177 9-204 478-703 (711)
301 COG4167 SapF ABC-type antimicr 99.9 5.7E-22 1.2E-26 190.2 7.5 186 7-205 2-241 (267)
302 cd00267 ABC_ATPase ABC (ATP-bi 99.9 8.3E-22 1.8E-26 189.2 8.8 152 12-191 2-157 (157)
303 COG1132 MdlB ABC-type multidru 99.9 1.1E-21 2.3E-26 225.5 10.9 177 9-204 328-553 (567)
304 PLN03073 ABC transporter F fam 99.9 1.1E-21 2.5E-26 229.5 11.2 173 8-199 507-710 (718)
305 COG4148 ModC ABC-type molybdat 99.9 6.3E-22 1.4E-26 201.0 7.7 171 25-208 11-223 (352)
306 PRK11819 putative ABC transpor 99.9 9.9E-22 2.1E-26 225.3 10.3 171 8-197 323-527 (556)
307 TIGR01842 type_I_sec_PrtD type 99.9 1.3E-21 2.9E-26 223.7 11.1 178 9-202 316-541 (544)
308 cd03237 ABC_RNaseL_inhibitor_d 99.9 8.3E-22 1.8E-26 203.5 8.6 141 38-188 23-191 (246)
309 COG4107 PhnK ABC-type phosphon 99.9 5.9E-22 1.3E-26 188.7 6.7 181 7-204 4-242 (258)
310 COG1101 PhnK ABC-type uncharac 99.9 8.7E-22 1.9E-26 193.7 7.9 178 9-201 1-236 (263)
311 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.4E-21 2.9E-26 224.0 10.9 167 8-193 321-520 (552)
312 TIGR01193 bacteriocin_ABC ABC- 99.9 1.2E-21 2.6E-26 230.6 10.6 175 9-203 473-697 (708)
313 cd03236 ABC_RNaseL_inhibitor_d 99.9 7.2E-22 1.6E-26 205.0 7.6 165 13-195 4-219 (255)
314 TIGR01192 chvA glucan exporter 99.8 1.7E-21 3.7E-26 224.6 11.0 176 9-203 334-558 (585)
315 PRK13541 cytochrome c biogenes 99.8 3.7E-21 8.1E-26 191.4 11.9 153 9-178 1-188 (195)
316 PRK13657 cyclic beta-1,2-gluca 99.8 1.4E-21 3.1E-26 225.4 10.2 176 9-202 334-557 (588)
317 TIGR01846 type_I_sec_HlyB type 99.8 1.8E-21 3.9E-26 228.7 11.1 177 9-203 455-680 (694)
318 PRK10789 putative multidrug tr 99.8 1.9E-21 4.1E-26 223.5 11.1 178 9-203 313-538 (569)
319 COG0488 Uup ATPase components 99.8 3.1E-21 6.7E-26 217.5 12.2 171 7-197 1-234 (530)
320 cd03290 ABCC_SUR1_N The SUR do 99.8 2.6E-21 5.6E-26 195.7 10.1 163 11-190 2-217 (218)
321 TIGR02203 MsbA_lipidA lipid A 99.8 2.1E-21 4.5E-26 223.0 10.5 178 9-203 330-556 (571)
322 PRK11147 ABC transporter ATPas 99.8 2.9E-21 6.3E-26 224.6 11.7 169 8-195 318-519 (635)
323 KOG0057 Mitochondrial Fe/S clu 99.8 2.2E-21 4.8E-26 212.2 9.8 175 9-203 351-574 (591)
324 COG4674 Uncharacterized ABC-ty 99.8 6.8E-22 1.5E-26 191.7 4.9 186 8-211 4-243 (249)
325 TIGR02204 MsbA_rel ABC transpo 99.8 3.4E-21 7.4E-26 221.6 11.1 179 9-203 337-563 (576)
326 PRK10535 macrolide transporter 99.8 1E-20 2.3E-25 220.3 13.4 180 8-202 3-231 (648)
327 PLN03211 ABC transporter G-25; 99.8 3E-21 6.5E-26 224.5 8.6 163 25-201 81-294 (659)
328 TIGR01166 cbiO cobalt transpor 99.8 6.9E-21 1.5E-25 188.5 9.5 139 25-176 5-190 (190)
329 PRK10522 multidrug transporter 99.8 8.6E-21 1.9E-25 217.1 11.7 170 9-195 322-530 (547)
330 cd03238 ABC_UvrA The excision 99.8 7.7E-21 1.7E-25 186.5 9.5 150 24-192 7-166 (176)
331 TIGR01187 potA spermidine/putr 99.8 1.9E-21 4.2E-26 208.6 5.4 149 45-204 1-191 (325)
332 PLN03232 ABC transporter C fam 99.8 9.5E-21 2.1E-25 237.8 11.5 178 9-204 1234-1459(1495)
333 PLN03130 ABC transporter C fam 99.8 1E-20 2.2E-25 238.1 11.4 178 9-204 1237-1462(1622)
334 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.5E-20 3.3E-25 215.5 11.6 172 9-196 337-552 (555)
335 COG4619 ABC-type uncharacteriz 99.8 4.4E-21 9.6E-26 182.0 5.4 167 9-192 3-212 (223)
336 PLN03073 ABC transporter F fam 99.8 2.4E-20 5.2E-25 218.4 12.1 176 7-199 175-427 (718)
337 PTZ00265 multidrug resistance 99.8 1.7E-20 3.7E-25 234.0 10.2 167 9-188 382-654 (1466)
338 TIGR00957 MRP_assoc_pro multi 99.8 3.1E-20 6.7E-25 233.6 11.3 178 9-204 1284-1509(1522)
339 PTZ00243 ABC transporter; Prov 99.8 4.8E-20 1E-24 231.7 11.5 177 9-203 1308-1533(1560)
340 TIGR02868 CydC thiol reductant 99.8 8E-20 1.7E-24 208.3 12.2 149 9-173 334-529 (529)
341 PTZ00265 multidrug resistance 99.8 4.1E-20 8.9E-25 230.7 10.6 181 9-203 1165-1452(1466)
342 COG0396 sufC Cysteine desulfur 99.8 7E-20 1.5E-24 182.3 9.5 178 7-198 1-229 (251)
343 TIGR02857 CydD thiol reductant 99.8 5.9E-20 1.3E-24 209.4 10.0 160 9-185 320-528 (529)
344 PRK13409 putative ATPase RIL; 99.8 5.3E-20 1.2E-24 211.6 9.3 157 15-188 79-286 (590)
345 TIGR00956 3a01205 Pleiotropic 99.8 1.9E-19 4.1E-24 224.4 13.6 208 9-232 759-1020(1394)
346 TIGR00957 MRP_assoc_pro multi 99.8 1.6E-19 3.4E-24 227.3 12.7 180 9-203 636-850 (1522)
347 PLN03232 ABC transporter C fam 99.8 1.3E-19 2.9E-24 227.5 10.4 179 9-203 614-828 (1495)
348 TIGR01271 CFTR_protein cystic 99.8 1.5E-19 3.3E-24 226.8 10.6 176 9-203 1217-1440(1490)
349 PLN03130 ABC transporter C fam 99.8 2.4E-19 5.1E-24 225.9 11.3 179 9-203 614-828 (1622)
350 KOG0055 Multidrug/pheromone ex 99.8 3.1E-19 6.8E-24 211.5 10.5 179 9-203 987-1213(1228)
351 COG4138 BtuD ABC-type cobalami 99.8 7E-20 1.5E-24 174.8 4.1 187 8-217 2-235 (248)
352 COG4618 ArpD ABC-type protease 99.8 3.1E-19 6.7E-24 193.9 9.5 179 9-203 334-560 (580)
353 cd03270 ABC_UvrA_I The excisio 99.8 3E-19 6.5E-24 182.1 8.7 80 108-196 136-226 (226)
354 TIGR00954 3a01203 Peroxysomal 99.8 4.3E-19 9.2E-24 207.1 10.4 164 8-190 450-655 (659)
355 PLN03140 ABC transporter G fam 99.8 9.3E-19 2E-23 217.9 13.5 190 9-213 867-1118(1470)
356 KOG0056 Heavy metal exporter H 99.8 4.9E-19 1.1E-23 190.4 7.7 177 9-203 537-761 (790)
357 TIGR01271 CFTR_protein cystic 99.8 1.3E-18 2.8E-23 218.5 11.1 162 26-203 440-636 (1490)
358 COG0488 Uup ATPase components 99.8 8.1E-19 1.7E-23 198.0 8.3 164 7-188 319-511 (530)
359 TIGR00955 3a01204 The Eye Pigm 99.8 9.9E-19 2.2E-23 202.8 8.3 163 24-201 37-254 (617)
360 KOG0059 Lipid exporter ABCA1 a 99.7 1.8E-18 4E-23 207.4 8.8 178 8-202 563-786 (885)
361 COG4133 CcmA ABC-type transpor 99.7 8.1E-18 1.7E-22 163.0 8.7 150 9-174 2-191 (209)
362 PTZ00243 ABC transporter; Prov 99.7 5.3E-18 1.2E-22 213.3 9.7 163 26-204 674-871 (1560)
363 PLN03140 ABC transporter G fam 99.7 1.9E-18 4.2E-23 215.2 5.1 164 25-201 178-425 (1470)
364 TIGR00956 3a01205 Pleiotropic 99.7 4.3E-18 9.2E-23 212.4 7.8 168 25-201 74-298 (1394)
365 KOG0054 Multidrug resistance-a 99.7 2.1E-17 4.6E-22 200.1 11.8 179 9-204 1138-1363(1381)
366 KOG0927 Predicted transporter 99.7 1.2E-17 2.6E-22 182.6 7.4 172 7-197 387-590 (614)
367 KOG0061 Transporter, ABC super 99.7 3.2E-17 6.9E-22 189.3 11.0 176 9-201 25-258 (613)
368 cd03279 ABC_sbcCD SbcCD and ot 99.7 3.1E-17 6.7E-22 165.7 9.6 162 9-188 5-208 (213)
369 COG4778 PhnL ABC-type phosphon 99.7 2.6E-17 5.6E-22 156.7 6.6 164 8-184 3-223 (235)
370 COG4615 PvdE ABC-type sideroph 99.7 1.1E-16 2.4E-21 169.2 11.4 166 9-196 322-530 (546)
371 cd03278 ABC_SMC_barmotin Barmo 99.7 4E-17 8.7E-22 163.2 7.7 143 29-188 14-190 (197)
372 COG4136 ABC-type uncharacteriz 99.7 8E-17 1.7E-21 150.6 8.7 154 9-177 2-199 (213)
373 COG5265 ATM1 ABC-type transpor 99.7 6.1E-17 1.3E-21 172.7 8.3 177 9-204 262-487 (497)
374 KOG0054 Multidrug resistance-a 99.7 1.9E-16 4.2E-21 191.9 11.6 182 7-203 516-731 (1381)
375 KOG2355 Predicted ABC-type tra 99.7 1.8E-16 3.8E-21 155.2 8.7 176 8-199 12-233 (291)
376 COG4170 SapD ABC-type antimicr 99.6 1.6E-16 3.6E-21 155.7 5.9 187 7-203 1-248 (330)
377 cd03271 ABC_UvrA_II The excisi 99.6 8.4E-16 1.8E-20 159.8 10.0 83 108-198 168-261 (261)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.6 2.1E-15 4.6E-20 154.8 8.2 71 108-187 157-234 (243)
379 cd03240 ABC_Rad50 The catalyti 99.6 1.6E-15 3.4E-20 152.5 6.5 139 42-191 24-200 (204)
380 KOG0927 Predicted transporter 99.6 7.3E-15 1.6E-19 161.0 9.3 174 9-201 75-307 (614)
381 cd03274 ABC_SMC4_euk Eukaryoti 99.6 6.2E-15 1.3E-19 149.1 8.0 71 109-188 127-204 (212)
382 KOG0066 eIF2-interacting prote 99.6 6.7E-15 1.5E-19 156.9 8.5 164 7-188 584-776 (807)
383 cd03280 ABC_MutS2 MutS2 homolo 99.5 1.3E-14 2.7E-19 145.3 6.7 139 30-195 19-171 (200)
384 cd03273 ABC_SMC2_euk Eukaryoti 99.5 2.7E-14 5.9E-19 147.8 9.0 69 108-185 165-240 (251)
385 KOG0065 Pleiotropic drug resis 99.5 8.7E-15 1.9E-19 174.2 5.6 183 11-212 789-1028(1391)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.5 1.9E-14 4.1E-19 148.8 7.3 75 109-191 155-236 (247)
387 COG1245 Predicted ATPase, RNas 99.5 2.4E-14 5.3E-19 154.1 7.5 160 9-185 342-528 (591)
388 KOG0062 ATPase component of AB 99.5 2.6E-14 5.5E-19 156.0 6.8 174 9-198 80-280 (582)
389 TIGR00630 uvra excinuclease AB 99.5 1.5E-13 3.2E-18 164.1 11.4 86 108-201 827-923 (924)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.5 9.5E-14 2.1E-18 139.0 8.3 74 108-188 108-190 (198)
391 PF00005 ABC_tran: ABC transpo 99.5 1.4E-14 3.1E-19 135.2 1.8 101 28-135 1-137 (137)
392 COG1129 MglA ABC-type sugar tr 99.5 1.1E-13 2.4E-18 153.5 8.7 172 8-200 262-487 (500)
393 PRK00635 excinuclease ABC subu 99.4 1E-13 2.3E-18 172.4 8.8 86 109-202 809-905 (1809)
394 cd03243 ABC_MutS_homologs The 99.4 3E-13 6.5E-18 135.5 8.5 144 38-198 27-174 (202)
395 PRK00349 uvrA excinuclease ABC 99.4 3E-13 6.6E-18 161.7 9.3 88 108-203 829-927 (943)
396 cd03227 ABC_Class2 ABC-type Cl 99.4 2E-13 4.4E-18 132.2 4.4 126 40-186 21-153 (162)
397 cd03239 ABC_SMC_head The struc 99.4 4.1E-13 8.8E-18 132.3 6.1 135 42-188 24-172 (178)
398 COG4178 ABC-type uncharacteriz 99.4 2.6E-12 5.7E-17 145.3 12.8 154 8-177 391-578 (604)
399 COG1245 Predicted ATPase, RNas 99.4 4.3E-13 9.4E-18 144.5 4.5 137 38-185 98-285 (591)
400 KOG0062 ATPase component of AB 99.3 7.6E-13 1.6E-17 144.6 6.2 170 7-194 360-559 (582)
401 cd03283 ABC_MutS-like MutS-lik 99.3 1.4E-12 3E-17 130.8 6.4 132 26-177 15-152 (199)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.3 2.4E-12 5.2E-17 130.4 6.2 76 109-191 126-211 (213)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.3 1.2E-12 2.7E-17 133.3 3.7 150 26-197 18-175 (222)
404 cd03282 ABC_MSH4_euk MutS4 hom 99.2 5.4E-12 1.2E-16 127.0 4.9 135 26-179 17-157 (204)
405 COG2401 ABC-type ATPase fused 99.2 1.5E-11 3.4E-16 131.3 6.3 156 25-188 396-584 (593)
406 cd03284 ABC_MutS1 MutS1 homolo 99.2 2E-11 4.4E-16 123.9 6.5 150 27-200 20-178 (216)
407 cd01851 GBP Guanylate-binding 99.2 5.7E-11 1.2E-15 121.2 7.9 134 37-175 4-146 (224)
408 cd03281 ABC_MSH5_euk MutS5 hom 99.2 5.4E-11 1.2E-15 120.5 7.5 132 28-178 19-159 (213)
409 smart00534 MUTSac ATPase domai 99.1 3.3E-11 7.1E-16 119.3 5.2 123 42-181 1-129 (185)
410 COG3845 ABC-type uncharacteriz 99.1 2.6E-10 5.6E-15 125.0 8.4 178 7-200 255-489 (501)
411 KOG0066 eIF2-interacting prote 99.1 8E-11 1.7E-15 126.2 3.7 168 9-193 264-488 (807)
412 TIGR02858 spore_III_AA stage I 99.0 2.9E-10 6.3E-15 119.0 7.2 135 41-202 112-268 (270)
413 cd03287 ABC_MSH3_euk MutS3 hom 99.0 2.9E-10 6.2E-15 115.9 6.9 134 26-177 19-158 (222)
414 KOG0060 Long-chain acyl-CoA tr 99.0 2.5E-09 5.5E-14 118.8 12.4 153 8-177 432-631 (659)
415 cd03241 ABC_RecN RecN ATPase i 99.0 9.1E-10 2E-14 115.8 6.8 70 110-188 171-247 (276)
416 COG0178 UvrA Excinuclease ATPa 98.9 3.4E-09 7.3E-14 121.7 10.0 85 111-203 824-919 (935)
417 KOG0064 Peroxisomal long-chain 98.9 3.9E-09 8.5E-14 115.9 9.9 151 9-177 481-673 (728)
418 PRK07721 fliI flagellum-specif 98.9 7E-09 1.5E-13 115.4 10.2 153 26-200 147-340 (438)
419 TIGR01069 mutS2 MutS2 family p 98.9 1.8E-09 3.9E-14 127.9 5.3 122 39-176 321-448 (771)
420 cd03286 ABC_MSH6_euk MutS6 hom 98.8 2.9E-09 6.4E-14 108.2 5.3 136 26-179 18-159 (218)
421 PRK00349 uvrA excinuclease ABC 98.8 5.2E-09 1.1E-13 125.8 4.8 87 108-203 488-585 (943)
422 KOG0063 RNAse L inhibitor, ABC 98.7 3.2E-09 6.9E-14 114.2 2.2 146 27-184 355-528 (592)
423 PRK00409 recombination and DNA 98.7 4.6E-09 1E-13 124.8 3.7 128 38-181 325-458 (782)
424 TIGR00630 uvra excinuclease AB 98.7 6.8E-09 1.5E-13 124.6 4.9 87 107-202 485-582 (924)
425 cd03242 ABC_RecF RecF is a rec 98.7 7.9E-09 1.7E-13 108.4 4.8 69 112-192 186-269 (270)
426 KOG0065 Pleiotropic drug resis 98.7 1.2E-08 2.5E-13 122.8 5.8 167 25-202 128-350 (1391)
427 PF02463 SMC_N: RecF/RecN/SMC 98.7 7.4E-08 1.6E-12 97.4 8.9 61 109-177 136-203 (220)
428 COG3910 Predicted ATPase [Gene 98.6 1.1E-07 2.3E-12 93.0 8.2 43 126-175 148-190 (233)
429 PRK00635 excinuclease ABC subu 98.5 7.4E-08 1.6E-12 121.2 5.1 87 108-202 475-571 (1809)
430 PRK08533 flagellar accessory p 98.5 2.6E-07 5.6E-12 94.8 7.5 29 34-64 20-49 (230)
431 PTZ00132 GTP-binding nuclear p 98.5 3.1E-07 6.7E-12 92.6 7.6 41 114-160 157-205 (215)
432 TIGR02788 VirB11 P-type DNA tr 98.5 1.3E-07 2.8E-12 101.2 4.6 146 38-215 142-292 (308)
433 PRK13695 putative NTPase; Prov 98.4 2.9E-07 6.3E-12 90.0 6.5 134 42-195 2-156 (174)
434 KOG0063 RNAse L inhibitor, ABC 98.4 1.1E-07 2.4E-12 102.6 3.6 136 38-186 98-286 (592)
435 PF13304 AAA_21: AAA domain; P 98.3 6.1E-07 1.3E-11 89.5 4.5 58 111-175 238-301 (303)
436 TIGR03238 dnd_assoc_3 dnd syst 98.3 5.7E-07 1.2E-11 99.9 3.9 42 24-73 18-59 (504)
437 TIGR01026 fliI_yscN ATPase Fli 98.2 4.4E-06 9.5E-11 93.3 10.2 151 26-199 152-344 (440)
438 cd01120 RecA-like_NTPases RecA 98.2 2.2E-06 4.7E-11 80.9 6.2 124 42-176 1-140 (165)
439 cd01124 KaiC KaiC is a circadi 98.2 1.4E-06 3.1E-11 85.3 4.8 46 126-175 97-142 (187)
440 cd00820 PEPCK_HprK Phosphoenol 98.1 2.1E-06 4.4E-11 77.6 3.4 34 26-61 3-36 (107)
441 PRK06067 flagellar accessory p 98.1 9.4E-06 2E-10 83.2 8.0 145 32-193 19-184 (234)
442 PRK06793 fliI flagellum-specif 98.0 8.6E-06 1.9E-10 90.4 7.6 160 9-197 130-305 (432)
443 PRK05399 DNA mismatch repair p 98.0 6.5E-06 1.4E-10 99.3 6.4 130 27-177 597-734 (854)
444 smart00382 AAA ATPases associa 98.0 4.7E-05 1E-09 68.8 9.7 25 40-64 2-26 (148)
445 TIGR00634 recN DNA repair prot 97.9 4.3E-06 9.3E-11 96.7 2.8 72 108-188 439-517 (563)
446 PF00488 MutS_V: MutS domain V 97.9 1.1E-05 2.4E-10 83.2 4.7 134 27-177 32-170 (235)
447 cd01128 rho_factor Transcripti 97.8 1.9E-05 4E-10 82.1 4.4 67 114-192 142-211 (249)
448 cd01131 PilT Pilus retraction 97.8 3.3E-05 7.3E-10 77.4 6.1 23 42-64 3-25 (198)
449 TIGR00618 sbcc exonuclease Sbc 97.8 1.8E-05 3.8E-10 97.9 4.8 74 108-188 949-1035(1042)
450 PRK10869 recombination and rep 97.8 1.5E-05 3.2E-10 91.9 3.3 72 108-188 429-507 (553)
451 cd01130 VirB11-like_ATPase Typ 97.7 2.2E-05 4.8E-10 77.7 3.9 37 32-74 19-55 (186)
452 PHA02562 46 endonuclease subun 97.7 3.1E-05 6.7E-10 89.3 3.9 74 109-192 468-555 (562)
453 PRK10246 exonuclease subunit S 97.6 3E-05 6.5E-10 95.8 3.5 72 107-185 947-1029(1047)
454 PF13555 AAA_29: P-loop contai 97.6 4.6E-05 1E-09 62.0 3.4 26 39-64 22-47 (62)
455 PRK10078 ribose 1,5-bisphospho 97.6 4.3E-05 9.2E-10 75.6 3.7 25 40-64 2-26 (186)
456 cd01125 repA Hexameric Replica 97.6 4.6E-05 1E-09 78.4 4.1 48 126-174 113-160 (239)
457 PRK09825 idnK D-gluconate kina 97.6 4.3E-05 9.3E-10 75.3 3.6 26 39-64 2-27 (176)
458 TIGR00235 udk uridine kinase. 97.6 3.7E-05 8E-10 77.4 3.1 27 38-64 4-30 (207)
459 PRK13830 conjugal transfer pro 97.6 0.00014 3E-09 87.7 8.0 45 126-177 654-699 (818)
460 PRK06002 fliI flagellum-specif 97.5 0.00011 2.5E-09 81.8 6.0 57 8-73 138-194 (450)
461 PRK00300 gmk guanylate kinase; 97.5 7.8E-05 1.7E-09 74.5 4.1 27 38-64 3-29 (205)
462 PRK09270 nucleoside triphospha 97.5 6.9E-05 1.5E-09 76.7 3.5 33 38-74 31-63 (229)
463 TIGR01070 mutS1 DNA mismatch r 97.5 0.00012 2.5E-09 88.3 5.5 132 28-177 583-719 (840)
464 cd00009 AAA The AAA+ (ATPases 97.5 0.00031 6.7E-09 64.2 7.0 27 38-64 17-43 (151)
465 PRK10416 signal recognition pa 97.4 0.00024 5.3E-09 76.4 6.8 33 38-74 112-144 (318)
466 COG1159 Era GTPase [General fu 97.4 0.00022 4.7E-09 74.8 6.1 123 39-177 5-128 (298)
467 PF09818 ABC_ATPase: Predicted 97.4 0.00035 7.5E-09 77.0 7.4 152 32-188 239-413 (448)
468 TIGR00606 rad50 rad50. This fa 97.4 9.8E-05 2.1E-09 93.4 3.5 67 109-181 1199-1278(1311)
469 PRK03918 chromosome segregatio 97.4 9.8E-05 2.1E-09 89.8 3.4 72 108-187 787-867 (880)
470 TIGR01420 pilT_fam pilus retra 97.4 0.00028 6.1E-09 76.7 6.6 27 38-64 120-146 (343)
471 PRK00098 GTPase RsgA; Reviewed 97.3 0.0002 4.4E-09 76.4 5.0 34 38-75 162-195 (298)
472 TIGR00554 panK_bact pantothena 97.3 0.00012 2.6E-09 77.6 3.1 24 41-64 63-86 (290)
473 PRK01156 chromosome segregatio 97.3 0.00014 3E-09 88.8 3.8 74 108-188 800-884 (895)
474 TIGR03263 guanyl_kin guanylate 97.3 0.00017 3.6E-09 70.5 3.5 25 40-64 1-25 (180)
475 cd04155 Arl3 Arl3 subfamily. 97.3 0.0002 4.3E-09 68.9 3.9 32 42-73 16-47 (173)
476 PRK07594 type III secretion sy 97.3 0.00052 1.1E-08 76.5 7.7 56 9-73 129-184 (433)
477 TIGR02322 phosphon_PhnN phosph 97.3 0.00018 4E-09 70.3 3.7 25 40-64 1-25 (179)
478 TIGR03015 pepcterm_ATPase puta 97.3 0.0003 6.5E-09 73.1 5.4 38 25-64 29-67 (269)
479 cd01852 AIG1 AIG1 (avrRpt2-ind 97.3 0.00033 7.2E-09 69.7 5.5 23 42-64 2-24 (196)
480 PRK00454 engB GTP-binding prot 97.3 0.00076 1.7E-08 66.3 7.9 22 42-63 26-47 (196)
481 COG3044 Predicted ATPase of th 97.3 0.0006 1.3E-08 73.9 7.3 148 32-188 237-408 (554)
482 TIGR02655 circ_KaiC circadian 97.3 0.00023 4.9E-09 81.0 4.4 29 34-64 17-47 (484)
483 PF01926 MMR_HSR1: 50S ribosom 97.3 0.00025 5.3E-09 64.2 3.8 60 43-105 2-61 (116)
484 cd02025 PanK Pantothenate kina 97.2 0.00015 3.3E-09 73.9 2.3 23 42-64 1-23 (220)
485 PF04548 AIG1: AIG1 family; I 97.2 0.00051 1.1E-08 69.6 6.0 116 43-172 3-126 (212)
486 cd01876 YihA_EngB The YihA (En 97.2 0.00027 5.9E-09 66.5 3.4 28 43-74 2-31 (170)
487 cd02023 UMPK Uridine monophosp 97.2 0.0002 4.3E-09 71.4 2.6 23 42-64 1-23 (198)
488 TIGR00767 rho transcription te 97.1 0.00047 1E-08 75.8 5.1 52 9-64 130-192 (415)
489 PRK09862 putative ATP-dependen 97.1 0.00037 8.1E-09 79.2 4.5 54 12-74 187-240 (506)
490 TIGR03881 KaiC_arch_4 KaiC dom 97.1 0.00092 2E-08 68.1 7.0 28 32-61 14-41 (229)
491 TIGR03880 KaiC_arch_3 KaiC dom 97.1 0.00085 1.8E-08 68.2 6.6 27 33-61 11-37 (224)
492 cd02026 PRK Phosphoribulokinas 97.1 0.00032 7E-09 73.9 3.6 23 42-64 1-23 (273)
493 PRK13898 type IV secretion sys 97.1 0.00094 2E-08 80.6 7.7 56 126-188 644-700 (800)
494 PRK09099 type III secretion sy 97.1 0.00096 2.1E-08 74.6 7.2 41 26-73 152-192 (441)
495 TIGR03498 FliI_clade3 flagella 97.1 0.00088 1.9E-08 74.5 6.8 37 31-73 133-169 (418)
496 PRK07196 fliI flagellum-specif 97.1 0.00033 7.2E-09 78.0 3.4 36 26-64 144-179 (434)
497 PRK15494 era GTPase Era; Provi 97.1 0.00052 1.1E-08 74.6 4.7 53 9-65 18-77 (339)
498 PRK05480 uridine/cytidine kina 97.1 0.00039 8.4E-09 69.9 3.4 27 38-64 4-30 (209)
499 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00069 1.5E-08 73.2 5.4 25 40-64 162-186 (325)
500 TIGR00416 sms DNA repair prote 97.0 0.00064 1.4E-08 76.7 4.9 30 33-64 89-118 (454)
No 1
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=100.00 E-value=1.2e-139 Score=1117.96 Aligned_cols=652 Identities=64% Similarity=1.010 Sum_probs=628.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecccc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA 87 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~ 87 (671)
+.+|++|..+.|+..++..+.+.+.+..||.+|++|+|+||++||||||||+|+|+.|++|+...||.|+|+|||+++..
T Consensus 5 ~stQlIDe~keFn~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~ 84 (772)
T KOG2203|consen 5 CSTQLIDEEKEFNVSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCA 84 (772)
T ss_pred ccceeeccccccchhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhc
Confidence 57999999999987678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhccCCCcccccccchHHHHHHHHHHHHHHHHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCC--cE
Q 005892 88 GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK--TT 165 (671)
Q Consensus 88 ~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g--~T 165 (671)
+.++.+++||++|+++++|+++ ..|+||.++||.|+++|+|+|+|++++|.++++|++++++|++++++|+.+++ ++
T Consensus 85 ~i~p~i~vmDvEGTDGrERGED-qdFErksALFaiavSevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~rk~k~~ 163 (772)
T KOG2203|consen 85 GIEPCILVMDVEGTDGRERGED-QDFERKSALFAIAVSEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPRKNKTL 163 (772)
T ss_pred CCCCceEEEecccCCccccccc-ccHHHHhHHHHHhhhheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCCCCceE
Confidence 9999999999999999999988 99999999999999999999999999999999999999999999999998766 99
Q ss_pred EEEEecCC-CcccccccchhhhhcCCeEEEecCcccccCCccccchhcccccccccchhhHHHHHHHHHHhhcccccc-c
Q 005892 166 LMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHS-V 243 (671)
Q Consensus 166 Il~VtHDl-~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~~l~~~f~~~~~~lp~~~~~~~~f~~~v~~L~~~f~~~-~ 243 (671)
++||++|. ..++.....-+++.+..+||...++|+.+++..+.+||++.|.+|+|+.+++++|.++|..||++|.++ .
T Consensus 164 LlFVIRD~~~~TplenLe~~l~~dlqkIW~sl~KPe~~e~s~l~DfFdv~~v~Ls~~~~kedqF~e~V~~LrqrFv~s~~ 243 (772)
T KOG2203|consen 164 LLFVIRDKTGVTPLENLEDVLREDLQKIWDSLSKPEGHENSPLNDFFDVEFVGLSHKELKEDQFKEQVASLRQRFVHSGI 243 (772)
T ss_pred EEEEEecccCCCchHHhhHHHHHHHHHHHHhcCCcccccCCchhhhhceeeeecchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 558888888899999999999999999999999999999999999999999999999999999999987 7
Q ss_pred CCCCCCCCCCCccccCCccchhhHHHHHHHhcCCCCCchHHHHHHHhhhHHHHHHHHhhhhhhhhHHHHHHHHhcCCcch
Q 005892 244 APGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISS 323 (671)
Q Consensus 244 ~~~~~~~~~~~~ip~~g~~~~~~~~w~~I~~n~dLdlp~q~~~~a~~rc~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (671)
.|++++++||++||++||++|+++||++|++|+|||||+||+|||+|||+||++|+|+.|.+++.|.++.++++.|++++
T Consensus 244 s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g~l~s~ 323 (772)
T KOG2203|consen 244 SPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQGNLVSG 323 (772)
T ss_pred CCCccccccCCcccccchhhhHHHHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcCCCccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhcccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHH
Q 005892 324 FGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAA 403 (671)
Q Consensus 324 ~~~~~~~~~~~~l~~yd~~a~~y~~~v~~~kr~~L~~~~~~~~~~~~~~~l~~l~~~~~~~f~~~l~~~~~~~~~f~~~~ 403 (671)
||+++.+++++||++||++|+||+.+||++||++|..++++.++|.|+.+|+|||+.+++.||..+++.++.+.+|++++
T Consensus 324 l~~kL~~i~e~~lseYD~qAs~y~~~V~~~KrqqL~~kl~s~v~~~fq~~L~~L~~~lle~fk~~~~~~~~~~~gF~es~ 403 (772)
T KOG2203|consen 324 LGKKLSSILEECLSEYDEQASRYDEGVYSEKRQQLNEKLLSHVYPTFQDVLGHLREGLLESFKLAFEKALKATEGFSESV 403 (772)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhcCCCCCh
Q 005892 404 HHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNET 483 (671)
Q Consensus 404 ~~~~~~~~~~f~~~~~~~~~~~~~w~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~k~~~~~~~~~v~~~l~~~~~~~ 483 (671)
..+.++|+.+|+++|+.+.++++.|++++++++|.++|++|+.++|..+|++++..|++++..++++||+.+|++++.++
T Consensus 404 ~~~~~~~~~~fde~~E~~~~~~~~wd~ski~~Kls~diea~i~~lr~akLke~~~~~e~~l~~else~Ve~ll~~~s~ev 483 (772)
T KOG2203|consen 404 ADGKQSCEKKFDEECETAKIEQALWDTSKIREKLSRDIEAHISSLRTAKLKEKTGLYEKKLVPELSEPVEALLDGASKEV 483 (772)
T ss_pred HHHHHHHHHHHHhhhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhhhHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCCCCCC
Q 005892 484 WPAIRKLLRCETESAISGFSDALYGFD--MDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSM 561 (671)
Q Consensus 484 W~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~rF~~~FryD~~~~ 561 (671)
||.|++.|++..+.++..+++...||. +++++++++++.||.+||..++.|+++++++|+++||+||+++||||.+||
T Consensus 484 W~ti~n~f~~e~n~av~~~~~~~~~f~~~~de~t~~~m~~nlk~~a~~~~etk~~ee~~~il~rmrdRFe~vFr~Dsd~m 563 (772)
T KOG2203|consen 484 WDTIRNLFRRETNTAVYGLSNAVYGFEIGLDEETRDKMVKNLKNYAWGTVETKAKEEADRILMRMRDRFETVFRYDSDGM 563 (772)
T ss_pred HHHHHHHHHhccchhHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 999999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccchHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhhhhccCCCCCcccccccCCCCCCCCCccCCCCCCCc
Q 005892 562 PRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKT 641 (671)
Q Consensus 562 PR~W~~~~di~~~f~~Ar~~al~ll~~~~~~rl~~~~d~i~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~w~~~~~~~~ 641 (671)
||+|++++|||+||+.||++||+||+|||.||++|+ |+.+|+.++.|.+++.+++ +.+.||++++ .+++|
T Consensus 564 PrlWk~kedI~~~~r~ar~~aL~llsVla~irlsDn---ie~~l~v~l~~~e~~~~s~--i~t~d~lass-----~~~~t 633 (772)
T KOG2203|consen 564 PRLWKGKEDIDAITRVARSAALKLLSVLAVIRLSDN---IEKTLTVALADEESNETSS--IYTNDPLASS-----ASFAT 633 (772)
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHHhheecCC---ccccCccccccCCCCCCCc--ccccCccccC-----Cccce
Confidence 999999999999999999999999999999999954 4555666888876544443 6678899866 88999
Q ss_pred ccCHHHHHHHHHHHHhHHhHHHHHHHHhcC
Q 005892 642 LITPVQCKSLWRQFKSETEYSVTQAISAQA 671 (671)
Q Consensus 642 ll~~~~~~~~~~~f~~e~~~~~~qa~~~q~ 671 (671)
||||+||++||+||| +++|+|+||+++|+
T Consensus 634 ilt~vq~ksi~~qFk-rt~~~v~~d~k~s~ 662 (772)
T KOG2203|consen 634 ILTPVQCKSIWRQFK-RTEYTVTQDIKRSE 662 (772)
T ss_pred eccHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence 999999999999999 99999999999984
No 2
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=100.00 E-value=3.8e-124 Score=1087.46 Aligned_cols=620 Identities=49% Similarity=0.796 Sum_probs=583.1
Q ss_pred EcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCC---CcchhhhhccCCCcccccccchHHHHHHHHHHH
Q 005892 46 MGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 46 lGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~---~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAl 122 (671)
+||++||||||||.|||+.|+||+. .||.|||+|+|+...... .+.++++|++|+++++|+++.. |+||..+||+
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~-~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~-fe~~~alf~l 78 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDE-SGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQD-FERKSALFAL 78 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCcccccc-ccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccc-hHHHHHHHHH
Confidence 6999999999999999999999999 899999999999876553 5788899999999999997655 9999999999
Q ss_pred HHHHHHhccccccCCChhhhhChhHHHHHHHHHHHhh-----CCCCcEEEEEecCCCc-ccccccchhhhhcCCeEEEec
Q 005892 123 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF-----SPRKTTLMFVIRDKTR-TPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 123 AL~evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~-----~~~g~TIl~VtHDl~~-~~~~~~~~~ll~~~GkI~~~g 196 (671)
|+++|||+|+|.+++|.++++|++++++|++++.+|+ ..++++++||+||+.. ++.......++.+..+||...
T Consensus 79 a~s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~~tp~e~l~~~l~~dl~~iW~~i 158 (742)
T PF05879_consen 79 AVSDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTGVTPLENLEETLREDLEKIWDSI 158 (742)
T ss_pred HhhhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 4578999999999965 777777888888889999999
Q ss_pred CcccccCCccccchhcccccccccchhhHHHHHHHHHHhhcccccc--cCCCCCCCCCCCccccCCccchhhHHHHHHHh
Q 005892 197 PKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHS--VAPGGLAGDRRGVVPASGFSFSAHEIWKVIKE 274 (671)
Q Consensus 197 ~~~e~~~~~~l~~~f~~~~~~lp~~~~~~~~f~~~v~~L~~~f~~~--~~~~~~~~~~~~~ip~~g~~~~~~~~w~~I~~ 274 (671)
++|+.+++..+.++|++.|++|||+.+++++|.++|..||++|.++ ..++.+++.||+.||++||++|+++||++|++
T Consensus 159 ~kP~~~~~~~~~d~Fd~~f~~LpH~~~~~e~F~~~v~~Lr~rf~~~~~~~~~~~~~~y~~~iP~dG~~~y~~~iW~~I~~ 238 (742)
T PF05879_consen 159 SKPEGFENSSLSDFFDLEFTALPHKILQPEKFNEDVAKLRQRFVDSKNIEDGLFKPEYHRRIPADGFSMYAENIWEQIKN 238 (742)
T ss_pred cCcccccCCChhheeeeeeeccCchhhhHHHHHHHHHHHHHHHhccCcCCCCCCchhhcCCCChHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987 34545688999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHhhhHHHHHHHHhhhhhh-----hhHHHHHHHHhcCCcchHHHHHHHHHHHHhhchhhhhcccchH
Q 005892 275 NKDLDLPAHKVMVATVRCEEIANEKYSSFAAN-----EEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEG 349 (671)
Q Consensus 275 n~dLdlp~q~~~~a~~rc~ei~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yd~~a~~y~~~ 349 (671)
|+|||||+||+|||+|||+||++++|..|.++ +.|..+.+..+.+.+++||++|.+++++||++||.+|+||+++
T Consensus 239 nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~ 318 (742)
T PF05879_consen 239 NKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSELEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKS 318 (742)
T ss_pred CccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999987 5666666677777899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHhHhHHHHHHHHHHHhhhhhhccCCCC
Q 005892 350 VRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWD 429 (671)
Q Consensus 350 v~~~kr~~L~~~~~~~~~~~~~~~l~~l~~~~~~~f~~~l~~~~~~~~~f~~~~~~~~~~~~~~f~~~~~~~~~~~~~w~ 429 (671)
||++||++|+++|...++|+|+.||+|||++++++|++.+.+.++++.+|+..++.|.+.++.+|+++|+++.++++.|+
T Consensus 319 V~~~Kr~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~lk~~~~Fa~~v~~~~~~~~~~F~~~a~~~~i~~~~ws 398 (742)
T PF05879_consen 319 VYQEKRQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSALKSGEDFAEAVRECKQSALEEFEESAEDLVIEGADWS 398 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhcCCCCChhHHHHHHHHHHHHHHHhhhhhhccC
Q 005892 430 M-SKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYG 508 (671)
Q Consensus 430 ~-~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~k~~~~~~~~~v~~~l~~~~~~~W~~i~~~~~~~~~~~~~~~~~~~~~ 508 (671)
+ +++++.|.++|++++.++|.+++++|+++++|++++.|+++|..+|++|+++||++|++.|.+++++++++|...+.|
T Consensus 399 ~se~~~~~L~~dLd~~~~~lR~~el~~l~~~~eK~l~~~l~e~v~~~l~~~~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~ 478 (742)
T PF05879_consen 399 YSEEEREKLEEDLDEHSSKLRKEELNELVARIEKKLKSELKEPVESLLENPSPDMWDRIRKLFESATESAVSKFSDRLKG 478 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHhhhhcCCCCCCCCcccCCccchHHHHHHHHHHHHHHH
Q 005892 509 FDMDEETKEKMLASLENYAKGVVEAKAREES--GRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLL 586 (671)
Q Consensus 509 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~~l~~rF~~~FryD~~~~PR~W~~~~di~~~f~~Ar~~al~ll 586 (671)
|+++++++++++++||.+||.+|+.+|||+. ++|+++||+||+++||||++|+||+|+|+|||++||++||++||+||
T Consensus 479 f~~s~~e~~~~~~~lr~~aw~~l~~ki~e~~~~~~ll~~LkdRFe~~FryDe~g~PRvW~~eddI~~if~~ARe~AL~LL 558 (742)
T PF05879_consen 479 FGLSEEENEKALKKLRRKAWSVLREKIREEASEDNLLIRLKDRFEDKFRYDEDGVPRVWKPEDDIDAIFRKAREHALKLL 558 (742)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhCcCCCCCCCCCCCHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCccchhhhhhhhhccCCCCCcccccccCCCCCCCCCccCCCCCCCcccCHHHHHHHHHHHHhHHhHHHHHH
Q 005892 587 SVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQA 666 (671)
Q Consensus 587 ~~~~~~rl~~~~d~i~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~w~~~~~~~~ll~~~~~~~~~~~f~~e~~~~~~qa 666 (671)
|+||++||+++++++|+++.....+......++++.++.||+++++|+++++++|||||+||++||+||+++|+++|+||
T Consensus 559 ~vLa~iRL~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~l~~~~~~~~~~~~~lls~~~~~~i~~~Fk~~~~~~~~eA 638 (742)
T PF05879_consen 559 PVLAIIRLSDGSEIIPDVDISSLEPASSSPGSSESISAIDPLDSSEWEEVDEFATLLSESQCKSIWRQFKREIDYTYVEA 638 (742)
T ss_pred HHHHhhhccCCcccCcccchhhccccCcCcccccccccccccccccccccccceEeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865554443322222234556789999999999999999999999999999999999999999
Q ss_pred H
Q 005892 667 I 667 (671)
Q Consensus 667 ~ 667 (671)
-
T Consensus 639 k 639 (742)
T PF05879_consen 639 K 639 (742)
T ss_pred H
Confidence 4
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-33 Score=273.25 Aligned_cols=180 Identities=19% Similarity=0.225 Sum_probs=145.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------- 80 (671)
++|+++|++|.|+. ..++++|++.+ .+|++++|+||||||||||||||+||. .|++|++...+.
T Consensus 1 ~mi~i~~l~K~fg~---~~VLkgi~l~v--~~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 1 MMIEIKNLSKSFGD---KEVLKGISLSV--EKGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred CeEEEEeeeEEeCC---eEEecCcceeE--cCCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhh
Confidence 47999999999965 48999999999 999999999999999999999999999 899997543321
Q ss_pred ---------eEeccccCCCcchhhhhc--------------------------cCCCccc--ccccchHHHHHHHHHHHH
Q 005892 81 ---------IWMARCAGIEPCTLIMDL--------------------------EGTDGRE--RGEDDTAFEKQSALFALA 123 (671)
Q Consensus 81 ---------i~~~~~~~~~~~~~vld~--------------------------~g~~~~~--r~~~~~~~qrQrv~iAlA 123 (671)
..++.. ...+...++++ .|+.... .....+++|+|||+||||
T Consensus 72 ~~~~R~~vGmVFQ~f-nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 72 ILKLRRKVGMVFQQF-NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHHHhcCeecccc-cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 111111 11222333332 2222111 122346779999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
|+ +++|+|||||+|||+- ..+|++++++|+++ |+|+|+|||+|.++...+|+++.+++ |+|+..|+|++
T Consensus 151 LaM~P~vmLFDEPTSALDPEl------v~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~-G~iie~g~p~~ 222 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPEL------VGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQ-GKIIEEGPPEE 222 (240)
T ss_pred HcCCCCEEeecCCcccCCHHH------HHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeC-CEEEEecCHHH
Confidence 99 9999999999999998 99999999999876 99999999999999999999999988 99999999988
Q ss_pred ccCCc
Q 005892 201 AHMET 205 (671)
Q Consensus 201 ~~~~~ 205 (671)
+|.++
T Consensus 223 ~f~~p 227 (240)
T COG1126 223 FFDNP 227 (240)
T ss_pred HhcCC
Confidence 88654
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.98 E-value=7.2e-33 Score=283.69 Aligned_cols=197 Identities=18% Similarity=0.212 Sum_probs=157.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------- 80 (671)
++++++|+++.|++ ..++.+++|.+ .+|++++|+||||||||||||+|+|++ +|.+|++...+.
T Consensus 1 ~~L~~~~ls~~y~~---~~il~~ls~~i--~~G~i~~iiGpNG~GKSTLLk~l~g~l----~p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 1 MMLEVENLSFGYGG---KPILDDLSFSI--PKGEITGILGPNGSGKSTLLKCLAGLL----KPKSGEVLLDGKDIASLSP 71 (258)
T ss_pred CeeEEEEEEEEECC---eeEEecceEEe--cCCcEEEEECCCCCCHHHHHHHHhccC----CCCCCEEEECCCchhhcCH
Confidence 36999999999965 48999999999 999999999999999999999999999 899997321110
Q ss_pred -------eEeccccCCCcchhh-----------------------------hhccCCCcc--cccccchHHHHHHHHHHH
Q 005892 81 -------IWMARCAGIEPCTLI-----------------------------MDLEGTDGR--ERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 81 -------i~~~~~~~~~~~~~v-----------------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAl 122 (671)
.++...........| ++..|+... ......+++|||||.||+
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 011110000111111 222222111 112344677999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
||+ ++|+|||||+.||... +-+++++++++.+++|+|+|+|+||++.+.++||++++|.+ |+|++.|+|+
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~------Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~-G~i~a~G~p~ 224 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAH------QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKD-GKIVAQGTPE 224 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CeEEeecCcc
Confidence 999 9999999999999999 99999999999988899999999999999999999999998 9999999999
Q ss_pred cccCCccccchhccccccccc
Q 005892 200 QAHMETPLSEFFNVEVVALSS 220 (671)
Q Consensus 200 e~~~~~~l~~~f~~~~~~lp~ 220 (671)
+++....+.+.|+++...+.+
T Consensus 225 evlT~e~l~~Vygv~~~~~~~ 245 (258)
T COG1120 225 EVLTEENLREVYGVDADVIED 245 (258)
T ss_pred hhcCHHHHHHHhCCceEEEEc
Confidence 999999999999998765543
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.6e-31 Score=269.20 Aligned_cols=189 Identities=16% Similarity=0.189 Sum_probs=149.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------ 80 (671)
+++|+++|+++.|+.. .++.+|++.+ .+|++++|+||||||||||+|+|.|++ +|++|++...+.
T Consensus 2 ~~~i~v~nl~v~y~~~---~vl~~i~l~v--~~G~~~~iiGPNGaGKSTLlK~iLGll----~p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 2 MPMIEVENLTVSYGNR---PVLEDISLSV--EKGEITALIGPNGAGKSTLLKAILGLL----KPSSGEIKIFGKPVRKRR 72 (254)
T ss_pred CcEEEEeeeEEEECCE---eeeeccEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----cCCcceEEEccccccccc
Confidence 5689999999999653 5999999999 999999999999999999999999999 899998542211
Q ss_pred -----eEeccccC--CCcchhhhhcc-----------------------------CCCcc--cccccchHHHHHHHHHHH
Q 005892 81 -----IWMARCAG--IEPCTLIMDLE-----------------------------GTDGR--ERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 81 -----i~~~~~~~--~~~~~~vld~~-----------------------------g~~~~--~r~~~~~~~qrQrv~iAl 122 (671)
.+++.... ......|.|+. |+... ......+++|+|||+||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR 152 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLAR 152 (254)
T ss_pred cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHH
Confidence 01111110 11122233332 22111 111234677999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
||+ ++|+||||++|+|+.+ ...++++|.+++++ |+|||+||||++.+...+|+++++.. ++...|+++
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~------~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~--~~~~~G~~~ 223 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAG------QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNR--HLIASGPPE 223 (254)
T ss_pred HhccCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcC--eeEeccChh
Confidence 999 9999999999999999 99999999999988 99999999999999988888887764 999999999
Q ss_pred cccCCccccchhcc
Q 005892 200 QAHMETPLSEFFNV 213 (671)
Q Consensus 200 e~~~~~~l~~~f~~ 213 (671)
++++.+.+...|+.
T Consensus 224 ~~~~~~~l~~~~g~ 237 (254)
T COG1121 224 EVLTEENLEKAFGG 237 (254)
T ss_pred hccCHHHHHHHhCc
Confidence 99988777777763
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=4.4e-30 Score=256.26 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=151.2
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc--------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-------- 78 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~-------- 78 (671)
.+.|++++++++|+. +.++.++++.+ ++|++++|+||||||||||||+|.|++ +|++|++...
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V--~~Gei~~iiGgSGsGKStlLr~I~Gll----~P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDV--PRGEILAILGGSGSGKSTLLRLILGLL----RPDKGEILIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeee--cCCcEEEEECCCCcCHHHHHHHHhccC----CCCCCeEEEcCcchhccC
Confidence 468999999999965 48999999999 999999999999999999999999999 8999983211
Q ss_pred ----------CceEeccc------cCCCcchhh-------------------hhccCCCcc---cccccchHHHHHHHHH
Q 005892 79 ----------KGIWMARC------AGIEPCTLI-------------------MDLEGTDGR---ERGEDDTAFEKQSALF 120 (671)
Q Consensus 79 ----------~gi~~~~~------~~~~~~~~v-------------------ld~~g~~~~---~r~~~~~~~qrQrv~i 120 (671)
-|+.++.. ...+|..+. +...|+++. ....+.+++|++|+++
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 12222211 112222221 123344443 1223456789999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
|||++ ++|++||||+||||.+ ...+-++|++|++..|.|+++||||++.+..+||+++++.+ |+|+..|+
T Consensus 157 ARAialdPell~~DEPtsGLDPI~------a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~-gkv~~~Gt 229 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPIS------AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD-GKVIAEGT 229 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcch------HHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeC-CEEEEeCC
Confidence 99999 9999999999999999 88999999999998999999999999999999999999999 99999999
Q ss_pred cccccCC--ccccchhc
Q 005892 198 KPQAHME--TPLSEFFN 212 (671)
Q Consensus 198 ~~e~~~~--~~l~~~f~ 212 (671)
++++.+. +-+.+||+
T Consensus 230 ~~el~~sd~P~v~qf~~ 246 (263)
T COG1127 230 PEELLASDDPWVRQFFN 246 (263)
T ss_pred HHHHHhCCCHHHHHHhc
Confidence 9987643 34555554
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=2.7e-30 Score=258.88 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=147.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|++|.|++ ..++.++++.+ .+|++++++|||||||||+|++|+++. .|++|++...+
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I--~~gef~vliGpSGsGKTTtLkMINrLi----ept~G~I~i~g~~i~~~d~~ 71 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTI--EEGEFLVLIGPSGSGKTTTLKMINRLI----EPTSGEILIDGEDISDLDPV 71 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEe--cCCeEEEEECCCCCcHHHHHHHHhccc----CCCCceEEECCeecccCCHH
Confidence 5899999999975 47999999999 999999999999999999999999999 89999843111
Q ss_pred ------ceE------eccccCCCcchhhhhcc------------------CCCccc----ccccchHHHHHHHHHHHHHH
Q 005892 80 ------GIW------MARCAGIEPCTLIMDLE------------------GTDGRE----RGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ------gi~------~~~~~~~~~~~~vld~~------------------g~~~~~----r~~~~~~~qrQrv~iAlAL~ 125 (671)
|.. +.+....+|+.++.... |+++.+ .....+++|+|||.+|+||+
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 111 11111123444444333 443321 12344677999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++||+|||+++|||.. +..+-+.++++.++.|+||||||||++++..+++++++|.. |+|+..++|.+++
T Consensus 152 adP~ilLMDEPFgALDpI~------R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~-G~i~Q~~~P~~il 224 (309)
T COG1125 152 ADPPILLMDEPFGALDPIT------RKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA-GEIVQYDTPDEIL 224 (309)
T ss_pred cCCCeEeecCCccccChhh------HHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC-CeEEEeCCHHHHH
Confidence 9999999999999999 99999999999998999999999999999999999999998 9999999999988
Q ss_pred CCc
Q 005892 203 MET 205 (671)
Q Consensus 203 ~~~ 205 (671)
.++
T Consensus 225 ~~P 227 (309)
T COG1125 225 ANP 227 (309)
T ss_pred hCc
Confidence 653
No 8
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-29 Score=254.38 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=149.1
Q ss_pred cceEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-----
Q 005892 7 CCSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g----- 80 (671)
+++++++|+++.|+... ...++.+|++.+ .+||++||+|++|||||||.++|+|+. +|++|++...+.
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i--~~Ge~lgivGeSGsGKSTL~r~l~Gl~----~p~~G~I~~~G~~~~~~ 74 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEI--ERGETLGIVGESGSGKSTLARLLAGLE----KPSSGSILLDGKPLAPK 74 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEe--cCCCEEEEEcCCCCCHHHHHHHHhccc----CCCCceEEECCcccCcc
Confidence 35899999999996542 235999999999 999999999999999999999999999 899998432210
Q ss_pred -----------eEeccccC-CCc-----------------------chhhhhccCCCccc---ccccchHHHHHHHHHHH
Q 005892 81 -----------IWMARCAG-IEP-----------------------CTLIMDLEGTDGRE---RGEDDTAFEKQSALFAL 122 (671)
Q Consensus 81 -----------i~~~~~~~-~~~-----------------------~~~vld~~g~~~~~---r~~~~~~~qrQrv~iAl 122 (671)
..++...+ ..+ ..-+++..|+++.. +....+++|+||++||+
T Consensus 75 ~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIAR 154 (252)
T COG1124 75 KRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIAR 154 (252)
T ss_pred ccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHH
Confidence 01111100 000 12344455665432 23346788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
||+ ++||+||||++||... +..|++++.++.++++.|+||||||+..+...|+++++|.+ |+|++.++.+
T Consensus 155 AL~~~PklLIlDEptSaLD~si------Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 155 ALIPEPKLLILDEPTSALDVSV------QAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred HhccCCCEEEecCchhhhcHHH------HHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeC-CeEEEeechh
Confidence 999 9999999999999988 99999999999999999999999999999999999999998 9999999988
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
+++..
T Consensus 228 ~l~~~ 232 (252)
T COG1124 228 ELLSH 232 (252)
T ss_pred hhhcC
Confidence 87654
No 9
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=252.30 Aligned_cols=190 Identities=19% Similarity=0.186 Sum_probs=149.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|.+ .+.++.+|++.+ .+||+|+|+||||||||||||+|+|+. +|++|++...+
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I--~~GE~VaiIG~SGaGKSTLLR~lngl~----d~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEI--NQGEMVAIIGPSGAGKSTLLRSLNGLV----DPTSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEe--CCCcEEEEECCCCCcHHHHHHHHhccc----CCCcceEEecccchhccch
Confidence 58999999999953 258999999999 999999999999999999999999999 89999732111
Q ss_pred ----------ceEeccccC------CCc--------chhhhhccCCCc--------------------ccccccchHHHH
Q 005892 80 ----------GIWMARCAG------IEP--------CTLIMDLEGTDG--------------------RERGEDDTAFEK 115 (671)
Q Consensus 80 ----------gi~~~~~~~------~~~--------~~~vld~~g~~~--------------------~~r~~~~~~~qr 115 (671)
|..++...- ..| ..++....|+.. ..+....+++|+
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQ 153 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQ 153 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchh
Confidence 111111000 000 001111222221 123334456799
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
|||+||+||+ +++|.|||+++|||.+ .+.|++.|++++++.|.|+|+..|+++.+..+|++++-+.+ |+|
T Consensus 154 QRVaIARaL~Q~pkiILADEPvasLDp~~------a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~-G~i 226 (258)
T COG3638 154 QRVAIARALVQQPKIILADEPVASLDPES------AKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKA-GRI 226 (258)
T ss_pred HHHHHHHHHhcCCCEEecCCcccccChhh------HHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecC-CcE
Confidence 9999999999 9999999999999999 99999999999999999999999999999999999999988 999
Q ss_pred EEecCcccccCCccccchhcc
Q 005892 193 WDSVPKPQAHMETPLSEFFNV 213 (671)
Q Consensus 193 ~~~g~~~e~~~~~~l~~~f~~ 213 (671)
+.+|++.+ .+...+.+.|+.
T Consensus 227 vfDg~~~e-l~~~~~~~iYg~ 246 (258)
T COG3638 227 VFDGPASE-LTDEALDEIYGN 246 (258)
T ss_pred EEeCChhh-hhHHHHHHHhcc
Confidence 99999888 455666777764
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-29 Score=261.34 Aligned_cols=184 Identities=15% Similarity=0.171 Sum_probs=150.4
Q ss_pred eEEEEeeeEEeccc--cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~--~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
||++++++|.|... +...++++|++.+ .+|+|+||+|+||||||||+|+|+||. .|++|++...+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I--~~GeI~GIIG~SGAGKSTLiR~iN~Le----~PtsG~v~v~G~di~~l~ 74 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEI--PKGEIFGIIGYSGAGKSTLLRLINLLE----RPTSGSVFVDGQDLTALS 74 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEE--cCCcEEEEEcCCCCcHHHHHHHHhccC----CCCCceEEEcCEecccCC
Confidence 59999999999652 1356899999999 999999999999999999999999999 89999842211
Q ss_pred -----------ceEecc------ccCCCcchhhhhccCCCcccc--------------------cccchHHHHHHHHHHH
Q 005892 80 -----------GIWMAR------CAGIEPCTLIMDLEGTDGRER--------------------GEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 -----------gi~~~~------~~~~~~~~~vld~~g~~~~~r--------------------~~~~~~~qrQrv~iAl 122 (671)
|..+++ ....+|..+.+...|.+..+. ....+++|||||+|||
T Consensus 75 ~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 75 EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred hHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 111111 112345555555555433221 1234567999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
||+ ++||.||||++|||.. .+.|+++|++++++.|.||++|||.|+.+..+|+++.+|.. |+|++.|+..
T Consensus 155 ALa~~P~iLL~DEaTSALDP~T------T~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 155 ALANNPKILLCDEATSALDPET------TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred HHhcCCCEEEecCccccCChHH------HHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeC-CEEEEeccHH
Confidence 999 9999999999999999 99999999999999999999999999999999999999999 9999999999
Q ss_pred cccCCc
Q 005892 200 QAHMET 205 (671)
Q Consensus 200 e~~~~~ 205 (671)
++|.++
T Consensus 228 ~vF~~P 233 (339)
T COG1135 228 EVFANP 233 (339)
T ss_pred HhhcCc
Confidence 888654
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=4.1e-29 Score=266.43 Aligned_cols=182 Identities=14% Similarity=0.151 Sum_probs=145.6
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
++.|+++|++|.|+. ..++.++++.+ .+||+++|+||||||||||||+|+|+. .|++|++...+
T Consensus 3 ~~~l~i~~v~k~yg~---~~av~~isl~i--~~Gef~~lLGPSGcGKTTlLR~IAGfe----~p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 3 KPALEIRNVSKSFGD---FTAVDDISLDI--KKGEFVTLLGPSGCGKTTLLRMIAGFE----QPSSGEILLDGEDITDVP 73 (352)
T ss_pred CceEEEEeeeeecCC---eeEEecceeee--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCCCC
Confidence 457999999999974 47999999999 999999999999999999999999999 89999742111
Q ss_pred ------ceEeccccCCCcchhhhhccCC--------------------------Cccc--ccccchHHHHHHHHHHHHHH
Q 005892 80 ------GIWMARCAGIEPCTLIMDLEGT--------------------------DGRE--RGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ------gi~~~~~~~~~~~~~vld~~g~--------------------------~~~~--r~~~~~~~qrQrv~iAlAL~ 125 (671)
|..++. ....+.+.|.++.++ .... +....+++|+|||++|+||+
T Consensus 74 p~kR~ig~VFQ~-YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 74 PEKRPIGMVFQS-YALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred hhhcccceeecC-cccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 112211 112233333333211 1111 11223566999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++||||||.++||..- +..+...++++.++.|+|.|+||||.+++...+|++++|.+ |+|...|+|.+++
T Consensus 153 ~~P~vLLLDEPlSaLD~kL------R~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~-G~I~Q~gtP~eiY 225 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKL------REQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMND-GRIEQVGTPEEIY 225 (352)
T ss_pred cCcchhhhcCcccchhHHH------HHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccC-CceeecCCHHHHh
Confidence 8999999999999887 99999999999988899999999999999999999999999 9999999999998
Q ss_pred CCc
Q 005892 203 MET 205 (671)
Q Consensus 203 ~~~ 205 (671)
..+
T Consensus 226 ~~P 228 (352)
T COG3842 226 ERP 228 (352)
T ss_pred hCc
Confidence 653
No 12
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-29 Score=252.27 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=133.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+++.++++++.|+. ..++.++++.+ .+||+|+|+||||||||||||+|+|+. +|++|++...+
T Consensus 2 ~~l~i~~v~~~f~~---~~vl~~i~L~v--~~GEfvsilGpSGcGKSTLLriiAGL~----~p~~G~V~~~g~~v~~p~~ 72 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEVLEDINLSV--EKGEFVAILGPSGCGKSTLLRLIAGLE----KPTSGEVLLDGRPVTGPGP 72 (248)
T ss_pred ceEEEEeeEEEeCc---eEEeccceeEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCcccCCCCC
Confidence 47999999999965 58999999999 999999999999999999999999999 89999743221
Q ss_pred --ceEeccc------cCCCcchhhhhccC------------------CCccc--ccccchHHHHHHHHHHHHHH---HHH
Q 005892 80 --GIWMARC------AGIEPCTLIMDLEG------------------TDGRE--RGEDDTAFEKQSALFALAVS---DIV 128 (671)
Q Consensus 80 --gi~~~~~------~~~~~~~~vld~~g------------------~~~~~--r~~~~~~~qrQrv~iAlAL~---evL 128 (671)
++.++.. +..+|..+.++..| +.+.+ .....+++|||||+||+|++ ++|
T Consensus 73 ~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 73 DIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred CEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 1222211 11234444444333 22211 22345677999999999999 999
Q ss_pred hccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 129 lLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
+||||+++||... +..+.+.+.++.++.++|+||||||++++..++|++++|.+
T Consensus 153 LlDEPFgALDalT------R~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 153 LLDEPFGALDALT------REELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred EEcCCcchhhHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence 9999999999999 99999999999988899999999999999989999998877
No 13
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.1e-29 Score=241.20 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=143.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc----------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT---------- 78 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~---------- 78 (671)
||++++++|+|++ ....+.+++|.. ..|+|+||+|||||||||+|++|++++ .|++|.+...
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~a--e~Gei~GlLG~NGAGKTT~LRmiatlL----~P~~G~v~idg~d~~~~p~~ 72 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEA--EEGEITGLLGENGAGKTTLLRMIATLL----IPDSGKVTIDGVDTVRDPSF 72 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEe--ccceEEEEEcCCCCCchhHHHHHHHhc----cCCCceEEEeecccccChHH
Confidence 5899999999976 457899999999 999999999999999999999999999 8999973210
Q ss_pred ----CceEec------cccCCCcchhhhhccCCCccc--------------------ccccchHHHHHHHHHHHHHH---
Q 005892 79 ----KGIWMA------RCAGIEPCTLIMDLEGTDGRE--------------------RGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 79 ----~gi~~~------~~~~~~~~~~vld~~g~~~~~--------------------r~~~~~~~qrQrv~iAlAL~--- 125 (671)
-|+... +.++.+++.++..+.|+...+ |....+.+|||+|.+|+||+
T Consensus 73 vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 73 VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred HhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 122221 111133444544444443321 11122345999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
.++++||||+|||... ++.+.+.+.+++.+ |.++||+||+|+++..+||++++++. |+++..|+++++..
T Consensus 153 ~i~vlDEP~sGLDi~~------~r~~~dfi~q~k~e-gr~viFSSH~m~EvealCDrvivlh~-Gevv~~gs~~~l~~ 222 (245)
T COG4555 153 SILVLDEPTSGLDIRT------RRKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLHK-GEVVLEGSIEALDA 222 (245)
T ss_pred CeEEEcCCCCCccHHH------HHHHHHHHHHhhcC-CcEEEEecccHHHHHHhhheEEEEec-CcEEEcCCHHHHHH
Confidence 9999999999999998 99999999999876 99999999999999999999999999 99999999887653
No 14
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=261.26 Aligned_cols=182 Identities=19% Similarity=0.208 Sum_probs=146.5
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc--------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-------- 78 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~-------- 78 (671)
|++|+++|++|.|+.. . +++++++.+ .+||+++|+||||||||||||+|+||. .|++|++...
T Consensus 1 M~~i~l~~v~K~yg~~--~-~l~~i~l~i--~~Gef~vllGPSGcGKSTlLr~IAGLe----~~~~G~I~i~g~~vt~l~ 71 (338)
T COG3839 1 MAELELKNVRKSFGSF--E-VLKDVNLDI--EDGEFVVLLGPSGCGKSTLLRMIAGLE----EPTSGEILIDGRDVTDLP 71 (338)
T ss_pred CcEEEEeeeEEEcCCc--e-eeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCCCC
Confidence 4689999999999653 2 899999999 999999999999999999999999999 8999984211
Q ss_pred ---Cce--Eec------cccCCCcchhhhhccCCCccc--------------------ccccchHHHHHHHHHHHHHH--
Q 005892 79 ---KGI--WMA------RCAGIEPCTLIMDLEGTDGRE--------------------RGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 79 ---~gi--~~~------~~~~~~~~~~vld~~g~~~~~--------------------r~~~~~~~qrQrv~iAlAL~-- 125 (671)
+++ .++ +.+..+|..+.+...+.+..+ +....+++|+|||++|+|++
T Consensus 72 P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 72 PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151 (338)
T ss_pred hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence 111 111 111233444444443332211 11234677999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
+++|+|||+++||..- +..+...|++++++.|+|+|+||||..++...++++++|.+ |+|...|+|.+++..
T Consensus 152 P~v~L~DEPlSnLDa~l------R~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~-G~i~Q~g~p~ely~~ 224 (338)
T COG3839 152 PKVFLLDEPLSNLDAKL------RVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND-GRIQQVGTPLELYER 224 (338)
T ss_pred CCEEEecCchhHhhHHH------HHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC-CeeeecCChHHHhhC
Confidence 8999999999999987 88999999999988899999999999999999999999997 999999999998854
No 15
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.1e-29 Score=240.76 Aligned_cols=192 Identities=18% Similarity=0.259 Sum_probs=153.6
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccC
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~ 88 (671)
||+++|++|+|+.+ .++.++++.+ ++|.+++|+|||||||||||.+++.|. ++++|.+.. .|..+.....
T Consensus 1 MI~i~nv~K~y~~~---~vl~~isl~i--~~g~iTs~IGPNGAGKSTLLS~~sRL~----~~d~G~i~i-~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSYGTK---VVLDDVSLDI--PKGGITSIIGPNGAGKSTLLSMMSRLL----KKDSGEITI-DGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhhCCE---Eeeccceeee--cCCceeEEECCCCccHHHHHHHHHHhc----cccCceEEE-eeeecccCCh
Confidence 58999999999664 8999999999 999999999999999999999999999 889996311 1111111000
Q ss_pred ---------------CCcchhhhhccCCC--ccccc---------------------------ccchHHHHHHHHHHHHH
Q 005892 89 ---------------IEPCTLIMDLEGTD--GRERG---------------------------EDDTAFEKQSALFALAV 124 (671)
Q Consensus 89 ---------------~~~~~~vld~~g~~--~~~r~---------------------------~~~~~~qrQrv~iAlAL 124 (671)
......|-|+.++. +..++ ...+++||||+++|+.+
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 11112233333221 11111 11245599999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ |.++||||.++||... ...++++++++.++.|+||++|.||+.++..++|.++.+.+ |+++..|+|+++
T Consensus 151 aQdTdyvlLDEPLNNLDmkH------sv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~-G~vv~~G~~~ei 223 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKH------SVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKN-GKVVKQGSPDEI 223 (252)
T ss_pred eccCcEEEecCcccccchHH------HHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecC-CEEEecCCHHHh
Confidence 9 9999999999999998 89999999999999999999999999999999999999988 999999999999
Q ss_pred cCCccccchhcccccc
Q 005892 202 HMETPLSEFFNVEVVA 217 (671)
Q Consensus 202 ~~~~~l~~~f~~~~~~ 217 (671)
+....+.++|+.++..
T Consensus 224 i~~~~L~eiydm~i~v 239 (252)
T COG4604 224 IQPEILSEIYDMDIPV 239 (252)
T ss_pred cCHHHHHHHhcCCcee
Confidence 9999999999987643
No 16
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-28 Score=252.58 Aligned_cols=182 Identities=18% Similarity=0.183 Sum_probs=144.0
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc-
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC- 86 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~- 86 (671)
|+|.+.++++.|+.. .++.+|++.+ ..|++++++|||||||||||++|+||. .|++|++...+..|+.-.
T Consensus 1 m~i~i~~~~~~~~~~---~a~~di~l~i--~~Ge~vaLlGpSGaGKsTlLRiIAGLe----~p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 1 MSIRINNVKKRFGAF---GALDDISLDI--KSGELVALLGPSGAGKSTLLRIIAGLE----TPDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred Cceeehhhhhhcccc---cccccceeee--cCCcEEEEECCCCCcHHHHHHHHhCcC----CCCCceEEECCEeccchhc
Confidence 479999999999654 5666999999 999999999999999999999999999 899998543333222110
Q ss_pred -------cC-------CCcchhhhhccCCCc-----------------------------ccccccchHHHHHHHHHHHH
Q 005892 87 -------AG-------IEPCTLIMDLEGTDG-----------------------------RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 87 -------~~-------~~~~~~vld~~g~~~-----------------------------~~r~~~~~~~qrQrv~iAlA 123 (671)
.| ..+.+.+.|+..+.- .......+++|+|||++|+|
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 01 112222223221110 00112235669999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++||||||+.+||..- ++.+...|+++....|.|.||||||.+++..+++++++|.+ |+|...|+|.+
T Consensus 152 LA~eP~vLLLDEPf~ALDa~v------r~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKV------RKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred hhcCCCeEeecCCchhhhHHH------HHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecC-CeeeeeCCHHH
Confidence 99 9999999999999987 99999999999988899999999999999999999999999 99999999999
Q ss_pred ccCCc
Q 005892 201 AHMET 205 (671)
Q Consensus 201 ~~~~~ 205 (671)
++..+
T Consensus 225 v~~~P 229 (345)
T COG1118 225 VYDHP 229 (345)
T ss_pred HhcCC
Confidence 98654
No 17
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=8.2e-29 Score=248.25 Aligned_cols=188 Identities=14% Similarity=0.138 Sum_probs=147.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+++++++++++|++ -.++.++++.+ .+|++++||||||||||||+|+|.|.+ +|++|++...+
T Consensus 3 ~lL~v~~l~k~FGG---l~Al~~Vsl~v--~~Gei~~LIGPNGAGKTTlfNlitG~~----~P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 3 PLLEVRGLSKRFGG---LTAVNDVSLEV--RPGEIVGLIGPNGAGKTTLFNLITGFY----KPSSGTVIFRGRDITGLPP 73 (250)
T ss_pred ceeeeccceeecCC---EEEEeceeEEE--cCCeEEEEECCCCCCceeeeeeecccc----cCCCceEEECCcccCCCCH
Confidence 57899999999965 37899999999 999999999999999999999999999 89999842110
Q ss_pred ------ceE--------eccccCCCcchhh------------------------------hhccCCCccc--ccccchHH
Q 005892 80 ------GIW--------MARCAGIEPCTLI------------------------------MDLEGTDGRE--RGEDDTAF 113 (671)
Q Consensus 80 ------gi~--------~~~~~~~~~~~~v------------------------------ld~~g~~~~~--r~~~~~~~ 113 (671)
|+. +.+.+..+|.... ++..|+.... ..+....+
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 110 0111111121111 1112222211 11223445
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
|++++-||+|++ ++|+||||.+|+.+.. ..++.++|+++.+..|+||++|.|||..+..+|+++++|.. |
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e------~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~-G 226 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEE------TEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY-G 226 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHH------HHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccC-C
Confidence 999999999999 9999999999999988 99999999999887789999999999999999999999999 9
Q ss_pred eEEEecCcccccCCccccchh
Q 005892 191 KIWDSVPKPQAHMETPLSEFF 211 (671)
Q Consensus 191 kI~~~g~~~e~~~~~~l~~~f 211 (671)
+++++|+|+++.+++.+.+.|
T Consensus 227 ~~IAeG~P~eV~~dp~VieAY 247 (250)
T COG0411 227 EVIAEGTPEEVRNNPRVIEAY 247 (250)
T ss_pred cCcccCCHHHHhcCHHhHHHh
Confidence 999999999999887765544
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=5.4e-28 Score=243.38 Aligned_cols=170 Identities=24% Similarity=0.291 Sum_probs=132.1
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+++++|++|.|.... ...++.++++.+ .+||+|+|+||||||||||||+|.|+. +|++|.+...+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i--~~Ge~vaI~GpSGSGKSTLLniig~ld----~pt~G~v~i~g~d~~~l~~ 74 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEI--EAGEFVAIVGPSGSGKSTLLNLLGGLD----KPTSGEVLINGKDLTKLSE 74 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----CCCCceEEECCEEcCcCCH
Confidence 478999999996432 357999999999 999999999999999999999999999 89999732111
Q ss_pred -----------ceEeccc------cCCCcchhh------------------hhccCCCccc---ccccchHHHHHHHHHH
Q 005892 80 -----------GIWMARC------AGIEPCTLI------------------MDLEGTDGRE---RGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 -----------gi~~~~~------~~~~~~~~v------------------ld~~g~~~~~---r~~~~~~~qrQrv~iA 121 (671)
|..++.. +..+|+.+. +...|+.... .....+++|+|||+||
T Consensus 75 ~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 1111111 001222221 1122343222 2345678899999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
+|++ ++|+.||||.+||..+ .+.|++++.++.++.|+|+|+||||...+. .|++++.+.+ |++
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t------~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~d-G~~ 220 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKT------AKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKD-GKI 220 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeC-Cee
Confidence 9999 9999999999999999 999999999999888999999999999887 6889888888 884
No 19
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=5.6e-28 Score=255.35 Aligned_cols=181 Identities=14% Similarity=0.145 Sum_probs=143.4
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce-----
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI----- 81 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi----- 81 (671)
++++++.|++|.|+. -..++.+|++.+ .+|+++||+||||||||||||+|+|+. .|++|++...+.-
T Consensus 2 ~~~i~~~~l~k~~~~--~~~~l~~vs~~i--~~Gei~gllG~NGAGKTTllk~l~gl~----~p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 2 IEVIEVRNLTKKYGG--DKTALDGVSFEV--EPGEIFGLLGPNGAGKTTLLKILAGLL----KPTSGEILVLGYDVVKEP 73 (293)
T ss_pred CceeeecceEEEeCC--CCEEEeceeEEE--cCCeEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEEcCEeCccCH
Confidence 456899999999962 248999999999 999999999999999999999999999 8999985322100
Q ss_pred --------EeccccC-------CCcc------------------hhhhhccCCCc--ccccccchHHHHHHHHHHHHHH-
Q 005892 82 --------WMARCAG-------IEPC------------------TLIMDLEGTDG--RERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 82 --------~~~~~~~-------~~~~------------------~~vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~- 125 (671)
++..... .++. ..+++..|+.. ..+....+.+||||+.||+||+
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~ 153 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH 153 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc
Confidence 0111000 0111 12333445554 2233456788999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|||||||+||||.. +..++++|+++.++.|+|||++||.++++...||+++++.+ |+++..|++.++.
T Consensus 154 ~P~lliLDEPt~GLDp~~------~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~-G~~~~~g~~~~l~ 225 (293)
T COG1131 154 DPELLILDEPTSGLDPES------RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILND-GKIIAEGTPEELK 225 (293)
T ss_pred CCCEEEECCCCcCCCHHH------HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeC-CEEEEeCCHHHHH
Confidence 9999999999999999 99999999999987459999999999999988999999988 9999999776643
No 20
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.8e-28 Score=246.58 Aligned_cols=182 Identities=18% Similarity=0.145 Sum_probs=145.0
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+++.++++++.|.+. ..++.++++.+ .+|++++|+||||||||||+++|+|++ .|++|++...+
T Consensus 2 ~~i~~~~l~~~y~~~--~~~l~~v~~~i--~~Ge~~~i~G~nGsGKSTL~~~l~GLl----~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAALKDVSLEI--EKGERVLLIGPNGSGKSTLLKLLNGLL----KPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred ceEEEEEEEEEcCCC--ceeeeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHcCcC----cCCCCEEEECCeeccchhh
Confidence 579999999999663 68999999999 999999999999999999999999999 89999853211
Q ss_pred --------ceEeccc-------cCCCcchhhhhccCCCccc--------------------ccccchHHHHHHHHHHHHH
Q 005892 80 --------GIWMARC-------AGIEPCTLIMDLEGTDGRE--------------------RGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 --------gi~~~~~-------~~~~~~~~vld~~g~~~~~--------------------r~~~~~~~qrQrv~iAlAL 124 (671)
|+.++.. ...+...+.+...|.+..+ .....+++|+|||+||.+|
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 1112111 0011222333333333211 1123456699999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++|||||||++||+.. +..+++++.+|..+.|+|+|++|||++.+..+|++++++.+ |+++.+|+|.++
T Consensus 154 a~~P~iliLDEPta~LD~~~------~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~-G~i~~~g~p~~i 226 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKG------RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD-GKILADGDPAEI 226 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHH------HHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC-CEEeecCCHHHH
Confidence 9 9999999999999999 99999999999887789999999999999989999999998 999999998887
Q ss_pred cCC
Q 005892 202 HME 204 (671)
Q Consensus 202 ~~~ 204 (671)
+.+
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 754
No 21
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=1.7e-27 Score=256.56 Aligned_cols=181 Identities=11% Similarity=0.132 Sum_probs=140.9
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
++++|+++|+++.|+. ..++.+++|.+ .+|+++||+|||||||||||++|+|+. +|++|++...+
T Consensus 38 ~~~~i~i~nl~k~y~~---~~~l~~is~~i--~~Gei~gLlGpNGaGKSTLl~~L~Gl~----~p~~G~i~i~G~~~~~~ 108 (340)
T PRK13536 38 STVAIDLAGVSKSYGD---KAVVNGLSFTV--ASGECFGLLGPNGAGKSTIARMILGMT----SPDAGKITVLGVPVPAR 108 (340)
T ss_pred CceeEEEEEEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHcCC----CCCceEEEECCEECCcc
Confidence 3457999999999964 36999999999 999999999999999999999999999 89999743211
Q ss_pred ------ceE-eccccC-------CCcchh------------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH
Q 005892 80 ------GIW-MARCAG-------IEPCTL------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ------gi~-~~~~~~-------~~~~~~------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+. +..... .++..+ +++..++.. .......+.+|+||+.||+|++
T Consensus 109 ~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 010 000000 011111 111122221 1122345677999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|||||||+|||+.. +..++++|.++.++ |.|||++||+++++..+|++++++.+ |+|+..|++.++.
T Consensus 189 ~~P~lLiLDEPt~gLD~~~------r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~~-G~i~~~g~~~~l~ 260 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHA------RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEA-GRKIAEGRPHALI 260 (340)
T ss_pred cCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999999 99999999999764 99999999999999999999999988 9999999988765
Q ss_pred C
Q 005892 203 M 203 (671)
Q Consensus 203 ~ 203 (671)
.
T Consensus 261 ~ 261 (340)
T PRK13536 261 D 261 (340)
T ss_pred h
Confidence 4
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=1.6e-27 Score=253.51 Aligned_cols=181 Identities=9% Similarity=0.123 Sum_probs=139.6
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
+.++|+++|+++.|+. ..++.++++.+ .+|+++||+||||||||||+++|+|+. +|++|++...+
T Consensus 4 ~~~~i~i~~l~k~~~~---~~~l~~vsl~i--~~Gei~gllGpNGaGKSTLl~~l~Gl~----~p~~G~v~i~G~~~~~~ 74 (306)
T PRK13537 4 SVAPIDFRNVEKRYGD---KLVVDGLSFHV--QRGECFGLLGPNGAGKTTTLRMLLGLT----HPDAGSISLCGEPVPSR 74 (306)
T ss_pred CCceEEEEeEEEEECC---eEEEecceEEE--eCCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEecccc
Confidence 3457999999999964 36999999999 999999999999999999999999999 89999742110
Q ss_pred ------ce-EeccccCC-------Ccchhhh------------------hccCCCcc--cccccchHHHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCAGI-------EPCTLIM------------------DLEGTDGR--ERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ------gi-~~~~~~~~-------~~~~~vl------------------d~~g~~~~--~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+ ++...... ++..+.. +..++... ......+.+|+||++||+|++
T Consensus 75 ~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred hHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 00 00000011 1111111 11122111 111234567999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|+|||||+|||+.+ +..+++++.++.++ |+|||++||+++++..+|++++++.+ |+++..|++.++.
T Consensus 155 ~~P~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~~-G~i~~~g~~~~l~ 226 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQA------RHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEE-GRKIAEGAPHALI 226 (306)
T ss_pred CCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999 99999999999754 99999999999999989999999988 9999999988765
Q ss_pred C
Q 005892 203 M 203 (671)
Q Consensus 203 ~ 203 (671)
.
T Consensus 227 ~ 227 (306)
T PRK13537 227 E 227 (306)
T ss_pred h
Confidence 3
No 23
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.3e-27 Score=232.71 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=141.6
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~ 86 (671)
.+.+++.|+++.|+. ..++++|++.+ .++.|+||+||+||||||||++++.+. +...|- ..++.+.+.+.
T Consensus 5 ~~~~~~~~l~~yYg~---~~aL~~i~l~i--~~~~VTAlIGPSGcGKST~LR~lNRmn----dl~~~~-r~~G~v~~~g~ 74 (253)
T COG1117 5 IPAIEVRDLNLYYGD---KHALKDINLDI--PKNKVTALIGPSGCGKSTLLRCLNRMN----DLIPGA-RVEGEVLLDGK 74 (253)
T ss_pred cceeEecceeEEECc---hhhhccCceec--cCCceEEEECCCCcCHHHHHHHHHhhc----ccCcCc-eEEEEEEECCe
Confidence 457999999999965 48999999999 999999999999999999999999988 555432 11112222221
Q ss_pred cC----------------------------CCcchhhhhccCCCcc------------------------cccccchHHH
Q 005892 87 AG----------------------------IEPCTLIMDLEGTDGR------------------------ERGEDDTAFE 114 (671)
Q Consensus 87 ~~----------------------------~~~~~~vld~~g~~~~------------------------~r~~~~~~~q 114 (671)
.. ++|..+.+...|.... ..+...+++|
T Consensus 75 ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQ 154 (253)
T COG1117 75 NIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQ 154 (253)
T ss_pred eccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhH
Confidence 11 2334444444444320 0011235669
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||++||+|++ +||||||||++|||.+ ...|-+++.+|++ .-|||+|||+|..+.+.+|...++.. |+
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIs------T~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~-G~ 225 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPIS------TLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYL-GE 225 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchh------HHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcc-cE
Confidence 99999999999 9999999999999999 8899999999973 68999999999999999999999988 99
Q ss_pred EEEecCcccccCCcc
Q 005892 192 IWDSVPKPQAHMETP 206 (671)
Q Consensus 192 I~~~g~~~e~~~~~~ 206 (671)
+++.|+..++|.++.
T Consensus 226 LvE~g~T~~iF~~P~ 240 (253)
T COG1117 226 LVEFGPTDKIFTNPK 240 (253)
T ss_pred EEEEcCHHhhhcCcc
Confidence 999999999887643
No 24
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.6e-27 Score=258.31 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=141.5
Q ss_pred ceEEEEeeeEEe-ccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 8 CSTQLIDGDGTF-NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y-~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
++|+++|+++.| +. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~~l~i~~l~~~~~~~---~~~l~~vsl~i--~~Ge~~~llG~sGsGKSTLLr~iaGl~----~p~~G~I~~~g~~i~~~~ 72 (356)
T PRK11650 2 AGLKLQAVRKSYDGK---TQVIKGIDLDV--ADGEFIVLVGPSGCGKSTLLRMVAGLE----RITSGEIWIGGRVVNELE 72 (356)
T ss_pred CEEEEEeEEEEeCCC---CEEEeeeeEEE--cCCCEEEEECCCCCcHHHHHHHHHCCC----CCCceEEEECCEECCCCC
Confidence 469999999999 44 36899999999 999999999999999999999999999 89999743211
Q ss_pred ----ce--Eecc------ccCCCcchhhhh------------------ccCCCcc--cccccchHHHHHHHHHHHHHH--
Q 005892 80 ----GI--WMAR------CAGIEPCTLIMD------------------LEGTDGR--ERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ----gi--~~~~------~~~~~~~~~vld------------------~~g~~~~--~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
.+ .++. ....+++.+.+. ..|+... ......+++|+|||+||+|++
T Consensus 73 ~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~ 152 (356)
T PRK11650 73 PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVRE 152 (356)
T ss_pred HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 11 1111 000111211111 1122111 111234677999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++||||||+++||+.. +..+.+.++++.++.|+|+|+||||.+++..+|+++++|.+ |+|+..|++.+++.+
T Consensus 153 P~llLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~-G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 153 PAVFLFDEPLSNLDAKL------RVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG-GVAEQIGTPVEVYEK 225 (356)
T ss_pred CCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEEECCHHHHHhC
Confidence 9999999999999998 99999999999876799999999999999989999999988 999999999888765
Q ss_pred c
Q 005892 205 T 205 (671)
Q Consensus 205 ~ 205 (671)
+
T Consensus 226 p 226 (356)
T PRK11650 226 P 226 (356)
T ss_pred C
Confidence 3
No 25
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=2.4e-27 Score=227.12 Aligned_cols=172 Identities=19% Similarity=0.168 Sum_probs=133.3
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccC
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~ 88 (671)
||.+.++.+.|+.. ++-+ ++.+ ..|++|+|+||+|||||||||+|+|+. .|.+|. +|+.+...
T Consensus 1 ~l~L~~V~~~y~~~---~~~f--dl~v--~~ge~vAi~GpSGaGKSTLLnLIAGF~----~P~~G~------i~i~g~d~ 63 (231)
T COG3840 1 MLALDDVRFSYGHL---PMRF--DLTV--PAGEIVAILGPSGAGKSTLLNLIAGFE----TPASGE------ILINGVDH 63 (231)
T ss_pred CccccceEEeeCcc---eEEE--EEee--cCCcEEEEECCCCccHHHHHHHHHhcc----CCCCce------EEEcCeec
Confidence 47789999999542 3433 4456 779999999999999999999999999 799996 34333211
Q ss_pred --------------CCc----chhhhhccCC-------------------------Cccc--ccccchHHHHHHHHHHHH
Q 005892 89 --------------IEP----CTLIMDLEGT-------------------------DGRE--RGEDDTAFEKQSALFALA 123 (671)
Q Consensus 89 --------------~~~----~~~vld~~g~-------------------------~~~~--r~~~~~~~qrQrv~iAlA 123 (671)
.++ ...|..+.|+ .+.. ..+..+++|||||++|++
T Consensus 64 t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARc 143 (231)
T COG3840 64 TASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARC 143 (231)
T ss_pred CcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHH
Confidence 011 1112222222 1111 112345669999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. .|++||||++.|||.- +.++..++.+++.+++.|++||||.++.+..++++++++.+ |+|.+.|+..+
T Consensus 144 lvR~~PilLLDEPFsALdP~L------R~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~-Gri~~~g~~~~ 216 (231)
T COG3840 144 LVREQPILLLDEPFSALDPAL------RAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDN-GRIAAQGSTQE 216 (231)
T ss_pred HhccCCeEEecCchhhcCHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeC-CEEEeeccHHH
Confidence 99 8999999999999877 99999999999999999999999999999999999999988 99999999888
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
.+..
T Consensus 217 ~~~~ 220 (231)
T COG3840 217 LLSG 220 (231)
T ss_pred Hhcc
Confidence 7654
No 26
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.2e-27 Score=231.34 Aligned_cols=190 Identities=16% Similarity=0.219 Sum_probs=150.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce----E--
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI----W-- 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi----~-- 82 (671)
||+..|++++..+ +.++.++++.. .+||+++|+|||||||||||+.|+|-. .|++|+... .+. |
T Consensus 1 mi~a~nls~~~~G---r~ll~~vsl~~--~pGev~ailGPNGAGKSTlLk~LsGel----~p~~G~v~~-~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSLAG---RRLLDGVSLDL--RPGEVLAILGPNGAGKSTLLKALSGEL----SPDSGEVTL-NGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEeec---ceeccCcceec--cCCcEEEEECCCCccHHHHHHHhhCcc----CCCCCeEee-CCcChhhCCH
Confidence 5899999999955 48999999999 999999999999999999999999988 899997311 111 0
Q ss_pred ---------eccccCCCcchhhhhcc------------------------------CCCcccccccchHHHHHHHHHHHH
Q 005892 83 ---------MARCAGIEPCTLIMDLE------------------------------GTDGRERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 83 ---------~~~~~~~~~~~~vld~~------------------------------g~~~~~r~~~~~~~qrQrv~iAlA 123 (671)
+...+.......+.++. |+..+... ..+++|+|||.+|+.
T Consensus 71 ~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~-~LSGGEqQRVqlARv 149 (259)
T COG4559 71 EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR-TLSGGEQQRVQLARV 149 (259)
T ss_pred HHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchh-hcCchHHHHHHHHHH
Confidence 11111111111222322 11111111 224569999999999
Q ss_pred HH---------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 124 VS---------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 124 L~---------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
|+ .+|+|||||+.||... +..++++.+++.++ |..|+.|-||++.+..+||++++|.+ |++++
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~H------Q~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~-Grv~a 221 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAH------QHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQ-GRVIA 221 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHH------HHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeC-CeEee
Confidence 99 4889999999999999 99999999999986 89999999999999999999999999 99999
Q ss_pred ecCcccccCCccccchhcccccc
Q 005892 195 SVPKPQAHMETPLSEFFNVEVVA 217 (671)
Q Consensus 195 ~g~~~e~~~~~~l~~~f~~~~~~ 217 (671)
.|+|.+++..+.+...|+.++..
T Consensus 222 ~g~p~~vlt~Etl~~vyg~~~~V 244 (259)
T COG4559 222 SGSPQDVLTDETLERVYGADIRV 244 (259)
T ss_pred cCCHHHhcCHHHHHHHhCCceee
Confidence 99999999999999999877543
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=2.7e-27 Score=256.17 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=143.1
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
|++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~GpsGsGKSTLLr~iaGl~----~p~~G~I~i~g~~~~~~~ 72 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA---FTALKDISLSV--KKGEFVCLLGPSGCGKTTLLRIIAGLE----RQTAGTIYQGGRDITRLP 72 (353)
T ss_pred CcEEEEEEEEEEeCC---eEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHCCC----CCCceEEEECCEECCCCC
Confidence 457999999999964 35889999999 899999999999999999999999999 89999743211
Q ss_pred ----ce--Eeccc------cCCCcchhhh------------------hccCCCc--ccccccchHHHHHHHHHHHHHH--
Q 005892 80 ----GI--WMARC------AGIEPCTLIM------------------DLEGTDG--RERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ----gi--~~~~~------~~~~~~~~vl------------------d~~g~~~--~~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
.+ .++.. ...++..+.+ +..|+.. .......+++|+|||++|+||+
T Consensus 73 ~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred HHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 11 11110 0011122111 1112221 1122335677999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++||||||+++||+.. +..+.+.|+++.++.|+|+|+||||.+++..+|+++++|.+ |+|+..|++.+++.+
T Consensus 153 P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~-G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 153 PGLLLLDEPLSALDARV------REHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH-GVIEQVGTPQEIYRH 225 (353)
T ss_pred CCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 9999999999999998 99999999999877799999999999999889999999998 999999999888765
Q ss_pred c
Q 005892 205 T 205 (671)
Q Consensus 205 ~ 205 (671)
+
T Consensus 226 p 226 (353)
T TIGR03265 226 P 226 (353)
T ss_pred C
Confidence 3
No 28
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.2e-27 Score=255.35 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=142.6
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
|++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 4 ~~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~llGpsGsGKSTLLr~IaGl~----~p~~G~I~~~g~~i~~~~ 74 (351)
T PRK11432 4 KNFVVLKNITKRFGS---NTVIDNLNLTI--KQGTMVTLLGPSGCGKTTVLRLVAGLE----KPTEGQIFIDGEDVTHRS 74 (351)
T ss_pred CcEEEEEeEEEEECC---eEEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHHCCC----CCCceEEEECCEECCCCC
Confidence 457999999999964 36899999999 999999999999999999999999999 89999743211
Q ss_pred ----ce--Eeccc------cCCCcchhhh------------------hccCCCcc--cccccchHHHHHHHHHHHHHH--
Q 005892 80 ----GI--WMARC------AGIEPCTLIM------------------DLEGTDGR--ERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ----gi--~~~~~------~~~~~~~~vl------------------d~~g~~~~--~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
.+ .++.. ...++..+.+ +..|+... ......+++|+|||++|+|++
T Consensus 75 ~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 75 IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILK 154 (351)
T ss_pred HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 11 11110 0111222211 11122211 112344677999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++||||||+++||+.. +..+.+.|+++.++.|+|+|+||||.+++..+|+++++|.+ |+|+..|++.+++..
T Consensus 155 P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~-G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 155 PKVLLFDEPLSNLDANL------RRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK-GKIMQIGSPQELYRQ 227 (351)
T ss_pred CCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 9999999999999998 99999999999876799999999999999889999999998 999999999888754
No 29
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.94 E-value=3.9e-27 Score=253.74 Aligned_cols=183 Identities=11% Similarity=0.113 Sum_probs=141.7
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
||+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i--~~Gei~gIiG~sGaGKSTLlr~I~gl~----~p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHV--PAGQIYGVIGASGAGKSTLIRCVNLLE----RPTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCcCCH
Confidence 489999999995321 246899999999 999999999999999999999999999 89999742111
Q ss_pred --------ceE--eccc------cCCCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHH
Q 005892 80 --------GIW--MARC------AGIEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 --------gi~--~~~~------~~~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlA 123 (671)
.+- ++.. ...++..+. ++..|+... ......+++|+|||+||+|
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 111 1110 001111111 122233211 1123456779999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++||+||||++||+.. ...++++|+++.++.|.|||+|||+++.+..+|+++++|.+ |+|++.|++.+
T Consensus 155 L~~~P~iLLlDEPts~LD~~t------~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~-G~iv~~g~~~~ 227 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPAT------TQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISN-GELIEQGTVSE 227 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHH
Confidence 99 9999999999999999 99999999999876699999999999999989999999988 99999999888
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
++.+
T Consensus 228 v~~~ 231 (343)
T TIGR02314 228 IFSH 231 (343)
T ss_pred HHcC
Confidence 7653
No 30
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=4e-27 Score=258.18 Aligned_cols=190 Identities=18% Similarity=0.183 Sum_probs=147.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|++ ..++.+++|.+ .+|++++|+||||||||||||+|+|++ +|++|++...+
T Consensus 2 ~~L~~~nls~~y~~---~~vL~~vs~~i--~~Geiv~liGpNGaGKSTLLk~LaGll----~p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 2 PMIDVSDLSVEFGD---TTVLDGVDLSV--REGSLVGLVGPNGAGKTTLLRAINGTL----TPTAGTVLVAGDDVEALSA 72 (402)
T ss_pred ceEEEeeEEEEECC---EEEEEeeEEEE--CCCCEEEEECCCCchHHHHHHHHhcCC----CCCCcEEEECCEEcCcCCH
Confidence 57999999999964 47999999999 999999999999999999999999999 89999742111
Q ss_pred -----ce-EeccccCCCcchhhh-----------------------------hccCCCcc--cccccchHHHHHHHHHHH
Q 005892 80 -----GI-WMARCAGIEPCTLIM-----------------------------DLEGTDGR--ERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 -----gi-~~~~~~~~~~~~~vl-----------------------------d~~g~~~~--~r~~~~~~~qrQrv~iAl 122 (671)
.+ ++...........+. +..|+... ......+.+||||++||+
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IAr 152 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLAR 152 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 01 000000000000111 11122110 111234567999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
||+ ++|||||||++||+.. +..++++|+++.+ .|+|||++|||++++..+|++++++.+ |+++..|+++
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~------~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~-G~iv~~G~~~ 224 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINH------QVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLAD-GRVRAAGPPA 224 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999 9999999999999998 9999999999986 489999999999999989999999988 9999999999
Q ss_pred cccCCccccchhccc
Q 005892 200 QAHMETPLSEFFNVE 214 (671)
Q Consensus 200 e~~~~~~l~~~f~~~ 214 (671)
+++....+.+.|+..
T Consensus 225 ev~~~~~l~~~~~~~ 239 (402)
T PRK09536 225 DVLTADTLRAAFDAR 239 (402)
T ss_pred HHhCcHHHHHHhCCc
Confidence 988877788888754
No 31
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.94 E-value=4.6e-27 Score=256.01 Aligned_cols=184 Identities=16% Similarity=0.143 Sum_probs=143.1
Q ss_pred CCcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc----
Q 005892 5 EECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---- 80 (671)
Q Consensus 5 ~~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g---- 80 (671)
.++++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 10 ~~~~~L~l~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~LlGpsGsGKSTLLr~IaGl~----~p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 10 SLSPLVELRGISKSFDG---KEVISNLDLTI--NNGEFLTLLGPSGCGKTTVLRLIAGFE----TPDSGRIMLDGQDITH 80 (375)
T ss_pred cCCceEEEEEEEEEECC---eEEEeeeEEEE--eCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCC
Confidence 45568999999999964 36889999999 999999999999999999999999999 899997432111
Q ss_pred ---------eEeccc------cCCCcchhhh------------------hccCCCcc--cccccchHHHHHHHHHHHHHH
Q 005892 81 ---------IWMARC------AGIEPCTLIM------------------DLEGTDGR--ERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 81 ---------i~~~~~------~~~~~~~~vl------------------d~~g~~~~--~r~~~~~~~qrQrv~iAlAL~ 125 (671)
..++.. ...+++.+.+ +..|+... ......+++|+|||+||+||+
T Consensus 81 ~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 81 VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred CCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 111110 0011111111 11122211 111234567999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++||||||+++||+.. +..+.+.|+++.++.|+|+|+||||.+++..++|++++|.+ |+|...|++.+++
T Consensus 161 ~~P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~-G~i~~~g~~~~i~ 233 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKL------RKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRD-GRIEQDGTPREIY 233 (375)
T ss_pred cCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999998 99999999999876799999999999999889999999998 9999999998887
Q ss_pred CC
Q 005892 203 ME 204 (671)
Q Consensus 203 ~~ 204 (671)
..
T Consensus 234 ~~ 235 (375)
T PRK09452 234 EE 235 (375)
T ss_pred hC
Confidence 54
No 32
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=6.3e-27 Score=233.05 Aligned_cols=187 Identities=16% Similarity=0.142 Sum_probs=145.8
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc---------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--------- 78 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~--------- 78 (671)
+|++++|++..|+. ..++++|++.+ .+|+|++|+||||+|||||||+|+|+. +|.+|++.-.
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v--~~Geiv~llG~NGaGKTTlLkti~Gl~----~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEV--ERGEIVALLGRNGAGKTTLLKTIMGLV----RPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeeEEECCeecCCCCH
Confidence 57999999999965 48999999999 999999999999999999999999999 7889974211
Q ss_pred -----CceE-eccccCCCcchhhhhcc---------------------CCCc------ccccccchHHHHHHHHHHHHHH
Q 005892 79 -----KGIW-MARCAGIEPCTLIMDLE---------------------GTDG------RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 79 -----~gi~-~~~~~~~~~~~~vld~~---------------------g~~~------~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.|+- +.......+.+.|.++. .+.+ ..+++..+++|+|.++||+||+
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 0110 00000011111111111 0111 1233445677999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|+||||+.||-|.- .++|++.+++|+++.|+||++|.++...+..++|+.++|.+ |+|+.+|+..++.
T Consensus 153 ~~PklLLLDEPs~GLaP~i------v~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~-Griv~~G~~~eL~ 225 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKI------VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN-GRIVLSGTAAELL 225 (237)
T ss_pred cCCCEEEecCCccCcCHHH------HHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeC-CEEEEecCHHHHh
Confidence 9999999999999887 99999999999977789999999999999999999999999 9999999999888
Q ss_pred CCccccch
Q 005892 203 METPLSEF 210 (671)
Q Consensus 203 ~~~~l~~~ 210 (671)
.++.+.+.
T Consensus 226 ~~~~v~~~ 233 (237)
T COG0410 226 ADPDVREA 233 (237)
T ss_pred cCHHHHHH
Confidence 76554433
No 33
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=8e-27 Score=225.15 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=137.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc----------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT---------- 78 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~---------- 78 (671)
||+++|++|.|... ..++.+++|.+ .+||++-|+||||||||||||+|+|.. +|+.|.+...
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i--~~Gef~fl~GpSGAGKSTllkLi~~~e----~pt~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHI--PKGEFVFLTGPSGAGKSTLLKLIYGEE----RPTRGKILVNGHDLSRLKGR 72 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEee--cCceEEEEECCCCCCHHHHHHHHHhhh----cCCCceEEECCeeccccccc
Confidence 58999999999763 67999999999 999999999999999999999999999 8999973210
Q ss_pred --------CceEecc------ccCCCcchhhhhccCCCccc------------------c--cccchHHHHHHHHHHHHH
Q 005892 79 --------KGIWMAR------CAGIEPCTLIMDLEGTDGRE------------------R--GEDDTAFEKQSALFALAV 124 (671)
Q Consensus 79 --------~gi~~~~------~~~~~~~~~vld~~g~~~~~------------------r--~~~~~~~qrQrv~iAlAL 124 (671)
-|+.++. ...++|..+.+.+.|..+.+ + ....+++|+|||+||+|+
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred ccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 1222221 11245555555555544322 1 123456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
+ ++||.||||.+|||.. ..++++++.++++. |+|||++|||.+.+....-+++.+.+ |+++.+..
T Consensus 153 V~~P~vLlADEPTGNLDp~~------s~~im~lfeeinr~-GtTVl~ATHd~~lv~~~~~rvl~l~~-Grl~~d~~ 220 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDL------SWEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALED-GRLVRDES 220 (223)
T ss_pred ccCCCeEeecCCCCCCChHH------HHHHHHHHHHHhhc-CcEEEEEeccHHHHHhccCcEEEEeC-CEEEeccc
Confidence 9 9999999999999988 99999999999875 99999999999998876666666666 99987654
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=1.4e-26 Score=250.74 Aligned_cols=181 Identities=18% Similarity=0.185 Sum_probs=140.6
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
|+|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~~L~i~~l~~~~~~---~~~l~~isl~i--~~Ge~~~llGpsGsGKSTLLr~IaGl~----~p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 1 MSIEIANIKKSFGR---TQVLNDISLDI--PSGQMVALLGPSGSGKTTLLRIIAGLE----HQTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred CEEEEEEEEEEeCC---eEEEEEeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCCH
Confidence 46999999999964 36899999999 999999999999999999999999999 89999742111
Q ss_pred ---ce--Eeccc------cCCCcchhh----------------------hhccCCCcc--cccccchHHHHHHHHHHHHH
Q 005892 80 ---GI--WMARC------AGIEPCTLI----------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ---gi--~~~~~------~~~~~~~~v----------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL 124 (671)
.+ .++.. ...++..+. ++..++... ......+++|+|||+||+||
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 11 11100 001111111 111122111 11123456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++||+|||+++||+.. +..+.+.|.++.++.|+|+|+||||++++..+|+++++|.+ |+|+..|++.++
T Consensus 152 ~~~P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~-G~i~~~g~~~~i 224 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQV------RKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQ-GNIEQAGTPDQV 224 (353)
T ss_pred hcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 9 9999999999999998 99999999999876799999999999999999999999988 999999999888
Q ss_pred cCC
Q 005892 202 HME 204 (671)
Q Consensus 202 ~~~ 204 (671)
+.+
T Consensus 225 ~~~ 227 (353)
T PRK10851 225 WRE 227 (353)
T ss_pred HhC
Confidence 754
No 35
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.3e-26 Score=252.46 Aligned_cols=181 Identities=14% Similarity=0.125 Sum_probs=140.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~~l~i~~l~~~~~~---~~vl~~vsl~i--~~Ge~~~l~G~nGsGKSTLL~~iaGl~----~p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 2 ASVTLRNVTKAYGD---VVISKDINLDI--HEGEFVVFVGPSGCGKSTLLRMIAGLE----DITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred CEEEEEEEEEEeCC---eEEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCCCCH
Confidence 46999999999964 36899999999 999999999999999999999999999 89999743111
Q ss_pred ---ce--Eeccc------cCCCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---
Q 005892 80 ---GI--WMARC------AGIEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 80 ---gi--~~~~~------~~~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
.+ .++.. ...++..+. ++..|+... ......+++|+||++||+|++
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 11 11110 001111111 111222211 112335677999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++|||||||++||+.. +..+.+.|.++.++.|+|+|+||||++++...|++++++.+ |+|+..|++.+++..
T Consensus 153 ~lLLLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~-G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 153 SVFLLDEPLSNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA-GRVAQVGKPLELYHY 224 (369)
T ss_pred CEEEEeCCcccCCHHH------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 9999999999999998 99999999999766689999999999999888999999988 999999998887653
No 36
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.3e-26 Score=238.47 Aligned_cols=186 Identities=17% Similarity=0.172 Sum_probs=146.6
Q ss_pred cceEEEEeeeEEeccc---------------------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccC
Q 005892 7 CCSTQLIDGDGTFNVS---------------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~---------------------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
+..|+++|++|-|+.. +..--+.++++.+ ..|||..|+|-||||||||+++|++|.
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v--~~GeIfViMGLSGSGKSTLvR~~NrLi- 78 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDV--EEGEIFVIMGLSGSGKSTLVRLLNRLI- 78 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeee--cCCeEEEEEecCCCCHHHHHHHHhccC-
Confidence 3469999999999742 1112356778899 999999999999999999999999999
Q ss_pred CCCCCCCCeeeccCc-------------------eE------eccccCCCcchhhhhccCCCccccc-------------
Q 005892 66 REMDAFKGRSQTTKG-------------------IW------MARCAGIEPCTLIMDLEGTDGRERG------------- 107 (671)
Q Consensus 66 ~~m~p~sG~~q~~~g-------------------i~------~~~~~~~~~~~~vld~~g~~~~~r~------------- 107 (671)
.|++|++...+. .. ++.....+|..+.+++.|.+..+|.
T Consensus 79 ---ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~ 155 (386)
T COG4175 79 ---EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155 (386)
T ss_pred ---CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence 899997422111 00 1111123344444445555443322
Q ss_pred -------ccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 108 -------EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 108 -------~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
...+++|+|||.+|+||+ ++||+|||+++|||-- +.++.+.|++|.++.++||||||||++++.
T Consensus 156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI------R~~mQdeLl~Lq~~l~KTIvFitHDLdEAl 229 (386)
T COG4175 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI------RTEMQDELLELQAKLKKTIVFITHDLDEAL 229 (386)
T ss_pred hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH------HHHHHHHHHHHHHHhCCeEEEEecCHHHHH
Confidence 234566999999999999 9999999999999988 999999999998888999999999999999
Q ss_pred ccccchhhhhcCCeEEEecCcccccCCc
Q 005892 178 LENLEPVLREDIQKIWDSVPKPQAHMET 205 (671)
Q Consensus 178 ~~~~~~~ll~~~GkI~~~g~~~e~~~~~ 205 (671)
++.+++.+|.+ |+|+..|+|+++..++
T Consensus 230 riG~rIaimkd-G~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 230 RIGDRIAIMKD-GEIVQVGTPEEILLNP 256 (386)
T ss_pred hccceEEEecC-CeEEEeCCHHHHHcCc
Confidence 99999999999 9999999999988653
No 37
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.3e-26 Score=235.83 Aligned_cols=179 Identities=18% Similarity=0.148 Sum_probs=135.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDI--PSGELVALLGPSGSGKTTLLRLIAGLE----RPDSGTILFGGEDATDVPVQ 72 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCCcc
Confidence 6999999999964 36899999999 999999999999999999999999999 79999742111
Q ss_pred --ceE-eccccCCCcchhhhh-----------------------------ccCCCc--ccccccchHHHHHHHHHHHHHH
Q 005892 80 --GIW-MARCAGIEPCTLIMD-----------------------------LEGTDG--RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 --gi~-~~~~~~~~~~~~vld-----------------------------~~g~~~--~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+. +.......+...+.+ ..|+.. .......+.+|+||++||+|++
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 111 111000000001111 111111 0111234566999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|||||||++||+.. +..+.+++.++.++.|+|||+||||++.+...|++++++.+ |+++..|+++++.
T Consensus 153 ~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 225 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKV------RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNK-GRIEQVGTPDEVY 225 (239)
T ss_pred cCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEecCHHHHh
Confidence 9999999999999999 99999999999765589999999999988888999999887 9999999877665
Q ss_pred C
Q 005892 203 M 203 (671)
Q Consensus 203 ~ 203 (671)
.
T Consensus 226 ~ 226 (239)
T cd03296 226 D 226 (239)
T ss_pred c
Confidence 3
No 38
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=9.2e-27 Score=222.49 Aligned_cols=182 Identities=18% Similarity=0.174 Sum_probs=142.3
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-eEec-
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMA- 84 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-i~~~- 84 (671)
++.|+++|+.|+|+. ..+++.|++.- ..|++++|||.+||||||+|+||+-+. .|+.|++...+. +.+.
T Consensus 4 ~~~l~v~dlHK~~G~---~eVLKGvSL~A--~~GdVisIIGsSGSGKSTfLRCiN~LE----~P~~G~I~v~geei~~k~ 74 (256)
T COG4598 4 ENALEVEDLHKRYGE---HEVLKGVSLQA--NAGDVISIIGSSGSGKSTFLRCINFLE----KPSAGSIRVNGEEIRLKR 74 (256)
T ss_pred ccceehhHHHhhccc---chhhcceeeec--CCCCEEEEecCCCCchhHHHHHHHhhc----CCCCceEEECCeEEEeee
Confidence 457999999999965 58999999998 999999999999999999999999999 899998432211 1100
Q ss_pred cccC--------------------C--Cc---chhhh--------------------------hccCCCccc--ccccch
Q 005892 85 RCAG--------------------I--EP---CTLIM--------------------------DLEGTDGRE--RGEDDT 111 (671)
Q Consensus 85 ~~~~--------------------~--~~---~~~vl--------------------------d~~g~~~~~--r~~~~~ 111 (671)
+..| + .| .+.++ +..|+..+. .....+
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 0000 0 00 11111 112222211 112235
Q ss_pred HHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 112 ~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
++|+||++||+||+ +++++||||++|||+- ..+++.++.+|.++ |.|+++|||.|.++...+.+++++++
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPEl------VgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~ 227 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPEL------VGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQ 227 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHH------HHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeec
Confidence 66999999999999 9999999999999987 99999999999876 99999999999999999999999998
Q ss_pred CCeEEEecCcccccCCc
Q 005892 189 IQKIWDSVPKPQAHMET 205 (671)
Q Consensus 189 ~GkI~~~g~~~e~~~~~ 205 (671)
|.|-+.|+|+++|.++
T Consensus 228 -G~iEE~G~P~qvf~nP 243 (256)
T COG4598 228 -GKIEEEGPPEQVFGNP 243 (256)
T ss_pred -ceecccCChHHHhcCC
Confidence 9999999999998664
No 39
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=2.1e-27 Score=230.77 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=151.0
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
|+++.+.|+.|+|+. +.++.++++.+ .+|||||++|||||||||.+.++.|+. +|++|++....
T Consensus 2 ~~~L~a~~l~K~y~k---r~Vv~~Vsl~v--~~GEiVGLLGPNGAGKTT~Fymi~Glv----~~d~G~i~ld~~diT~lP 72 (243)
T COG1137 2 MSTLVAENLAKSYKK---RKVVNDVSLEV--NSGEIVGLLGPNGAGKTTTFYMIVGLV----RPDSGKILLDDEDITKLP 72 (243)
T ss_pred CcEEEehhhhHhhCC---eeeeeeeeEEE--cCCcEEEEECCCCCCceeEEEEEEEEE----ecCCceEEECCcccccCC
Confidence 457999999999965 48999999999 999999999999999999999999999 89999842110
Q ss_pred -------ce-E-------eccccCCCcchhhhhccCCCcc--cc--------------------cccchHHHHHHHHHHH
Q 005892 80 -------GI-W-------MARCAGIEPCTLIMDLEGTDGR--ER--------------------GEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 -------gi-~-------~~~~~~~~~~~~vld~~g~~~~--~r--------------------~~~~~~~qrQrv~iAl 122 (671)
|+ + +.+.+..+|+..+++...-+.. ++ +...+++||+|+-||+
T Consensus 73 m~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 73 MHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred hHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 11 0 0011112344444444332211 11 1123455999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
||+ ..++||||++|+||.. ...+.+++..|... |+.|+++-|++.++..+|++.+++.+ |+|.++|+|+
T Consensus 153 aLa~~P~fiLLDEPFAGVDPia------V~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIA------VIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred HHhcCCCEEEecCCccCCCchh------HHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEec-CeEEecCCHH
Confidence 999 9999999999999999 99999999999764 99999999999999999999999999 9999999999
Q ss_pred cccCCccccchhc
Q 005892 200 QAHMETPLSEFFN 212 (671)
Q Consensus 200 e~~~~~~l~~~f~ 212 (671)
++.+++...++|-
T Consensus 225 ei~~n~~Vr~~YL 237 (243)
T COG1137 225 EIVNNEDVRRVYL 237 (243)
T ss_pred HHhcChhhhhhcc
Confidence 9999888777663
No 40
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-26 Score=246.32 Aligned_cols=188 Identities=11% Similarity=0.102 Sum_probs=140.9
Q ss_pred ceEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 8 CSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
.+|+++|+++.|+... ...++++++|.+ .+|++++|+|+||||||||+++|+|++.+...|++|++...+
T Consensus 2 ~~L~v~~l~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~ 79 (326)
T PRK11022 2 ALLNVDKLSVHFGDESAPFRAVDRISYSV--KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS 79 (326)
T ss_pred ceEEEeCeEEEECCCCccEEEEeeeEEEE--CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC
Confidence 4799999999996421 136899999999 999999999999999999999999998211114678632111
Q ss_pred ------------ceEecccc-CCCcch--------------------------hhhhccCCCc-----ccccccchHHHH
Q 005892 80 ------------GIWMARCA-GIEPCT--------------------------LIMDLEGTDG-----RERGEDDTAFEK 115 (671)
Q Consensus 80 ------------gi~~~~~~-~~~~~~--------------------------~vld~~g~~~-----~~r~~~~~~~qr 115 (671)
+..++... ...+.. -.++..|+.. .......+++|+
T Consensus 80 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~ 159 (326)
T PRK11022 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence 01111100 000000 0112223321 112234567899
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
|||+||+|++ ++||+||||++||+.. +..++++|.++.++.|.|+||||||++.+..+|+++++|.+ |+|
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~------~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~-G~i 232 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTI------QAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA-GQV 232 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999999876799999999999999888999999988 999
Q ss_pred EEecCcccccCC
Q 005892 193 WDSVPKPQAHME 204 (671)
Q Consensus 193 ~~~g~~~e~~~~ 204 (671)
++.|++.+++.+
T Consensus 233 ve~g~~~~~~~~ 244 (326)
T PRK11022 233 VETGKAHDIFRA 244 (326)
T ss_pred EEECCHHHHhhC
Confidence 999998887653
No 41
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=1.9e-26 Score=250.23 Aligned_cols=183 Identities=14% Similarity=0.155 Sum_probs=142.4
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCC--CeeeccC-----
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK--GRSQTTK----- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~s--G~~q~~~----- 79 (671)
|-.|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++ |++...+
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~----~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEI--EAGELLALIGKSGCGKTTLLRAIAGFV----KAAGLTGRIAIADRDLTH 73 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCCEEEEECCEECCC
Confidence 446999999999964 36899999999 999999999999999999999999999 8999 9743211
Q ss_pred ------ce--Eeccc------cCCCcchhhh------------------hccCCCc--ccccccchHHHHHHHHHHHHHH
Q 005892 80 ------GI--WMARC------AGIEPCTLIM------------------DLEGTDG--RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ------gi--~~~~~------~~~~~~~~vl------------------d~~g~~~--~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+ .++.. ...+++.+.+ +..|+.. .......+++|+|||++|+||+
T Consensus 74 ~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 74 APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred CCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 11 11110 0111222211 1122221 1112334677999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCC-CcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-KTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~-g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
++||||||+++||+.. +..+.+.|.++.++. |+|+|+||||++++..+|+++++|.+ |+++..|++.++
T Consensus 154 ~~P~llLLDEP~s~LD~~~------r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~-G~i~~~g~~~~~ 226 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANI------RANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKD-GRLAAHGEPQAL 226 (362)
T ss_pred cCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 9999999999999998 999999999998765 89999999999999989999999988 999999999988
Q ss_pred cCCc
Q 005892 202 HMET 205 (671)
Q Consensus 202 ~~~~ 205 (671)
+..+
T Consensus 227 ~~~p 230 (362)
T TIGR03258 227 YDAP 230 (362)
T ss_pred HhCc
Confidence 7543
No 42
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.3e-26 Score=250.79 Aligned_cols=182 Identities=12% Similarity=0.122 Sum_probs=141.2
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
+++|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~IaGl~----~p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTI--YKGEIFALLGASGCGKSTLLRMLAGFE----QPTAGQIMLDGVDLSHVP 87 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCCCC
Confidence 457999999999964 35889999999 999999999999999999999999999 89999743211
Q ss_pred ------ceEeccc------cCCCcchhhh------------------hccCCCcc--cccccchHHHHHHHHHHHHHH--
Q 005892 80 ------GIWMARC------AGIEPCTLIM------------------DLEGTDGR--ERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ------gi~~~~~------~~~~~~~~vl------------------d~~g~~~~--~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
++.++.. ...+++.+.+ +..|+... ......+++|+|||+||+|++
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 1111110 0011222111 11122111 111234677999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++||||||+++||+.. +..+.+.++++.++.|.|+|+||||.+++..++|++++|.+ |+|+..|++.+++.+
T Consensus 168 P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~-G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 168 PKLLLLDEPMGALDKKL------RDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR-GKFVQIGEPEEIYEH 240 (377)
T ss_pred CCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeC-CEEEEEcCHHHHHhC
Confidence 9999999999999998 99999999988776799999999999999889999999988 999999999888754
No 43
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=2.6e-26 Score=243.93 Aligned_cols=179 Identities=11% Similarity=0.138 Sum_probs=138.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~l~G~NGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTI--ARGECFGLLGPNGAGKSTIARMLLGMI----SPDRGKITVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECcccHH
Confidence 47999999999964 36899999999 999999999999999999999999999 79999743211
Q ss_pred ----ce-EeccccCC-------Ccchh------------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH--
Q 005892 80 ----GI-WMARCAGI-------EPCTL------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ----gi-~~~~~~~~-------~~~~~------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
.+ ++...... ++..+ +++..++.. .......+++|+||++||+|++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 01 11111010 11110 011112221 1112334677999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
++|||||||+|||+.. +..+.+++.++.++ |.|||++|||++++...|++++++.+ |+++..|++.++..
T Consensus 154 p~lllLDEPt~gLD~~~------~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHA------RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLES-GRKIAEGRPHALID 224 (303)
T ss_pred CCEEEEeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999999999999 99999999999764 99999999999999888999999988 99999998877643
No 44
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.6e-26 Score=234.80 Aligned_cols=177 Identities=18% Similarity=0.150 Sum_probs=134.9
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDV--RRGEILAIIGPSGSGKSTLLRLIVGLL----RPDSGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEccccChhh
Confidence 578999999954 36899999999 999999999999999999999999999 79999742111
Q ss_pred ------ce-EeccccCC-------Ccchhh-------------------hhccCCCcc--cccccchHHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCAGI-------EPCTLI-------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ------gi-~~~~~~~~-------~~~~~v-------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL 124 (671)
.+ ++...... ++..+. ++..|+... ......+++|+||++||+|+
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 01 01100000 011100 111122111 11123467799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++|||||||++||+.. +..+++++.++.++.|+|||+||||++++...|++++++.+ |+++..|++.++
T Consensus 152 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~-G~i~~~g~~~~~ 224 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIA------SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYD-GKIVAEGTPEEL 224 (235)
T ss_pred hcCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEEC-CeEEEecCHHHH
Confidence 9 9999999999999999 99999999998764589999999999988888999999988 999999987765
Q ss_pred c
Q 005892 202 H 202 (671)
Q Consensus 202 ~ 202 (671)
.
T Consensus 225 ~ 225 (235)
T cd03261 225 R 225 (235)
T ss_pred c
Confidence 4
No 45
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.6e-26 Score=241.03 Aligned_cols=183 Identities=15% Similarity=0.128 Sum_probs=141.5
Q ss_pred eEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
+|+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i--~~Ge~~~i~G~nGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 75 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEI--EDGEFVGLIGHTGSGKSTLIQHLNGLL----KPTSGKIIIDGVDITDKK 75 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCccEEEECCEECCCcC
Confidence 599999999996421 136999999999 999999999999999999999999999 89999742111
Q ss_pred ----------ceEeccc-------cCCCcch------------------hhhhccCCC--c--ccccccchHHHHHHHHH
Q 005892 80 ----------GIWMARC-------AGIEPCT------------------LIMDLEGTD--G--RERGEDDTAFEKQSALF 120 (671)
Q Consensus 80 ----------gi~~~~~-------~~~~~~~------------------~vld~~g~~--~--~~r~~~~~~~qrQrv~i 120 (671)
++.++.. ...+++. .+++..|+. . .......+++|+||++|
T Consensus 76 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 76 VKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred ccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence 1111110 0001111 112223443 1 11224457789999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
|+|++ ++||+||||++||+.. +..+++++.++.++.|+|||+||||++++...|++++++.+ |+++..|+
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~-G~i~~~g~ 228 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKG------RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK-GKCELQGT 228 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECC
Confidence 99999 9999999999999999 99999999999765699999999999998888999999988 99999999
Q ss_pred cccccCC
Q 005892 198 KPQAHME 204 (671)
Q Consensus 198 ~~e~~~~ 204 (671)
+.+++..
T Consensus 229 ~~~~~~~ 235 (287)
T PRK13637 229 PREVFKE 235 (287)
T ss_pred HHHHHhC
Confidence 8877653
No 46
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.93 E-value=3.7e-26 Score=232.92 Aligned_cols=178 Identities=13% Similarity=0.159 Sum_probs=133.9
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSV--KQGEIVGLLGPNGAGKTTTFYMIVGLV----KPDSGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEe--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEecccCCHhH
Confidence 578999999964 36899999999 999999999999999999999999999 79999742110
Q ss_pred ----ce-EeccccCC-------Ccchhhhh------------------ccCCCc--ccccccchHHHHHHHHHHHHHH--
Q 005892 80 ----GI-WMARCAGI-------EPCTLIMD------------------LEGTDG--RERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ----gi-~~~~~~~~-------~~~~~vld------------------~~g~~~--~~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
.+ ++...... ++..+... ..|+.. .......+.+|+||++||+|++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 01 01100000 01111000 011111 0111234566999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++|||||||++||+.. +..+.+++.++.+. |+|+|++|||++.+...|++++++.+ |+++..|+++++...
T Consensus 152 p~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~~~ 223 (232)
T cd03218 152 PKFLLLDEPFAGVDPIA------VQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYE-GKVLAEGTPEEIAAN 223 (232)
T ss_pred CCEEEecCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEEeCHHHhhcC
Confidence 9999999999999999 99999999998764 89999999999988888999999988 999998887765543
No 47
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.93 E-value=4.4e-26 Score=235.91 Aligned_cols=189 Identities=14% Similarity=0.164 Sum_probs=142.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--ce-Eec
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GI-WMA 84 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--gi-~~~ 84 (671)
++|++.|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+ .+ ++.
T Consensus 3 ~~l~~~~l~~~~~~---~~vl~~vs~~i--~~Ge~~~I~G~NGsGKSTLl~~i~Gl~----~p~~G~i~~~~~~~i~~v~ 73 (251)
T PRK09544 3 SLVSLENVSVSFGQ---RRVLSDVSLEL--KPGKILTLLGPNGAGKSTLVRVVLGLV----APDEGVIKRNGKLRIGYVP 73 (251)
T ss_pred cEEEEeceEEEECC---ceEEEeEEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCccCEEEec
Confidence 47999999999964 36899999999 999999999999999999999999999 89999753221 11 111
Q ss_pred cccCCCcc--------------------hhhhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhccccccCCCh
Q 005892 85 RCAGIEPC--------------------TLIMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGR 139 (671)
Q Consensus 85 ~~~~~~~~--------------------~~vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~ 139 (671)
........ ..+++..|+... ......+.+|+||++||+|++ ++||+||||++||+
T Consensus 74 q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 153 (251)
T PRK09544 74 QKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153 (251)
T ss_pred cccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 11110000 001112222211 112334677999999999999 99999999999999
Q ss_pred hhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCCccccchhcc
Q 005892 140 EQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNV 213 (671)
Q Consensus 140 ~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~~l~~~f~~ 213 (671)
.. +..++++|.++.++.|.|||+||||++++...|++++++ + |+|+..|+++++.....+.++|+.
T Consensus 154 ~~------~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l-~-~~i~~~g~~~~~~~~~~~~~~~~~ 219 (251)
T PRK09544 154 NG------QVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL-N-HHICCSGTPEVVSLHPEFISMFGP 219 (251)
T ss_pred HH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-C-CceEeeCCHHHHhCCHHHHHHhCC
Confidence 98 999999999987655899999999999988889998888 4 579999988877655555555543
No 48
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.5e-26 Score=233.54 Aligned_cols=181 Identities=11% Similarity=0.116 Sum_probs=139.0
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
|++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~~~l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~ 71 (241)
T PRK14250 1 MNEIEFKEVSYSSFG---KEILKDISVKF--EGGAIYTIVGPSGAGKSTLIKLINRLI----DPTEGSILIDGVDIKTID 71 (241)
T ss_pred CceEEEEeEEEEeCC---eeeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEhhhcC
Confidence 457999999999954 36899999999 999999999999999999999999998 79999742111
Q ss_pred ------ceE-eccccC------CCcch--------------hhhhccCCCc---ccccccchHHHHHHHHHHHHHH---H
Q 005892 80 ------GIW-MARCAG------IEPCT--------------LIMDLEGTDG---RERGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 80 ------gi~-~~~~~~------~~~~~--------------~vld~~g~~~---~~r~~~~~~~qrQrv~iAlAL~---e 126 (671)
.+. +..... .++.. .+++..|+.. .......+.+|+||+++|+|++ +
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 72 VIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred hHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 011 010000 00000 0112223321 1122345678999999999999 9
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
+||+||||++||+.. +..+.+.+.++.++.|.|||++|||++.+...|++++++.+ |+++..|++.+++.
T Consensus 152 llllDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 221 (241)
T PRK14250 152 VLLLDEPTSALDPTS------TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNK-GILVEYAKTYDFFT 221 (241)
T ss_pred EEEEeCCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeC-CEEEEeCCHHHHhc
Confidence 999999999999998 99999999998765589999999999998888999998888 99999988877654
No 49
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.9e-26 Score=244.16 Aligned_cols=184 Identities=17% Similarity=0.098 Sum_probs=141.5
Q ss_pred ceEEEEeeeEEecccc-------ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-
Q 005892 8 CSTQLIDGDGTFNVSG-------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~-------l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~- 79 (671)
++|+++|+++.|.... ...++.+|++.+ .+|++++|+|+||||||||+++|+|++ +|++|++...+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~IvG~sGsGKSTLl~~l~gl~----~p~~G~i~~~g~ 77 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTL--ERGKTLAVVGESGCGKSTLARLLTMIE----TPTGGELYYQGQ 77 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEE--CCCCEEEEECCCCCcHHHHHHHHHcCC----CCCCcEEEECCE
Confidence 5799999999995311 136899999999 999999999999999999999999999 78999742111
Q ss_pred -----------------ceEecccc-CCCcc--------------------------hhhhhccCCCc---ccccccchH
Q 005892 80 -----------------GIWMARCA-GIEPC--------------------------TLIMDLEGTDG---RERGEDDTA 112 (671)
Q Consensus 80 -----------------gi~~~~~~-~~~~~--------------------------~~vld~~g~~~---~~r~~~~~~ 112 (671)
++.++... ...+. .-+++..|+.. .......++
T Consensus 78 ~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 78 DLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSG 157 (327)
T ss_pred EcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCH
Confidence 01111100 00000 00111223321 112234567
Q ss_pred HHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcC
Q 005892 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (671)
Q Consensus 113 ~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~ 189 (671)
+|+||++||+||+ ++||+||||++||+.. +..++++|.++.++.|+|+||||||+..+..+|+++++|.+
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~- 230 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSV------QAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL- 230 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-
Confidence 7999999999999 9999999999999998 99999999999876799999999999999888999999988
Q ss_pred CeEEEecCcccccCC
Q 005892 190 QKIWDSVPKPQAHME 204 (671)
Q Consensus 190 GkI~~~g~~~e~~~~ 204 (671)
|+|++.|++.+++.+
T Consensus 231 G~ive~g~~~~~~~~ 245 (327)
T PRK11308 231 GRCVEKGTKEQIFNN 245 (327)
T ss_pred CEEEEECCHHHHhcC
Confidence 999999998877654
No 50
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.4e-26 Score=230.12 Aligned_cols=175 Identities=10% Similarity=0.099 Sum_probs=132.4
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRV--RRGEIFGLLGPNGAGKTTTIKMLTTLL----KPTSGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEecCcChHHH
Confidence 578999999954 36899999999 999999999999999999999999998 79999742111
Q ss_pred --ce-EeccccCC-------Ccchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---H
Q 005892 80 --GI-WMARCAGI-------EPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 80 --gi-~~~~~~~~-------~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---e 126 (671)
.+ ++...... ++..+. ++..|+... ......+++|+||++||+|++ +
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 01 00000000 011110 111122110 111234567999999999999 9
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+||+||||++||+.. +..+.+++.++.++.|+|+|++|||++++...|++++++.+ |+++..+++.+
T Consensus 152 llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~ 218 (220)
T cd03265 152 VLFLDEPTIGLDPQT------RAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDH-GRIIAEGTPEE 218 (220)
T ss_pred EEEEcCCccCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEEeCChHH
Confidence 999999999999999 99999999998765589999999999999888999998888 99998877543
No 51
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.5e-26 Score=238.24 Aligned_cols=187 Identities=15% Similarity=0.200 Sum_probs=140.6
Q ss_pred eEEEEeeeEEeccc-cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccC-CCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF-REMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~-~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f-~~m~p~sG~~q~~~------- 79 (671)
.++++|++..|... +...++.+|+|.+ .+||++||+|.||||||||.+.|+|++. +.....+|++...+
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i--~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~ 78 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFEL--KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEE--cCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC
Confidence 37899999999542 2457999999999 9999999999999999999999999992 00011334421110
Q ss_pred --------c--e--Eeccc-cCCCc---------------------------chhhhhccCCCcccc-----cccchHHH
Q 005892 80 --------G--I--WMARC-AGIEP---------------------------CTLIMDLEGTDGRER-----GEDDTAFE 114 (671)
Q Consensus 80 --------g--i--~~~~~-~~~~~---------------------------~~~vld~~g~~~~~r-----~~~~~~~q 114 (671)
| | .++.. ...++ ..-.++..|++..++ ....+++|
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGM 158 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGM 158 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcH
Confidence 0 0 00000 00011 111223334443321 12345679
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+|||+||+|++ ++||.||||++||... +.+|+++|++|.++.|+++||||||+..+..+||+++||.. |+
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt~------QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa-G~ 231 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVTV------QAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA-GR 231 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC-cE
Confidence 99999999999 9999999999999998 99999999999988899999999999999999999999998 99
Q ss_pred EEEecCcccccCC
Q 005892 192 IWDSVPKPQAHME 204 (671)
Q Consensus 192 I~~~g~~~e~~~~ 204 (671)
|++.|+..+++.+
T Consensus 232 iVE~g~~~~i~~~ 244 (316)
T COG0444 232 IVEEGPVEEIFKN 244 (316)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999888764
No 52
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.3e-26 Score=235.79 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=137.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
.+|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 4 PLLSVSGLMMRFGG---LLAVNNVNLEV--REQEIVSLIGPNGAGKTTVFNCLTGFY----KPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred ceEEEeeEEEEECC---EEEEEeeeeEE--cCCeEEEEECCCCCCHHHHHHHHhCCc----CCCcceEEECCEECCCCCH
Confidence 36999999999954 36899999999 999999999999999999999999999 79999742111
Q ss_pred ------ceE-eccccCCCcchhhhh----------------------------------------ccCCCc--ccccccc
Q 005892 80 ------GIW-MARCAGIEPCTLIMD----------------------------------------LEGTDG--RERGEDD 110 (671)
Q Consensus 80 ------gi~-~~~~~~~~~~~~vld----------------------------------------~~g~~~--~~r~~~~ 110 (671)
++. +.......+...+.+ ..|+.. .......
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 111 111111000001111 011111 0111223
Q ss_pred hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh
Q 005892 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~ 187 (671)
+.+|+||++||+|++ ++||+||||++||+.. +..+.++|.++.++.|+|||++||+++.+...|++++++.
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 228 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKE------TKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN 228 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH------HHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 556999999999999 9999999999999999 9999999999976558999999999999988899999988
Q ss_pred cCCeEEEecCcccccCC
Q 005892 188 DIQKIWDSVPKPQAHME 204 (671)
Q Consensus 188 ~~GkI~~~g~~~e~~~~ 204 (671)
+ |+++..|+++++...
T Consensus 229 ~-g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 229 Q-GTPLANGTPEEIRNN 244 (255)
T ss_pred C-CeEEecCCHHHHhhC
Confidence 8 999999987766543
No 53
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6e-26 Score=232.38 Aligned_cols=181 Identities=14% Similarity=0.114 Sum_probs=136.8
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
|++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~ 73 (237)
T PRK11614 3 KVMLSFDKVSAHYGK---IQALHEVSLHI--NQGEIVTLIGANGAGKTTLLGTLCGDP----RATSGRIVFDGKDITDWQ 73 (237)
T ss_pred ccEEEEEeEEEeeCC---ceeeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCCceEEECCEecCCCC
Confidence 357999999999954 36899999999 999999999999999999999999999 79999743111
Q ss_pred -------ceEe-ccccCCCcchhhhhcc------------------------CCCc--ccccccchHHHHHHHHHHHHHH
Q 005892 80 -------GIWM-ARCAGIEPCTLIMDLE------------------------GTDG--RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 -------gi~~-~~~~~~~~~~~vld~~------------------------g~~~--~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+.+ .......+...+.+.. ++.. .......+.+|+||++||++++
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHH
Confidence 0111 0000000000111100 0000 0011123456999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++||+||||++||+.. +..+.+++.++.++ |.|||++|||++++...|++++++.+ |+++..|+++++.
T Consensus 154 ~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 225 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPII------IQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLEN-GHVVLEDTGDALL 225 (237)
T ss_pred hCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeC-CEEEeeCCHHHHh
Confidence 9999999999999998 99999999998765 89999999999988888999999988 9999999987776
Q ss_pred CC
Q 005892 203 ME 204 (671)
Q Consensus 203 ~~ 204 (671)
.+
T Consensus 226 ~~ 227 (237)
T PRK11614 226 AN 227 (237)
T ss_pred cC
Confidence 43
No 54
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.93 E-value=4.3e-26 Score=234.03 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=134.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
||+++|+++.|+. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 1 MLEVENLSKVYPN--GKQALKNINLNI--NPGEFVAIIGPSGAGKSTLLRCINRLV----EPSSGSILLEGTDITKLRGK 72 (243)
T ss_pred CeEEEeeeeecCC--CcceeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----CCCccEEEECCEEhhhCCHH
Confidence 4889999999962 136899999999 999999999999999999999999999 799997421110
Q ss_pred --------e-EeccccCCCcchhhhhc---------------------------------cCCCc--ccccccchHHHHH
Q 005892 81 --------I-WMARCAGIEPCTLIMDL---------------------------------EGTDG--RERGEDDTAFEKQ 116 (671)
Q Consensus 81 --------i-~~~~~~~~~~~~~vld~---------------------------------~g~~~--~~r~~~~~~~qrQ 116 (671)
+ ++.......+...+.+. .|+.. .......+++|+|
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQ 152 (243)
T ss_pred HHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 0 00000000000111111 11111 0111234566999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|++||+|++ ++||+||||++||+.. +..+.++|.++.++.|+|||+||||++.+...|++++++.+ |+++
T Consensus 153 rv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~-G~i~ 225 (243)
T TIGR02315 153 RVAIARALAQQPDLILADEPIASLDPKT------SKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA-GEIV 225 (243)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC-CEEE
Confidence 999999999 9999999999999998 99999999998765589999999999998888999999888 9999
Q ss_pred EecCcccc
Q 005892 194 DSVPKPQA 201 (671)
Q Consensus 194 ~~g~~~e~ 201 (671)
..|+++++
T Consensus 226 ~~~~~~~~ 233 (243)
T TIGR02315 226 FDGAPSEL 233 (243)
T ss_pred ecCCHHHh
Confidence 98887664
No 55
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.1e-26 Score=240.75 Aligned_cols=183 Identities=15% Similarity=0.132 Sum_probs=140.1
Q ss_pred eEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
+|+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i--~~Ge~v~iiG~nGsGKSTLl~~L~Gl~----~p~~G~i~~~g~~~~~~~ 75 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEI--NQGEFIAIIGQTGSGKTTFIEHLNALL----LPDTGTIEWIFKDEKNKK 75 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEE--eCCCEEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEEeceeccccc
Confidence 599999999996421 125899999999 999999999999999999999999999 89999843210
Q ss_pred --------------------------------ceEeccc-cC------CCcchh------------------hhhccCCC
Q 005892 80 --------------------------------GIWMARC-AG------IEPCTL------------------IMDLEGTD 102 (671)
Q Consensus 80 --------------------------------gi~~~~~-~~------~~~~~~------------------vld~~g~~ 102 (671)
++.++.. .. .+++.+ .++..|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred ccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 1111110 00 001111 11222332
Q ss_pred c---ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcc
Q 005892 103 G---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 103 ~---~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
. .......+++|+||++||++++ ++|||||||++||+.. +..+.+++.++.+. |+|||+||||++.+
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivtHd~~~~ 228 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG------VKEILEIFDNLNKQ-GKTIILVTHDLDNV 228 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeeCHHHH
Confidence 1 1122345677999999999999 9999999999999998 99999999999754 99999999999998
Q ss_pred cccccchhhhhcCCeEEEecCcccccCCc
Q 005892 177 PLENLEPVLREDIQKIWDSVPKPQAHMET 205 (671)
Q Consensus 177 ~~~~~~~~ll~~~GkI~~~g~~~e~~~~~ 205 (671)
...|++++++.+ |+|+..|++.+++.+.
T Consensus 229 ~~~adrv~vl~~-G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 229 LEWTKRTIFFKD-GKIIKDGDTYDILSDN 256 (305)
T ss_pred HHhCCEEEEEEC-CEEEEECCHHHHhcCH
Confidence 888999999988 9999999988876543
No 56
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.1e-26 Score=235.63 Aligned_cols=186 Identities=14% Similarity=0.152 Sum_probs=139.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|++++|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 72 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSL--PTGKITALIGPNGCGKSTLLKCFARLL----TPQSGTVFLGDKPISMLSSR 72 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEE--cCCcEEEEECCCCCCHHHHHHHHhCCc----CCCCcEEEECCEEhHHCCHH
Confidence 6999999999964 36899999999 999999999999999999999999998 79999742111
Q ss_pred ----ceE-eccccCCCcchhhhh-----------------------------ccCCCc--ccccccchHHHHHHHHHHHH
Q 005892 80 ----GIW-MARCAGIEPCTLIMD-----------------------------LEGTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ----gi~-~~~~~~~~~~~~vld-----------------------------~~g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.+. +.......+...+.+ ..|+.. .......+.+|+||+++|+|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred HHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 011 010000000001111 111111 11112345679999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++||+||||++||+.. +..+.++|.++.++ |+|+|++|||++.+...|++++++.+ |+++..|++++
T Consensus 153 l~~~p~llllDEP~~~LD~~~------~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~ 224 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINH------QVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLAN-GHVMAQGTPEE 224 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEEC-CeEEEEcCHHH
Confidence 99 9999999999999998 99999999998754 89999999999999888999999988 99999888777
Q ss_pred ccCCccccchh
Q 005892 201 AHMETPLSEFF 211 (671)
Q Consensus 201 ~~~~~~l~~~f 211 (671)
+.....+.++|
T Consensus 225 ~~~~~~~~~~~ 235 (255)
T PRK11231 225 VMTPGLLRTVF 235 (255)
T ss_pred hcCHHHHHHHh
Confidence 65443444444
No 57
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.1e-26 Score=238.38 Aligned_cols=183 Identities=13% Similarity=0.107 Sum_probs=137.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+......++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHV--KQGEWLSIIGHNGSGKSTTVRLIDGLL----EAESGQIIIDGDLLTEENV 76 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEECCcCcH
Confidence 4799999999996421235899999999 999999999999999999999999999 89999742111
Q ss_pred -------ceEecccc-C------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH
Q 005892 80 -------GIWMARCA-G------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 -------gi~~~~~~-~------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~ 125 (671)
++.++... . .+++.+. ++..|+... ......+++|+||++||+|++
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 11111100 0 0011110 111122111 111234567999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++||+||||++||+.. +..+++++.++.++.|+|||+||||++.+. .|++++++.+ |+++..|++.+++
T Consensus 157 ~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~-G~i~~~g~~~~~~ 228 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEG------RLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKN-GQVESTSTPRELF 228 (279)
T ss_pred cCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999998 999999999997656999999999998874 6888888887 9999999987766
Q ss_pred CC
Q 005892 203 ME 204 (671)
Q Consensus 203 ~~ 204 (671)
..
T Consensus 229 ~~ 230 (279)
T PRK13650 229 SR 230 (279)
T ss_pred cC
Confidence 54
No 58
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.1e-26 Score=229.09 Aligned_cols=171 Identities=15% Similarity=0.169 Sum_probs=129.3
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTV--EPGEFLALLGPSGCGKTTLLRLIAGLE----RPDSGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcCcCchhh
Confidence 578999999954 36899999999 999999999999999999999999999 79999742111
Q ss_pred -ceE-eccccC-------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---HH
Q 005892 80 -GIW-MARCAG-------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 80 -gi~-~~~~~~-------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---ev 127 (671)
.+. +..... .++..+. ++..|+... ......+++|+||++||+|++ ++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 111 111000 0111110 111122111 111234567999999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
||+||||++||+.. +..+++++.++.++.|.|||++|||++++...|++++++.+ |+++..|
T Consensus 152 lllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKL------REELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999998 99999999998764589999999999988888999998888 9987654
No 59
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=5.1e-26 Score=232.40 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=154.9
Q ss_pred cceEEEEeeeEEecccc------ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc
Q 005892 7 CCSTQLIDGDGTFNVSG------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG 80 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~------l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g 80 (671)
+++++++|+++.|.... ...++.+|+|.+ .+|+++||+|.||||||||-|+|.|+. .|++|+
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i--~~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~------ 69 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSI--KEGETLGLVGESGCGKSTLGRLILGLE----EPTSGE------ 69 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEE--cCCCEEEEEecCCCCHHHHHHHHHcCc----CCCCce------
Confidence 46899999999995421 247889999999 999999999999999999999999999 899996
Q ss_pred eEeccccC--------CCcchhhhhccCCCccc---ccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChh
Q 005892 81 IWMARCAG--------IEPCTLIMDLEGTDGRE---RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKP 146 (671)
Q Consensus 81 i~~~~~~~--------~~~~~~vld~~g~~~~~---r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~ 146 (671)
+.+.+... .+...-.++..|++... .....+++|+||+.||+|++ +++++|||+++||...
T Consensus 70 i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi----- 144 (268)
T COG4608 70 ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV----- 144 (268)
T ss_pred EEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH-----
Confidence 44443211 11233445556655422 22345788999999999999 9999999999999877
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCCccccchhcccccccc
Q 005892 147 LLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALS 219 (671)
Q Consensus 147 ~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~~l~~~f~~~~~~lp 219 (671)
+.++.++|.++.++.|.|.+|+|||+..+...|+++++|.. |+|++.|+..+++. ...+.+-..-+.+.|
T Consensus 145 -qaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~-G~iVE~g~~~~~~~-~p~HpYTk~Ll~a~p 214 (268)
T COG4608 145 -QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL-GKIVEIGPTEEVFS-NPLHPYTKALLSAVP 214 (268)
T ss_pred -HHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEec-CceeEecCHHHHhh-CCCCHHHHHHHHhCC
Confidence 99999999999998999999999999999999999999988 99999999999886 333334333334444
No 60
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8e-26 Score=238.75 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=141.1
Q ss_pred eEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
.|+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~ 75 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSI--PSGSYVAIIGHTGSGKSTLLQHLNGLL----QPTSGTVTIGERVITAGK 75 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCEECcccc
Confidence 589999999995321 135999999999 999999999999999999999999999 79999742111
Q ss_pred ------------ceEecccc-C------CCcchh------------------hhhccCCC-c--ccccccchHHHHHHHH
Q 005892 80 ------------GIWMARCA-G------IEPCTL------------------IMDLEGTD-G--RERGEDDTAFEKQSAL 119 (671)
Q Consensus 80 ------------gi~~~~~~-~------~~~~~~------------------vld~~g~~-~--~~r~~~~~~~qrQrv~ 119 (671)
+..++... . .+++.+ +++..|+. . .......+.+|+||++
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 76 KNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred ccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence 11111100 0 001110 11223443 1 1123445678999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
||++++ ++||+||||++||+.. +..+++++.++.++.|.|||+||||++.+...|++++++.+ |+|+..|
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~------~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~-G~i~~~g 228 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKG------RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHK-GTVFLQG 228 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999999 99999999999766699999999999999888999999988 9999999
Q ss_pred CcccccCC
Q 005892 197 PKPQAHME 204 (671)
Q Consensus 197 ~~~e~~~~ 204 (671)
++.+++..
T Consensus 229 ~~~~~~~~ 236 (290)
T PRK13634 229 TPREIFAD 236 (290)
T ss_pred CHHHHhcC
Confidence 98877654
No 61
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.93 E-value=6.7e-26 Score=243.41 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=141.3
Q ss_pred cceEEEEeeeEEeccc----------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeee
Q 005892 7 CCSTQLIDGDGTFNVS----------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~----------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q 76 (671)
.++|+++|+++.|... +...++.++++.+ .+|++++|+|+||||||||+++|+|+. +|++|++.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~lvG~sGsGKSTLlk~i~Gl~----~p~~G~I~ 79 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRL--YEGETLGVVGESGCGKSTFARAIIGLV----KATDGEVA 79 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHHCCC----CCCCcEEE
Confidence 4689999999999531 1246899999999 999999999999999999999999999 79999742
Q ss_pred ccC----------------ce--Eecccc-CCCcchhh---------------------------hhccCCCc---cccc
Q 005892 77 TTK----------------GI--WMARCA-GIEPCTLI---------------------------MDLEGTDG---RERG 107 (671)
Q Consensus 77 ~~~----------------gi--~~~~~~-~~~~~~~v---------------------------ld~~g~~~---~~r~ 107 (671)
..+ .+ .++... ...+...+ ++..|+.. ....
T Consensus 80 ~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p 159 (331)
T PRK15079 80 WLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159 (331)
T ss_pred ECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence 111 11 111100 01110001 11112211 1112
Q ss_pred ccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchh
Q 005892 108 EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ 184 (671)
...+++|+||++||+|++ ++||+||||++||+.. +..++++|.++.++.|.|+||||||++.+..+|++++
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~ 233 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSI------QAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVL 233 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 335677999999999999 9999999999999998 9999999999977669999999999999998899999
Q ss_pred hhhcCCeEEEecCcccccCC
Q 005892 185 LREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 185 ll~~~GkI~~~g~~~e~~~~ 204 (671)
+|.+ |+|++.|++.+++.+
T Consensus 234 vl~~-G~ive~g~~~~i~~~ 252 (331)
T PRK15079 234 VMYL-GHAVELGTYDEVYHN 252 (331)
T ss_pred EEEC-CEEEEEcCHHHHHcC
Confidence 9988 999999998877654
No 62
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.7e-26 Score=237.43 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=135.8
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
+++|+++|+++.|... ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 2 ~~~l~~~~l~~~~~~~--~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 73 (274)
T PRK13647 2 DNIIEVEDLHFRYKDG--TKALKGLSLSI--PEGSKTALLGPNGAGKSTLLLHLNGIY----LPQRGRVKVMGREVNAEN 73 (274)
T ss_pred CceEEEEEEEEEeCCC--CeeeeeEEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEECCEECCCCC
Confidence 4579999999999532 36899999999 999999999999999999999999999 89999743211
Q ss_pred --------ceEeccc-------cCCCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHHH
Q 005892 80 --------GIWMARC-------AGIEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 --------gi~~~~~-------~~~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL 124 (671)
++.++.. ...++..+ +++..|+... ......+++|+||++||+|+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 1111110 00001111 0111122111 11123456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+ ++||+||||++||+.. +..+++++.++.++ |.|||++|||++.+...|++++++.+ |+++..|+++.
T Consensus 154 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 224 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRG------QETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKE-GRVLAEGDKSL 224 (274)
T ss_pred HcCCCEEEEECCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 9 9999999999999999 99999999999765 99999999999998888999999988 99999998643
No 63
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=6.9e-26 Score=243.28 Aligned_cols=188 Identities=13% Similarity=0.095 Sum_probs=143.3
Q ss_pred CCCcceEEEEeeeEEeccc-cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC---CCeeeccC
Q 005892 4 GEECCSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQTTK 79 (671)
Q Consensus 4 ~~~~~~I~i~nlsk~y~~~-~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~---sG~~q~~~ 79 (671)
...+++|+++|+++.|... +...++.+++|.+ .+|++++|+|+||||||||+++|+|+. +|. +|++...+
T Consensus 7 ~~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~ivG~sGsGKSTL~~~l~Gl~----~p~~~~sG~I~~~G 80 (330)
T PRK09473 7 QQADALLDVKDLRVTFSTPDGDVTAVNDLNFSL--RAGETLGIVGESGSGKSQTAFALMGLL----AANGRIGGSATFNG 80 (330)
T ss_pred CCCCceEEEeCeEEEEecCCCCEEEEeeeEEEE--cCCCEEEEECCCCchHHHHHHHHHcCC----CCCCCCCeEEEECC
Confidence 3455689999999999532 1246899999999 999999999999999999999999999 674 78642110
Q ss_pred -----------------ce--Eecccc-CCCcch--------------------------hhhhccCCCcc-----cccc
Q 005892 80 -----------------GI--WMARCA-GIEPCT--------------------------LIMDLEGTDGR-----ERGE 108 (671)
Q Consensus 80 -----------------gi--~~~~~~-~~~~~~--------------------------~vld~~g~~~~-----~r~~ 108 (671)
.+ .++... ...+.. -.++..|++.. ....
T Consensus 81 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~ 160 (330)
T PRK09473 81 REILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH 160 (330)
T ss_pred EECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc
Confidence 11 111100 000000 01122233321 1223
Q ss_pred cchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhh
Q 005892 109 DDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~l 185 (671)
..+++|+||++||+|++ ++||+||||++||+.. +..++++|.++.++.|+|+||||||++.+..+|+++++
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~v 234 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTV------QAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLV 234 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 45788999999999999 9999999999999998 99999999999876799999999999999888999999
Q ss_pred hhcCCeEEEecCcccccCC
Q 005892 186 REDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 186 l~~~GkI~~~g~~~e~~~~ 204 (671)
|.+ |+|++.|++.+++.+
T Consensus 235 m~~-G~ive~g~~~~i~~~ 252 (330)
T PRK09473 235 MYA-GRTMEYGNARDVFYQ 252 (330)
T ss_pred EEC-CEEEEECCHHHHHhC
Confidence 988 999999998887654
No 64
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.8e-26 Score=232.55 Aligned_cols=185 Identities=12% Similarity=0.120 Sum_probs=137.6
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~~sl~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 2 ATLTAKNLAKAYKG---RRVVEDVSLTV--NSGEIVGLLGPNGAGKTTTFYMVVGIV----PRDAGNIIIDDEDISLLPL 72 (241)
T ss_pred ceEEEeCcEEEeCC---EEEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCCH
Confidence 47999999999964 36899999999 999999999999999999999999999 79999742111
Q ss_pred ------ceEe-ccccCCCcchhhhhc--------------------------cCCCc--ccccccchHHHHHHHHHHHHH
Q 005892 80 ------GIWM-ARCAGIEPCTLIMDL--------------------------EGTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ------gi~~-~~~~~~~~~~~vld~--------------------------~g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
++.+ .......+...+.+. .|+.. .......+.+|+||+++|+|+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 1111 000000000011111 01111 011122356699999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++||+||||++||+.. +..+.+++.++.+ .|.|+|++||+++.+...|++++++.+ |+++..|+++++
T Consensus 153 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~-G~i~~~~~~~~~ 224 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPIS------VIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQ-GHLIAHGTPTEI 224 (241)
T ss_pred hcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeC-CeEEeeCCHHHH
Confidence 9 9999999999999998 9999999999875 489999999999988888999988887 999999987776
Q ss_pred cCCccccc
Q 005892 202 HMETPLSE 209 (671)
Q Consensus 202 ~~~~~l~~ 209 (671)
.....+.+
T Consensus 225 ~~~~~~~~ 232 (241)
T PRK10895 225 LQDEHVKR 232 (241)
T ss_pred hcChhHhH
Confidence 54333333
No 65
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.92 E-value=7.8e-26 Score=231.50 Aligned_cols=178 Identities=10% Similarity=0.107 Sum_probs=134.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 1 ALEVAGLSFAYGA---RRALDDVSFTV--RPGEFVALLGPNGAGKSTLFSLLTRLY----VAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred CEEEEeeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCEEcccCChh
Confidence 4889999999954 36899999999 999999999999999999999999999 79999742111
Q ss_pred ---ceEe-ccccCC-------Ccchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---
Q 005892 80 ---GIWM-ARCAGI-------EPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 80 ---gi~~-~~~~~~-------~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
.+.+ ...... ++..+. ++..|+.. .......+.+|+||++||+|++
T Consensus 72 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred hhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1111 100000 011110 11112211 1112234567999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
+++|+||||++||+.. +..+.+++.++.++.|.|+|++|||++.+.. |++++++.+ |+++..|++.++..
T Consensus 152 ~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~-G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 152 ALLLLDEPTVGLDPAS------RAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHR-GRVLADGAAAELRG 221 (236)
T ss_pred CEEEEcCCccCCCHHH------HHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeC-CeEEEeCCHHHHHH
Confidence 9999999999999999 9999999999875458999999999998874 888888887 99999888766543
No 66
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.2e-26 Score=244.97 Aligned_cols=183 Identities=13% Similarity=0.163 Sum_probs=139.4
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
||+++|++++|+... ...++.++++.+ .+|++++|+||||||||||+|+|+|+. +|++|++...+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i--~~Gei~~iiG~nGsGKSTLlk~L~Gl~----~p~~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHI--PAGEIFGVIGASGAGKSTLIRCINLLE----RPTSGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCcCCH
Confidence 489999999996211 246899999999 999999999999999999999999999 89999742110
Q ss_pred --------ceE-eccccC-------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHH
Q 005892 80 --------GIW-MARCAG-------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 --------gi~-~~~~~~-------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlA 123 (671)
.+. +..... .++..+. ++..|+... ......+++|+||++||+|
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 111 000000 1111111 111222211 1123356779999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++|||||||++||+.. +..++++|.++.++.|+|||++|||++.+..+|++++++.+ |+++..|++.+
T Consensus 155 L~~~p~iLlLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~-G~i~~~g~~~~ 227 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPAT------TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDA-GRLVEQGTVSE 227 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHH
Confidence 99 9999999999999999 99999999999766689999999999998888999999988 99999998877
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
++..
T Consensus 228 ~~~~ 231 (343)
T PRK11153 228 VFSH 231 (343)
T ss_pred HHhC
Confidence 6543
No 67
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.4e-26 Score=243.20 Aligned_cols=189 Identities=13% Similarity=0.143 Sum_probs=140.3
Q ss_pred cceEEEEeeeEEeccc-cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 7 CCSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~-~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
|++|+++|+++.|... +...++.++++.+ .+|++++|+|+||||||||+++|+|+..+...|++|++...+
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i--~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTL--TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 3579999999999531 1246899999999 999999999999999999999999998211124778632110
Q ss_pred -----------ceE--eccccC-CCc-------ch------------------------hhhhccCCCcc-----ccccc
Q 005892 80 -----------GIW--MARCAG-IEP-------CT------------------------LIMDLEGTDGR-----ERGED 109 (671)
Q Consensus 80 -----------gi~--~~~~~~-~~~-------~~------------------------~vld~~g~~~~-----~r~~~ 109 (671)
.+. ++.... ..+ +. -.++..|+... .....
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~ 158 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYE 158 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchh
Confidence 111 111000 000 00 01111233211 11224
Q ss_pred chHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhh
Q 005892 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (671)
Q Consensus 110 ~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll 186 (671)
.+++|+|||+||+|++ ++||+||||++||+.. +..++++|.++.++.|+|+||||||++.+..+|+++++|
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTT------QAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 5678999999999999 9999999999999998 999999999998766999999999999998899999999
Q ss_pred hcCCeEEEecCcccccCC
Q 005892 187 EDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 187 ~~~GkI~~~g~~~e~~~~ 204 (671)
.+ |+|++.|++.+++.+
T Consensus 233 ~~-G~ive~g~~~~i~~~ 249 (330)
T PRK15093 233 YC-GQTVETAPSKELVTT 249 (330)
T ss_pred EC-CEEEEECCHHHHHhC
Confidence 88 999999998776643
No 68
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.92 E-value=9.7e-26 Score=234.17 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=135.8
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
.++|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 10 ~~~l~i~~l~~~~~~---~~il~~isl~i--~~Ge~~~I~G~NGsGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~~ 80 (257)
T PRK11247 10 GTPLLLNAVSKRYGE---RTVLNQLDLHI--PAGQFVAVVGRSGCGKSTLLRLLAGLE----TPSAGELLAGTAPLAEAR 80 (257)
T ss_pred CCcEEEEEEEEEECC---cceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEHHHhh
Confidence 457999999999964 36899999999 999999999999999999999999999 79999753211
Q ss_pred -ce-EeccccCCCcchhh-------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 80 -GI-WMARCAGIEPCTLI-------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 80 -gi-~~~~~~~~~~~~~v-------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
.+ ++.......+...+ ++..|+.. .......+++|+||++||++++ ++||||||
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEP 160 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEP 160 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 01 11111111010011 11223322 1122345677999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++||+.. +..+.++|.++.++.|.|||+||||++.+...|++++++.+ |+|+..++.+
T Consensus 161 t~~LD~~~------~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (257)
T PRK11247 161 LGALDALT------RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEE-GKIGLDLTVD 219 (257)
T ss_pred CCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEeecccc
Confidence 99999999 99999999998655589999999999988888999988888 9999887654
No 69
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-25 Score=237.72 Aligned_cols=182 Identities=13% Similarity=0.136 Sum_probs=139.2
Q ss_pred eEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
||+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i--~~Ge~v~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~ 74 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEV--KKGSYTALIGHTGSGKSTLLQHLNGLL----QPTEGKVTVGDIVVSSTS 74 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEE--cCCCEEEEECCCCChHHHHHHHHhcCC----CCCCcEEEECCEECcccc
Confidence 489999999996321 125899999999 999999999999999999999999999 89999742110
Q ss_pred ------------ceEeccc--cC-----CCcchh------------------hhhccCCCc---ccccccchHHHHHHHH
Q 005892 80 ------------GIWMARC--AG-----IEPCTL------------------IMDLEGTDG---RERGEDDTAFEKQSAL 119 (671)
Q Consensus 80 ------------gi~~~~~--~~-----~~~~~~------------------vld~~g~~~---~~r~~~~~~~qrQrv~ 119 (671)
++.++.. .. .+++.+ .++..|+.. .......+.+|+||++
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 75 KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred ccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH
Confidence 1111110 00 011111 111223321 1122335677999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
||++++ ++|||||||++||+.. +..+.+++.++.+. |.|||+||||++++...|++++++.+ |+|+..|
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~-G~i~~~g 226 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKA------RIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEK-GHIISCG 226 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999998 99999999999764 99999999999998888999999988 9999999
Q ss_pred CcccccCC
Q 005892 197 PKPQAHME 204 (671)
Q Consensus 197 ~~~e~~~~ 204 (671)
++.+++..
T Consensus 227 ~~~~~~~~ 234 (288)
T PRK13643 227 TPSDVFQE 234 (288)
T ss_pred CHHHHHcC
Confidence 98887654
No 70
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.92 E-value=8.4e-26 Score=236.00 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=138.0
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
.+++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 4 ~~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~ 74 (269)
T PRK11831 4 VANLVDMRGVSFTRGN---RCIFDNISLTV--PRGKITAIMGPSGIGKTTLLRLIGGQI----APDHGEILFDGENIPAM 74 (269)
T ss_pred ccceEEEeCeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcccc
Confidence 3457999999999954 36899999999 999999999999999999999999999 79999742111
Q ss_pred ----------ce-EeccccCC-------Ccchhh-------------------hhccCCCcc--cccccchHHHHHHHHH
Q 005892 80 ----------GI-WMARCAGI-------EPCTLI-------------------MDLEGTDGR--ERGEDDTAFEKQSALF 120 (671)
Q Consensus 80 ----------gi-~~~~~~~~-------~~~~~v-------------------ld~~g~~~~--~r~~~~~~~qrQrv~i 120 (671)
.+ ++...... ++..+. ++..|+... ......+++|+||++|
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 75 SRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred ChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 11 11111010 111110 011122110 1112345679999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
|++++ ++|||||||++||+.. +..+.+++.++.++.|.|||+||||++.+...|++++++.+ |+++..|+
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~-G~i~~~g~ 227 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPIT------MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVAD-KKIVAHGS 227 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEEC-CEEEEeCC
Confidence 99999 9999999999999999 99999999999765589999999999998888999888887 99999988
Q ss_pred cccccC
Q 005892 198 KPQAHM 203 (671)
Q Consensus 198 ~~e~~~ 203 (671)
+.+++.
T Consensus 228 ~~~~~~ 233 (269)
T PRK11831 228 AQALQA 233 (269)
T ss_pred HHHHhc
Confidence 766543
No 71
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=1e-25 Score=218.24 Aligned_cols=157 Identities=16% Similarity=0.100 Sum_probs=125.4
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCC
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI 89 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~ 89 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++ .+.+....
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v------~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSV--RRGEVHALLGENGAGKSTLMKILSGLY----KPDSGEI------LVDGKEVS 65 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEE------EECCEECC
Confidence 578999999964 36899999999 999999999999999999999999999 7999953 33322100
Q ss_pred C-cch-hhhhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCc
Q 005892 90 E-PCT-LIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKT 164 (671)
Q Consensus 90 ~-~~~-~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~ 164 (671)
. +.. ......+. ....+.+|+||+++|+|++ +++++|||+++||+.. ++.+.++++++.++ |.
T Consensus 66 ~~~~~~~~~~~i~~-----~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~~~~-~~ 133 (163)
T cd03216 66 FASPRDARRAGIAM-----VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAE------VERLFKVIRRLRAQ-GV 133 (163)
T ss_pred cCCHHHHHhcCeEE-----EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH------HHHHHHHHHHHHHC-CC
Confidence 0 000 00000000 0116788999999999999 9999999999999999 99999999999754 89
Q ss_pred EEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 165 TLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 165 TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
|+|++|||++.+...|++++++.+ |++++
T Consensus 134 tiii~sh~~~~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 134 AVIFISHRLDEVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEEC-CEEEe
Confidence 999999999988888999988887 99864
No 72
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.8e-26 Score=236.52 Aligned_cols=182 Identities=12% Similarity=0.128 Sum_probs=138.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
|.+|+++|+++.|+.. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~~~l~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~i~G~NGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 72 (277)
T PRK13652 1 MHLIETRDLCYSYSGS--KEALNNINFIA--PRNSRIAVIGPNGAGKSTLFRHFNGIL----KPTSGSVLIRGEPITKEN 72 (277)
T ss_pred CceEEEEEEEEEeCCC--CceeeEeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCcCC
Confidence 3579999999999532 35899999999 999999999999999999999999999 89999742111
Q ss_pred ------ce--Eeccc-------cCCCcchh------------------hhhccCCCc--ccccccchHHHHHHHHHHHHH
Q 005892 80 ------GI--WMARC-------AGIEPCTL------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ------gi--~~~~~-------~~~~~~~~------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
.+ ..+.. ...+++.+ .++..|+.. .......+.+|+||+++|+|+
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 73 IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred HHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 01 01110 00000100 011112211 111233467799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++||+||||++||+.. +..+.+++.++.++.|+|||++|||++++...|++++++.+ |+++..|++.++
T Consensus 153 ~~~p~llilDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~-G~i~~~g~~~~~ 225 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQG------VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDK-GRIVAYGTVEEI 225 (277)
T ss_pred HcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CeEEEECCHHHH
Confidence 9 9999999999999998 99999999999765589999999999999888999999888 999999988776
Q ss_pred cC
Q 005892 202 HM 203 (671)
Q Consensus 202 ~~ 203 (671)
+.
T Consensus 226 ~~ 227 (277)
T PRK13652 226 FL 227 (277)
T ss_pred hc
Confidence 54
No 73
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.6e-26 Score=236.09 Aligned_cols=179 Identities=13% Similarity=0.040 Sum_probs=136.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ml~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~~~ 71 (271)
T PRK13638 1 MLATSDLWFRYQD---EPVLKGLNLDF--SLSPVTGLVGANGCGKSTLFMNLSGLL----RPQKGAVLWQGKPLDYSKRG 71 (271)
T ss_pred CeEEEEEEEEcCC---cccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHcCCC----CCCccEEEECCEEcccccCC
Confidence 4899999999964 36899999999 999999999999999999999999999 89999742111
Q ss_pred ------ce-EeccccC--------CCcchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCAG--------IEPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ------gi-~~~~~~~--------~~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
.+ ++..... .++..+. ++..|+.. .......+++|+||++||+++
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 01 0111000 0000000 01111111 011123456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++|||||||++||+.. +..+.++|.++.++ |.|||+||||++.+...|++++++.+ |+++..|+++++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~ 223 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAG------RTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQ-GQILTHGAPGEV 223 (271)
T ss_pred HcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHH
Confidence 9 9999999999999999 99999999998754 89999999999998888999999988 999999987776
Q ss_pred cCC
Q 005892 202 HME 204 (671)
Q Consensus 202 ~~~ 204 (671)
+..
T Consensus 224 ~~~ 226 (271)
T PRK13638 224 FAC 226 (271)
T ss_pred hcC
Confidence 543
No 74
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.1e-26 Score=231.98 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=133.5
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+.. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSI--NPGEFVALIGPSGAGKSTLLRCLNGLV----EPTSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----CCCCceEEECCEeccccCHhH
Confidence 4789999999641 36899999999 999999999999999999999999999 78999742111
Q ss_pred ------ce-EeccccCCCcchhhhh---------------------------------ccCCCc--ccccccchHHHHHH
Q 005892 80 ------GI-WMARCAGIEPCTLIMD---------------------------------LEGTDG--RERGEDDTAFEKQS 117 (671)
Q Consensus 80 ------gi-~~~~~~~~~~~~~vld---------------------------------~~g~~~--~~r~~~~~~~qrQr 117 (671)
.+ ++.......+...+.+ ..++.. .......+.+|+||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 152 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQR 152 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHH
Confidence 00 0110000000001111 111111 01112345679999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
+++|+|++ ++|||||||++||+.. +..+.++|.++.++.|.|||++|||++.+...|++++++.+ |+++.
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~-G~i~~ 225 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPAS------SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD-GRIVF 225 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEe
Confidence 99999999 9999999999999998 99999999998765589999999999999888999999988 99999
Q ss_pred ecCcccc
Q 005892 195 SVPKPQA 201 (671)
Q Consensus 195 ~g~~~e~ 201 (671)
.|+++++
T Consensus 226 ~~~~~~~ 232 (241)
T cd03256 226 DGPPAEL 232 (241)
T ss_pred ecCHHHh
Confidence 8887664
No 75
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=8e-26 Score=230.75 Aligned_cols=181 Identities=16% Similarity=0.184 Sum_probs=135.5
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
||+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 74 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSV--PKGEIFGIIGRSGAGKSTLIRCINGLE----RPTSGSVLVDGTDLTLLSG 74 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcccCCH
Confidence 489999999996420 126899999999 999999999999999999999999999 89999742111
Q ss_pred --------ceE-eccccCC-------Ccchhhh------------------hccCCCcc--cccccchHHHHHHHHHHHH
Q 005892 80 --------GIW-MARCAGI-------EPCTLIM------------------DLEGTDGR--ERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 --------gi~-~~~~~~~-------~~~~~vl------------------d~~g~~~~--~r~~~~~~~qrQrv~iAlA 123 (671)
.+. +...... ++..+.. +..|+... ......+.+|+||++||+|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 75 KELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred HHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 111 0000000 1111111 11122110 1112345679999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++|||||||++||+.. +..+.+++.++.++.|+|||++||+++.+...|++++++.+ |+++..|++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (233)
T cd03258 155 LANNPKVLLCDEATSALDPET------TQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEK-GEVVEEGTVEE 227 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEecCHHH
Confidence 99 9999999999999999 99999999998765589999999999998888999999888 99999888665
Q ss_pred cc
Q 005892 201 AH 202 (671)
Q Consensus 201 ~~ 202 (671)
+.
T Consensus 228 ~~ 229 (233)
T cd03258 228 VF 229 (233)
T ss_pred Hh
Confidence 54
No 76
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=6.7e-26 Score=251.43 Aligned_cols=185 Identities=14% Similarity=0.133 Sum_probs=145.7
Q ss_pred cceEEEEeeeEEeccc--------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc
Q 005892 7 CCSTQLIDGDGTFNVS--------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT 78 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~--------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~ 78 (671)
.+++++.|+++.|... +...++.+|+|.+ .+||++||+|+||||||||.++|+|+. +|++|.+...
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l--~~GE~lglVGeSGsGKSTlar~i~gL~----~P~~G~i~~~ 351 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL--REGETLGLVGESGSGKSTLARILAGLL----PPSSGSIIFD 351 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEe--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEEe
Confidence 4678999999999631 1346899999999 999999999999999999999999999 8998874322
Q ss_pred Cce-----------------Eeccc-cCCCc--------------------------chhhhhccCCCcc---cccccch
Q 005892 79 KGI-----------------WMARC-AGIEP--------------------------CTLIMDLEGTDGR---ERGEDDT 111 (671)
Q Consensus 79 ~gi-----------------~~~~~-~~~~~--------------------------~~~vld~~g~~~~---~r~~~~~ 111 (671)
+.- .++.. ...++ ....++..|++.. ......+
T Consensus 352 g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elS 431 (539)
T COG1123 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELS 431 (539)
T ss_pred CcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcC
Confidence 110 01100 00011 1112344455432 1223446
Q ss_pred HHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 112 ~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
++||||++||+||+ ++|++|||++.||+.. +..|+++|++|.++.|.|+||||||+..+...||++++|.+
T Consensus 432 GGQrQRvaIARALa~~P~lli~DEp~SaLDvsv------qa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~ 505 (539)
T COG1123 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSV------QAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD 505 (539)
T ss_pred cchhHHHHHHHHHhcCCCEEEecCCccccCHHH------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEEC
Confidence 77999999999999 9999999999999988 99999999999999999999999999999999999999999
Q ss_pred CCeEEEecCcccccCC
Q 005892 189 IQKIWDSVPKPQAHME 204 (671)
Q Consensus 189 ~GkI~~~g~~~e~~~~ 204 (671)
|+|++.|+.+.++++
T Consensus 506 -G~iVE~G~~~~v~~~ 520 (539)
T COG1123 506 -GRIVEEGPTEKVFEN 520 (539)
T ss_pred -CeEEEeCCHHHHhcC
Confidence 999999987777653
No 77
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=1.1e-25 Score=231.10 Aligned_cols=177 Identities=14% Similarity=0.103 Sum_probs=134.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYV--DPGELRVIIGPNGAGKTTMMDVITGKT----RPDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEECCeecCCCCHH
Confidence 6899999999954 36899999999 999999999999999999999999998 79999742111
Q ss_pred -----ceEe-ccccC-------CCcchhh--------------------------hhccCCCc--ccccccchHHHHHHH
Q 005892 80 -----GIWM-ARCAG-------IEPCTLI--------------------------MDLEGTDG--RERGEDDTAFEKQSA 118 (671)
Q Consensus 80 -----gi~~-~~~~~-------~~~~~~v--------------------------ld~~g~~~--~~r~~~~~~~qrQrv 118 (671)
++.+ ..... .++..+. ++..|+.. .......+++|+||+
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 1110 00000 0011000 11112211 111123456699999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||+|++ ++||+||||++||+.. +..+.+++.++.+ +.|||++||+++++...|++++++.+ |+++..
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~-g~~~~~ 223 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEE------TEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQ-GSVLAE 223 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHH------HHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEEC-CeEEee
Confidence 9999999 9999999999999999 9999999999864 68999999999999888999999988 999999
Q ss_pred cCcccccC
Q 005892 196 VPKPQAHM 203 (671)
Q Consensus 196 g~~~e~~~ 203 (671)
|+++++..
T Consensus 224 ~~~~~~~~ 231 (242)
T TIGR03411 224 GSLDQVQA 231 (242)
T ss_pred CCHHHHhc
Confidence 98776654
No 78
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=8.7e-26 Score=238.00 Aligned_cols=184 Identities=13% Similarity=0.129 Sum_probs=140.5
Q ss_pred ceEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 8 CSTQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
|.|+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~L~Gl~----~p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEF--EQGKYYAIVGQTGSGKSTLIQNINALL----KPTTGTVTVDDITITHK 74 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEECccc
Confidence 3599999999995321 135999999999 999999999999999999999999999 89999742211
Q ss_pred -------------ceEecccc-C------CCcchh------------------hhhccCCC-c--ccccccchHHHHHHH
Q 005892 80 -------------GIWMARCA-G------IEPCTL------------------IMDLEGTD-G--RERGEDDTAFEKQSA 118 (671)
Q Consensus 80 -------------gi~~~~~~-~------~~~~~~------------------vld~~g~~-~--~~r~~~~~~~qrQrv 118 (671)
++.++... . .+++.+ .++..|+. . .......+++|+||+
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 75 TKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred cccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 11111100 0 001110 11122332 1 112234567799999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||+|++ ++||+||||++||+.. +..+.+++.++.++.|+|||+||||++.+...|++++++.+ |+|+..
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~-G~i~~~ 227 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQS------KRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKE-GSIVSQ 227 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEE
Confidence 9999999 9999999999999999 99999999999765689999999999998888999999888 999999
Q ss_pred cCcccccCC
Q 005892 196 VPKPQAHME 204 (671)
Q Consensus 196 g~~~e~~~~ 204 (671)
|++.+++..
T Consensus 228 g~~~~~~~~ 236 (286)
T PRK13646 228 TSPKELFKD 236 (286)
T ss_pred CCHHHHHhC
Confidence 998877654
No 79
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=1.3e-25 Score=238.44 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=136.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|+++|++++|+. ..++.++++.+ .+|+++||+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i--~~Gei~~l~G~NGaGKTTLl~~l~Gl~----~~~~G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEA--QKGRIVGFLGPNGAGKSTTMKIITGYL----PPDSGSVQVCGEDVLQNPKE 72 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEE--eCCeEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccChHH
Confidence 6999999999964 36899999999 999999999999999999999999999 89999742111
Q ss_pred ---ceE-eccccCC-------Ccchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---
Q 005892 80 ---GIW-MARCAGI-------EPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 80 ---gi~-~~~~~~~-------~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
.+. +...... ++..+. ++..|+... ......+.+|+||++||+|++
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 010 0100011 111111 111122211 112334567999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
++|||||||+|||+.+ ++.+++++.++. + ++|||++||+++++..+|++++++.+ |+++..|++.++..
T Consensus 153 ~lliLDEPt~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQ------LVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINK-GKIVADKKLDELSA 221 (301)
T ss_pred CEEEEcCCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHH
Confidence 9999999999999999 999999999985 3 79999999999999989999999988 99999999887643
No 80
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-25 Score=233.63 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=135.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~p~~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTL--RPGEVVAILGPNGAGKSTLLRALSGEL----SPDSGEVRLNGRPLADWSPA 72 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCEEcccCCHH
Confidence 5899999999964 36899999999 999999999999999999999999998 79999742211
Q ss_pred ----ce-EeccccCCCcchhhhh-------------------------ccCCCc--ccccccchHHHHHHHHHHHHHH--
Q 005892 80 ----GI-WMARCAGIEPCTLIMD-------------------------LEGTDG--RERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ----gi-~~~~~~~~~~~~~vld-------------------------~~g~~~--~~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
.+ ++...........+.+ ..|+.. .......+++|+||++||+|++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 73 ELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred HhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 01 1111000000001111 112211 0111234566999999999998
Q ss_pred -------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 126 -------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 126 -------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
++|||||||++||+.. +..+.++|.++.++.|.|||++|||++.+...|++++++.+ |+++..|++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~ 225 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAH------QHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ-GRLVADGTP 225 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEEC-CEEEeeCCH
Confidence 7999999999999999 99999999998734589999999999998888999999988 999998887
Q ss_pred ccccC
Q 005892 199 PQAHM 203 (671)
Q Consensus 199 ~e~~~ 203 (671)
.++..
T Consensus 226 ~~~~~ 230 (258)
T PRK13548 226 AEVLT 230 (258)
T ss_pred HHHhC
Confidence 66554
No 81
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=8.3e-26 Score=225.44 Aligned_cols=178 Identities=11% Similarity=0.167 Sum_probs=140.0
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI------ 81 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi------ 81 (671)
|++++.+++|+|+.. .++.+++|.+ .+|++.|++|||||||||++++|.|++ .|++|++.-.++-
T Consensus 1 ~~L~ie~vtK~Fg~k---~av~~isf~v--~~G~i~GllG~NGAGKTTtfRmILgll----e~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 1 MALEIEGVTKSFGDK---KAVDNISFEV--PPGEIFGLLGPNGAGKTTTFRMILGLL----EPTEGEITWNGGPLSQEIK 71 (300)
T ss_pred CceEEecchhccCce---eeecceeeee--cCCeEEEeecCCCCCccchHHHHhccC----CccCceEEEcCcchhhhhh
Confidence 469999999999654 8999999999 999999999999999999999999999 8999975221110
Q ss_pred ----EeccccC-------CCcchhhhhccCCCccc--------------------ccccchHHHHHHHHHHHHHH---HH
Q 005892 82 ----WMARCAG-------IEPCTLIMDLEGTDGRE--------------------RGEDDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 82 ----~~~~~~~-------~~~~~~vld~~g~~~~~--------------------r~~~~~~~qrQrv~iAlAL~---ev 127 (671)
+++...+ .+.+.++..+-|++..+ +....+.+++|++.|..|++ ++
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 0000011 11222333334444322 11233455899999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
||||||++||||.+ .+.+-+.+.+++.+ |.||||+||.|+.+..+||+++++.+ |+.+..|+...+.
T Consensus 152 lILDEPFSGLDPVN------~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~k-G~~V~~G~v~~ir 218 (300)
T COG4152 152 LILDEPFSGLDPVN------VELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKK-GQTVLYGTVEDIR 218 (300)
T ss_pred EEecCCccCCChhh------HHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheecC-CceEEeccHHHHH
Confidence 99999999999999 88899999999765 99999999999999999999999998 9999999977654
No 82
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.92 E-value=1.6e-25 Score=228.75 Aligned_cols=177 Identities=14% Similarity=0.146 Sum_probs=133.8
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSV--RPGEIHGLIGPNGAGKTTLFNLISGFL----RPTSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEe--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCCceEEECCEECCCCCHHH
Confidence 468999999954 36899999999 999999999999999999999999999 79999742110
Q ss_pred ----ceE-eccccC-------CCcchhh----------------------------hhccCCCcc--cccccchHHHHHH
Q 005892 80 ----GIW-MARCAG-------IEPCTLI----------------------------MDLEGTDGR--ERGEDDTAFEKQS 117 (671)
Q Consensus 80 ----gi~-~~~~~~-------~~~~~~v----------------------------ld~~g~~~~--~r~~~~~~~qrQr 117 (671)
++. +..... .++..+. ++..|+... ......+++|+||
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 111 111100 0011100 011122110 1112345679999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
+++|+|++ ++||+||||++||+.. +..+++++.++.+ .|.|||+||||++.+...|++++++.+ |+|..
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~-G~i~~ 223 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEE------TEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQ-GRVIA 223 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeC-CEEEe
Confidence 99999999 9999999999999999 9999999999876 489999999999998888999999988 99999
Q ss_pred ecCcccccC
Q 005892 195 SVPKPQAHM 203 (671)
Q Consensus 195 ~g~~~e~~~ 203 (671)
.|++.++..
T Consensus 224 ~~~~~~~~~ 232 (236)
T cd03219 224 EGTPDEVRN 232 (236)
T ss_pred ecCHHHhcc
Confidence 988776543
No 83
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2e-25 Score=235.40 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=138.9
Q ss_pred eEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
+|+++|+++.|++.. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~iiG~NGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 75 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFEL--EEGSFVALVGHTGSGKSTLMQHFNALL----KPSSGTITIAGYHITPET 75 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEECcccc
Confidence 699999999996321 135899999999 999999999999999999999999999 89999743211
Q ss_pred ----------ce--Eeccc-------cCCCcchh------------------hhhccCCC-c--ccccccchHHHHHHHH
Q 005892 80 ----------GI--WMARC-------AGIEPCTL------------------IMDLEGTD-G--RERGEDDTAFEKQSAL 119 (671)
Q Consensus 80 ----------gi--~~~~~-------~~~~~~~~------------------vld~~g~~-~--~~r~~~~~~~qrQrv~ 119 (671)
++ ..+.. ...+++.+ .++..|+. . .......+.+|+||++
T Consensus 76 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 76 GNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred ccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH
Confidence 11 11110 00011110 01112332 1 1222345678999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
||+|++ ++|||||||++||+.. +..+.+++.++.+. |+|||++|||++.+...|++++++.+ |+++..|
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~~-G~i~~~g 227 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEG------RKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEH-GKLIKHA 227 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999998 99999999998654 99999999999999889999999988 9999999
Q ss_pred CcccccC
Q 005892 197 PKPQAHM 203 (671)
Q Consensus 197 ~~~e~~~ 203 (671)
++.+++.
T Consensus 228 ~~~~~~~ 234 (287)
T PRK13641 228 SPKEIFS 234 (287)
T ss_pred CHHHHhc
Confidence 8777654
No 84
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=1e-25 Score=250.06 Aligned_cols=188 Identities=14% Similarity=0.152 Sum_probs=146.5
Q ss_pred ceEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc------
Q 005892 8 CSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------ 80 (671)
++|+++|+++.|...+ ...+++++||.+ .+||++||+|.|||||||+.++|.|++.......+|++...+.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v--~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEV--EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEe--cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 4899999999996542 346999999999 9999999999999999999999999992211112565311110
Q ss_pred -------------eEecccc-CCCc--------------------------chhhhhccCCCccccc----ccchHHHHH
Q 005892 81 -------------IWMARCA-GIEP--------------------------CTLIMDLEGTDGRERG----EDDTAFEKQ 116 (671)
Q Consensus 81 -------------i~~~~~~-~~~~--------------------------~~~vld~~g~~~~~r~----~~~~~~qrQ 116 (671)
+.++... ..++ ..-.++..|++...+. ...+++|||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 1111100 0111 1123344566544432 345788999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
||.+|+|++ ++||+||||++||+.. +.+|+++|+++.++.|+++||||||++.+..+||++++|.+ |+++
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~------q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~-G~iV 234 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTT------QAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK-GEIV 234 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHH------HHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEEC-CEEE
Confidence 999999999 9999999999999998 99999999999988999999999999999999999999999 9999
Q ss_pred EecCcccccCC
Q 005892 194 DSVPKPQAHME 204 (671)
Q Consensus 194 ~~g~~~e~~~~ 204 (671)
+.|++++++.+
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999998854
No 85
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.5e-25 Score=235.78 Aligned_cols=182 Identities=12% Similarity=0.141 Sum_probs=138.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------- 80 (671)
++|+++|+++.|+.. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 4 ~~l~~~~l~~~~~~~--~~~l~~vs~~i--~~Ge~~~i~G~nGaGKSTLl~~i~Gl~----~p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 4 YILKVEELNYNYSDG--THALKGININI--KKGEVTAILGGNGAGKSTLFQNLNGIL----KPSSGRILFDGKPIDYSRK 75 (283)
T ss_pred ceEEEEeEEEEeCCC--CeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCccEEEECCEECCCCcc
Confidence 379999999999532 36999999999 999999999999999999999999999 899997432110
Q ss_pred --------e-EeccccC--------CCcchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHH
Q 005892 81 --------I-WMARCAG--------IEPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 81 --------i-~~~~~~~--------~~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
+ ++..... .++..+. ++..|+.. .......+.+|+||++||+|
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1 0000000 0001000 11112211 11122345679999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++||+||||++||+.. +..+.+++.++.++.|.|||++|||++.+...|++++++.+ |+++..|++.+
T Consensus 156 L~~~p~lLilDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~-G~i~~~g~~~~ 228 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMG------VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKE-GRVILQGNPKE 228 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 99 9999999999999999 99999999999765589999999999999888999999988 99999999887
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
++..
T Consensus 229 ~~~~ 232 (283)
T PRK13636 229 VFAE 232 (283)
T ss_pred HhcC
Confidence 6653
No 86
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.92 E-value=1.4e-25 Score=231.30 Aligned_cols=179 Identities=16% Similarity=0.200 Sum_probs=136.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+||+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 2 SAIEVKNLVKKFHG---QTVLHGIDLEV--KPGEVVAIIGPSGSGKTTLLRCINLLE----QPEAGTIRVGDITIDTARS 72 (250)
T ss_pred CcEEEeceEEEECC---eeeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEcccccc
Confidence 36999999999964 36899999999 999999999999999999999999999 78999742110
Q ss_pred -------------ceE-eccccCC-------Ccchh-------------------hhhccCCCcc--cccccchHHHHHH
Q 005892 80 -------------GIW-MARCAGI-------EPCTL-------------------IMDLEGTDGR--ERGEDDTAFEKQS 117 (671)
Q Consensus 80 -------------gi~-~~~~~~~-------~~~~~-------------------vld~~g~~~~--~r~~~~~~~qrQr 117 (671)
.+. +...... ++..+ .++..|+... ......+.+|+||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 010 0000000 11100 0111122211 1112345679999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
++||+|++ ++|||||||++||+.. +..+.+++.++.++ |.|+|++|||++.+...|++++++.+ |+++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~-G~i~~ 224 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPEL------VGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQ-GRIVE 224 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 99999999998764 89999999999998888999999988 99999
Q ss_pred ecCcccccC
Q 005892 195 SVPKPQAHM 203 (671)
Q Consensus 195 ~g~~~e~~~ 203 (671)
.|++.+++.
T Consensus 225 ~~~~~~~~~ 233 (250)
T PRK11264 225 QGPAKALFA 233 (250)
T ss_pred eCCHHHHhc
Confidence 988776543
No 87
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=1.5e-25 Score=225.64 Aligned_cols=171 Identities=15% Similarity=0.162 Sum_probs=128.9
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDI--ADGEFVVLLGPSGCGKTTTLRMIAGLE----EPTSGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCCccc
Confidence 478999999965 36899999999 999999999999999999999999998 79999742110
Q ss_pred -ce-EeccccC-------CCcchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---HH
Q 005892 80 -GI-WMARCAG-------IEPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 80 -gi-~~~~~~~-------~~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---ev 127 (671)
.+ ++..... .++..+. ++..|+.. .......+.+|+||+++|++++ ++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 01 1110000 0111110 11112211 0111234566999999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+|+||||++||+.. +..+.+++.++.++.|.|+|++|||++++...|++++++.+ |+++..|
T Consensus 152 lllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKL------RVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999 99999999999765589999999999988888999988887 9998764
No 88
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.92 E-value=2.5e-25 Score=230.85 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=138.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 5 PLLSVRGLTKLYGP---RKGCRDVSFDL--YPGEVLGIVGESGSGKTTLLNALSARL----APDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred ceEEEeeeEEEcCC---ceeeeeeeEEE--eCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCcccccccc
Confidence 47999999999964 36899999999 999999999999999999999999999 79999742111
Q ss_pred --------------ceE-eccccC--C-------Ccchh-------------------hhhccCCCc---ccccccchHH
Q 005892 80 --------------GIW-MARCAG--I-------EPCTL-------------------IMDLEGTDG---RERGEDDTAF 113 (671)
Q Consensus 80 --------------gi~-~~~~~~--~-------~~~~~-------------------vld~~g~~~---~~r~~~~~~~ 113 (671)
++. +..... . ++... +++..++.. .......+++
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGG 155 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHH
Confidence 011 111100 0 00000 011123321 1122345677
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
|+||++||+|++ ++||+||||++||+.. ...+.+++.++.++.|.|||+||||++.+...|++++++.+ |
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~-g 228 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQ-G 228 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC-C
Confidence 999999999999 9999999999999998 99999999998765689999999999999888999998888 9
Q ss_pred eEEEecCcccccC
Q 005892 191 KIWDSVPKPQAHM 203 (671)
Q Consensus 191 kI~~~g~~~e~~~ 203 (671)
+++..|++++++.
T Consensus 229 ~i~~~~~~~~~~~ 241 (258)
T PRK11701 229 RVVESGLTDQVLD 241 (258)
T ss_pred EEEEeCCHHHHhc
Confidence 9999998877653
No 89
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.5e-25 Score=226.92 Aligned_cols=177 Identities=17% Similarity=0.226 Sum_probs=131.8
Q ss_pred EEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------c
Q 005892 10 TQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------G 80 (671)
Q Consensus 10 I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------g 80 (671)
|+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+ .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSV--EEGEFVALVGPSGCGKSTLLRIIAGLE----RPTSGEVLVDGEPVTGPGPD 74 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEE--eCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECccccCc
Confidence 57899999996411 136899999999 999999999999999999999999998 79999743211 1
Q ss_pred e-EeccccC-------CCcchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHh
Q 005892 81 I-WMARCAG-------IEPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVL 129 (671)
Q Consensus 81 i-~~~~~~~-------~~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLl 129 (671)
+ ++..... .++..+. ++..|+.. .......+++|+||+++|+|++ +++|
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1 1111100 1111111 11112211 1112345677999999999999 9999
Q ss_pred ccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc-CCeEEEecCc
Q 005892 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPK 198 (671)
Q Consensus 130 LDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~-~GkI~~~g~~ 198 (671)
|||||++||+.. +..+++++.++.++.|.|||+||||++++...|++++++.+ .|+|+..++.
T Consensus 155 LDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 155 LDEPFSALDALT------REQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred ECCCCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999 99999999998655589999999999988888999998883 3999887653
No 90
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-25 Score=233.85 Aligned_cols=180 Identities=16% Similarity=0.106 Sum_probs=136.8
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
.+|+++|++++|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEI--PDGHFTAIIGPNGCGKSTLLRTLSRLM----TPAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEE--CCCCEEEEECCCCCCHHHHHHHHcCCC----CCCCcEEEECCEEhhhCCH
Confidence 47999999999964 36899999999 999999999999999999999999999 79999743211
Q ss_pred -----ceEe-ccccCCCcchhhhhc-----------------------------cCCCc--ccccccchHHHHHHHHHHH
Q 005892 80 -----GIWM-ARCAGIEPCTLIMDL-----------------------------EGTDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 -----gi~~-~~~~~~~~~~~vld~-----------------------------~g~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
.+.+ ...........+.+. .|+.. .......+.+|+||++||+
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lar 156 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAM 156 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHH
Confidence 0100 000000000011111 11111 0111233566999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++||+||||++||+.. +..+.++|.++.++.|.|||++|||++.+...|++++++.+ |+++..|++.
T Consensus 157 al~~~p~llllDEPt~gLD~~~------~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~-G~i~~~g~~~ 229 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISH------QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALRE-GKIVAQGAPK 229 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999 9999999999999999 99999999999765589999999999999889999999988 9999999877
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 6554
No 91
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.3e-25 Score=234.05 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=137.0
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+.. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~l~~vsl~i--~~Ge~~~i~G~nGaGKSTLl~~i~G~~----~p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDA-ATYALKDVSFSV--YEGEWVAIVGHNGSGKSTLAKLLNGLL----LPEAGTITVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCC-CccceeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCEECCcCcH
Confidence 479999999999532 235899999999 999999999999999999999999999 89999742111
Q ss_pred -----ce--Eeccc-------cCCCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH
Q 005892 80 -----GI--WMARC-------AGIEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 -----gi--~~~~~-------~~~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+ .++.. ...+++.+ +++..|+... ......+.+|+||++||+|++
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 01 01100 00011110 1111122111 111234567999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|||||||+|||+.. +..++++|.++.++.|+|||+||||++.+. .|++++++.+ |+++..|++.++.
T Consensus 157 ~~p~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~-G~i~~~g~~~~~~ 228 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRG------RREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNK-GEILEEGTPEEIF 228 (279)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEEC-CEEEEECCHHHHh
Confidence 9999999999999999 999999999998766899999999998887 4888888888 9999999877665
Q ss_pred CC
Q 005892 203 ME 204 (671)
Q Consensus 203 ~~ 204 (671)
..
T Consensus 229 ~~ 230 (279)
T PRK13635 229 KS 230 (279)
T ss_pred cC
Confidence 43
No 92
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=1.7e-25 Score=227.83 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=133.1
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEV--PKGEVTCVLGRNGVGKTTLLKTLMGLL----PVKSGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCEECCCCCHHH
Confidence 578999999964 36899999999 999999999999999999999999999 79999742110
Q ss_pred ----ce-EeccccCCCc-------chhhhhccCC----------------Cc--ccccccchHHHHHHHHHHHHHH---H
Q 005892 80 ----GI-WMARCAGIEP-------CTLIMDLEGT----------------DG--RERGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 80 ----gi-~~~~~~~~~~-------~~~vld~~g~----------------~~--~~r~~~~~~~qrQrv~iAlAL~---e 126 (671)
.+ ++.......+ ..+.....+. .. .......+++|+||++||++++ +
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 01 1111101001 1110000000 00 1111224566999999999999 9
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
++|+||||++||+.. +..+.++|.++.++.|.|+|++||+++++...|++++++.+ |+++..|+++++
T Consensus 152 illlDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~-g~i~~~~~~~~~ 219 (230)
T TIGR03410 152 LLLLDEPTEGIQPSI------IKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMER-GRVVASGAGDEL 219 (230)
T ss_pred EEEecCCcccCCHHH------HHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHc
Confidence 999999999999999 99999999998765589999999999999888999999988 999999987665
No 93
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.92 E-value=1.5e-25 Score=226.11 Aligned_cols=169 Identities=12% Similarity=0.166 Sum_probs=126.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|++. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHI--TKGEMVFLVGHSGAGKSTFLKLILGIE----KPTRGKIRFNGQDLTRLRGR 73 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEehhhcChh
Confidence 48999999999542 235899999999 999999999999999999999999999 79999742111
Q ss_pred -------ce-EeccccC-------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHH
Q 005892 80 -------GI-WMARCAG-------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 -------gi-~~~~~~~-------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL 124 (671)
.+ ++..... .++..+. ++..|+... ......+++|+||+++|+|+
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred HHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 00 0000000 0111110 111122111 11123456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
+ ++||+||||++||+.. +..+.+++.++.++ |.|||+||||++.+...|++++++.+ |+|
T Consensus 154 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~-G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPEL------SRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSR-GRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC-CcC
Confidence 9 9999999999999999 99999999998754 89999999999988888999888877 764
No 94
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=2.1e-25 Score=228.78 Aligned_cols=178 Identities=17% Similarity=0.161 Sum_probs=134.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~l~~~~l~~~~~~---~~il~~~s~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 1 MIEFKNVSKHFGP---TQVLHNIDLNI--DQGEVVVIIGPSGSGKSTLLRCINKLE----EITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred CEEEEeEEEEECC---eEEeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCChh
Confidence 4899999999964 36899999999 999999999999999999999999998 79999742111
Q ss_pred ------ce-EeccccCC-------Ccchh-------------------hhhccCCCcc--cccccchHHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCAGI-------EPCTL-------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ------gi-~~~~~~~~-------~~~~~-------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL 124 (671)
.+ ++...... ++..+ +++..|+... ......+.+|+||++||+|+
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 01 00000000 01110 0011122110 11123456699999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ +++|+||||++||+.. +..+.+++.++.++ |.|+|++|||++++...|++++++.+ |+++..|++.++
T Consensus 152 ~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~ 223 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPEL------RHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDK-GRIAEDGDPQVL 223 (240)
T ss_pred hcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEeeCCHHHH
Confidence 9 9999999999999999 99999999998754 89999999999999888999999988 999998887765
Q ss_pred cC
Q 005892 202 HM 203 (671)
Q Consensus 202 ~~ 203 (671)
..
T Consensus 224 ~~ 225 (240)
T PRK09493 224 IK 225 (240)
T ss_pred hc
Confidence 43
No 95
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.6e-25 Score=236.82 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=141.4
Q ss_pred cceEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----
Q 005892 7 CCSTQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----- 79 (671)
.++|+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i--~~Ge~~~I~G~nGsGKSTLl~~L~Gl~----~p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTF--EKNKIYFIIGNSGSGKSTLVTHFNGLI----KSKYGTIQVGDIYIGD 92 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEECCEEccc
Confidence 35799999999996421 135999999999 999999999999999999999999999 89999753211
Q ss_pred --------------------------ceEecccc-C------CCcchh------------------hhhccCCCc---cc
Q 005892 80 --------------------------GIWMARCA-G------IEPCTL------------------IMDLEGTDG---RE 105 (671)
Q Consensus 80 --------------------------gi~~~~~~-~------~~~~~~------------------vld~~g~~~---~~ 105 (671)
++.++... . .+++.+ .++..|+.. ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 00111100 0 000110 011123321 11
Q ss_pred ccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 106 RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 106 r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
.....+++|+||++||+|++ ++|||||||++||+.. +..+++++.++..+ |.|||+||||++.+...|++
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKG------EHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCE
Confidence 22345677999999999999 9999999999999999 99999999998754 99999999999988888999
Q ss_pred hhhhhcCCeEEEecCcccccCCcc
Q 005892 183 PVLREDIQKIWDSVPKPQAHMETP 206 (671)
Q Consensus 183 ~~ll~~~GkI~~~g~~~e~~~~~~ 206 (671)
++++.+ |+|+..|++.+++....
T Consensus 246 i~vl~~-G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 246 VIVMDK-GKILKTGTPYEIFTDQH 268 (320)
T ss_pred EEEEEC-CEEEEeCCHHHHhcCHH
Confidence 999988 99999999888765543
No 96
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.92 E-value=2.1e-25 Score=225.77 Aligned_cols=175 Identities=15% Similarity=0.185 Sum_probs=131.4
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTV--PEGEIVALLGRNGAGKTTLLKTIMGLL----PPRSGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEE--cCCeEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcCCCCHHH
Confidence 578999999964 36899999999 999999999999999999999999999 79999742111
Q ss_pred ----ce-EeccccCCCcchhhhh-----------------------cc-CCCc--ccccccchHHHHHHHHHHHHHH---
Q 005892 80 ----GI-WMARCAGIEPCTLIMD-----------------------LE-GTDG--RERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 80 ----gi-~~~~~~~~~~~~~vld-----------------------~~-g~~~--~~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
.+ ++.......+...+.+ .. ++.. .......+.+|+||+++|+|++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 01 1111000000000100 00 0100 0111223566999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
++||+||||++||+.. +..+++++.++.+ .|.|||++|||++.+...|++++++.+ |++...|++.++
T Consensus 152 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 219 (222)
T cd03224 152 KLLLLDEPSEGLAPKI------VEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLER-GRVVLEGTAAEL 219 (222)
T ss_pred CEEEECCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeC-CeEEEeCCHHHH
Confidence 9999999999999999 9999999999876 489999999999998888999999888 999988876554
No 97
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5e-25 Score=230.13 Aligned_cols=183 Identities=10% Similarity=0.101 Sum_probs=137.2
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
.++|+++|+++.|++. ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 5 ~~~l~i~~l~~~~~~~-~~~~l~~isl~i--~~Ge~~~I~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~~~ 77 (269)
T PRK13648 5 NSIIVFKNVSFQYQSD-ASFTLKDVSFNI--PKGQWTSIVGHNGSGKSTIAKLMIGIE----KVKSGEIFYNNQAITDDN 77 (269)
T ss_pred CceEEEEEEEEEcCCC-CCcceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCcCC
Confidence 3579999999999642 235899999999 999999999999999999999999999 79999742211
Q ss_pred ------ce-EeccccC--C------Ccchh------------------hhhccCCCc--ccccccchHHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCAG--I------EPCTL------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ------gi-~~~~~~~--~------~~~~~------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
.+ ++..... . ++..+ +++..|+.. .......+.+|+||+++|+|+
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (269)
T PRK13648 78 FEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL 157 (269)
T ss_pred HHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence 01 1111000 0 00000 011112211 111223466799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++||+||||++||+.. +..+++++.++.++.|+|||+|||+++.+.. |++++++.+ |+|+..|+++++
T Consensus 158 ~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~-G~i~~~g~~~~~ 229 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDA------RQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNK-GTVYKEGTPTEI 229 (269)
T ss_pred HcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEEC-CEEEEecCHHHH
Confidence 9 9999999999999999 9999999999876558999999999988875 888888887 999999988776
Q ss_pred cCC
Q 005892 202 HME 204 (671)
Q Consensus 202 ~~~ 204 (671)
...
T Consensus 230 ~~~ 232 (269)
T PRK13648 230 FDH 232 (269)
T ss_pred hcC
Confidence 543
No 98
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.92 E-value=2.8e-25 Score=222.88 Aligned_cols=170 Identities=15% Similarity=0.206 Sum_probs=128.3
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc---------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--------- 80 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g--------- 80 (671)
|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHV--KKGEIYGFLGPNGAGKTTTMKIILGLI----KPDSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCCcccchHHHH
Confidence 578999999954 36999999999 999999999999999999999999999 799997432111
Q ss_pred --e-EeccccCC-------Ccchhh--------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhcc
Q 005892 81 --I-WMARCAGI-------EPCTLI--------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLIN 131 (671)
Q Consensus 81 --i-~~~~~~~~-------~~~~~v--------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLD 131 (671)
+ ++...... ++..+. ++..++.. .......+.+|+||+++|+|++ ++||+|
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 151 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 1 01100000 111111 01111211 0111234567999999999999 999999
Q ss_pred ccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 132 Ept~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
|||++||+.. +..+.+++.++.+ .|.|+|++|||++.+...|++++++.+ |+++..|
T Consensus 152 EPt~~LD~~~------~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 152 EPTNGLDPDG------IKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999 9999999999876 489999999999998888999999888 9988654
No 99
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.6e-25 Score=229.58 Aligned_cols=176 Identities=15% Similarity=0.201 Sum_probs=133.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ml~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 71 (255)
T PRK11248 1 MLQISHLYADYGG---KPALEDINLTL--ESGELLVVLGPSGCGKTTLLNLIAGFV----PYQHGSITLDGKPVEGPGAE 71 (255)
T ss_pred CEEEEEEEEEeCC---eeeEeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCCCc
Confidence 4899999999954 36899999999 999999999999999999999999999 89999753211
Q ss_pred -ceEecccc------CCCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHh
Q 005892 80 -GIWMARCA------GIEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVL 129 (671)
Q Consensus 80 -gi~~~~~~------~~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLl 129 (671)
+...+... ..++..+ +++..|+... ......+++|+||+++|++++ ++||
T Consensus 72 ~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 72 RGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred EEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11111100 0011111 1111122211 112234667999999999999 9999
Q ss_pred ccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc-CCeEEEecCcc
Q 005892 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKP 199 (671)
Q Consensus 130 LDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~-~GkI~~~g~~~ 199 (671)
|||||++||+.. +..+.++|.++.++.|.|||+||||++.+...|++++++.+ .|+|+..++.+
T Consensus 152 LDEPt~~LD~~~------~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 152 LDEPFGALDAFT------REQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EeCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999 99999999998654589999999999998888999988873 59999887653
No 100
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.7e-25 Score=231.61 Aligned_cols=189 Identities=16% Similarity=0.105 Sum_probs=140.2
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
.++|+++|+++.|++ ..++.+++|.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTF--PAGKVTGLIGHNGSGKSTLLKMLGRHQ----PPSEGEILLDAQPLESWS 79 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHcCCC----CCCCCEEEECCEehhhCC
Confidence 357999999999954 36899999999 999999999999999999999999998 79999743111
Q ss_pred ------ceEe-ccccCCCcchhhhh-----------------------------ccCCCc--ccccccchHHHHHHHHHH
Q 005892 80 ------GIWM-ARCAGIEPCTLIMD-----------------------------LEGTDG--RERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 ------gi~~-~~~~~~~~~~~vld-----------------------------~~g~~~--~~r~~~~~~~qrQrv~iA 121 (671)
.+.+ .......+...+.+ ..++.. .......+++|+||++||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 80 SKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 1111 11100000001111 011110 001123456699999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+|++ ++|||||||++||+.. +..+.++|.++.+..|.|||++||+++++...|++++++.+ |+|+..|++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~-G~i~~~~~~ 232 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAH------QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG-GEMIAQGTP 232 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEecCH
Confidence 9999 9999999999999999 99999999998765589999999999998888999998888 999999987
Q ss_pred ccccCCccccchh
Q 005892 199 PQAHMETPLSEFF 211 (671)
Q Consensus 199 ~e~~~~~~l~~~f 211 (671)
.++.....+..+|
T Consensus 233 ~~~~~~~~~~~~~ 245 (265)
T PRK10575 233 AELMRGETLEQIY 245 (265)
T ss_pred HHhcCHHHHHHHh
Confidence 7665433333443
No 101
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.7e-25 Score=232.50 Aligned_cols=184 Identities=11% Similarity=0.033 Sum_probs=137.2
Q ss_pred cceEEEEeeeEEecccc---ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----
Q 005892 7 CCSTQLIDGDGTFNVSG---IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~---l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---- 79 (671)
.+||+++|++++|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~i~g~~i~ 75 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEV--KKGEFLVILGRNGSGKSTIAKHMNALL----IPSEGKVYVDGLDTS 75 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEecc
Confidence 35799999999996321 235999999999 999999999999999999999999999 79999742111
Q ss_pred ----------ce--Eecccc--C-----CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHH
Q 005892 80 ----------GI--WMARCA--G-----IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALF 120 (671)
Q Consensus 80 ----------gi--~~~~~~--~-----~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~i 120 (671)
.+ .++... . .++..+. ++..|+... ......+.+|+||++|
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~l 155 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAI 155 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 00 011000 0 0000000 001111110 1112345669999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
|++++ ++||+||||++||+.. +..+.+++.++.++.|.|||+||||++.+.. |++++++.+ |+|+..|+
T Consensus 156 aral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~-G~i~~~g~ 227 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSG------RREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDS-GKVVMEGT 227 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEEC-CEEEEecC
Confidence 99999 9999999999999999 9999999999976569999999999998875 898888888 99999999
Q ss_pred cccccCC
Q 005892 198 KPQAHME 204 (671)
Q Consensus 198 ~~e~~~~ 204 (671)
+.+++.+
T Consensus 228 ~~~~~~~ 234 (280)
T PRK13633 228 PKEIFKE 234 (280)
T ss_pred HHHHhcC
Confidence 8877644
No 102
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.1e-25 Score=228.39 Aligned_cols=183 Identities=13% Similarity=0.083 Sum_probs=135.0
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCC-CCCCCCCeeeccC-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~-~m~p~sG~~q~~~------- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+... ...|++|++...+
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEF--EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEE--eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 57999999999964 36899999999 99999999999999999999999998610 0015788742111
Q ss_pred --------ceE-eccccC------CCcchhhh-------------------hccCCCc------ccccccchHHHHHHHH
Q 005892 80 --------GIW-MARCAG------IEPCTLIM-------------------DLEGTDG------RERGEDDTAFEKQSAL 119 (671)
Q Consensus 80 --------gi~-~~~~~~------~~~~~~vl-------------------d~~g~~~------~~r~~~~~~~qrQrv~ 119 (671)
.+. +..... .++..+.. +..|+.. .......+++|+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 111 000000 01111111 1112211 1112335678999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+|+|++ ++||+||||++||+.. +..+.++|.++. + +.|||+||||++.+...|++++++.+ |+|+..|
T Consensus 160 laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~-G~i~~~g 230 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIA------TQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYM-GKLIEVG 230 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999999 999999999984 3 78999999999998888999999988 9999999
Q ss_pred CcccccCC
Q 005892 197 PKPQAHME 204 (671)
Q Consensus 197 ~~~e~~~~ 204 (671)
++++++..
T Consensus 231 ~~~~~~~~ 238 (253)
T PRK14242 231 PTEQIFTR 238 (253)
T ss_pred CHHHHHcC
Confidence 87766543
No 103
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.2e-25 Score=244.36 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=139.4
Q ss_pred ceEEEEeeeEEecccc---------------------ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCC
Q 005892 8 CSTQLIDGDGTFNVSG---------------------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR 66 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~---------------------l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~ 66 (671)
.+|+++|++|.|+... ...++.+++|.+ .+|++++|+|||||||||||++|+|+.
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i--~~Gei~~LvG~NGsGKSTLLr~I~Gl~-- 78 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAI--EEGEIFVIMGLSGSGKSTMVRLLNRLI-- 78 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEE--cCCCEEEEECCCCchHHHHHHHHHcCC--
Confidence 4699999999997631 112689999999 999999999999999999999999999
Q ss_pred CCCCCCCeeeccC-----------------ceE-eccccC-------CCcchhh------------------hhccCCCc
Q 005892 67 EMDAFKGRSQTTK-----------------GIW-MARCAG-------IEPCTLI------------------MDLEGTDG 103 (671)
Q Consensus 67 ~m~p~sG~~q~~~-----------------gi~-~~~~~~-------~~~~~~v------------------ld~~g~~~ 103 (671)
+|++|++...+ .+- +..... .++..+. ++..|+..
T Consensus 79 --~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~ 156 (400)
T PRK10070 79 --EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN 156 (400)
T ss_pred --CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 89999742110 111 111101 1111111 11123321
Q ss_pred c--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccc
Q 005892 104 R--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (671)
Q Consensus 104 ~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~ 178 (671)
. ......+++|+||++||+|++ ++|||||||++||+.. +..+.+.|.++.++.|+||||||||++++..
T Consensus 157 ~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~------r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~ 230 (400)
T PRK10070 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI------RTEMQDELVKLQAKHQRTIVFISHDLDEAMR 230 (400)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 1 112345677999999999999 9999999999999999 9999999999976568999999999999988
Q ss_pred cccchhhhhcCCeEEEecCcccccC
Q 005892 179 ENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 179 ~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
+|++++++.+ |+|+..|++.+++.
T Consensus 231 ~~Dri~vL~~-G~i~~~g~~~~l~~ 254 (400)
T PRK10070 231 IGDRIAIMQN-GEVVQVGTPDEILN 254 (400)
T ss_pred hCCEEEEEEC-CEEEecCCHHHHHh
Confidence 8999999988 99999998877654
No 104
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.4e-25 Score=232.08 Aligned_cols=180 Identities=13% Similarity=0.111 Sum_probs=134.6
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|++. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ml~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 1 MIRLENVSYSYPDG--TPALENINLVI--KKGEYIGIIGKNGSGKSTLALHLNGLL----RPQKGKVLVSGIDTGDFSKL 72 (274)
T ss_pred CEEEEEEEEEcCCC--CceeeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEECCccccH
Confidence 48899999999532 35899999999 999999999999999999999999998 79999742111
Q ss_pred -----ce--Eecccc-------CCCcchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH
Q 005892 80 -----GI--WMARCA-------GIEPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 -----gi--~~~~~~-------~~~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+ ..+... ..+++.+. ++..|+.. .......+.+|+||++||+|++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 01 001000 00000000 01112211 0111234567999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|||||||++||+.. +..+++++.++.++ |.|||++|||++.+. .|++++++.+ |+++..|++.+++
T Consensus 153 ~~p~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~til~~tH~~~~~~-~~d~v~~l~~-G~i~~~g~~~~~~ 223 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDS------GIAVLERIKKLHEK-GKTIVYITHNLEELH-DADRIIVMDR-GKIVLEGEPENVL 223 (274)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHh-hCCEEEEEEC-CEEEEECCHHHHh
Confidence 9999999999999998 99999999998754 999999999998885 5888888887 9999999987765
Q ss_pred CCc
Q 005892 203 MET 205 (671)
Q Consensus 203 ~~~ 205 (671)
...
T Consensus 224 ~~~ 226 (274)
T PRK13644 224 SDV 226 (274)
T ss_pred cCh
Confidence 443
No 105
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3e-25 Score=228.04 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=135.1
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|++. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEI--AKGEFLVLIGPSGSGKTTTMKMINRLI----EPTSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCeEcCcCChHH
Confidence 4789999999651 36899999999 999999999999999999999999999 79999742111
Q ss_pred ---ceE-eccccC-------CCcchh------------------hhhccCCCc----ccccccchHHHHHHHHHHHHHH-
Q 005892 80 ---GIW-MARCAG-------IEPCTL------------------IMDLEGTDG----RERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 80 ---gi~-~~~~~~-------~~~~~~------------------vld~~g~~~----~~r~~~~~~~qrQrv~iAlAL~- 125 (671)
.+. +..... .++..+ .++..|+.. .......+.+|+||++||+|++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 010 111000 011111 111223331 1122345677999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++||+||||++||+.. +..+.+.+.++.++.|+|||++||+++.+...|++++++.+ |+++..|+++++.
T Consensus 153 ~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 224 (242)
T cd03295 153 DPPLLLMDEPFGALDPIT------RDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKN-GEIVQVGTPDEIL 224 (242)
T ss_pred CCCEEEecCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEecCHHHHH
Confidence 9999999999999998 99999999998765589999999999988888999998888 9999888766553
No 106
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=3.5e-25 Score=231.10 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=137.9
Q ss_pred ceEEEEeeeEEeccc------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--
Q 005892 8 CSTQLIDGDGTFNVS------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-- 79 (671)
+||+++|++++|+.. +...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~i~G~NGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~ 76 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTL--REGQTLAIIGENGSGKSTLAKMLAGMI----EPTSGELLIDDHP 76 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEe--cCCCEEEEEcCCCCCHHHHHHHHhCCC----CCCCCEEEECCEE
Confidence 469999999999521 1135899999999 999999999999999999999999999 89999742111
Q ss_pred -----------ceEe-ccccC--CCc-------c-------------------hhhhhccCCCc---ccccccchHHHHH
Q 005892 80 -----------GIWM-ARCAG--IEP-------C-------------------TLIMDLEGTDG---RERGEDDTAFEKQ 116 (671)
Q Consensus 80 -----------gi~~-~~~~~--~~~-------~-------------------~~vld~~g~~~---~~r~~~~~~~qrQ 116 (671)
.+.+ ..... ..+ . ..+++..|+.. .......+.+|+|
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 77 LHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred CCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHH
Confidence 1110 10000 000 0 00111223311 1112335677999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|++||++++ ++|||||||++||+.. +..+.++|.++.++.|.|||+|||+++.+...|++++++.+ |+++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSM------RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEEC-CEEE
Confidence 999999999 9999999999999998 99999999999765589999999999999888999999887 9999
Q ss_pred EecCcccccC
Q 005892 194 DSVPKPQAHM 203 (671)
Q Consensus 194 ~~g~~~e~~~ 203 (671)
..|+++++..
T Consensus 230 ~~~~~~~~~~ 239 (267)
T PRK15112 230 ERGSTADVLA 239 (267)
T ss_pred ecCCHHHHhc
Confidence 9888766543
No 107
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=3.9e-25 Score=249.57 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=138.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-e------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I------ 81 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-i------ 81 (671)
||+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+. +
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~liG~nGsGKSTLl~~l~G~~----~p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTL--NAGDSWAFVGANGSGKSALARALAGEL----PLLSGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CCCCceEEECCcccccCCHH
Confidence 6999999999964 35899999999 999999999999999999999999999 799997532110 0
Q ss_pred --------Eecccc--------------CCCcc----------hhhhhccCCCc--ccccccchHHHHHHHHHHHHHH--
Q 005892 82 --------WMARCA--------------GIEPC----------TLIMDLEGTDG--RERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 82 --------~~~~~~--------------~~~~~----------~~vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
.++... ..++. ..+++..|+.. .......+++|+||++||+|++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSE 153 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 000000 00000 00111222221 1122345677999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++|||||||++||+.. +..+.++|.++.++ |.|||+||||++.+...|++++++.+ |+|+..|+++++...
T Consensus 154 p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~-G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 154 PDLLILDEPFDGLDVAS------RQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLAD-CTLAETGEREEILQQ 225 (490)
T ss_pred CCEEEEcCCcccCCHHH------HHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEEC-CEEEEeCCHHHHhcc
Confidence 9999999999999999 99999999999765 89999999999999889999999988 999999987766543
No 108
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=4.7e-25 Score=250.13 Aligned_cols=181 Identities=12% Similarity=0.089 Sum_probs=140.0
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
++++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 8 ~~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~liG~NGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~ 78 (510)
T PRK15439 8 APPLLCARSISKQYSG---VEVLKGIDFTL--HAGEVHALLGGNGAGKSTLMKIIAGIV----PPDSGTLEIGGNPCARL 78 (510)
T ss_pred CCceEEEEeEEEEeCC---ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCCC
Confidence 3457999999999964 36899999999 999999999999999999999999999 79999853211
Q ss_pred --------ce-EeccccCCCcchh---------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH--
Q 005892 80 --------GI-WMARCAGIEPCTL---------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 --------gi-~~~~~~~~~~~~~---------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
++ ++.......+... .++..|+... ......+++|+||++||+|++
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 79 TPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred CHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 11 1111100000001 1122233211 122345678999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
++|||||||++||+.. +..+.++|.++.++ |+|||+||||++.+...|++++++.+ |+|+..|+++++..
T Consensus 159 p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAE------TERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRD-GTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEecChHHcCH
Confidence 9999999999999999 99999999999765 99999999999999888999999988 99999998877653
No 109
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.5e-25 Score=226.59 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=134.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
+|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDC--PQGETLVLLGPSGAGKSSLLRVLNLLE----MPRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEeccccccc
Confidence 6999999999964 36899999999 999999999999999999999999999 799997432110
Q ss_pred -----------eE-eccccC-------CCcchh-------------------hhhccCCCc--ccccccchHHHHHHHHH
Q 005892 81 -----------IW-MARCAG-------IEPCTL-------------------IMDLEGTDG--RERGEDDTAFEKQSALF 120 (671)
Q Consensus 81 -----------i~-~~~~~~-------~~~~~~-------------------vld~~g~~~--~~r~~~~~~~qrQrv~i 120 (671)
+. +..... .++... .++..|+.. .......+.+|+||+++
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 10 110000 001100 001112211 11112345679999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
|+|++ +++|+||||++||+.. +..+.+++.++.++ |+|+|++|||++.+...|++++++.+ |+++..|+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~-g~i~~~~~ 224 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEI------TAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMEN-GHIVEQGD 224 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEEeCC
Confidence 99999 9999999999999999 99999999998654 89999999999998888999988888 99999887
Q ss_pred cccc
Q 005892 198 KPQA 201 (671)
Q Consensus 198 ~~e~ 201 (671)
+.+.
T Consensus 225 ~~~~ 228 (242)
T PRK11124 225 ASCF 228 (242)
T ss_pred HHHh
Confidence 6654
No 110
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.6e-25 Score=226.05 Aligned_cols=181 Identities=16% Similarity=0.132 Sum_probs=133.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|+.. . .++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~l~~~~l~~~~~~~---~--~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 1 MLKLTDITWLYHHL---P--MRFDLTV--ERGERVAILGPSGAGKSTLLNLIAGFL----TPASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred CeEEEEEEEEECCc---c--ceeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCeecCcCChh
Confidence 48999999999542 1 2789999 899999999999999999999999999 79999742111
Q ss_pred --ceEe-ccccCCCcchhhhhc-------------------------cCCCc--ccccccchHHHHHHHHHHHHHH---H
Q 005892 80 --GIWM-ARCAGIEPCTLIMDL-------------------------EGTDG--RERGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 80 --gi~~-~~~~~~~~~~~vld~-------------------------~g~~~--~~r~~~~~~~qrQrv~iAlAL~---e 126 (671)
++.+ .......+...+.+. .|+.. .......+.+|+||+++|++++ +
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1111 111010000011111 11111 0011123556999999999999 9
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCCcc
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETP 206 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~~ 206 (671)
++|+|||+++||+.. +..+.+++.++.++.|+|+|++|||++++...|++++++.+ |+++..|++.++.....
T Consensus 150 lllLDEP~~gLD~~~------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-g~i~~~g~~~~~~~~~~ 222 (232)
T PRK10771 150 ILLLDEPFSALDPAL------RQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVAD-GRIAWDGPTDELLSGKA 222 (232)
T ss_pred EEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHhChh
Confidence 999999999999999 99999999998765589999999999998888999988888 99999998777665443
Q ss_pred c
Q 005892 207 L 207 (671)
Q Consensus 207 l 207 (671)
+
T Consensus 223 ~ 223 (232)
T PRK10771 223 S 223 (232)
T ss_pred H
Confidence 3
No 111
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.8e-25 Score=214.15 Aligned_cols=180 Identities=17% Similarity=0.251 Sum_probs=145.4
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc--------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-------- 78 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~-------- 78 (671)
|+++.+.+++.+|.+. -..++.++++++ .+|+.|.++||||||||||||+++|+. +|+.|+++..
T Consensus 1 M~~l~~~~~sl~y~g~-~~~~le~vsL~i--a~ge~vv~lGpSGcGKTTLLnl~AGf~----~P~~G~i~l~~r~i~gPg 73 (259)
T COG4525 1 MCMLNVSHLSLSYEGK-PRSALEDVSLTI--ASGELVVVLGPSGCGKTTLLNLIAGFV----TPSRGSIQLNGRRIEGPG 73 (259)
T ss_pred CceeehhheEEecCCc-chhhhhccceee--cCCCEEEEEcCCCccHHHHHHHHhcCc----CcccceEEECCEeccCCC
Confidence 4679999999999765 356999999999 999999999999999999999999999 8999986532
Q ss_pred --CceEeccc------cCCCcchhhhhccCCCcccccc--------------------cchHHHHHHHHHHHHHH---HH
Q 005892 79 --KGIWMARC------AGIEPCTLIMDLEGTDGRERGE--------------------DDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 79 --~gi~~~~~------~~~~~~~~vld~~g~~~~~r~~--------------------~~~~~qrQrv~iAlAL~---ev 127 (671)
+|+.++.. ...+|..+.+...|+++.+|.+ ..+++||||+.+|+||+ +.
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 23333322 1134555666666666554432 23455999999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc-CCeEEEecCcc
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKP 199 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~-~GkI~~~g~~~ 199 (671)
|+||||+.+||... ++.+.+++.++.+..|+.+++||||++++..++++.+++.- -|+|+..-++.
T Consensus 154 LlLDEPfgAlDa~t------Re~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 154 LLLDEPFGALDALT------REQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred EeecCchhhHHHHH------HHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999998 99999999999988999999999999999988888887753 26888766543
No 112
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.92 E-value=4.4e-25 Score=223.24 Aligned_cols=175 Identities=11% Similarity=0.186 Sum_probs=130.8
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+.. ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNV--YKGEIFGLLGHNGAGKTTTLKMLTGEL----RPTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEecccchHHH
Confidence 5789999999541 146899999999 999999999999999999999999999 79999742111
Q ss_pred --ce-EeccccC-------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---H
Q 005892 80 --GI-WMARCAG-------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 80 --gi-~~~~~~~-------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---e 126 (671)
.+ ++..... .++..+. ++..++... ......+.+|+||++||+|++ +
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 01 0110000 0111110 111122111 111234566999999999999 9
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+||+||||++||+.. +..+.+++.++.+ +.|+|++||+++.+...|++++++.+ |+++..|++++
T Consensus 154 llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~-g~i~~~~~~~~ 218 (220)
T cd03263 154 VLLLDEPTSGLDPAS------RRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSD-GKLRCIGSPQE 218 (220)
T ss_pred EEEECCCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEEC-CEEEecCCHHH
Confidence 999999999999998 9999999999864 58999999999998888999988888 99998887654
No 113
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=4.6e-25 Score=243.34 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=138.6
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
+++.+++.|++|+|++ ..++.+++|.+ .+|||+||+|.||||||||+|+|+|.. +|++|++...+
T Consensus 5 ~~~ll~~~~i~K~Fgg---V~AL~~v~l~v--~~GEV~aL~GeNGAGKSTLmKiLsGv~----~p~~G~I~~~G~~~~~~ 75 (500)
T COG1129 5 TPPLLELRGISKSFGG---VKALDGVSLTV--RPGEVHALLGENGAGKSTLMKILSGVY----PPDSGEILIDGKPVAFS 75 (500)
T ss_pred ccceeeeecceEEcCC---ceeeccceeEE--eCceEEEEecCCCCCHHHHHHHHhCcc----cCCCceEEECCEEccCC
Confidence 3458999999999965 38999999999 999999999999999999999999999 89999742211
Q ss_pred --------ceEe--ccc------cCCCcchh----------------------hhhccCC--CcccccccchHHHHHHHH
Q 005892 80 --------GIWM--ARC------AGIEPCTL----------------------IMDLEGT--DGRERGEDDTAFEKQSAL 119 (671)
Q Consensus 80 --------gi~~--~~~------~~~~~~~~----------------------vld~~g~--~~~~r~~~~~~~qrQrv~ 119 (671)
||.+ +.. +..+|+.+ +++..|. ++..........|||.|.
T Consensus 76 sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~Ve 155 (500)
T COG1129 76 SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVE 155 (500)
T ss_pred CHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHH
Confidence 1110 000 00001100 1111122 122222344556999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
||+|++ ++|||||||+.|+... ...+++++++|.++ |.++|||||.++++..+||+++|+.| |+++...
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E------~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVlRD-G~~v~~~ 227 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKE------TERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRD-GRVVGTR 227 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEEeC-CEEeeec
Confidence 999999 8999999999999988 99999999999865 99999999999999999999999999 9999988
Q ss_pred Cc-ccc
Q 005892 197 PK-PQA 201 (671)
Q Consensus 197 ~~-~e~ 201 (671)
+. .+.
T Consensus 228 ~~~~~~ 233 (500)
T COG1129 228 PTAAET 233 (500)
T ss_pred ccccCC
Confidence 84 443
No 114
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.91 E-value=5.8e-25 Score=222.04 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=129.2
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
||+++|+++.|+... ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 74 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTV--KPGEVTGLLGPNGAGKTTTLRMLAGLL----EPDAGFATVDGFDVVKEPA 74 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCc----CCCCceEEECCEEcccCHH
Confidence 488999999996421 116899999999 999999999999999999999999999 79999742111
Q ss_pred ----ce-EeccccCC-------Ccchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH--
Q 005892 80 ----GI-WMARCAGI-------EPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ----gi-~~~~~~~~-------~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
.+ ++...... ++..+. ++..|+.. .......+.+|+||+++|+|++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (218)
T cd03266 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD 154 (218)
T ss_pred HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence 01 01110000 111111 11112211 0111224566999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
++||+||||++||+.. +..+.+++.++.++ |.|+|+||||++.+...+++++++.+ |+++..|
T Consensus 155 p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 155 PPVLLLDEPTTGLDVMA------TRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred CCEEEEcCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999998 99999999998654 89999999999988888999988887 9987643
No 115
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.9e-25 Score=221.43 Aligned_cols=170 Identities=13% Similarity=0.141 Sum_probs=127.8
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------c
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------G 80 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------g 80 (671)
|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+ .
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSV--EKGEIFGLLGPNGAGKTTTIRMILGII----LPDSGEVLFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCCchhHHHHcc
Confidence 578999999954 36899999999 999999999999999999999999998 79999743211 1
Q ss_pred e-EeccccC-------CCcchhhh------------------hccCCCcc--cccccchHHHHHHHHHHHHHH---HHHh
Q 005892 81 I-WMARCAG-------IEPCTLIM------------------DLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVL 129 (671)
Q Consensus 81 i-~~~~~~~-------~~~~~~vl------------------d~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLl 129 (671)
+ ++..... .++..+.. +..|+... ......+.+|+||++||++++ +++|
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 1111100 11111111 11122110 111234567999999999999 9999
Q ss_pred ccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 130 LDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+||||++||+.. +..+.+++.++.++ |.|+|++|||++.+...|++++++.+ |+++..|
T Consensus 152 lDEP~~~LD~~~------~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 152 LDEPFSGLDPVN------VELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred EeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeC-CEEEecC
Confidence 999999999999 99999999998764 89999999999988888999988887 9987643
No 116
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.8e-25 Score=230.34 Aligned_cols=182 Identities=13% Similarity=0.112 Sum_probs=138.2
Q ss_pred ceEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 8 CSTQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
|+|+++|+++.|+... ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTI--EDGSYTAFIGHTGSGKSTIMQLLNGLH----VPTQGSVRVDDTLITST 74 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccc
Confidence 3599999999996421 135899999999 999999999999999999999999999 79999743111
Q ss_pred -----------ce-Eecccc--C------CCcchh------------------hhhccCCCc---ccccccchHHHHHHH
Q 005892 80 -----------GI-WMARCA--G------IEPCTL------------------IMDLEGTDG---RERGEDDTAFEKQSA 118 (671)
Q Consensus 80 -----------gi-~~~~~~--~------~~~~~~------------------vld~~g~~~---~~r~~~~~~~qrQrv 118 (671)
.+ ++.... . .+++.+ +++..|+.. .......+.+|+||+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 154 (280)
T PRK13649 75 SKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRV 154 (280)
T ss_pred ccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 01 111110 0 011111 011223321 112234567899999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||+|++ ++|||||||++||+.. +..+.++|.++.++ |.|||+||||++.+...|++++++.+ |+++..
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~-G~i~~~ 226 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKG------RKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEK-GKLVLS 226 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999999 99999999999764 89999999999988888999999988 999999
Q ss_pred cCcccccC
Q 005892 196 VPKPQAHM 203 (671)
Q Consensus 196 g~~~e~~~ 203 (671)
|++.+++.
T Consensus 227 g~~~~~~~ 234 (280)
T PRK13649 227 GKPKDIFQ 234 (280)
T ss_pred CCHHHHhc
Confidence 88776654
No 117
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.9e-25 Score=239.57 Aligned_cols=179 Identities=17% Similarity=0.157 Sum_probs=136.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
||++ |++++|+.. . .++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 ~l~~-~l~k~~~~~---~--~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~iaGl~----~p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 1 MLEL-NFKQQLGDL---C--LTVNLTL--PAQGITAIFGRSGAGKTSLINAISGLT----RPQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred CeEE-EEEEEeCCE---E--EEEEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEccccccc
Confidence 4788 999999642 2 2789999 899999999999999999999999999 899997432110
Q ss_pred ---------eE-eccccCC-------Ccchh------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH---H
Q 005892 81 ---------IW-MARCAGI-------EPCTL------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 81 ---------i~-~~~~~~~-------~~~~~------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---e 126 (671)
+. +...... ++..+ +++..|+.. .......+++|+||++||+|++ +
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 10 0000000 11110 112223322 1122345678999999999999 9
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCCcc
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETP 206 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~~ 206 (671)
+|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++++..+|++++++.+ |+++..|++.+++.++.
T Consensus 149 llLLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~-G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 149 LLLMDEPLASLDLPR------KRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQ-GKVKAFGPLEEVWASSA 221 (352)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeC-CEEEEecCHHHHHhCcc
Confidence 999999999999998 99999999999876689999999999999888999999988 99999999988876543
No 118
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.4e-25 Score=223.44 Aligned_cols=176 Identities=18% Similarity=0.189 Sum_probs=129.8
Q ss_pred ceEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 8 CSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
++|+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~i~~~~ 77 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSI--GEGEMMAIVGSSGSGKSTLLHLLGGLD----TPTSGDVIFNGQPMSKLS 77 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcCcCC
Confidence 4699999999996421 136899999999 999999999999999999999999999 79999742111
Q ss_pred ----------ceE-eccccC-------CCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHH
Q 005892 80 ----------GIW-MARCAG-------IEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 ----------gi~-~~~~~~-------~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iA 121 (671)
.+. +..... .++..+ +++..|+... ......+++|+||++||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 78 SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 111 010000 011111 0111122111 11123456799999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
+|++ ++|||||||++||+.. +..+.+++.++.++.|+|||+||||++.+.. +++++++.+ |+|+..++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~-G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARN------ADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRD-GRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEEC-CEEEEEec
Confidence 9999 9999999999999999 9999999999875458999999999988775 467777776 99988765
No 119
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.91 E-value=8.8e-25 Score=214.88 Aligned_cols=168 Identities=21% Similarity=0.240 Sum_probs=130.1
Q ss_pred EEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccC--
Q 005892 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-- 88 (671)
Q Consensus 11 ~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~-- 88 (671)
+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++... +..+.....
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i--~~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~-g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSI--EAGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLD-GKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEEC-CEECCcCCHHH
Confidence 46899999954 36899999999 999999999999999999999999999 8999964221 111110000
Q ss_pred -CCcchh---hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhh
Q 005892 89 -IEPCTL---IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF 159 (671)
Q Consensus 89 -~~~~~~---vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~ 159 (671)
.....+ .++..|+... ......+.+|+||+++|++++ +++|+||||++||+.. +..+.+++.++.
T Consensus 71 ~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~------~~~~~~~l~~~~ 144 (180)
T cd03214 71 LARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH------QIELLELLRRLA 144 (180)
T ss_pred HHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHH
Confidence 001111 2333444332 223456788999999999999 9999999999999998 999999999987
Q ss_pred CCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 160 SPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 160 ~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
++.+.|+|++||+++.+...|++++++.+ |++...
T Consensus 145 ~~~~~tiii~sh~~~~~~~~~d~~~~l~~-g~i~~~ 179 (180)
T cd03214 145 RERGKTVVMVLHDLNLAARYADRVILLKD-GRIVAQ 179 (180)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEec
Confidence 64478999999999998888999998887 998754
No 120
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.91 E-value=5.2e-25 Score=227.55 Aligned_cols=178 Identities=18% Similarity=0.219 Sum_probs=134.6
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc---------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--------- 80 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g--------- 80 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSV--AAGEKVALIGPSGSGKSTILRILMTLE----PIDEGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccccccc
Confidence 578999999964 36899999999 999999999999999999999999999 799997432110
Q ss_pred -----------------eE-eccccCC-------Ccchh-------------------hhhccCCCcc--cccccchHHH
Q 005892 81 -----------------IW-MARCAGI-------EPCTL-------------------IMDLEGTDGR--ERGEDDTAFE 114 (671)
Q Consensus 81 -----------------i~-~~~~~~~-------~~~~~-------------------vld~~g~~~~--~r~~~~~~~q 114 (671)
+. +...... ++..+ .++..|+... ......+.+|
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQ 151 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHH
Confidence 10 0000000 01110 0001122110 1112345679
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|+|++ ++||+||||++||+.. +..+.+++.++.++.|+|+|+||||++.+...|++++++.+ |+
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~-G~ 224 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPEL------VGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDK-GR 224 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC-CE
Confidence 99999999999 9999999999999998 99999999998765589999999999998888999999888 99
Q ss_pred EEEecCcccccC
Q 005892 192 IWDSVPKPQAHM 203 (671)
Q Consensus 192 I~~~g~~~e~~~ 203 (671)
++..|++.++..
T Consensus 225 i~~~g~~~~~~~ 236 (252)
T TIGR03005 225 IVEQGKPDEIFR 236 (252)
T ss_pred EEEeCCHHHHhc
Confidence 999988776643
No 121
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.91 E-value=3.9e-25 Score=223.26 Aligned_cols=169 Identities=25% Similarity=0.265 Sum_probs=124.5
Q ss_pred EEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 10 TQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
|+++|+++.|++.. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i--~~G~~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSI--EKGEFVAIVGPSGSGKSTLLNILGGLD----RPTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEE--cCCCEEEEEcCCCCCHHHHHHHHhCCc----CCCceeEEECCEehhhcchh
Confidence 57899999996411 146899999999 999999999999999999999999999 79999742110
Q ss_pred --------ceE-eccccC-------CCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHH
Q 005892 80 --------GIW-MARCAG-------IEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 --------gi~-~~~~~~-------~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlA 123 (671)
.+. +..... .++..+ .++..|+... ......+++|+||+++|+|
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA 154 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHH
Confidence 111 000000 011111 1111122211 1112345679999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
++ ++|||||||++||+.. +..+.+++.++.++.|+|||+||||++.+. .|++++++.+ |++
T Consensus 155 l~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~-G~i 218 (218)
T cd03255 155 LANDPKIILADEPTGNLDSET------GKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRD-GKI 218 (218)
T ss_pred HccCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeC-CcC
Confidence 99 9999999999999999 999999999997645899999999998876 7888888877 764
No 122
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.91 E-value=7.4e-25 Score=228.35 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=137.0
Q ss_pred eEEEEeeeEEeccc------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---
Q 005892 9 STQLIDGDGTFNVS------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--- 79 (671)
||+++|+++.|+.. +...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i 75 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSI--EEGETVGLLGRSGCGKSTLARLLLGLE----KPAQGTVSFRGQDL 75 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEc
Confidence 58999999999531 0246899999999 999999999999999999999999999 79999742111
Q ss_pred -------------ceE-ecccc--CCCc-------chh-------------------hhhccCCCc---ccccccchHHH
Q 005892 80 -------------GIW-MARCA--GIEP-------CTL-------------------IMDLEGTDG---RERGEDDTAFE 114 (671)
Q Consensus 80 -------------gi~-~~~~~--~~~~-------~~~-------------------vld~~g~~~---~~r~~~~~~~q 114 (671)
.+. +.... ...+ ..+ +++..|+.. .......+.+|
T Consensus 76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence 011 11100 0000 000 011112211 11222345679
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|+|++ ++|||||||++||+.. +..+.++|.++.+..|+|||+||||++.+...|++++++.+ |+
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~-G~ 228 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVL------QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDK-GQ 228 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeC-CE
Confidence 99999999999 9999999999999998 99999999998765589999999999998888999999887 99
Q ss_pred EEEecCcccccC
Q 005892 192 IWDSVPKPQAHM 203 (671)
Q Consensus 192 I~~~g~~~e~~~ 203 (671)
++..|++.++..
T Consensus 229 i~~~g~~~~~~~ 240 (265)
T TIGR02769 229 IVEECDVAQLLS 240 (265)
T ss_pred EEEECCHHHHcC
Confidence 999998877653
No 123
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.3e-25 Score=229.51 Aligned_cols=183 Identities=13% Similarity=0.099 Sum_probs=136.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+...-..++.++++.+ .+|++++|+|+||||||||+++|+|+. +|++|++...+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSI--TKGEWVSIIGQNGSGKSTTARLIDGLF----EEFEGKVKIDGELLTAENV 76 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCCEEEECCEECCcCCH
Confidence 4799999999996421235899999999 999999999999999999999999999 89999742110
Q ss_pred -------ceEecccc-C------CCcchhhh------------------hccCCCcc--cccccchHHHHHHHHHHHHHH
Q 005892 80 -------GIWMARCA-G------IEPCTLIM------------------DLEGTDGR--ERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 -------gi~~~~~~-~------~~~~~~vl------------------d~~g~~~~--~r~~~~~~~qrQrv~iAlAL~ 125 (671)
++..+... . .+++.+.. +..|+... ......+.+|+||++||+|++
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 11111100 0 01111100 11111110 011234567999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++||+||||++||+.. +..+.+++.++.++.|.|||++|||++.+. .|++++++.+ |+++..|++++++
T Consensus 157 ~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~-G~i~~~g~~~~~~ 228 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTG------RQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKA-GEIIKEAAPSELF 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEEC-CEEEEeCCHHHHh
Confidence 9999999999999999 999999999997656999999999999886 5888888888 9999999887765
Q ss_pred CC
Q 005892 203 ME 204 (671)
Q Consensus 203 ~~ 204 (671)
..
T Consensus 229 ~~ 230 (277)
T PRK13642 229 AT 230 (277)
T ss_pred cC
Confidence 43
No 124
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.9e-25 Score=232.01 Aligned_cols=177 Identities=17% Similarity=0.157 Sum_probs=131.2
Q ss_pred EEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----------
Q 005892 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----------- 79 (671)
Q Consensus 11 ~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----------- 79 (671)
.+.|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~L~Gl~----~p~~G~i~i~g~~~~~~~~~~~ 96 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDV--REGEIFVIMGLSGSGKSTLLRCINRLI----EPTSGKVLIDGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEccccChhhh
Confidence 44566666643 36899999999 999999999999999999999999999 79999742111
Q ss_pred ------ce-EeccccCC-------Ccchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCAGI-------EPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ------gi-~~~~~~~~-------~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+ ++...... ++..+. ++..|+.. .......+.+|+||++||+|++
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 01 00000000 111110 11112211 1111234677999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|||||||++||+.. +..+.+++.++.++.|.|||++|||++.+...|++++++.+ |+++..|++.+++
T Consensus 177 ~~p~illLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~-G~i~~~g~~~~~~ 249 (269)
T cd03294 177 VDPDILLMDEAFSALDPLI------RREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD-GRLVQVGTPEEIL 249 (269)
T ss_pred cCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999 99999999998755589999999999988888999998887 9999998877654
Q ss_pred C
Q 005892 203 M 203 (671)
Q Consensus 203 ~ 203 (671)
.
T Consensus 250 ~ 250 (269)
T cd03294 250 T 250 (269)
T ss_pred h
Confidence 3
No 125
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.9e-25 Score=229.89 Aligned_cols=180 Identities=14% Similarity=0.183 Sum_probs=137.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
||+++|+++.|++. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 ~l~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 1 ILETRDLKYSYPDG--TEALKGINFKA--EKGEMVALLGPNGAGKSTLFLHFNGIL----KPTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred CEEEEEEEEEeCCC--CeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEECccccch
Confidence 48999999999532 35899999999 999999999999999999999999999 799997421110
Q ss_pred -------e-Eecccc--C------CCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHHH
Q 005892 81 -------I-WMARCA--G------IEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 81 -------i-~~~~~~--~------~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL 124 (671)
+ ++.... . .+++.+ .++..|+... ......+.+|+||++||+|+
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 0 011100 0 000100 1111122111 11233456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++||+||||++||+.. +..+.+++.++.++ |.|||+||||++.+...|++++++.+ |+++..|++.++
T Consensus 153 ~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~ 224 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMG------ASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSD-GKIIKEGTPKEV 224 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEeCCHHHH
Confidence 9 9999999999999999 99999999999765 99999999999998888999999888 999999988776
Q ss_pred cCC
Q 005892 202 HME 204 (671)
Q Consensus 202 ~~~ 204 (671)
+..
T Consensus 225 ~~~ 227 (275)
T PRK13639 225 FSD 227 (275)
T ss_pred hcC
Confidence 543
No 126
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.9e-25 Score=225.46 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=135.0
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-----CCCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~q~~~-- 79 (671)
|++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. + |++|++...+
T Consensus 1 ~~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14247 1 MNKIEIRDLKVSFGQ---VEVLDGVNLEI--PDNTITALMGPSGSGKSTLLRVFNRLI----ELYPEARVSGEVYLDGQD 71 (250)
T ss_pred CceEEEEeeEEEECC---eeeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CCCCCCCCceEEEECCEE
Confidence 457999999999964 36899999999 999999999999999999999999998 4 3688742110
Q ss_pred -----------ceE-eccccC-------CCcchhh--------------------hhccCCCc------ccccccchHHH
Q 005892 80 -----------GIW-MARCAG-------IEPCTLI--------------------MDLEGTDG------RERGEDDTAFE 114 (671)
Q Consensus 80 -----------gi~-~~~~~~-------~~~~~~v--------------------ld~~g~~~------~~r~~~~~~~q 114 (671)
++. +..... .++..+. ++..|+.. .......+++|
T Consensus 72 i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 72 IFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred CCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 111 010000 1111110 11112211 11123456789
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|+|++ ++||+||||++||+.. +..+.+++.++. + |.|+|++|||++.+...|++++++.+ |+
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPEN------TAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYK-GQ 222 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEEC-Ce
Confidence 99999999999 9999999999999999 999999999985 3 79999999999988888999999887 99
Q ss_pred EEEecCcccccC
Q 005892 192 IWDSVPKPQAHM 203 (671)
Q Consensus 192 I~~~g~~~e~~~ 203 (671)
+...|++.+++.
T Consensus 223 i~~~g~~~~~~~ 234 (250)
T PRK14247 223 IVEWGPTREVFT 234 (250)
T ss_pred EEEECCHHHHHc
Confidence 999998776653
No 127
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.91 E-value=6.7e-25 Score=227.51 Aligned_cols=177 Identities=19% Similarity=0.192 Sum_probs=136.6
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 5 KLNVIDLHKRYGE---HEVLKGVSLQA--NAGDVISIIGSSGSGKSTFLRCINFLE----KPSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred cEEEeeeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEccccccc
Confidence 5999999999964 36899999999 999999999999999999999999999 78999742111
Q ss_pred -----------------ceEe-ccc-------cCCCcchh-------------------hhhccCCCcc---cccccchH
Q 005892 80 -----------------GIWM-ARC-------AGIEPCTL-------------------IMDLEGTDGR---ERGEDDTA 112 (671)
Q Consensus 80 -----------------gi~~-~~~-------~~~~~~~~-------------------vld~~g~~~~---~r~~~~~~ 112 (671)
.+-+ ... ...++..+ .++..|+... ......+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCH
Confidence 0100 000 00111111 1111233221 12234567
Q ss_pred HHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcC
Q 005892 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (671)
Q Consensus 113 ~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~ 189 (671)
+|+||+++|+|++ +++|+||||++||+.. +..+.++|.++.+. |.|||+||||++++..+|++++++.+
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~~- 227 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPEL------VGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQ- 227 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEEC-
Confidence 7999999999999 9999999999999999 99999999999764 99999999999999888999999888
Q ss_pred CeEEEecCccccc
Q 005892 190 QKIWDSVPKPQAH 202 (671)
Q Consensus 190 GkI~~~g~~~e~~ 202 (671)
|+++..|+++++.
T Consensus 228 G~i~~~~~~~~~~ 240 (257)
T PRK10619 228 GKIEEEGAPEQLF 240 (257)
T ss_pred CEEEEeCCHHHhh
Confidence 9999998877654
No 128
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=9.6e-25 Score=214.22 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=124.1
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc---
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--- 86 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~--- 86 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++... +..+...
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~-g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNI--EAGEIVALLGPSGSGKSTLLRCIAGLE----EPDSGSILID-GEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEEC-CEEccccchh
Confidence 578999999954 36899999999 999999999999999999999999999 7899974321 1111100
Q ss_pred --cCCCcchhhhhccCCCccccc----cc-chHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHH
Q 005892 87 --AGIEPCTLIMDLEGTDGRERG----ED-DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMM 156 (671)
Q Consensus 87 --~~~~~~~~vld~~g~~~~~r~----~~-~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~ 156 (671)
.......++.+...+...... .. .+.+|+||+++|+|++ +++++|||+++||+.+ +..+++++.
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~------~~~l~~~l~ 144 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT------RREVRALLK 144 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH------HHHHHHHHH
Confidence 000111111111111111111 11 5778999999999999 9999999999999999 999999999
Q ss_pred HhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 157 RLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 157 ~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
++.++.|.|+|++|||++.+...|++++++.+ |+
T Consensus 145 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 145 SLQAQLGITVVLVTHDLDEAARLADRVVVLRD-GK 178 (178)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC-CC
Confidence 98765479999999999988878888888766 53
No 129
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=5.7e-25 Score=214.83 Aligned_cols=165 Identities=11% Similarity=0.130 Sum_probs=124.5
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc--c
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--A 87 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~--~ 87 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++... +...... .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~-g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTV--EKGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVL-GKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEEC-CEEcccchHh
Confidence 468999999964 26899999999 999999999999999999999999998 7899964221 1111000 0
Q ss_pred CCCcchhhhhccCCCccccccc---chHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCC
Q 005892 88 GIEPCTLIMDLEGTDGRERGED---DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (671)
Q Consensus 88 ~~~~~~~vld~~g~~~~~r~~~---~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~ 161 (671)
......++.....+.......+ .+.+|+||+++|+|++ +++|+||||++||+.. +..+.+++.++.++
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~ 144 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPES------RREFWELLRELKKE 144 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHC
Confidence 0001111111111111111111 5788999999999999 9999999999999998 99999999999766
Q ss_pred CCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 162 RKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 162 ~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
|.|+|++|||..++...|++++++.+ |++
T Consensus 145 -g~tiii~th~~~~~~~~~d~i~~l~~-g~i 173 (173)
T cd03230 145 -GKTILLSSHILEEAERLCDRVAILNN-GRI 173 (173)
T ss_pred -CCEEEEECCCHHHHHHhCCEEEEEeC-CCC
Confidence 89999999999988878888888877 753
No 130
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.91 E-value=4.1e-25 Score=234.65 Aligned_cols=165 Identities=11% Similarity=0.123 Sum_probs=126.4
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------------ce-EeccccCC--
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------------GI-WMARCAGI-- 89 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------------gi-~~~~~~~~-- 89 (671)
..++.++++.+ .+|+++||+||||||||||+++|+|+. +|++|++...+ .+ ++......
T Consensus 6 ~~~l~~vs~~i--~~Ge~~~l~G~NGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 6 FKAVDGVNFKV--REGEVFGFLGPNGAGKTTTIRMLTTLL----RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 36899999999 999999999999999999999999999 89999743211 00 01111000
Q ss_pred -----Ccchh------------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhh
Q 005892 90 -----EPCTL------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQ 141 (671)
Q Consensus 90 -----~~~~~------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~ 141 (671)
++..+ +++..|+.. .......+++|+||++||+|++ ++|||||||+|||+..
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 11111 111222221 1122334677999999999999 9999999999999999
Q ss_pred hhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 142 AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 142 ~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
+..+++++.++.++ |+|||++||+++++...|++++++.+ |+|+..|++.++..
T Consensus 160 ------~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~-G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 160 ------RRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDH-GRIIAEGTPEELKR 213 (302)
T ss_pred ------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHHH
Confidence 99999999999765 99999999999999889999999988 99999998877643
No 131
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=5.2e-25 Score=220.57 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=124.7
Q ss_pred EEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------ce
Q 005892 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----------GI 81 (671)
Q Consensus 12 i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----------gi 81 (671)
++|+++.|++. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+ .+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDL--YAGEIIALTGKNGAGKTTLAKILAGLI----KESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEhhhHHhhcce
Confidence 67999999641 36899999999 999999999999999999999999999 89999743111 11
Q ss_pred E-ecccc--C------CCcchh--------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 82 W-MARCA--G------IEPCTL--------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 82 ~-~~~~~--~------~~~~~~--------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
. +.... . .++..+ .++..|+... ......+.+|+||+++|+|++ ++||+|||
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 153 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 1 11110 0 000000 0111122211 111234677999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|++||+.. +..+.+++.++.++ |.|+|++|||++.+...|++++++.+ |+++
T Consensus 154 t~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 154 TSGLDYKN------MERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred CccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEC
Confidence 99999999 99999999998764 89999999999988888999988887 8874
No 132
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.91 E-value=3.7e-25 Score=239.85 Aligned_cols=167 Identities=16% Similarity=0.126 Sum_probs=129.2
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----------------ce--Eecc
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-----------------GI--WMAR 85 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-----------------gi--~~~~ 85 (671)
..++.+++|.+ .+|++++|+|||||||||||++|+|+. +|++|++...+ .+ .++.
T Consensus 6 ~~~l~~vs~~i--~~Gei~~l~G~sGsGKSTLLr~L~Gl~----~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 6 KKGVNDADLAI--AKGEIFVIMGLSGSGKSTTVRMLNRLI----EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ceeEEeeEEEE--cCCCEEEEECCCCChHHHHHHHHhCCC----CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 35889999999 999999999999999999999999999 89999743111 11 1111
Q ss_pred c------cCCCcchhhh------------------hccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccC
Q 005892 86 C------AGIEPCTLIM------------------DLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (671)
Q Consensus 86 ~------~~~~~~~~vl------------------d~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~ 136 (671)
. +..+++.+.. +..|+.. .......+++|+|||+||+||+ ++||||||+++
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0 0011222211 1122221 1112234577999999999999 99999999999
Q ss_pred CChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 137 LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
||+.. +..+.+.+.++.++.|+||||||||++++...|+++++|.+ |+|+..|++++++.+
T Consensus 160 LD~~~------r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~-G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 160 LDPLI------RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKA-GEIVQVGTPDEILRN 220 (363)
T ss_pred CCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEeeCCHHHHHhC
Confidence 99999 99999999999766699999999999999989999999988 999999998887654
No 133
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.91 E-value=1e-24 Score=226.73 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=133.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC---CCeeeccC-----
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQTTK----- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~---sG~~q~~~----- 79 (671)
++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|+ +|++...+
T Consensus 3 ~~l~~~nl~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 3 TIIRVEKLAKTFNQ---HQALHAVDLNI--HHGEMVALLGPSGSGKSTLLRHLSGLI----TGDKSAGSHIELLGRTVQR 73 (262)
T ss_pred cEEEEeeEEEEeCC---eEEEecceEEE--cCCcEEEEECCCCCCHHHHHHHHhccC----CCCCCCceEEEECCEeccc
Confidence 57999999999964 36899999999 999999999999999999999999998 665 36532111
Q ss_pred -------------ce-EeccccCCCcchhhhhc---------------------------------cCCCc--ccccccc
Q 005892 80 -------------GI-WMARCAGIEPCTLIMDL---------------------------------EGTDG--RERGEDD 110 (671)
Q Consensus 80 -------------gi-~~~~~~~~~~~~~vld~---------------------------------~g~~~--~~r~~~~ 110 (671)
.+ ++.......+...+.+. .|+.. .......
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 74 EGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred ccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 00 01111010010011111 11110 0111223
Q ss_pred hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh
Q 005892 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~ 187 (671)
+.+|+||++||+|++ ++||+||||++||+.. +..+.++|.++.++.|+|||++|||++.+...|++++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~ 227 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPES------ARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR 227 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 556999999999999 9999999999999999 9999999999976558999999999999888899999988
Q ss_pred cCCeEEEecCcccc
Q 005892 188 DIQKIWDSVPKPQA 201 (671)
Q Consensus 188 ~~GkI~~~g~~~e~ 201 (671)
+ |++...|++.+.
T Consensus 228 ~-g~i~~~g~~~~~ 240 (262)
T PRK09984 228 Q-GHVFYDGSSQQF 240 (262)
T ss_pred C-CEEEEeCCHHHh
Confidence 8 999999987664
No 134
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.2e-24 Score=225.80 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=135.6
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~-- 79 (671)
+++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 10 ~~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~----~~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 10 QPQIKVENLNLWYGE---KQALKNVSMQI--PKNSVTALIGPSGCGKSTFIRCLNRMN----DLIKNCRIEGKVSIEGED 80 (258)
T ss_pred ceeEEEeeeEEEeCC---eeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CcccCCCcceEEEECCEE
Confidence 568999999999964 36899999999 999999999999999999999999998 43 788742111
Q ss_pred -------------ceEe-ccccC------CCcchh------------------hhhccCCCc------ccccccchHHHH
Q 005892 80 -------------GIWM-ARCAG------IEPCTL------------------IMDLEGTDG------RERGEDDTAFEK 115 (671)
Q Consensus 80 -------------gi~~-~~~~~------~~~~~~------------------vld~~g~~~------~~r~~~~~~~qr 115 (671)
.+.+ ..... .++..+ +++..++.. .......+.+|+
T Consensus 81 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 81 IYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ 160 (258)
T ss_pred cccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence 0100 00000 011111 111112210 111233567799
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
||++||+|++ ++||+||||++||+.. +..+.+++.++. + |.|||+||||++.+...|++++++.+ |+|
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~-G~i 231 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPIS------TARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLM-GEL 231 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 999999999985 3 79999999999998888999999988 999
Q ss_pred EEecCcccccC
Q 005892 193 WDSVPKPQAHM 203 (671)
Q Consensus 193 ~~~g~~~e~~~ 203 (671)
+..|++++++.
T Consensus 232 ~~~~~~~~~~~ 242 (258)
T PRK14268 232 IEFGQTRQIFH 242 (258)
T ss_pred EEeCCHHHHhc
Confidence 99998877654
No 135
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.8e-25 Score=230.27 Aligned_cols=183 Identities=12% Similarity=0.091 Sum_probs=137.8
Q ss_pred eEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
.|+++|+++.|+... ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~ 79 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTF--KKNKVTCVIGTTGSGKSTMIQLTNGLI----ISETGQTIVGDYAIPANL 79 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEEccccc
Confidence 589999999996421 124899999999 999999999999999999999999999 79999742111
Q ss_pred -----------ceE-eccccC--------CCcchh------------------hhhccCCC-c--ccccccchHHHHHHH
Q 005892 80 -----------GIW-MARCAG--------IEPCTL------------------IMDLEGTD-G--RERGEDDTAFEKQSA 118 (671)
Q Consensus 80 -----------gi~-~~~~~~--------~~~~~~------------------vld~~g~~-~--~~r~~~~~~~qrQrv 118 (671)
.+. +..... .+++.+ +++..+++ . .......+.+|+||+
T Consensus 80 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv 159 (289)
T PRK13645 80 KKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV 159 (289)
T ss_pred cccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 011 010000 000000 11111221 1 111234567799999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||+|++ ++|||||||++||+.. +..+++++.++.++.|+|||+||||++.+...|++++++.+ |+++..
T Consensus 160 ~laral~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~-G~i~~~ 232 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTGGLDPKG------EEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHE-GKVISI 232 (289)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999999 99999999998765589999999999988888999999888 999999
Q ss_pred cCcccccCC
Q 005892 196 VPKPQAHME 204 (671)
Q Consensus 196 g~~~e~~~~ 204 (671)
|++.+++..
T Consensus 233 g~~~~~~~~ 241 (289)
T PRK13645 233 GSPFEIFSN 241 (289)
T ss_pred CCHHHHhcC
Confidence 887766543
No 136
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1e-24 Score=247.42 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=137.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|++ ..++.+++|.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 4 ~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 4 PYISMAGIGKSFGP---VHALKSVNLTV--YPGEIHALLGENGAGKSTLMKVLSGIH----EPTKGTITINNINYNKLDH 74 (510)
T ss_pred ceEEEeeeEEEcCC---eEEeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCc----CCCccEEEECCEECCCCCH
Confidence 57999999999964 36899999999 999999999999999999999999999 79999743111
Q ss_pred ------ceE-eccccCCCcchhhh--------------------------------hccCCCcc--cccccchHHHHHHH
Q 005892 80 ------GIW-MARCAGIEPCTLIM--------------------------------DLEGTDGR--ERGEDDTAFEKQSA 118 (671)
Q Consensus 80 ------gi~-~~~~~~~~~~~~vl--------------------------------d~~g~~~~--~r~~~~~~~qrQrv 118 (671)
++- +.......+...+. +..|+... ......+++|+|||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 111 00000000000111 11122111 11123467799999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||+|++ ++|||||||++||+.. +..+.++|.++.++ |+|||+||||++.+...|++++++.+ |+++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~-G~i~~~ 226 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKE------VDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKD-GSSVCS 226 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEeee
Confidence 9999999 9999999999999999 99999999999765 99999999999999888999999988 999999
Q ss_pred cCccccc
Q 005892 196 VPKPQAH 202 (671)
Q Consensus 196 g~~~e~~ 202 (671)
|+++++.
T Consensus 227 g~~~~~~ 233 (510)
T PRK09700 227 GMVSDVS 233 (510)
T ss_pred cchhhCC
Confidence 9887764
No 137
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.9e-24 Score=226.24 Aligned_cols=182 Identities=12% Similarity=0.133 Sum_probs=134.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|++.|+++.|++. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTV--PGGSIAALVGVNGSGKSTLFKALMGFV----RLASGKISILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEhHHhhcc
Confidence 69999999999532 36899999999 999999999999999999999999999 79999743111
Q ss_pred -ceE-eccccCC---------Ccch----------------------hhhhccCCCc--ccccccchHHHHHHHHHHHHH
Q 005892 80 -GIW-MARCAGI---------EPCT----------------------LIMDLEGTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 -gi~-~~~~~~~---------~~~~----------------------~vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
.+. +...... ++.. ..++..|+.. .......+++|+||+++|+|+
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 111 1100000 0000 0011112111 011123456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++||+||||++||+.. +..+.++|.++.++ |.|||+||||++.+...|++++++ + |+++..|++.++
T Consensus 158 ~~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~-~-G~i~~~g~~~~~ 228 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKT------EARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMV-K-GTVLASGPTETT 228 (272)
T ss_pred hcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE-C-CEEEeecCHHhc
Confidence 9 9999999999999999 99999999998754 899999999999888888887555 6 999999988776
Q ss_pred cCCccc
Q 005892 202 HMETPL 207 (671)
Q Consensus 202 ~~~~~l 207 (671)
+....+
T Consensus 229 ~~~~~~ 234 (272)
T PRK15056 229 FTAENL 234 (272)
T ss_pred cCHHHH
Confidence 543333
No 138
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.91 E-value=1.1e-24 Score=221.31 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=129.8
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+|+++|+++.|+... ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 74 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSI--KKGETLGLVGESGSGKSTLARAILGLL----KPTSGSIIFDGKDLLKLSR 74 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEccccch
Confidence 488999999995420 126899999999 999999999999999999999999999 79999742111
Q ss_pred --------ceE-ecccc--CC-------Ccchh--------------------hhhccCCCc---ccccccchHHHHHHH
Q 005892 80 --------GIW-MARCA--GI-------EPCTL--------------------IMDLEGTDG---RERGEDDTAFEKQSA 118 (671)
Q Consensus 80 --------gi~-~~~~~--~~-------~~~~~--------------------vld~~g~~~---~~r~~~~~~~qrQrv 118 (671)
.+. +.... .. ++..+ .++..++.. .......+.+|+||+
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 75 RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred hhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence 110 11010 00 00000 001112210 111123456799999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||+|++ ++|||||||++||+.. +..+.+++.++.++.|.|||++|||++.+...|++++++.+ |+++..
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~ 227 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSV------QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA-GKIVEE 227 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC-CEEEec
Confidence 9999999 9999999999999998 99999999999765589999999999988888999999888 998765
Q ss_pred c
Q 005892 196 V 196 (671)
Q Consensus 196 g 196 (671)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 3
No 139
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-24 Score=228.73 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=135.6
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCC---CeeeccC-----
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK---GRSQTTK----- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~s---G~~q~~~----- 79 (671)
.+|+++|+++.|++. ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++ |++...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i--~~Ge~~~I~G~nGaGKSTLl~~l~G~~----~p~~g~~G~i~i~g~~~~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSI--PRGSWTALIGHNGSGKSTISKLINGLL----LPDDNPNSKITVDGITLTA 76 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEE--cCCCEEEEECCCCCcHHHHHHHHhccc----CCCCCCCcEEEECCEECCc
Confidence 479999999999542 235899999999 999999999999999999999999999 7877 6532110
Q ss_pred ----------ceEeccc-------cCCCcchh------------------hhhccCCCc--ccccccchHHHHHHHHHHH
Q 005892 80 ----------GIWMARC-------AGIEPCTL------------------IMDLEGTDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ----------gi~~~~~-------~~~~~~~~------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
++..+.. ...+++.+ .++..|+.. .......+.+|+||++||+
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 77 KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred CCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 1111110 00011111 011112211 1112234567999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++||+|||+++||+.. +..+.++|.++.++.|+|||++||+++.+. .|++++++.+ |+++..|+++
T Consensus 157 al~~~P~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~-G~i~~~g~~~ 228 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAG------KEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDD-GKLLAQGSPV 228 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEEC-CEEEEeCCHH
Confidence 999 9999999999999999 999999999997656899999999998875 6888888877 9999999887
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
+++..
T Consensus 229 ~~~~~ 233 (282)
T PRK13640 229 EIFSK 233 (282)
T ss_pred HHhcC
Confidence 76654
No 140
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.91 E-value=5.7e-25 Score=239.54 Aligned_cols=182 Identities=18% Similarity=0.159 Sum_probs=137.7
Q ss_pred EEEEeeeEEeccc---------------------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCC
Q 005892 10 TQLIDGDGTFNVS---------------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREM 68 (671)
Q Consensus 10 I~i~nlsk~y~~~---------------------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m 68 (671)
|+++|+.|-|+.. +...++.+++|.+ .+|++++|+||||||||||+++|+|+.
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i--~~Gei~~I~G~nGsGKSTLlr~L~Gl~---- 74 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDI--EEGEICVLMGLSGSGKSSLLRAVNGLN---- 74 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----
Confidence 4678888888632 1235789999999 999999999999999999999999999
Q ss_pred CCCCCeeeccC---------------------ceEe-ccccC-------CCcchhhh------------------hccCC
Q 005892 69 DAFKGRSQTTK---------------------GIWM-ARCAG-------IEPCTLIM------------------DLEGT 101 (671)
Q Consensus 69 ~p~sG~~q~~~---------------------gi~~-~~~~~-------~~~~~~vl------------------d~~g~ 101 (671)
+|++|++...+ ++-+ ..... .++..+.. +..|+
T Consensus 75 ~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL 154 (382)
T TIGR03415 75 PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGL 154 (382)
T ss_pred CCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 89999753221 0100 00000 11111111 11122
Q ss_pred Ccc--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcc
Q 005892 102 DGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 102 ~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
... ......+++|+||++||+|++ ++||+||||++||+.. +..+.+.|.++.++.|+||||||||++++
T Consensus 155 ~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~------r~~l~~~L~~l~~~~~~TII~iTHdl~e~ 228 (382)
T TIGR03415 155 AQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLI------RTQLQDELLELQAKLNKTIIFVSHDLDEA 228 (382)
T ss_pred chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 111 111234567999999999999 9999999999999999 99999999999776699999999999999
Q ss_pred cccccchhhhhcCCeEEEecCcccccCC
Q 005892 177 PLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 177 ~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
..+|+++++|.+ |+++..|+++++...
T Consensus 229 ~~l~DrI~vl~~-G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 229 LKIGNRIAIMEG-GRIIQHGTPEEIVLN 255 (382)
T ss_pred HHhCCEEEEEEC-CEEEEecCHHHHhhC
Confidence 889999999988 999999998887643
No 141
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-24 Score=224.82 Aligned_cols=179 Identities=11% Similarity=0.091 Sum_probs=134.2
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~-- 79 (671)
+++|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 5 ~~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~i~~~g~~ 75 (254)
T PRK14273 5 EAIIETENLNLFYTD---FKALNNINIKI--LKNSITALIGPSGCGKSTFLRTLNRMN----DLVEGIKIEGNVIYEGKN 75 (254)
T ss_pred CceEEEeeeEEEeCC---ceeecceeeEE--cCCCEEEEECCCCCCHHHHHHHHhccc----cCCcCCCCceEEEECCEe
Confidence 347999999999964 36899999999 999999999999999999999999998 55 478642111
Q ss_pred -------------ceE-eccccC------CCcchhhhh-------------------ccCCC------cccccccchHHH
Q 005892 80 -------------GIW-MARCAG------IEPCTLIMD-------------------LEGTD------GRERGEDDTAFE 114 (671)
Q Consensus 80 -------------gi~-~~~~~~------~~~~~~vld-------------------~~g~~------~~~r~~~~~~~q 114 (671)
++. +..... .+++.+... ..++. ........+++|
T Consensus 76 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 76 IYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQ 155 (254)
T ss_pred cccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHH
Confidence 010 000000 011111110 01110 011122346779
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||++||++++ ++|||||||++||+.. +..++++|.++. + +.|+|++||+++.+...|++++++.+ |+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~-G~ 226 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPIS------TGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLN-GC 226 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999999 999999999995 3 78999999999998888999998888 99
Q ss_pred EEEecCcccccC
Q 005892 192 IWDSVPKPQAHM 203 (671)
Q Consensus 192 I~~~g~~~e~~~ 203 (671)
++..|++.+++.
T Consensus 227 i~~~g~~~~~~~ 238 (254)
T PRK14273 227 IEEESSTDELFF 238 (254)
T ss_pred EEEeCCHHHHHh
Confidence 999998777654
No 142
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.91 E-value=1.5e-24 Score=220.68 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=127.8
Q ss_pred ceEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 8 CSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
++|+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVV--KRGETIALIGESGSGKSTLLAILAGLD----DGSSGEVSLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEE--cCCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeeEEECCEEcccCC
Confidence 4799999999996421 125899999999 999999999999999999999999999 89999743111
Q ss_pred ----------ceEe-ccccCC-------Ccchhh------------------hhccCCCcc--cccccchHHHHHHHHHH
Q 005892 80 ----------GIWM-ARCAGI-------EPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 ----------gi~~-~~~~~~-------~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iA 121 (671)
++.+ ...... ++..+. ++..|+... ......+.+|+||++||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence 1111 111010 111110 011122110 11123456799999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
++++ ++|||||||++||+.. +..+.+++.++.++.|.|||++|||++.+. .|++++++.+ |++++
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQT------GDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVN-GQLQE 226 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEEC-CEEEe
Confidence 9999 9999999999999998 999999999987655899999999998775 4888888877 99864
No 143
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.6e-24 Score=226.58 Aligned_cols=183 Identities=15% Similarity=0.140 Sum_probs=135.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
.++|+++|+++.|++. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 5 ~~~l~~~nl~~~~~~~-~~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 5 SVMIKVENVSFSYPNS-ENNALKNVSFEI--NEGEYVAILGHNGSGKSTISKILTGLL----KPQSGEIKIDGITISKEN 77 (271)
T ss_pred ceEEEEEeEEEEcCCC-CccceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEecCcCC
Confidence 3579999999999531 246899999999 999999999999999999999999999 79999742110
Q ss_pred ------ce-Eecccc--------CCCcchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCA--------GIEPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ------gi-~~~~~~--------~~~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
.+ ++.... ..++..+. ++..|+.. .......+.+|+||++||+|+
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL 157 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 01 001000 00111110 01112211 111123456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ ++|||||||++||+.. +..+++++.++.++.+.|+|++||+++.+. .|++++++.+ |++...|++.++
T Consensus 158 ~~~p~lllLDEP~~gLD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~-G~i~~~g~~~~~ 229 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKG------KREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSE-GKLIAQGKPKEI 229 (271)
T ss_pred HcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEEC-CEEEEecCHHHH
Confidence 9 9999999999999998 999999999987654599999999998876 6888888887 999998887766
Q ss_pred cCC
Q 005892 202 HME 204 (671)
Q Consensus 202 ~~~ 204 (671)
...
T Consensus 230 ~~~ 232 (271)
T PRK13632 230 LNN 232 (271)
T ss_pred hcC
Confidence 543
No 144
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.91 E-value=1.3e-24 Score=220.39 Aligned_cols=174 Identities=11% Similarity=0.090 Sum_probs=132.2
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------c
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------G 80 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------g 80 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+ .
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTV--PKNSVYGLLGPNGAGKSTLLKMITGIL----RPTSGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEecccccccc
Confidence 578999999964 36899999999 999999999999999999999999998 79999743111 1
Q ss_pred eEe-ccccC-------CCcchhh--------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 81 IWM-ARCAG-------IEPCTLI--------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 81 i~~-~~~~~-------~~~~~~v--------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
+.+ ..... .++..+. ++..|+... ......+.+|+||+++|+|++ ++||+|||
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP 151 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEP 151 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 111 10000 1111110 111122211 111234567999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
|++||+.. +..+.+++.++.++ |.|||++|||++.+...|++++++.+ |++...|++.+
T Consensus 152 ~~~LD~~~------~~~l~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 152 TNGLDPIG------IQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred ccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEeC-CEEEEecChhh
Confidence 99999999 99999999998654 89999999999999888999999988 99999887653
No 145
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=1.1e-24 Score=214.48 Aligned_cols=163 Identities=11% Similarity=0.080 Sum_probs=122.8
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecccc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA 87 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~ 87 (671)
++|+++|+++.| ++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++... |..+....
T Consensus 3 ~~l~~~~l~~~~-------~l~~vs~~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~-g~~~~~~~ 68 (182)
T cd03215 3 PVLEVRGLSVKG-------AVRDVSFEV--RAGEIVGIAGLVGNGQTELAEALFGLR----PPASGEITLD-GKPVTRRS 68 (182)
T ss_pred cEEEEeccEEEe-------eecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEEC-CEECCccC
Confidence 469999999988 678889999 899999999999999999999999999 7999974221 11111000
Q ss_pred ----CCCcchhhhhcc---CCCc----cccc---ccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHH
Q 005892 88 ----GIEPCTLIMDLE---GTDG----RERG---EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKT 150 (671)
Q Consensus 88 ----~~~~~~~vld~~---g~~~----~~r~---~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~ 150 (671)
......++.+.. .+.. .+.. ...+.+|+||+++|+|++ ++||+|||+++||+.. +..
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~------~~~ 142 (182)
T cd03215 69 PRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA------KAE 142 (182)
T ss_pred HHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHH------HHH
Confidence 000111111110 0111 0000 015678999999999999 9999999999999999 999
Q ss_pred HHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 151 VFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 151 v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
+.+++.++.++ |.|+|++||+++.+...|++++++.+ |++
T Consensus 143 l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~-G~i 182 (182)
T cd03215 143 IYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYE-GRI 182 (182)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecC-CcC
Confidence 99999998754 89999999999988888999988877 764
No 146
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=9e-25 Score=213.43 Aligned_cols=166 Identities=15% Similarity=0.120 Sum_probs=122.8
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecccc--
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA-- 87 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~-- 87 (671)
|+++|+++.|+.. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++... +..+....
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~-g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSI--EPGESLAIIGPSGSGKSTLARLILGLL----RPTSGRVRLD-GADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEEC-CEEcccCCHH
Confidence 5789999999642 235899999999 999999999999999999999999999 7999964321 11111000
Q ss_pred -CCCcchhhhhccCCCccc-ccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCC
Q 005892 88 -GIEPCTLIMDLEGTDGRE-RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR 162 (671)
Q Consensus 88 -~~~~~~~vld~~g~~~~~-r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~ 162 (671)
......++.....+.... .....+.+|+||+++|+|++ +++|+||||++||+.. +..+.+++.++.++
T Consensus 73 ~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~~~~~- 145 (173)
T cd03246 73 ELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG------ERALNQAIAALKAA- 145 (173)
T ss_pred HHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH------HHHHHHHHHHHHhC-
Confidence 000111111111111110 00115788999999999999 9999999999999999 99999999998754
Q ss_pred CcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 163 KTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 163 g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
|+|+|+||||++.+. .|++++++.+ |++
T Consensus 146 ~~tii~~sh~~~~~~-~~d~v~~l~~-G~i 173 (173)
T cd03246 146 GATRIVIAHRPETLA-SADRILVLED-GRV 173 (173)
T ss_pred CCEEEEEeCCHHHHH-hCCEEEEEEC-CCC
Confidence 899999999998774 6888888876 764
No 147
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.91 E-value=1.3e-24 Score=224.72 Aligned_cols=180 Identities=14% Similarity=0.074 Sum_probs=136.0
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+.. .++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 2 PLLQVSGLSKSYGGG---KGCRDVSFDL--YPGEVLGIVGESGSGKSTLLGCLAGRL----APDHGTATYIMRSGAELEL 72 (253)
T ss_pred ceEEEeeeEEEeCCc---eEeecceEEE--eCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEEeccccccccc
Confidence 479999999999642 5789999999 999999999999999999999999999 79999743211
Q ss_pred --------------ceEe-ccccC--CC-------cchh-------------------hhhccCCCc---ccccccchHH
Q 005892 80 --------------GIWM-ARCAG--IE-------PCTL-------------------IMDLEGTDG---RERGEDDTAF 113 (671)
Q Consensus 80 --------------gi~~-~~~~~--~~-------~~~~-------------------vld~~g~~~---~~r~~~~~~~ 113 (671)
++.+ ..... .. +... .++..|+.. .......+++
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGG 152 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHH
Confidence 0100 00000 00 0000 001112211 0112234667
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
|+||+++|+|++ ++||+||||++||+.. +..+.+++.++.++.|.|+|+|||+++.+...|++++++.+ |
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~-G 225 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQ-G 225 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC-C
Confidence 999999999999 9999999999999999 99999999998765589999999999998888999888887 9
Q ss_pred eEEEecCcccccC
Q 005892 191 KIWDSVPKPQAHM 203 (671)
Q Consensus 191 kI~~~g~~~e~~~ 203 (671)
+++..|++.++..
T Consensus 226 ~i~~~~~~~~~~~ 238 (253)
T TIGR02323 226 RVVESGLTDQVLD 238 (253)
T ss_pred EEEEECCHHHHhc
Confidence 9999988766543
No 148
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.91 E-value=1.3e-24 Score=225.00 Aligned_cols=178 Identities=14% Similarity=0.121 Sum_probs=136.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC----CCCeeeccC-----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA----FKGRSQTTK----- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p----~sG~~q~~~----- 79 (671)
+|+++|+++.| + ..++.++++.+ .+|++++|+||||||||||+++|+|+. +| ++|++...+
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~~~~~G~i~~~g~~i~~ 73 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTL--QRGRVLALVGGSGSGKSLTCAAALGIL----PAGVRQTAGRVLLDGKPVAP 73 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCCcCCEEEECCeeccc
Confidence 69999999999 3 36899999999 999999999999999999999999998 67 889742111
Q ss_pred ------ceE-ecccc--CCCcchh-----------------------hhhccCCCc-----ccccccchHHHHHHHHHHH
Q 005892 80 ------GIW-MARCA--GIEPCTL-----------------------IMDLEGTDG-----RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ------gi~-~~~~~--~~~~~~~-----------------------vld~~g~~~-----~~r~~~~~~~qrQrv~iAl 122 (671)
.+. +.... ...+... .++..++.. .......+.+|+||++||+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 111 11110 0110000 111123222 1122345678999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++|||||||++||+.. +..+.+++.++.++.|.|||++||+++.+...|++++++.+ |+++..|+++
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~------~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~-G~i~~~~~~~ 226 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVA------QARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSH-GRIVEQGDVE 226 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999 9999999999999998 99999999998765589999999999998888999988887 9999999877
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
+++.
T Consensus 227 ~~~~ 230 (254)
T PRK10418 227 TLFN 230 (254)
T ss_pred HHhh
Confidence 6653
No 149
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.91 E-value=1.3e-24 Score=223.86 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=134.6
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC-----CCeeeccC----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQTTK---- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~-----sG~~q~~~---- 79 (671)
+|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|+ +|++...+
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDI--PKNQVTALIGPSGCGKSTLLRSLNRMN----DLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEE--CCCCEEEEECCCCCCHHHHHHHHhccC----CCCcCCCCceEEEECCEEcc
Confidence 4899999999964 36899999999 999999999999999999999999999 777 88742110
Q ss_pred -----------ceE-eccccC------CCcchhh-------------------hhccCCC----c--ccccccchHHHHH
Q 005892 80 -----------GIW-MARCAG------IEPCTLI-------------------MDLEGTD----G--RERGEDDTAFEKQ 116 (671)
Q Consensus 80 -----------gi~-~~~~~~------~~~~~~v-------------------ld~~g~~----~--~~r~~~~~~~qrQ 116 (671)
.+- +..... .++..+. ++..|+. . .......+++|+|
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred ccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHH
Confidence 010 000000 0111110 1111332 1 1112345678999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|+++|+|++ +++|+||||++||+.. +..+++++.++.+ +.|||+||||++.+...|++++++.+ |+++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~-G~i~ 222 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIA------TGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYD-GELV 222 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 9999999999865 48999999999998888999998888 9999
Q ss_pred EecCcccccC
Q 005892 194 DSVPKPQAHM 203 (671)
Q Consensus 194 ~~g~~~e~~~ 203 (671)
..|++++++.
T Consensus 223 ~~~~~~~~~~ 232 (247)
T TIGR00972 223 EYGPTEQIFT 232 (247)
T ss_pred EeCCHHHHHh
Confidence 9998776653
No 150
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.91 E-value=1.2e-24 Score=219.08 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=124.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|+.. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~l~~~~l~~~~~~~--~~il~~is~~i--~~G~~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 1 MIEFHNVSKAYPGG--VAALHDVSLHI--RKGEFLFLTGPSGAGKTTLLKLLYGAL----TPSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred CEEEEeeeEEeCCC--ceeecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcccCCHH
Confidence 48999999999421 36899999999 999999999999999999999999999 79999742111
Q ss_pred -------ceE-eccccC-------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHH
Q 005892 80 -------GIW-MARCAG-------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 -------gi~-~~~~~~-------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL 124 (671)
.+. +..... .++..+. ++..|+... ......+++|+||+++|+|+
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred HHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 111 010000 0111110 111122111 11123456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+ +++||||||++||+.. +..+.+++.++.++ |.|+|+||||++++...|++++++.+ |+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~-G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDL------SERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDD-GR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEecC-CC
Confidence 9 9999999999999999 99999999998754 89999999999998888998888876 64
No 151
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.91 E-value=1.4e-24 Score=220.67 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=132.1
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCC-CCCCCCCeeeccC---------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQTTK--------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~-~m~p~sG~~q~~~--------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+... ..+|++|++...+
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDI--PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH
Confidence 578999999964 36899999999 99999999999999999999999998600 0026788732110
Q ss_pred ------ce-Eecccc------CCCcch-------------------hhhhccCCCcc--cc--cccchHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCA------GIEPCT-------------------LIMDLEGTDGR--ER--GEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ------gi-~~~~~~------~~~~~~-------------------~vld~~g~~~~--~r--~~~~~~~qrQrv~iAlA 123 (671)
.+ ++.... ..++.. .+++..|+... .. ....+++|+||+++|+|
T Consensus 76 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 01 011000 001111 01122233321 11 24567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++||+||||++||+.. +..++++|.++.++ .|||++|||++.+...|++++++.+ |+++..|++++
T Consensus 156 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPIS------TAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLN-GRLVEFGPTEQ 226 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeC-CEEEEecCccc
Confidence 99 9999999999999999 99999999999653 8999999999988888999999988 99999988654
No 152
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.91 E-value=1.3e-24 Score=225.22 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=136.8
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTA--PPGSLTGLLGPNGSGKSTLLRLLAGAL----RPDAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCCCEEEECCEEcccCCHHH
Confidence 689999999954 36999999999 999999999999999999999999999 79999742111
Q ss_pred ---ceE-eccccCCCcchhhhhcc-----------------------------CCCc--ccccccchHHHHHHHHHHHHH
Q 005892 80 ---GIW-MARCAGIEPCTLIMDLE-----------------------------GTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ---gi~-~~~~~~~~~~~~vld~~-----------------------------g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
.+. +...........+.+.. |+.. .......+.+|+||+++|+|+
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 111 11110000001111111 1100 001112345699999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ +++|+||||++||+.. +..+.++|.++.++ |.|||++|||++.+...|++++++.+ |+++..|+++++
T Consensus 153 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~ 224 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRA------QLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDG-GRVVAAGPPREV 224 (256)
T ss_pred hcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CCEEEecCHHHh
Confidence 9 9999999999999998 99999999999754 89999999999999888999999988 999999987766
Q ss_pred cCCccccchh
Q 005892 202 HMETPLSEFF 211 (671)
Q Consensus 202 ~~~~~l~~~f 211 (671)
.....+...|
T Consensus 225 ~~~~~~~~~~ 234 (256)
T TIGR03873 225 LTPALIRAVY 234 (256)
T ss_pred hCHHHHHHHh
Confidence 5433333333
No 153
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.91 E-value=1.9e-24 Score=219.87 Aligned_cols=176 Identities=13% Similarity=0.086 Sum_probs=131.0
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
+.++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 4 ~~~~i~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~ 74 (225)
T PRK10247 4 NSPLLQLQNVGYLAGD---AKILNNISFSL--RAGEFKLITGPSGCGKSTLLKIVASLI----SPTSGTLLFEGEDISTL 74 (225)
T ss_pred CCceEEEeccEEeeCC---ceeeeccEEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----CCCCCeEEECCEEcCcC
Confidence 3457999999999964 36899999999 999999999999999999999999998 79999742111
Q ss_pred -------ceE-eccccC------CCcch----------------hhhhccCCCc---ccccccchHHHHHHHHHHHHHH-
Q 005892 80 -------GIW-MARCAG------IEPCT----------------LIMDLEGTDG---RERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 80 -------gi~-~~~~~~------~~~~~----------------~vld~~g~~~---~~r~~~~~~~qrQrv~iAlAL~- 125 (671)
.+. +..... .++.. -.++..|+.. .......+.+|+||++||++++
T Consensus 75 ~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 75 KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred CHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 011 010000 01111 1112223321 1122334677999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
+++|+||||++||+.. +..+.+++.++.++.|.|||++|||++++. .|++++++.+++..+.+|.
T Consensus 155 ~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 155 MPKVLLLDEITSALDESN------KHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 9999999999999998 999999999987656899999999999886 5899888865465666554
No 154
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=1e-24 Score=219.22 Aligned_cols=166 Identities=20% Similarity=0.224 Sum_probs=123.5
Q ss_pred EEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----------
Q 005892 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----------- 79 (671)
Q Consensus 11 ~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----------- 79 (671)
+++|+++.|++. ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i--~~G~~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTI--KKGEFVLIVGPNGSGKSTLLRLLNGLL----GPTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEEcccCCHHHH
Confidence 368999999641 136899999999 999999999999999999999999999 79999742111
Q ss_pred --ce-EeccccC--C------Ccchh------------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH---
Q 005892 80 --GI-WMARCAG--I------EPCTL------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 80 --gi-~~~~~~~--~------~~~~~------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
.+ ++..... . ++..+ .++..|+.. .......+++|+||+++|+|++
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 01 1111100 0 00100 011112211 1122335677999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
++|||||||++||+.. +..+.+.+.++.++ |.|||++|||++++...|++++++.+ |+
T Consensus 154 ~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAG------RRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLED-GK 211 (211)
T ss_pred CEEEEcCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CC
Confidence 9999999999999999 99999999999765 89999999999998888999888876 63
No 155
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.91 E-value=2.4e-24 Score=220.98 Aligned_cols=176 Identities=18% Similarity=0.128 Sum_probs=131.3
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+.. .+|++|++...+
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTV--KKGEIHAIMGPNGSGKSTLSKTIAGHPS--YEVTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCcceEEECCEecCCCCHHH
Confidence 578999999964 36899999999 9999999999999999999999999930 048889742110
Q ss_pred ----ceE-eccccCC-------Ccchh-------------------------hhhccCCCc-c-c-ccc-cchHHHHHHH
Q 005892 80 ----GIW-MARCAGI-------EPCTL-------------------------IMDLEGTDG-R-E-RGE-DDTAFEKQSA 118 (671)
Q Consensus 80 ----gi~-~~~~~~~-------~~~~~-------------------------vld~~g~~~-~-~-r~~-~~~~~qrQrv 118 (671)
++. +...... ++..+ .++..|+.. . . ... ..+.+|+||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 111 1111000 00000 111123321 1 1 112 3678899999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc-ccchhhhhcCCeEEE
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKIWD 194 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~-~~~~~ll~~~GkI~~ 194 (671)
+||++++ ++|||||||++||+.. +..+.++|.++.+ .|.|||+||||++.+... |++++++.+ |+++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~-G~i~~ 225 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDA------LKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLD-GRIVK 225 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHH------HHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeC-CEEEE
Confidence 9999999 9999999999999999 9999999999975 489999999999998877 788888877 99999
Q ss_pred ecCccc
Q 005892 195 SVPKPQ 200 (671)
Q Consensus 195 ~g~~~e 200 (671)
.|++++
T Consensus 226 ~g~~~~ 231 (243)
T TIGR01978 226 SGDVEL 231 (243)
T ss_pred ecCHHH
Confidence 887654
No 156
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.5e-24 Score=218.17 Aligned_cols=169 Identities=17% Similarity=0.183 Sum_probs=125.3
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|.++|+++.|++. . .++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~gl~----~~~~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTF--AQGEITAIVGPSGSGKSTLLNLIAGFE----TPQSGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcCcCCHhH
Confidence 4789999999642 2 2889999 999999999999999999999999999 89999742211
Q ss_pred -ceEe-ccccCCCcchhhhhc-------------------------cCCCc--ccccccchHHHHHHHHHHHHHH---HH
Q 005892 80 -GIWM-ARCAGIEPCTLIMDL-------------------------EGTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 80 -gi~~-~~~~~~~~~~~vld~-------------------------~g~~~--~~r~~~~~~~qrQrv~iAlAL~---ev 127 (671)
.+.+ .......+...+.+. .|+.. .......+.+|+||+++|+|++ ++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 0111 111000000111111 11111 0111234566999999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+|+||||++||+.. +..+.+++.++.++.|.|||++|||++.+...|++++++.+ |+++..|
T Consensus 150 lllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 150 LLLDEPFAALDPAL------RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEEC-CEEeecC
Confidence 99999999999999 99999999999765689999999999999888999998888 9987643
No 157
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=222.31 Aligned_cols=181 Identities=9% Similarity=0.072 Sum_probs=135.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
|+|+++|+++.|++ ..+++++++.+ .+|++++|+||||||||||+++|+|+.. .+.|++|++...+
T Consensus 1 ~~~~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 1 MIAKTTNLNLFYGK---KQALFDINMQI--EQNKITALIGASGCGKSTFLRCFNRMND-KIAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred CceeeeeeEEEECC---EeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCCceEEEECCEecccCCH
Confidence 46999999999964 36899999999 9999999999999999999999999871 0025788742110
Q ss_pred -----ceE-eccccC------CCcchh--------------------hhhccCCCc------ccccccchHHHHHHHHHH
Q 005892 80 -----GIW-MARCAG------IEPCTL--------------------IMDLEGTDG------RERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 -----gi~-~~~~~~------~~~~~~--------------------vld~~g~~~------~~r~~~~~~~qrQrv~iA 121 (671)
.+. +..... .++..+ .++..++.. .......+.+|+||+++|
T Consensus 75 ~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 011 010000 011110 112223321 111233567899999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+|++ +++|+||||++||+.. +..+.+.+.++. + |+|+|+|||+++.+...|++++++.+ |+|+..|++
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~-G~i~~~g~~ 225 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPIS------SGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHL-GELIEFGES 225 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEEC-CEEEEECCH
Confidence 9999 9999999999999998 999999999985 3 89999999999998888999999888 999999987
Q ss_pred ccccC
Q 005892 199 PQAHM 203 (671)
Q Consensus 199 ~e~~~ 203 (671)
.+++.
T Consensus 226 ~~~~~ 230 (246)
T PRK14269 226 KEFFE 230 (246)
T ss_pred HHHHh
Confidence 76543
No 158
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=222.94 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=135.0
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC-
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK- 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~- 79 (671)
|+++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +| ++|++...+
T Consensus 1 ~~~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 1 MKFAIETVNLRVYYGS---NHVIKGVDLKI--PQNGVFALMGPSGCGKSTLLRTFNRLL----ELNEEARVEGEVRLFGR 71 (253)
T ss_pred CcceEEEEeEEEEeCC---eeeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CcccCCCCceEEEECCE
Confidence 3457999999999964 36899999999 999999999999999999999999998 55 478742110
Q ss_pred --------------ceE-eccccC-------CCcchhh--------------------hhccCCCc------ccccccch
Q 005892 80 --------------GIW-MARCAG-------IEPCTLI--------------------MDLEGTDG------RERGEDDT 111 (671)
Q Consensus 80 --------------gi~-~~~~~~-------~~~~~~v--------------------ld~~g~~~------~~r~~~~~ 111 (671)
.+. +..... .++..+. ++..|+.. .......+
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 151 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLS 151 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCC
Confidence 010 000000 0111110 11112210 01122345
Q ss_pred HHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 112 ~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
.+|+||++||+|++ ++||+||||++||+.. +..+.++|.++.+ +.|+|++|||++.+...|++++++.+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~ 223 (253)
T PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVG------TAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYL 223 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEEC
Confidence 67999999999999 9999999999999998 9999999999853 68999999999988888999999888
Q ss_pred CCeEEEecCcccccC
Q 005892 189 IQKIWDSVPKPQAHM 203 (671)
Q Consensus 189 ~GkI~~~g~~~e~~~ 203 (671)
|+++..|++.+++.
T Consensus 224 -G~i~~~~~~~~~~~ 237 (253)
T PRK14267 224 -GKLIEVGPTRKVFE 237 (253)
T ss_pred -CEEEEeCCHHHHHh
Confidence 99999998777653
No 159
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.7e-24 Score=250.91 Aligned_cols=185 Identities=12% Similarity=0.050 Sum_probs=142.6
Q ss_pred CcceEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----
Q 005892 6 ECCSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----- 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----- 79 (671)
.+++|+++|+++.|+... ...++.+++|.+ .+|+++||+||||||||||+|+|+|++ +|++|++...+
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v--~~Ge~~~lvG~nGsGKSTLl~~l~Gll----~p~~G~i~~~g~~~~~ 82 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSL--QRGETLAIVGESGSGKSVTALALMRLL----EQAGGLVQCDKMLLRR 82 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEE--CCCCEEEEECCCCChHHHHHHHHHcCC----CCCCeEEEECCEEecc
Confidence 356899999999995321 236899999999 999999999999999999999999999 78888742110
Q ss_pred ------------------------ceEeccc--------cCCCcchh-------------------hhhccCCCc-----
Q 005892 80 ------------------------GIWMARC--------AGIEPCTL-------------------IMDLEGTDG----- 103 (671)
Q Consensus 80 ------------------------gi~~~~~--------~~~~~~~~-------------------vld~~g~~~----- 103 (671)
+..++.. ...++..+ +++..|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 162 (623)
T PRK10261 83 RSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTIL 162 (623)
T ss_pred ccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHH
Confidence 0111110 00011111 122234431
Q ss_pred ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 104 RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 104 ~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
.......+++|+|||+||+|++ ++||+||||++||+.. +..++++++++.++.|+|||+||||++.+...|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~------~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~a 236 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTI------QAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA 236 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 1223445788999999999999 9999999999999999 999999999997666999999999999998899
Q ss_pred cchhhhhcCCeEEEecCcccccC
Q 005892 181 LEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 181 ~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
+++++|.+ |+|+..|++.+++.
T Consensus 237 dri~vl~~-G~i~~~g~~~~~~~ 258 (623)
T PRK10261 237 DRVLVMYQ-GEAVETGSVEQIFH 258 (623)
T ss_pred CEEEEeeC-CeecccCCHHHhhc
Confidence 99999988 99999998877654
No 160
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.91 E-value=2e-24 Score=218.60 Aligned_cols=171 Identities=20% Similarity=0.253 Sum_probs=125.7
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+|+++|+++.|++.. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i--~~G~~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~ 74 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSI--GKGEIVAIVGSSGSGKSTLLHLLGGLD----NPTSGEVLFNGQSLSKLSS 74 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEhhhcCH
Confidence 378999999995421 135899999999 999999999999999999999999999 79999743111
Q ss_pred ---------ce-EeccccCC-------Ccchh------------------hhhccCCCcc--cccccchHHHHHHHHHHH
Q 005892 80 ---------GI-WMARCAGI-------EPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ---------gi-~~~~~~~~-------~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAl 122 (671)
.+ ++...... ++..+ +++..|+... ......+++|+||++||+
T Consensus 75 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred hHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 11 01111000 11111 0111122111 111234567999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
+++ ++|||||||++||+.. +..+.++|.++.++.|.|||++|||++.+.. +++++++.+ |+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNN------AKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKD-GQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeC-CEec
Confidence 999 9999999999999999 9999999999976558999999999988764 788888877 8875
No 161
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-24 Score=222.38 Aligned_cols=180 Identities=12% Similarity=0.119 Sum_probs=135.9
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~-- 79 (671)
.++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 2 ~~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~~~~~~G~i~~~g~~ 72 (251)
T PRK14270 2 KIKMESKNLNLWYGE---KQALNDINLPI--YENKITALIGPSGCGKSTFLRCLNRMN----DLISNVKIEGEVLLDGKN 72 (251)
T ss_pred ccEEEEEEeEEEECC---eeeeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHHhcc----CcccCCCCccEEEECCEe
Confidence 468999999999964 36899999999 999999999999999999999999997 44 678632110
Q ss_pred -------------ceE-eccccC------CCcchh-------------------hhhccCCC------cccccccchHHH
Q 005892 80 -------------GIW-MARCAG------IEPCTL-------------------IMDLEGTD------GRERGEDDTAFE 114 (671)
Q Consensus 80 -------------gi~-~~~~~~------~~~~~~-------------------vld~~g~~------~~~r~~~~~~~q 114 (671)
.+. +..... .++..+ .++..|+. ........+.+|
T Consensus 73 i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 152 (251)
T PRK14270 73 IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQ 152 (251)
T ss_pred cccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 010 000000 011111 01111211 011223456779
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|++++ +++|+||||++||+.. +..+.++|.++.+ +.|+|+|||+++.+...|++++++.+ |+
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~-G~ 223 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPIS------TLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLM-GD 223 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEEC-Ce
Confidence 99999999999 9999999999999998 9999999999864 58999999999998888999999888 99
Q ss_pred EEEecCcccccCC
Q 005892 192 IWDSVPKPQAHME 204 (671)
Q Consensus 192 I~~~g~~~e~~~~ 204 (671)
++..|++++++.+
T Consensus 224 i~~~~~~~~~~~~ 236 (251)
T PRK14270 224 LIEFNKTEKIFLE 236 (251)
T ss_pred EEEeCCHHHHhcC
Confidence 9999998887654
No 162
>PRK10908 cell division protein FtsE; Provisional
Probab=99.90 E-value=2.3e-24 Score=218.58 Aligned_cols=170 Identities=13% Similarity=0.101 Sum_probs=127.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|... ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~l~~~~l~~~~~~~--~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 1 MIRFEHVSKAYLGG--RQALQGVTFHM--RPGEMAFLTGHSGAGKSTLLKLICGIE----RPSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred CEEEEeeEEEecCC--CeEEeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccCChh
Confidence 48999999999321 36899999999 999999999999999999999999999 79999743111
Q ss_pred -------ceE-eccccC-------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHH
Q 005892 80 -------GIW-MARCAG-------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 -------gi~-~~~~~~-------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL 124 (671)
.+. +..... .++..+. ++..++... ......+.+|+||+++|+|+
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 010 110000 0011110 111122110 11123456799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
+ ++||+||||++||+.. +..+.+++.++.++ |.|+|++|||++++...|++++++.+ |+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDAL------SEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSD-GHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEcc
Confidence 9 9999999999999998 99999999998764 89999999999999888899988888 99864
No 163
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.90 E-value=3.6e-24 Score=214.13 Aligned_cols=172 Identities=18% Similarity=0.165 Sum_probs=127.8
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecccc--
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA-- 87 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~-- 87 (671)
|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+.. ..|++|++... |..+....
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~p~~G~i~~~-g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTI--KKGEVHALMGPNGSGKSTLAKTIMGHPK--YEVTEGEILFK-GEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEE--CCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCccEEEEC-CEECCcCCHH
Confidence 478999999964 36899999999 9999999999999999999999999930 05889974321 11110000
Q ss_pred --CCCcchhhhhcc----CCCc----ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHH
Q 005892 88 --GIEPCTLIMDLE----GTDG----RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQV 154 (671)
Q Consensus 88 --~~~~~~~vld~~----g~~~----~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~el 154 (671)
......++.... ++.. .......+.+|+||+++|++++ +++|+||||++||+.. +..+.++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~------~~~l~~~ 146 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA------LRLVAEV 146 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHH
Confidence 000010111100 0000 0111346788999999999999 9999999999999998 9999999
Q ss_pred HHHhhCCCCcEEEEEecCCCcccc-cccchhhhhcCCeEEEecC
Q 005892 155 MMRLFSPRKTTLMFVIRDKTRTPL-ENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 155 l~~L~~~~g~TIl~VtHDl~~~~~-~~~~~~ll~~~GkI~~~g~ 197 (671)
+.++.++ |.|+|++||+++.+.. .+++++++.+ |++...|+
T Consensus 147 L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~~~ 188 (200)
T cd03217 147 INKLREE-GKSVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGD 188 (200)
T ss_pred HHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEEEC-CEEEEEcc
Confidence 9998754 8999999999998776 6899988887 99998883
No 164
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.6e-24 Score=245.69 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=135.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC--CCCeeeccC------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQTTK------ 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p--~sG~~q~~~------ 79 (671)
+||+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||||+|+|+. +| ++|++...+
T Consensus 4 ~~l~~~nl~~~~~~---~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~~~G~i~~~g~~~~~~ 74 (506)
T PRK13549 4 YLLEMKNITKTFGG---VKALDNVSLKV--RAGEIVSLCGENGAGKSTLMKVLSGVY----PHGTYEGEIIFEGEELQAS 74 (506)
T ss_pred ceEEEeeeEEEeCC---eEeecceeEEE--eCCeEEEEECCCCCCHHHHHHHHhCCC----CCCCCCeEEEECCEECCCC
Confidence 57999999999964 36899999999 999999999999999999999999998 55 788742110
Q ss_pred --------ce--Eeccc------cCCCcchh---------------------hhhccCCCc--ccccccchHHHHHHHHH
Q 005892 80 --------GI--WMARC------AGIEPCTL---------------------IMDLEGTDG--RERGEDDTAFEKQSALF 120 (671)
Q Consensus 80 --------gi--~~~~~------~~~~~~~~---------------------vld~~g~~~--~~r~~~~~~~qrQrv~i 120 (671)
.+ ..+.. ...++..+ +++..|+.. .......+++|+||++|
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 75 NIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHH
Confidence 01 11110 00000000 011112211 11123456779999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
|+|++ ++|||||||++||+.. +..++++|.++.++ |.|||+||||++.+...|++++++.+ |+|+..|+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d~v~~l~~-G~i~~~~~ 226 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESE------TAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRD-GRHIGTRP 226 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhcCEEEEEEC-CEEeeecc
Confidence 99999 9999999999999999 99999999999754 89999999999999888999999988 99999998
Q ss_pred ccccc
Q 005892 198 KPQAH 202 (671)
Q Consensus 198 ~~e~~ 202 (671)
++++.
T Consensus 227 ~~~~~ 231 (506)
T PRK13549 227 AAGMT 231 (506)
T ss_pred cccCC
Confidence 77654
No 165
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=2.2e-24 Score=244.15 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=136.5
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|++++|++ ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 3 ALLQLKGIDKAFPG---VKALSGAALNV--YPGRVMALVGENGAGKSTMMKVLTGIY----TRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred ceEEEeeeEEEeCC---eEEeeeeeEEE--cCCeEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCCH
Confidence 57999999999964 36899999999 999999999999999999999999999 79999743111
Q ss_pred ------ce-EeccccCCCcchhh-----------------------------hhccCCCcc--cccccchHHHHHHHHHH
Q 005892 80 ------GI-WMARCAGIEPCTLI-----------------------------MDLEGTDGR--ERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 ------gi-~~~~~~~~~~~~~v-----------------------------ld~~g~~~~--~r~~~~~~~qrQrv~iA 121 (671)
.+ ++.......+...+ ++..|+... ......+++|+||++||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 01 01000000000011 111122211 11234567799999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+|++ ++|||||||++||+.. +..+.+++.++.+. |.|||+||||++++..+|++++++.+ |+++..|++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~-G~i~~~~~~ 225 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTE------TESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRD-GQFIAEREV 225 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEEecCc
Confidence 9999 9999999999999999 99999999999754 89999999999999888999999988 999999887
Q ss_pred ccc
Q 005892 199 PQA 201 (671)
Q Consensus 199 ~e~ 201 (671)
+++
T Consensus 226 ~~~ 228 (501)
T PRK10762 226 ADL 228 (501)
T ss_pred CcC
Confidence 665
No 166
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.4e-24 Score=216.55 Aligned_cols=168 Identities=14% Similarity=0.113 Sum_probs=125.8
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+| +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i--~~g-~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTL--GPG-MYGLLGPNGAGKTTLMRILATLT----PPSSGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEE--cCC-cEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCCccccchHHH
Confidence 578999999954 36899999999 889 99999999999999999999999 89999743211
Q ss_pred --ce-EeccccC-------CCcchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---H
Q 005892 80 --GI-WMARCAG-------IEPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 80 --gi-~~~~~~~-------~~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---e 126 (671)
.+ ++..... .++..+. ++..|+.. .......+.+|+||+++|+|++ +
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 01 1111100 0111110 01112211 0111234566999999999999 9
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+||+||||++||+.. +..+.+++.++.+ +.|+|+||||++.+...+++++++.+ |+++..|
T Consensus 151 llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 151 ILIVDEPTAGLDPEE------RIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999 9999999999864 58999999999998888999988887 9998654
No 167
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.90 E-value=2e-24 Score=226.14 Aligned_cols=187 Identities=12% Similarity=0.093 Sum_probs=136.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC--------CCeeeccCc
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF--------KGRSQTTKG 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~--------sG~~q~~~g 80 (671)
||+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|+ +|++...+.
T Consensus 1 ml~~~nl~~~~~~---~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~laG~~----~p~~~~~~~~~~G~i~~~g~ 71 (272)
T PRK13547 1 MLTADHLHVARRH---RAILRDLSLRI--EPGRVTALLGRNGAGKSTLLKALAGDL----TGGGAPRGARVTGDVTLNGE 71 (272)
T ss_pred CeEEEEEEEEECC---EeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCcccccccCCceEEEECCE
Confidence 4899999999954 36899999999 999999999999999999999999998 676 776432110
Q ss_pred --------------eEeccccCCCcchhhhhc-----------------------------cCCCc--ccccccchHHHH
Q 005892 81 --------------IWMARCAGIEPCTLIMDL-----------------------------EGTDG--RERGEDDTAFEK 115 (671)
Q Consensus 81 --------------i~~~~~~~~~~~~~vld~-----------------------------~g~~~--~~r~~~~~~~qr 115 (671)
.++...........+.+. .|+.. .......+++|+
T Consensus 72 ~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151 (272)
T ss_pred EcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 001100000000111111 11110 001122356699
Q ss_pred HHHHHHHHHH------------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccch
Q 005892 116 QSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (671)
Q Consensus 116 Qrv~iAlAL~------------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~ 183 (671)
||++||++++ ++|||||||++||+.. +..+.+++.++.++.|.|||+||||++.+...|+++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH------QHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 9999999996 6999999999999999 999999999987655899999999999988889999
Q ss_pred hhhhcCCeEEEecCcccccCCccccchh
Q 005892 184 VLREDIQKIWDSVPKPQAHMETPLSEFF 211 (671)
Q Consensus 184 ~ll~~~GkI~~~g~~~e~~~~~~l~~~f 211 (671)
+++.+ |+|+..|+++++.....+...|
T Consensus 226 ~~l~~-G~i~~~g~~~~~~~~~~~~~~~ 252 (272)
T PRK13547 226 AMLAD-GAIVAHGAPADVLTPAHIARCY 252 (272)
T ss_pred EEEEC-CeEEEecCHHHHcCHHHHHHHh
Confidence 99988 9999999877665433333444
No 168
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.2e-24 Score=222.65 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=134.9
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC--C---CCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--A---FKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~--p---~sG~~q~~~-- 79 (671)
+++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. + | ++|++...+
T Consensus 10 ~~~l~i~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 10 QEVYQINGMNLWYGQ---HHALKNINLSI--PENEVTAIIGPSGCGKSTFIKTLNLMI----QMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred CceEEEeeEEEEECC---eeeEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhc----cCCCCCCCceEEEECCEE
Confidence 357999999999964 36899999999 999999999999999999999999998 4 3 578642110
Q ss_pred -------------ceE-eccccC------CCcchhhhh-------------------ccCCCc------ccccccchHHH
Q 005892 80 -------------GIW-MARCAG------IEPCTLIMD-------------------LEGTDG------RERGEDDTAFE 114 (671)
Q Consensus 80 -------------gi~-~~~~~~------~~~~~~vld-------------------~~g~~~------~~r~~~~~~~q 114 (671)
.+. +..... .++..+... ..++.. .......+.+|
T Consensus 81 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq 160 (259)
T PRK14274 81 ILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQ 160 (259)
T ss_pred ccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHH
Confidence 010 000000 011111100 112210 11122346779
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|++++ +++|+||||++||+.. +..+.++|.++. + +.|+|+||||++.+...|++++++.+ |+
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVS------TRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYM-GE 231 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999999 999999999985 3 68999999999998888999988887 99
Q ss_pred EEEecCcccccCC
Q 005892 192 IWDSVPKPQAHME 204 (671)
Q Consensus 192 I~~~g~~~e~~~~ 204 (671)
++..|++++++.+
T Consensus 232 i~~~g~~~~~~~~ 244 (259)
T PRK14274 232 LVECNDTNKMFSN 244 (259)
T ss_pred EEEECCHHHHhhC
Confidence 9999998876543
No 169
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.5e-24 Score=222.77 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=135.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC-----CCeeecc----
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQTT---- 78 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~-----sG~~q~~---- 78 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|+ +|++...
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~----~~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEI--YQSKVTAIIGPSGCGKSTFLKCLNRMN----ELESEVRVEGRVEFFNQNI 76 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEE--cCCcEEEEECCCCCCHHHHHHHHhccc----CCCCCccccceEEECCEEh
Confidence 47999999999964 26899999999 999999999999999999999999998 564 5642100
Q ss_pred -----------CceEe-ccccC------CCcchhh-------------------hhccCCCc------ccccccchHHHH
Q 005892 79 -----------KGIWM-ARCAG------IEPCTLI-------------------MDLEGTDG------RERGEDDTAFEK 115 (671)
Q Consensus 79 -----------~gi~~-~~~~~------~~~~~~v-------------------ld~~g~~~------~~r~~~~~~~qr 115 (671)
..+.+ ..... .++..+. ++..++.. .......+.+|+
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 77 YERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQ 156 (261)
T ss_pred hccccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence 00100 00000 0111100 00111110 111123567799
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc----
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED---- 188 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~---- 188 (671)
||+++|++++ ++|||||||++||+.. +..+.+.+.++....|.|||+||||+.++...|++++++.+
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~------~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~ 230 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIA------SMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENR 230 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCc
Confidence 9999999999 9999999999999998 99999999998654589999999999999888998888876
Q ss_pred CCeEEEecCcccccCCc
Q 005892 189 IQKIWDSVPKPQAHMET 205 (671)
Q Consensus 189 ~GkI~~~g~~~e~~~~~ 205 (671)
.|+++..|++++++.++
T Consensus 231 ~G~i~~~~~~~~~~~~~ 247 (261)
T PRK14258 231 IGQLVEFGLTKKIFNSP 247 (261)
T ss_pred CceEEEeCCHHHHHhCC
Confidence 39999999988876543
No 170
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.90 E-value=2.5e-24 Score=224.80 Aligned_cols=183 Identities=15% Similarity=0.166 Sum_probs=137.9
Q ss_pred cceEEEEeeeEEeccc------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-
Q 005892 7 CCSTQLIDGDGTFNVS------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~- 79 (671)
|++|+++|+++.|+.. .-..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~sG~i~~~g~ 74 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSL--KSGETVALLGRSGCGKSTLARLLVGLE----SPSQGNVSWRGE 74 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCE
Confidence 3479999999999630 0146899999999 999999999999999999999999998 79999742111
Q ss_pred ---------------ceE-ecccc--CCCc-------chh-------------------hhhccCCCc---ccccccchH
Q 005892 80 ---------------GIW-MARCA--GIEP-------CTL-------------------IMDLEGTDG---RERGEDDTA 112 (671)
Q Consensus 80 ---------------gi~-~~~~~--~~~~-------~~~-------------------vld~~g~~~---~~r~~~~~~ 112 (671)
.+. +.... .... ..+ .++..|+.. .......+.
T Consensus 75 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 154 (268)
T PRK10419 75 PLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG 154 (268)
T ss_pred eccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence 010 00000 0000 000 011112211 112233467
Q ss_pred HHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcC
Q 005892 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (671)
Q Consensus 113 ~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~ 189 (671)
+|+||++||+|++ ++|||||||++||+.. +..+.++|.++.++.|.|+|++||+++.+...|++++++.+
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~- 227 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVL------QAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDN- 227 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEEC-
Confidence 7999999999999 9999999999999998 99999999998765589999999999999888999999887
Q ss_pred CeEEEecCccccc
Q 005892 190 QKIWDSVPKPQAH 202 (671)
Q Consensus 190 GkI~~~g~~~e~~ 202 (671)
|+++..|+++++.
T Consensus 228 G~i~~~g~~~~~~ 240 (268)
T PRK10419 228 GQIVETQPVGDKL 240 (268)
T ss_pred CEEeeeCChhhcc
Confidence 9999999887754
No 171
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.4e-24 Score=223.61 Aligned_cols=183 Identities=11% Similarity=0.070 Sum_probs=134.5
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCC-CCCCCeeeccC-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREM-DAFKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m-~p~sG~~q~~~------- 79 (671)
++|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+..... .|++|++...+
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDI--EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEE--cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 57999999999964 36899999999 9999999999999999999999999861000 15788742110
Q ss_pred --------ceEe-ccccC------CCcchhh-------------------hhccCCCc------ccccccchHHHHHHHH
Q 005892 80 --------GIWM-ARCAG------IEPCTLI-------------------MDLEGTDG------RERGEDDTAFEKQSAL 119 (671)
Q Consensus 80 --------gi~~-~~~~~------~~~~~~v-------------------ld~~g~~~------~~r~~~~~~~qrQrv~ 119 (671)
++.+ ..... .++..+. ++..++.. .......+++|+||++
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 1111 00000 0111110 01111110 0112335677999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+|+|++ ++|||||||++||+.. +..+.+++.++.+ +.|||++|||++++...|++++++.+ |+++..|
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~-G~i~~~~ 245 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPIS------NAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLN-GDLVEYD 245 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHH------HHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999999 9999999999853 68999999999988888999999888 9999999
Q ss_pred CcccccCC
Q 005892 197 PKPQAHME 204 (671)
Q Consensus 197 ~~~e~~~~ 204 (671)
++++++.+
T Consensus 246 ~~~~~~~~ 253 (268)
T PRK14248 246 QTEQIFTS 253 (268)
T ss_pred CHHHHHhC
Confidence 87776543
No 172
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.90 E-value=2.3e-24 Score=216.84 Aligned_cols=166 Identities=20% Similarity=0.218 Sum_probs=124.4
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc---------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--------- 80 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g--------- 80 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i--~~G~~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTV--KKGEVVVIIGPSGSGKSTLLRCINLLE----EPDSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCccchhH
Confidence 478999999964 36899999999 999999999999999999999999999 799997431110
Q ss_pred ------e-EeccccCC-------Ccchh-------------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH
Q 005892 81 ------I-WMARCAGI-------EPCTL-------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 81 ------i-~~~~~~~~-------~~~~~-------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
+ ++...... ++..+ .++..|+.. .......+.+|+||+++|+|++
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 0 01100000 01100 001112211 1111234567999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
++|||||||++||+.. +..+.+++.++.+. |.|+|++|||++.+...|++++++.+ |+|
T Consensus 152 ~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~~-g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPEL------VGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDD-GRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CcC
Confidence 9999999999999998 99999999999764 89999999999999888999988877 764
No 173
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.90 E-value=2.2e-24 Score=217.04 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=124.4
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+.. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISI--SAGEFVFLVGPSGAGKSTLLKLIYKEE----LPTSGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcccCCHHH
Confidence 4789999999542 36899999999 999999999999999999999999998 79999742111
Q ss_pred ------ceE-eccccC-------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH
Q 005892 80 ------GIW-MARCAG-------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ------gi~-~~~~~~-------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+. +..... .++..+. ++..|+... ......+.+|+||+++|+|++
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV 152 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHH
Confidence 010 000000 0111111 111122111 111234567999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
+++|+||||++||+.. +..+.+++.++.++ |.|+|+||||++.+...|++++++.+ |++
T Consensus 153 ~~p~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~-G~~ 214 (214)
T cd03292 153 NSPTILIADEPTGNLDPDT------TWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALER-GKL 214 (214)
T ss_pred cCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CcC
Confidence 9999999999999999 99999999998654 89999999999988878888888877 764
No 174
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.5e-24 Score=222.56 Aligned_cols=183 Identities=12% Similarity=0.096 Sum_probs=134.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCC-CCCCCeeeccC-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREM-DAFKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m-~p~sG~~q~~~------- 79 (671)
.+|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+..... .|++|++...+
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDI--AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 47999999999964 36899999999 9999999999999999999999999971000 14788742111
Q ss_pred --------ceE-eccccC------CCcchh-------------------hhhccCCCc------ccccccchHHHHHHHH
Q 005892 80 --------GIW-MARCAG------IEPCTL-------------------IMDLEGTDG------RERGEDDTAFEKQSAL 119 (671)
Q Consensus 80 --------gi~-~~~~~~------~~~~~~-------------------vld~~g~~~------~~r~~~~~~~qrQrv~ 119 (671)
.+. +..... .++..+ +++..++.. .......+.+|+||++
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 010 000000 001110 011112110 1112335677999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
||+|++ ++||+||||++||+.. +..+.+++.++. + +.|||++||+++.+...|++++++.+ |+++..|
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g 237 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPIS------TGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYL-GELIEFG 237 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999998 999999999985 3 68999999999988888999999888 9999999
Q ss_pred CcccccCC
Q 005892 197 PKPQAHME 204 (671)
Q Consensus 197 ~~~e~~~~ 204 (671)
++.+++..
T Consensus 238 ~~~~~~~~ 245 (260)
T PRK10744 238 NTDTIFTK 245 (260)
T ss_pred CHHHHHhC
Confidence 87776543
No 175
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.9e-24 Score=211.79 Aligned_cols=175 Identities=11% Similarity=0.076 Sum_probs=126.6
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------- 80 (671)
.|+++|+++.|.... ...++.++++.+ .+|++++|+|||||||||||++|+|+.. .+|++|++...+.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYV--KPGTLTALMGESGAGKTTLLDVLAGRKT--AGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEE--eCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCcceEEEECCEehHHHhh
Confidence 689999999995411 146899999999 9999999999999999999999999851 0378896422110
Q ss_pred --eE-eccccCCCcchhhhhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHH
Q 005892 81 --IW-MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQV 154 (671)
Q Consensus 81 --i~-~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~el 154 (671)
+. +.......+...+.+...+... ....+.+|+||++||+|++ ++||+|||+++||+.. +..+++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~------~~~l~~~ 150 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL--LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA------AYNIVRF 150 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH--HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHH------HHHHHHH
Confidence 00 0000000000111111110000 0145788999999999999 9999999999999999 9999999
Q ss_pred HHHhhCCCCcEEEEEecCCC-cccccccchhhhhcCCeEEEec
Q 005892 155 MMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 155 l~~L~~~~g~TIl~VtHDl~-~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+.++.+. |.|+|+|||+++ .+...|++++++.+.|+++..|
T Consensus 151 l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 151 LKKLADS-GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9998754 899999999998 4667788888776548887654
No 176
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=3.2e-24 Score=210.38 Aligned_cols=169 Identities=17% Similarity=0.166 Sum_probs=125.0
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc--c
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--A 87 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~--~ 87 (671)
|+++|+++.|... ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++... +..+... .
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i--~~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~-g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLEL--KQGEKIALLGRSGSGKSTLLQLLTGDL----KPQQGEITLD-GVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CCCCCEEEEC-CEEHHHHHHH
Confidence 5789999999542 135899999999 999999999999999999999999999 7999974211 1111000 0
Q ss_pred CCCcchhhhhccCCCc---ccc-cccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhC
Q 005892 88 GIEPCTLIMDLEGTDG---RER-GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS 160 (671)
Q Consensus 88 ~~~~~~~vld~~g~~~---~~r-~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~ 160 (671)
......++.+...+.. .+. ....+.+|+||+++|+|++ ++||+||||++||+.. +..+++.+.++.
T Consensus 73 ~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~------~~~l~~~l~~~~- 145 (178)
T cd03247 73 LSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT------ERQLLSLIFEVL- 145 (178)
T ss_pred HHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHc-
Confidence 0000011111000100 000 2345778999999999999 9999999999999998 999999999984
Q ss_pred CCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 161 PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 161 ~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+ +.|+|++||+++++. .|++++++.+ |+++..|
T Consensus 146 ~-~~tii~~sh~~~~~~-~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 146 K-DKTLIWITHHLTGIE-HMDKILFLEN-GKIIMQG 178 (178)
T ss_pred C-CCEEEEEecCHHHHH-hCCEEEEEEC-CEEEecC
Confidence 3 899999999999886 5888888877 9987643
No 177
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4e-24 Score=222.00 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=136.0
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA-- 84 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~-- 84 (671)
.++|.+.|++++|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.+.+.
T Consensus 8 ~~~i~~~~~~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~iaG~~----~~~~G~v~~~G~~~~~g~ 78 (257)
T PRK14246 8 EDVFNISRLYLYIND---KAILKDITIKI--PNNSIFGIMGPSGSGKSTLLKVLNRLI----EIYDSKIKVDGKVLYFGK 78 (257)
T ss_pred hhheeeeeEEEecCC---ceeEeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCcCceeEcCEEEECCc
Confidence 468999999999965 36899999999 999999999999999999999999999 7888753221111110
Q ss_pred ------------------cccCC-------Ccchhh-------------------hhccCCCc------ccccccchHHH
Q 005892 85 ------------------RCAGI-------EPCTLI-------------------MDLEGTDG------RERGEDDTAFE 114 (671)
Q Consensus 85 ------------------~~~~~-------~~~~~v-------------------ld~~g~~~------~~r~~~~~~~q 114 (671)
..... ++..+. ++..++.. .......+.+|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred ccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 00000 011100 01112210 01112345679
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|++++ +++|+||||++||+.. +..+.+++.++.+ +.|||+|||+++.+...|++++++.+ |+
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~-g~ 229 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVN------SQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYN-GE 229 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999853 68999999999999888999998888 99
Q ss_pred EEEecCcccccCC
Q 005892 192 IWDSVPKPQAHME 204 (671)
Q Consensus 192 I~~~g~~~e~~~~ 204 (671)
+...|+++++..+
T Consensus 230 i~~~g~~~~~~~~ 242 (257)
T PRK14246 230 LVEWGSSNEIFTS 242 (257)
T ss_pred EEEECCHHHHHhC
Confidence 9999988776543
No 178
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4e-24 Score=220.69 Aligned_cols=182 Identities=14% Similarity=0.106 Sum_probs=134.6
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC--CCCeeeccC------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQTTK------ 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p--~sG~~q~~~------ 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+... .+| ++|++...+
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~-~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEI--EEKSVVAFIGPSGCGKSTFLRLFNRMNDL-IPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEE--eCCCEEEEECCCCCCHHHHHHHHhhhhcc-cCCCCCceEEEECCEecccc
Confidence 57999999999964 36899999999 99999999999999999999999997200 033 478632110
Q ss_pred ---------ceEe-ccc------cCCCcchh-------------------hhhccCCCc------ccccccchHHHHHHH
Q 005892 80 ---------GIWM-ARC------AGIEPCTL-------------------IMDLEGTDG------RERGEDDTAFEKQSA 118 (671)
Q Consensus 80 ---------gi~~-~~~------~~~~~~~~-------------------vld~~g~~~------~~r~~~~~~~qrQrv 118 (671)
++.+ ... ...++..+ .++..|+.. .......+.+|+||+
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred cccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHH
Confidence 0110 000 00011111 111112211 112234567899999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
++|++++ ++||+||||++||+.. +..+.+++.++. + +.|||+||||++.+...|++++++.+ |+++..
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~-G~~~~~ 226 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPIS------TAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYM-GEMVEY 226 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEEC-CEEEEE
Confidence 9999999 9999999999999999 999999999984 4 78999999999998888999999887 999999
Q ss_pred cCcccccCC
Q 005892 196 VPKPQAHME 204 (671)
Q Consensus 196 g~~~e~~~~ 204 (671)
|++++++.+
T Consensus 227 ~~~~~~~~~ 235 (250)
T PRK14245 227 DDTKKIFTN 235 (250)
T ss_pred CCHHHHhcC
Confidence 998877654
No 179
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.3e-24 Score=248.58 Aligned_cols=184 Identities=14% Similarity=0.117 Sum_probs=141.4
Q ss_pred ceEEEEeeeEEeccc-c-------ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC
Q 005892 8 CSTQLIDGDGTFNVS-G-------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~-~-------l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~ 79 (671)
++|+++|+++.|+.. + ...++.+++|.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i--~~Ge~~~lvG~nGsGKSTLlk~i~Gl~----~p~~G~I~~~g 385 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDL--WPGETLSLVGESGSGKSTTGRALLRLV----ESQGGEIIFNG 385 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEE--cCCCEEEEECCCCCCHHHHHHHHHcCC----CCCCcEEEECC
Confidence 579999999999521 0 135899999999 999999999999999999999999999 79999843211
Q ss_pred ----------------ce--Eecccc-CCCcchh--------------------------hhhccCCCc---ccccccch
Q 005892 80 ----------------GI--WMARCA-GIEPCTL--------------------------IMDLEGTDG---RERGEDDT 111 (671)
Q Consensus 80 ----------------gi--~~~~~~-~~~~~~~--------------------------vld~~g~~~---~~r~~~~~ 111 (671)
.+ .++... ...+... +++..|+.. .......+
T Consensus 386 ~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS 465 (623)
T PRK10261 386 QRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465 (623)
T ss_pred EECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC
Confidence 11 111100 0000000 111223321 11223456
Q ss_pred HHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 112 ~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
++|+|||+||+|++ ++||+||||++||+.. +..++++|.++.++.|.||||||||++.+..+|+++++|.+
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~------~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSI------RGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 77999999999999 9999999999999999 99999999999776699999999999999989999999988
Q ss_pred CCeEEEecCcccccCC
Q 005892 189 IQKIWDSVPKPQAHME 204 (671)
Q Consensus 189 ~GkI~~~g~~~e~~~~ 204 (671)
|+|++.|++.+++.+
T Consensus 540 -G~iv~~g~~~~i~~~ 554 (623)
T PRK10261 540 -GQIVEIGPRRAVFEN 554 (623)
T ss_pred -CEEEEecCHHHHhcC
Confidence 999999998887653
No 180
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6.8e-24 Score=216.53 Aligned_cols=176 Identities=19% Similarity=0.161 Sum_probs=131.3
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+.. ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDI--PAGETVALVGPSGSGKSTLVNLIPRFY----DVDSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----cCCCCEEEECCEEhhhCCHHH
Confidence 5789999999542 136899999999 999999999999999999999999999 79999742111
Q ss_pred ---ceEe-ccccCCCcchhhhhcc-------------------C-----------CCc--ccccccchHHHHHHHHHHHH
Q 005892 80 ---GIWM-ARCAGIEPCTLIMDLE-------------------G-----------TDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ---gi~~-~~~~~~~~~~~vld~~-------------------g-----------~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.+.+ .......+ ..+.+.. + +.. .......+.+|+||+.+|+|
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~a 152 (234)
T cd03251 74 LRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARA 152 (234)
T ss_pred HHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHH
Confidence 1111 10000000 0011100 0 100 01123456789999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ +++||||||++||+.. +..+.+++.++. + +.|||++|||++.+.. |++++++.+ |+++..|++++
T Consensus 153 l~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~-G~i~~~~~~~~ 222 (234)
T cd03251 153 LLKDPPILILDEATSALDTES------ERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLED-GKIVERGTHEE 222 (234)
T ss_pred HhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecC-CeEeeeCCHHH
Confidence 99 9999999999999999 999999999985 3 8999999999988875 888888888 99998888766
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
+..
T Consensus 223 ~~~ 225 (234)
T cd03251 223 LLA 225 (234)
T ss_pred HHH
Confidence 543
No 181
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=7.2e-24 Score=211.01 Aligned_cols=174 Identities=17% Similarity=0.126 Sum_probs=126.9
Q ss_pred eEEEEeeeEEeccc---cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecc
Q 005892 9 STQLIDGDGTFNVS---GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR 85 (671)
Q Consensus 9 ~I~i~nlsk~y~~~---~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~ 85 (671)
.|+++|+++.|+.. ....++.++++.+ .+|++++|+||||||||||+++|+|+.. -+|++|++... +..+..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i--~~Ge~~~l~G~nGsGKStLl~~i~Gl~~--~~~~~G~i~~~-g~~~~~ 77 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKA--KPGELTAIMGPSGAGKSTLLNALAGRRT--GLGVSGEVLIN-GRPLDK 77 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEE--cCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCceEEEEC-CEeCch
Confidence 48999999999641 0146999999999 9999999999999999999999999861 03788864221 111000
Q ss_pred ccCCCcchhhhhccCCCcc----c------ccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHH
Q 005892 86 CAGIEPCTLIMDLEGTDGR----E------RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVF 152 (671)
Q Consensus 86 ~~~~~~~~~vld~~g~~~~----~------r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ 152 (671)
........++.+...+... + +....+.+|+||+++|+|++ +++|+|||+++||+.. ++.+.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~------~~~l~ 151 (194)
T cd03213 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS------ALQVM 151 (194)
T ss_pred HhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH------HHHHH
Confidence 0000001111111111100 0 00145788999999999999 9999999999999998 99999
Q ss_pred HHHHHhhCCCCcEEEEEecCCC-cccccccchhhhhcCCeEEEe
Q 005892 153 QVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 153 ell~~L~~~~g~TIl~VtHDl~-~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+++.++.++ |.|+|++|||++ .+...|++++++.+ |++...
T Consensus 152 ~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~ 193 (194)
T cd03213 152 SLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYF 193 (194)
T ss_pred HHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeC-CEEEec
Confidence 999998764 999999999996 67778899988888 998764
No 182
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.4e-24 Score=220.31 Aligned_cols=179 Identities=13% Similarity=0.121 Sum_probs=133.4
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~-- 79 (671)
|++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 1 ~~~l~~~~l~~~~~~---~~~l~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~----~~~~~~~~~G~i~i~g~~ 71 (250)
T PRK14262 1 EPIIEIENFSAYYGE---KKAVKNVTMKI--FKNQITAIIGPSGCGKTTLLRSINRMN----DHIPGFRVEGKIYFKGQD 71 (250)
T ss_pred CceEEEEeeEEEeCC---ceeEeeeeEee--cCCCEEEEECCCCCCHHHHHHHHhccc----cCCCCCCcceEEEECCEE
Confidence 347999999999954 36899999999 999999999999999999999999998 43 778642111
Q ss_pred -------------ceEe-ccccC------CCcchhhhh-------------------ccCCCc------ccccccchHHH
Q 005892 80 -------------GIWM-ARCAG------IEPCTLIMD-------------------LEGTDG------RERGEDDTAFE 114 (671)
Q Consensus 80 -------------gi~~-~~~~~------~~~~~~vld-------------------~~g~~~------~~r~~~~~~~q 114 (671)
.+.+ ..... .++..+... ..|+.. .......+.+|
T Consensus 72 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 151 (250)
T PRK14262 72 IYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQ 151 (250)
T ss_pred cccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHH
Confidence 1111 00000 011111101 111110 11122345679
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|+|++ ++||+||||++||+.+ +..+.++|.++.+ +.|+|+|||+++.+...|++++++.+ |+
T Consensus 152 ~qr~~la~al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 152 QQRLCIARALAVEPEVILLDEPTSALDPIA------TQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYR-GE 222 (250)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHH------HHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999999 9999999999853 68999999999988888999988888 99
Q ss_pred EEEecCcccccC
Q 005892 192 IWDSVPKPQAHM 203 (671)
Q Consensus 192 I~~~g~~~e~~~ 203 (671)
++..|+++++..
T Consensus 223 i~~~g~~~~~~~ 234 (250)
T PRK14262 223 LIEYGPTREIVE 234 (250)
T ss_pred EEEecCHHHHHh
Confidence 999998776543
No 183
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.2e-24 Score=220.56 Aligned_cols=181 Identities=16% Similarity=0.130 Sum_probs=133.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC---CCCeeeccC-----
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA---FKGRSQTTK----- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p---~sG~~q~~~----- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+... .| ++|++...+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNK---KKALNSVSLDF--YPNEITALIGPSGSGKSTLLRSINRMNDL--NPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhccccc--CCCCCccceEEECCEECcC
Confidence 47999999999964 36899999999 99999999999999999999999998410 25 478632110
Q ss_pred ----------ceE-eccccC------CCcchhhhh-------------------ccCCCc------ccccccchHHHHHH
Q 005892 80 ----------GIW-MARCAG------IEPCTLIMD-------------------LEGTDG------RERGEDDTAFEKQS 117 (671)
Q Consensus 80 ----------gi~-~~~~~~------~~~~~~vld-------------------~~g~~~------~~r~~~~~~~qrQr 117 (671)
.+. +..... .++..+... ..++.. .......+.+|+||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred cccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 011 010000 111111110 011100 01112346779999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
+++|+|++ ++||+||||++||+.. +..+.++|.++.+ +.|||+||||++.+...|++++++.+ |+++.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~ 227 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPIS------AGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLD-GDLIE 227 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHH------HHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEEC-CEEEE
Confidence 99999999 9999999999999999 9999999999853 68999999999988888999999988 99999
Q ss_pred ecCcccccCC
Q 005892 195 SVPKPQAHME 204 (671)
Q Consensus 195 ~g~~~e~~~~ 204 (671)
.|++.+++.+
T Consensus 228 ~g~~~~~~~~ 237 (252)
T PRK14239 228 YNDTKQMFMN 237 (252)
T ss_pred eCCHHHHHhC
Confidence 9988877544
No 184
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.7e-24 Score=222.59 Aligned_cols=179 Identities=16% Similarity=0.164 Sum_probs=134.9
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~-- 79 (671)
+.+|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDI--PEKTVTAFIGPSGCGKSTFLRCLNRMN----DTIDGCRVTGKITLDGED 87 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhc----ccccCCCCceEEEECCEE
Confidence 357999999999964 36899999999 999999999999999999999999998 43 788742111
Q ss_pred -------------ce-EeccccC------CCcchhh--------------------hhccCCCc------ccccccchHH
Q 005892 80 -------------GI-WMARCAG------IEPCTLI--------------------MDLEGTDG------RERGEDDTAF 113 (671)
Q Consensus 80 -------------gi-~~~~~~~------~~~~~~v--------------------ld~~g~~~------~~r~~~~~~~ 113 (671)
.+ ++..... .++..+. ++..|+.. .......+++
T Consensus 88 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 167 (267)
T PRK14235 88 IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGG 167 (267)
T ss_pred CcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 01 0000000 0111110 11112211 0112335678
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
|+||++||+|++ ++|||||||++||+.. +..+.++|.++.+ +.|||+||||++.+...|++++++.+ |
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~-G 238 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIA------TAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHL-G 238 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEEC-C
Confidence 999999999999 9999999999999999 9999999999853 68999999999998888999988888 9
Q ss_pred eEEEecCcccccC
Q 005892 191 KIWDSVPKPQAHM 203 (671)
Q Consensus 191 kI~~~g~~~e~~~ 203 (671)
+|+..|++.+++.
T Consensus 239 ~i~~~g~~~~~~~ 251 (267)
T PRK14235 239 NLVEVGDTEKMFT 251 (267)
T ss_pred EEEEeCCHHHHHh
Confidence 9999998776653
No 185
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.90 E-value=7.2e-24 Score=216.90 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=131.8
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+.. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRI--KPGEVVGIVGRSGSGKSTLTKLIQRFY----VPENGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEECCeehHhcCHHH
Confidence 5789999999542 246899999999 999999999999999999999999999 79999742111
Q ss_pred ---ceE-eccccCCCcchhhhhc-------------------cCC-----------Cc--ccccccchHHHHHHHHHHHH
Q 005892 80 ---GIW-MARCAGIEPCTLIMDL-------------------EGT-----------DG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ---gi~-~~~~~~~~~~~~vld~-------------------~g~-----------~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.+. +.......+ ..+.+. .+. .. .......+++|+||++||+|
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 152 (237)
T cd03252 74 LRRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARA 152 (237)
T ss_pred HhhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 010 010000000 001110 010 00 01223456789999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++|||||||++||+.. +..+.+++.++. + |.|||++|||++.+. .|++++++.+ |+++..|++++
T Consensus 153 l~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~-G~i~~~~~~~~ 222 (237)
T cd03252 153 LIHNPRILIFDEATSALDYES------EHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEK-GRIVEQGSHDE 222 (237)
T ss_pred HhhCCCEEEEeCCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEEC-CEEEEEcCHHH
Confidence 99 9999999999999999 999999999985 4 899999999998885 5888888888 99999998776
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
+..
T Consensus 223 ~~~ 225 (237)
T cd03252 223 LLA 225 (237)
T ss_pred HHh
Confidence 653
No 186
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.9e-24 Score=220.21 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=134.9
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC-----CCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~-----sG~~q~~~-- 79 (671)
.++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|. +|++...+
T Consensus 2 ~~~l~~~~l~~~~~~---~~il~~~s~~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~v~~~g~~ 72 (251)
T PRK14249 2 DPKIKIRGVNFFYHK---HQVLKNINMDF--PERQITAIIGPSGCGKSTLLRALNRMN----DIVSGARLEGAVLLDNEN 72 (251)
T ss_pred CceEEEEEEEEEECC---eeEecceEEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----CccccCCcccEEEECCEE
Confidence 357999999999964 36899999999 999999999999999999999999998 665 47632110
Q ss_pred -------------ce-EeccccC------CCcchhhh-------------------hccCCCc------ccccccchHHH
Q 005892 80 -------------GI-WMARCAG------IEPCTLIM-------------------DLEGTDG------RERGEDDTAFE 114 (671)
Q Consensus 80 -------------gi-~~~~~~~------~~~~~~vl-------------------d~~g~~~------~~r~~~~~~~q 114 (671)
.+ ++..... .++..+.. +..++.. .......+.+|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 73 IYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred ccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHH
Confidence 00 0000000 01111100 0011110 01112346779
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|+|++ ++|||||||++||+.. +..+.++|.++. + +.|||+|||+++.+...|++++++.+ |+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVS------TMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLT-GD 223 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeC-Ce
Confidence 99999999999 9999999999999998 999999999984 3 79999999999999888999999988 99
Q ss_pred EEEecCcccccCCc
Q 005892 192 IWDSVPKPQAHMET 205 (671)
Q Consensus 192 I~~~g~~~e~~~~~ 205 (671)
+...|++.+++..+
T Consensus 224 i~~~~~~~~~~~~~ 237 (251)
T PRK14249 224 LVEYGRTGEIFSRP 237 (251)
T ss_pred EEEeCCHHHHHhCC
Confidence 99999887766543
No 187
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=8.1e-24 Score=215.27 Aligned_cols=174 Identities=20% Similarity=0.228 Sum_probs=129.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|+++.|+.. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i--~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSI--KPGETVAIVGPTGAGKTTLINLLMRFY----DPQKGQILIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEECCEeHHHcCHH
Confidence 37899999999532 35899999999 999999999999999999999999999 79999742111
Q ss_pred ----ceEe-ccccCCCcchhhhhcc-------------------CCCc-------------ccccccchHHHHHHHHHHH
Q 005892 80 ----GIWM-ARCAGIEPCTLIMDLE-------------------GTDG-------------RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ----gi~~-~~~~~~~~~~~vld~~-------------------g~~~-------------~~r~~~~~~~qrQrv~iAl 122 (671)
.+.+ ......... .+.+.. ++.. .......+.+|+||+++|+
T Consensus 74 ~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~ 152 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIAR 152 (229)
T ss_pred HHhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHH
Confidence 1111 000000000 111100 1100 0011345678999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
+++ ++||+|||+++||+.. +..+++.+.++. + |.|||+|||+++.+. .|++++++.+ |++...++.+
T Consensus 153 al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~~-g~~~~~~~~~ 222 (229)
T cd03254 153 AMLRDPKILILDEATSNIDTET------EKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLDD-GKIIEEGTHD 222 (229)
T ss_pred HHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEeC-CeEEEeCCHH
Confidence 999 9999999999999998 999999999984 4 899999999998876 4888888887 9999887755
Q ss_pred cc
Q 005892 200 QA 201 (671)
Q Consensus 200 e~ 201 (671)
++
T Consensus 223 ~~ 224 (229)
T cd03254 223 EL 224 (229)
T ss_pred HH
Confidence 44
No 188
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.6e-24 Score=219.64 Aligned_cols=177 Identities=13% Similarity=0.129 Sum_probs=132.8
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-----CCCCeeeccC---
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK--- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~q~~~--- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. + |++|++...+
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~~sl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 3 NIISAKDVHLSYGN---YEALHGISLDF--EEKELTALIGPSGCGKSTFLRCLNRMN----DDIENIKITGEIKFEGQNI 73 (251)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhhcc----ccccCCCcceEEEECCEEc
Confidence 47999999999964 36899999999 999999999999999999999999998 4 3678632110
Q ss_pred ------------ceE-eccccC------CCcchhh-------------------hhccCCCc------ccccccchHHHH
Q 005892 80 ------------GIW-MARCAG------IEPCTLI-------------------MDLEGTDG------RERGEDDTAFEK 115 (671)
Q Consensus 80 ------------gi~-~~~~~~------~~~~~~v-------------------ld~~g~~~------~~r~~~~~~~qr 115 (671)
++. +..... .++..+. ++..++.. .......+.+|+
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 74 YGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred ccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHH
Confidence 011 000000 1111111 11112210 111223456799
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
||+++|+|++ +++|+|||+++||+.. +..+.+.+.++. + +.|||+||||++.+...|++++++.+ |++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~-G~i 224 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPIS------SSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMN-GDL 224 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHH------HHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 999999999985 3 68999999999998888999888887 999
Q ss_pred EEecCccccc
Q 005892 193 WDSVPKPQAH 202 (671)
Q Consensus 193 ~~~g~~~e~~ 202 (671)
+..|++.+++
T Consensus 225 ~~~~~~~~~~ 234 (251)
T PRK14251 225 IEAGPTEEMF 234 (251)
T ss_pred EEeCCHHHHH
Confidence 9998877654
No 189
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.90 E-value=3.5e-24 Score=232.34 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=131.6
Q ss_pred eeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------------
Q 005892 14 DGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------------- 79 (671)
Q Consensus 14 nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------------- 79 (671)
|+++.|++. .+ ++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 4 ~l~~~~~~~---~~--~isl~i--~~Gei~~l~G~nGsGKSTLl~~iaGl~----~p~~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGDF---SL--DADFTL--PGQGVTAIFGRSGSGKTTLIRLIAGLT----RPDEGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECCE---EE--EEEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECccCccccccch
Confidence 899999642 23 899999 999999999999999999999999999 79999742111
Q ss_pred ---ce-EeccccCC-------Ccchhh----------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---HH
Q 005892 80 ---GI-WMARCAGI-------EPCTLI----------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 80 ---gi-~~~~~~~~-------~~~~~v----------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---ev 127 (671)
.+ ++...... ++..+. ++..|+.. .......+++|+||++||+|++ ++
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 01 00100000 111110 11112211 1111234677999999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCCcc
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETP 206 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~~ 206 (671)
|||||||++||+.. +..+.+.|.++.++.|+|+|+||||++++..+|++++++.+ |+++..|++.+++..+.
T Consensus 153 llLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 153 LLMDEPLAALDDPR------KYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLED-GRVAAAGPIAEVWASPD 224 (354)
T ss_pred EEEcCCCcCCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC-CEEEEECCHHHHhcCcC
Confidence 99999999999999 99999999999766689999999999998888999999988 99999999888765443
No 190
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=4.1e-24 Score=243.53 Aligned_cols=183 Identities=11% Similarity=0.118 Sum_probs=138.5
Q ss_pred ceEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeecc---
Q 005892 8 CSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTT--- 78 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~--- 78 (671)
+||+++|+++.|+..+ ...++.+++|.+ .+|++++|+||||||||||||+|+|++ +| ++|++...
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i--~~Ge~~~iiG~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~g~~ 77 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQI--EAGETLALVGESGSGKSVTALSILRLL----PSPPVVYPSGDIRFHGES 77 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEE--eCCCEEEEECCCCCcHHHHHHHHhcCC----CCCcCCccceEEEECCEe
Confidence 4799999999995311 246899999999 999999999999999999999999998 54 67874211
Q ss_pred --------------C--ceEecccc-CCCc-------ch-------------------hhhhccCCCc-----ccccccc
Q 005892 79 --------------K--GIWMARCA-GIEP-------CT-------------------LIMDLEGTDG-----RERGEDD 110 (671)
Q Consensus 79 --------------~--gi~~~~~~-~~~~-------~~-------------------~vld~~g~~~-----~~r~~~~ 110 (671)
. ++..+... ...+ .. -.++..|+.. .......
T Consensus 78 i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 78 LLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQL 157 (529)
T ss_pred cccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCccc
Confidence 0 11111100 0000 00 0111123321 1123445
Q ss_pred hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh
Q 005892 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~ 187 (671)
+++|+|||+||+|++ ++|||||||++||+.. +..+++++.++.++.|.|||+||||++.+...|++++++.
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~ 231 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSV------QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ 231 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH------HHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE
Confidence 778999999999999 9999999999999999 9999999999976568999999999999988899999998
Q ss_pred cCCeEEEecCcccccC
Q 005892 188 DIQKIWDSVPKPQAHM 203 (671)
Q Consensus 188 ~~GkI~~~g~~~e~~~ 203 (671)
+ |+|+..|++.+++.
T Consensus 232 ~-G~i~~~g~~~~~~~ 246 (529)
T PRK15134 232 N-GRCVEQNRAATLFS 246 (529)
T ss_pred C-CEEEEeCCHHHHhh
Confidence 8 99999998776643
No 191
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.90 E-value=1.9e-24 Score=219.96 Aligned_cols=170 Identities=19% Similarity=0.139 Sum_probs=128.5
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------e
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--------I 81 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g--------i 81 (671)
+.+.++++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+. .
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~~ 93 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEV--PRGERIGLIGRNGAGKSTLLRLLAGIY----PPDSGTVTVRGRVSSLLGLGG 93 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEchhhcccc
Confidence 677888888855 36999999999 999999999999999999999999998 799997432110 0
Q ss_pred Eec-cccCCCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhccccccCC
Q 005892 82 WMA-RCAGIEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (671)
Q Consensus 82 ~~~-~~~~~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~L 137 (671)
.+. ..+..++..+ +++..|+... ......+.+|+||+++|++++ ++||+||||++|
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 000 0000011111 1111222211 112344677999999999999 999999999999
Q ss_pred ChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 138 D~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
|+.. +..+.+.+.++.++ |.|||+|||+++++...|++++++.+ |+++..|
T Consensus 174 D~~~------~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAF------QEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEecC
Confidence 9998 99999999998765 89999999999998888999888877 9987654
No 192
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=7.2e-24 Score=217.05 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=130.7
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+......++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTI--PPGKTVALVGSSGCGKSTVVSLLERFY----DPTSGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEe--cCCCEEEEEeCCCCCHHHHHHHHhccC----CCCCCEEEECCEehhhcCHHH
Confidence 47899999996421235899999999 999999999999999999999999999 79999742111
Q ss_pred ---ceEe-ccccCCCcchhhhhcc-------------------CCCc-------------ccccccchHHHHHHHHHHHH
Q 005892 80 ---GIWM-ARCAGIEPCTLIMDLE-------------------GTDG-------------RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ---gi~~-~~~~~~~~~~~vld~~-------------------g~~~-------------~~r~~~~~~~qrQrv~iAlA 123 (671)
.+.+ .......+ ..+.+.. ++.. .......+.+|+||+.+|++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~a 153 (238)
T cd03249 75 LRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARA 153 (238)
T ss_pred HHhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHH
Confidence 0111 00000000 0111110 1100 00112346789999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++||+||||++||+.. +..+.++|.++. + |.|+|++||+++++. .|++++++.+ |+++..|++.+
T Consensus 154 l~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~-~~d~v~~l~~-G~i~~~~~~~~ 223 (238)
T cd03249 154 LLRNPKILLLDEATSALDAES------EKLVQEALDRAM-K-GRTTIVIAHRLSTIR-NADLIAVLQN-GQVVEQGTHDE 223 (238)
T ss_pred HhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHh-hCCEEEEEEC-CEEEEeCCHHH
Confidence 99 9999999999999999 999999999985 4 899999999999887 6999888888 99998887655
Q ss_pred cc
Q 005892 201 AH 202 (671)
Q Consensus 201 ~~ 202 (671)
+.
T Consensus 224 ~~ 225 (238)
T cd03249 224 LM 225 (238)
T ss_pred Hh
Confidence 43
No 193
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.7e-24 Score=219.97 Aligned_cols=177 Identities=15% Similarity=0.123 Sum_probs=132.5
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC---
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK--- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~--- 79 (671)
++|++.|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +| ++|++...+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 2 NKFNIENLDLFYGE---NQALKSINLPI--PARQVTALIGPSGCGKSTLLRCLNRMN----DLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred CeEEEeccEEEECC---eeeeecceEEe--cCCCEEEEECCCCCCHHHHHHHHHhhc----ccccCCCCceEEEECCEEc
Confidence 47999999999964 36899999999 999999999999999999999999998 54 478632110
Q ss_pred -----------ceEe-ccccC------CCcchhhhh-------------------ccCCCc------ccccccchHHHHH
Q 005892 80 -----------GIWM-ARCAG------IEPCTLIMD-------------------LEGTDG------RERGEDDTAFEKQ 116 (671)
Q Consensus 80 -----------gi~~-~~~~~------~~~~~~vld-------------------~~g~~~------~~r~~~~~~~qrQ 116 (671)
++.+ ..... .++..+... ..++.. .......+.+|+|
T Consensus 73 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 73 YGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred ccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHH
Confidence 0110 00000 011111100 011110 0111234567999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|++||++++ ++||+||||++||+.. +..+.+++.++.+ +.|||+|||+++.+...|++++++.+ |+|+
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~-G~i~ 223 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIA------THKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLM-GELV 223 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999998 9999999999864 58999999999998888999999988 9999
Q ss_pred EecCccccc
Q 005892 194 DSVPKPQAH 202 (671)
Q Consensus 194 ~~g~~~e~~ 202 (671)
..|++.++.
T Consensus 224 ~~g~~~~~~ 232 (249)
T PRK14253 224 EHDDTQVIF 232 (249)
T ss_pred EeCCHHHHH
Confidence 998876654
No 194
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.90 E-value=6.6e-24 Score=201.60 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=117.9
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCC
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI 89 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~ 89 (671)
|+++|+++.|+.. .++.++++.. .+|++++|+||||||||||+++|+|+. +|++|+ +++.+..
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~--~~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~------i~~~~~~-- 63 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTI--NPGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGI------VTWGSTV-- 63 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEE--CCCCEEEEECCCCCCHHHHHHHHcCCC----CCCceE------EEECCeE--
Confidence 4689999999643 6899999999 999999999999999999999999999 799995 3443210
Q ss_pred CcchhhhhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEE
Q 005892 90 EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL 166 (671)
Q Consensus 90 ~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TI 166 (671)
...++.. .+.+|+||+++|+|++ +++++|||+++||+.. +..+.++++++ +.|+
T Consensus 64 -~i~~~~~------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~----~~ti 120 (144)
T cd03221 64 -KIGYFEQ------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES------IEALEEALKEY----PGTV 120 (144)
T ss_pred -EEEEEcc------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHc----CCEE
Confidence 0111111 5788999999999999 9999999999999998 99999999886 3699
Q ss_pred EEEecCCCcccccccchhhhhcCCe
Q 005892 167 MFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 167 l~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
|++||+++.+...|++++++.+ |+
T Consensus 121 l~~th~~~~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 121 ILVSHDRYFLDQVATKIIELED-GK 144 (144)
T ss_pred EEEECCHHHHHHhCCEEEEEeC-CC
Confidence 9999999998888898888876 64
No 195
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7e-24 Score=221.32 Aligned_cols=181 Identities=17% Similarity=0.126 Sum_probs=136.0
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-----CCCCeeeccC-
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK- 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~q~~~- 79 (671)
+.++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. + |++|++...+
T Consensus 17 ~~~~l~~~nl~~~~~~---~~il~~vsl~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~i~~~g~ 87 (267)
T PRK14237 17 EEIALSTKDLHVYYGK---KEAIKGIDMQF--EKNKITALIGPSGSGKSTYLRSLNRMN----DTIDIARVTGQILYRGI 87 (267)
T ss_pred CCeEEEEeeEEEEECC---eeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhcc----CccCCCCcceEEEECCE
Confidence 3457999999999954 46899999999 999999999999999999999999998 4 4688742111
Q ss_pred --------------ceEe-ccccC------CCcchhhh-------------------hccCCCc------ccccccchHH
Q 005892 80 --------------GIWM-ARCAG------IEPCTLIM-------------------DLEGTDG------RERGEDDTAF 113 (671)
Q Consensus 80 --------------gi~~-~~~~~------~~~~~~vl-------------------d~~g~~~------~~r~~~~~~~ 113 (671)
++.+ ..... .++..+.. +..++.. .......+.+
T Consensus 88 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 167 (267)
T PRK14237 88 DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGG 167 (267)
T ss_pred EcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHH
Confidence 0110 00000 01111111 1111110 1112335677
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
|+||+++|+|++ ++|||||||++||+.. +..+.+++.++. + +.|||+|||+++.+...|++++++.+ |
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~-G 238 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPIS------TMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYL-G 238 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEEC-C
Confidence 999999999999 9999999999999998 999999999985 3 68999999999998888999999988 9
Q ss_pred eEEEecCcccccCC
Q 005892 191 KIWDSVPKPQAHME 204 (671)
Q Consensus 191 kI~~~g~~~e~~~~ 204 (671)
+++..|++.+++..
T Consensus 239 ~i~~~g~~~~~~~~ 252 (267)
T PRK14237 239 DLIEYDKTRNIFTN 252 (267)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999998776543
No 196
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.90 E-value=4.9e-24 Score=218.51 Aligned_cols=178 Identities=18% Similarity=0.197 Sum_probs=134.0
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc-----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----------- 78 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~----------- 78 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEV--PTGSLVALLGPSGSGKSTLLRIIAGLE----QPDSGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcCcCChhh
Confidence 478999999964 36999999999 999999999999999999999999998 7899974211
Q ss_pred CceEe-ccccC-------CCcchhhh------------------hccCCCc--ccccccchHHHHHHHHHHHHHH---HH
Q 005892 79 KGIWM-ARCAG-------IEPCTLIM------------------DLEGTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 79 ~gi~~-~~~~~-------~~~~~~vl------------------d~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---ev 127 (671)
.++.+ ..... .++..+.. +..++.. .......+.+|+||+++|++++ ++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 00000 01111100 0111111 0111224566999999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
+|+|||+++||+.+ +..+.+++.++.++.|.|+|++||+++.+...|++++++.+ |+++..|+++++..
T Consensus 152 lllDEP~~~LD~~~------~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~-g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 152 LLLDEPFGALDAKV------RKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSN-GKIEQIGSPDEVYD 220 (237)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEEC-CEEEEecCHHHHHc
Confidence 99999999999999 99999999998765589999999999988888999988887 99999988776643
No 197
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.90 E-value=6.3e-24 Score=214.09 Aligned_cols=170 Identities=18% Similarity=0.172 Sum_probs=126.3
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
++++|+++.|.. .+.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 69 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNV--ADGEIVAIMGPSGAGKSTLLNLIAGFI----EPASGSIKVNDQSHTGLAPYQ 69 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEE--eCCcEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEcccCChhc
Confidence 468999999952 345889999 999999999999999999999999999 89999743211
Q ss_pred -ce-EeccccCCCcchhhhhc-------------------------cCCCc--ccccccchHHHHHHHHHHHHHH---HH
Q 005892 80 -GI-WMARCAGIEPCTLIMDL-------------------------EGTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 80 -gi-~~~~~~~~~~~~~vld~-------------------------~g~~~--~~r~~~~~~~qrQrv~iAlAL~---ev 127 (671)
.+ ++...........+.+. .|+.. .......+.+|+||+++|++++ ++
T Consensus 70 ~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 70 RPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred cceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 01 11111000000111111 11111 0011223556999999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
+|+||||++||+.. +..+.++|.++.++.|+|||+|||+++++...|++++++.+ |+++..|.
T Consensus 150 lllDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLL------REEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEEC-CeEEEecC
Confidence 99999999999999 99999999998765589999999999988888999998887 99988764
No 198
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=4.8e-24 Score=237.56 Aligned_cols=182 Identities=18% Similarity=0.116 Sum_probs=136.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce-Eeccc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-WMARC 86 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi-~~~~~ 86 (671)
+|+.+.|+++.|+......++.+++|.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.. .+...
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI--~~GEivgIiGpNGSGKSTLLkiLaGLl----~P~sGeI~I~G~~~~i~~~ 93 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEV--PEGEIVGIIGLNGSGKSTLSNLIAGVT----MPNKGTVDIKGSAALIAIS 93 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEE--eCCCEEEEEcCCCCCHHHHHHHHhCCC----CCCceEEEECCEeeeEEec
Confidence 3677788877775422346899999999 999999999999999999999999999 8999975322110 00000
Q ss_pred -------cCCCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhccccccC
Q 005892 87 -------AGIEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (671)
Q Consensus 87 -------~~~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~ 136 (671)
...++..+ +++..++... ......+++|+||++||+|++ ++|||||||++
T Consensus 94 ~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 94 SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 00111110 1122233211 122345678999999999999 99999999999
Q ss_pred CChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 137 LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
||+.. +..++++|.++.+ .|.|||+||||++.+...|++++++.+ |+++..|+++++..
T Consensus 174 LD~~s------r~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~-GkIv~~G~~~el~~ 232 (549)
T PRK13545 174 GDQTF------TKKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALWLHY-GQVKEYGDIKEVVD 232 (549)
T ss_pred CCHHH------HHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 99998 9999999999865 489999999999998888999998888 99999998877653
No 199
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.7e-24 Score=212.11 Aligned_cols=175 Identities=13% Similarity=0.018 Sum_probs=128.3
Q ss_pred eEEEEeeeEEeccc-cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC---CCCCeeeccC-----
Q 005892 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD---AFKGRSQTTK----- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~-~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~---p~sG~~q~~~----- 79 (671)
.+.++|+++.|... +...++.++++.+ .+|++++|+||||||||||+++|+|+. + |++|++...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~~~~G~i~i~g~~~~~ 76 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVV--KPGEMVLVLGRPGSGCSTLLKALANRT----EGNVSVEGDIHYNGIPYKE 76 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEE--CCCcEEEEECCCCCCHHHHHHHhcccC----CCCCCcceEEEECCEECcc
Confidence 57899999999642 2456999999999 999999999999999999999999998 6 7889742111
Q ss_pred -------ceEe-ccccCCCcchhhhhccCCC----cccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhC
Q 005892 80 -------GIWM-ARCAGIEPCTLIMDLEGTD----GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAAN 144 (671)
Q Consensus 80 -------gi~~-~~~~~~~~~~~vld~~g~~----~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~ 144 (671)
.+.+ .......+...+.+..... ........+.+|+||+++|+|++ ++||+|||+++||+..
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~--- 153 (202)
T cd03233 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST--- 153 (202)
T ss_pred chhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHH---
Confidence 0100 0000011111222221111 12223445788999999999999 9999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCcEEEEEec-CCCcccccccchhhhhcCCeEEEec
Q 005892 145 KPLLKTVFQVMMRLFSPRKTTLMFVIR-DKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 145 ~~~~~~v~ell~~L~~~~g~TIl~VtH-Dl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
++.+.+++.++.++.+.|+|+++| +.+.+...|++++++.+ |+++..|
T Consensus 154 ---~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 154 ---ALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred ---HHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 999999999997654677666655 45777778999999888 9987653
No 200
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.90 E-value=1.2e-23 Score=217.29 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=131.5
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+.. .+|++|++...+
T Consensus 6 ~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNE---NEILKGLNLSI--NKGEIHAIMGPNGSGKSTLSKVIAGHPA--YKILEGDILFKGESILDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCC---EEeeecceeEE--cCCcEEEEECCCCCCHHHHHHHHcCCCc--CcCCCceEEECCEEcccCCh
Confidence 36999999999964 36899999999 9999999999999999999999999720 058889742110
Q ss_pred ------ceEe-ccccC-------CCcch-------------------------hhhhccCCCc---ccccc-cchHHHHH
Q 005892 80 ------GIWM-ARCAG-------IEPCT-------------------------LIMDLEGTDG---RERGE-DDTAFEKQ 116 (671)
Q Consensus 80 ------gi~~-~~~~~-------~~~~~-------------------------~vld~~g~~~---~~r~~-~~~~~qrQ 116 (671)
++.+ ..... .++.. ..+...|+.. ..... ..+.+|+|
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHH
Confidence 1111 00000 00000 0112223321 11112 36788999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc-ccchhhhhcCCeE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKI 192 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~-~~~~~ll~~~GkI 192 (671)
|+++|+|++ ++||+||||++||+.+ +..+.++|.++.+ .|.|||++|||++.+... |++++++.+ |++
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~-G~i 230 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDA------LKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQN-GKI 230 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeC-CEE
Confidence 999999999 9999999999999999 9999999999875 489999999999888765 778888877 999
Q ss_pred EEecCcc
Q 005892 193 WDSVPKP 199 (671)
Q Consensus 193 ~~~g~~~ 199 (671)
+..|+++
T Consensus 231 ~~~~~~~ 237 (252)
T CHL00131 231 IKTGDAE 237 (252)
T ss_pred EEecChh
Confidence 9998765
No 201
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.90 E-value=1.5e-23 Score=203.71 Aligned_cols=158 Identities=15% Similarity=0.079 Sum_probs=120.3
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--ceE-eccc
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GIW-MARC 86 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--gi~-~~~~ 86 (671)
|+++|+++.|... ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+ .+- +...
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~~~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEI--KPGDRLLITGPSGTGKSSLFRALAGLW----PWGSGRIGMPEGEDLLFLPQR 72 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCCceEEEECCC
Confidence 4689999999532 36899999999 999999999999999999999999999 79999753221 111 1111
Q ss_pred cCCCcchhhhhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCC
Q 005892 87 AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK 163 (671)
Q Consensus 87 ~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g 163 (671)
.... ...+.+..... .....+.+|+||+++|+|++ +++|+||||++||+.. +..+.+++.++ +
T Consensus 73 ~~~~-~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~~----~ 138 (166)
T cd03223 73 PYLP-LGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES------EDRLYQLLKEL----G 138 (166)
T ss_pred Cccc-cccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH------HHHHHHHHHHh----C
Confidence 1111 11222222111 23456889999999999999 9999999999999998 89999998876 5
Q ss_pred cEEEEEecCCCcccccccchhhhhcCC
Q 005892 164 TTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 164 ~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
.|+|++|||++.. ..|++++++.+.|
T Consensus 139 ~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 139 ITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 7999999999765 4788888887744
No 202
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.90 E-value=7e-24 Score=213.55 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=123.6
Q ss_pred EEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------ceE
Q 005892 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------GIW 82 (671)
Q Consensus 11 ~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------gi~ 82 (671)
+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+ .+.
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~i~ 71 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEV--KPGEFLAIVGPNGAGKSTLLKAILGLL----KPTSGSIRVFGKPLEKERKRIG 71 (213)
T ss_pred CcccceeEECC---EEeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHcCCC----CCCCCEEEECCccHHHHHhheE
Confidence 36799999954 36899999999 999999999999999999999999999 79999743211 111
Q ss_pred -eccccCCC--cchhhhhc-----------------------------cCCCc--ccccccchHHHHHHHHHHHHHH---
Q 005892 83 -MARCAGIE--PCTLIMDL-----------------------------EGTDG--RERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 83 -~~~~~~~~--~~~~vld~-----------------------------~g~~~--~~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
+....... ....+.+. .|+.. .......+++|+||+++|+|++
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 11110000 00011111 11111 0111234566999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
++||+||||++||+.. +..+.+++.++.+ .|.|+|++|||++++...|++++++.+ | ++..
T Consensus 152 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~-~-~~~~ 212 (213)
T cd03235 152 DLLLLDEPFAGVDPKT------QEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNR-T-VVAS 212 (213)
T ss_pred CEEEEeCCcccCCHHH------HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcC-c-Eeec
Confidence 9999999999999999 9999999999876 489999999999998888999888866 5 5544
No 203
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.5e-24 Score=218.18 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=132.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC--C---CCCeeeccC----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--A---FKGRSQTTK---- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~--p---~sG~~q~~~---- 79 (671)
+|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. + | ++|++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDI--EENQVTALIGPSGCGKSTFLRTLNRMN----DLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----cccCCCCCceEEEECCEEcc
Confidence 6899999999964 36899999999 999999999999999999999999987 3 2 578642111
Q ss_pred -----------ce-EeccccC------CCcchhhhhcc-------------------CCCc------ccccccchHHHHH
Q 005892 80 -----------GI-WMARCAG------IEPCTLIMDLE-------------------GTDG------RERGEDDTAFEKQ 116 (671)
Q Consensus 80 -----------gi-~~~~~~~------~~~~~~vld~~-------------------g~~~------~~r~~~~~~~qrQ 116 (671)
.+ ++..... .++..+..... ++.. .......+.+|+|
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred ccccchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 01 0010000 01111111001 1100 0112234677999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|++||+|++ ++||+||||++||+.+ +..+.+++.++. + +.|||+||||++.+...|++++++.+ |+++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~-G~i~ 224 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPIS------TLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLN-GEIV 224 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 999999999984 3 78999999999988888999988888 9999
Q ss_pred EecCcccccC
Q 005892 194 DSVPKPQAHM 203 (671)
Q Consensus 194 ~~g~~~e~~~ 203 (671)
..|++.+++.
T Consensus 225 ~~~~~~~~~~ 234 (250)
T PRK14240 225 EFGDTVDLFT 234 (250)
T ss_pred EeCCHHHHHh
Confidence 9988776553
No 204
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.8e-24 Score=219.27 Aligned_cols=179 Identities=13% Similarity=0.136 Sum_probs=133.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC--C---CCCeeeccC---
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--A---FKGRSQTTK--- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~--p---~sG~~q~~~--- 79 (671)
..|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. + | ++|++...+
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~v~~~g~~i 73 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDF--PENSVTAIIGPSGCGKSTVLRSINRMH----DLVPSARVTGKILLDDTDI 73 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHHhcc----cCCCCCCCceEEEECCEEc
Confidence 36999999999964 36899999999 999999999999999999999999997 4 3 578632110
Q ss_pred ------------ceE-eccccC-------CCcchhh-------------------hhccCCCc------ccccccchHHH
Q 005892 80 ------------GIW-MARCAG-------IEPCTLI-------------------MDLEGTDG------RERGEDDTAFE 114 (671)
Q Consensus 80 ------------gi~-~~~~~~-------~~~~~~v-------------------ld~~g~~~------~~r~~~~~~~q 114 (671)
.+. +..... .++..+. ++..++.. .......+.+|
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14256 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQ 153 (252)
T ss_pred ccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHH
Confidence 010 000000 0011100 01112211 01123356779
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|++++ ++||+||||++||+.. +..+.++|.++.+ +.|||+|||+++.+...|++++++.+ |+
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPIS------TLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYM-GD 224 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999964 58999999999998888999999888 99
Q ss_pred EEEecCcccccCC
Q 005892 192 IWDSVPKPQAHME 204 (671)
Q Consensus 192 I~~~g~~~e~~~~ 204 (671)
|+..|++++++.+
T Consensus 225 i~~~~~~~~~~~~ 237 (252)
T PRK14256 225 LVECGETKKIFTT 237 (252)
T ss_pred EEEeCCHHHHHhC
Confidence 9999988776543
No 205
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.4e-24 Score=221.88 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=133.8
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-----CCCCeeeccC---
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK--- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~q~~~--- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. + |++|++...+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~~~~~~p~~G~v~~~g~~i 82 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDI--PRGKVTALIGPSGCGKSTVLRSLNRMN----DLIEGCSLKGRVLFDGTDL 82 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----cccCCCCCceEEEECCEEc
Confidence 57999999999964 36899999999 999999999999999999999999997 4 5788743111
Q ss_pred ------------ce-EeccccC------CCcchhh-----------------hhccCCCc------ccccccchHHHHHH
Q 005892 80 ------------GI-WMARCAG------IEPCTLI-----------------MDLEGTDG------RERGEDDTAFEKQS 117 (671)
Q Consensus 80 ------------gi-~~~~~~~------~~~~~~v-----------------ld~~g~~~------~~r~~~~~~~qrQr 117 (671)
.+ ++..... .++..+. ++..++.. .......+.+|+||
T Consensus 83 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 83 YDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred ccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 01 0010000 0011100 01111100 01112345679999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc------
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED------ 188 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~------ 188 (671)
++||+|++ ++||+||||++||+.. +..+.++|.++. + +.|||+||||++++...|++++++.+
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~------~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPIS------TLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccccc
Confidence 99999999 9999999999999999 999999999985 3 68999999999999889999999885
Q ss_pred ----CCeEEEecCcccccC
Q 005892 189 ----IQKIWDSVPKPQAHM 203 (671)
Q Consensus 189 ----~GkI~~~g~~~e~~~ 203 (671)
.|++++.|++.+++.
T Consensus 235 ~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 235 SGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cccccceEEEeCCHHHHHh
Confidence 367899998877764
No 206
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.7e-24 Score=219.68 Aligned_cols=179 Identities=15% Similarity=0.148 Sum_probs=133.0
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC---
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK--- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~--- 79 (671)
++|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 3 ~~l~i~~v~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~laGl~----~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 3 KRIDVKDLNIYYGS---FHAVEDVNLNI--EPRSVTAFIGPSGCGKSTVLRTLNRMH----EVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred ccEEEeeEEEEECC---EeeeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhccC----CcccCCCcceEEEECCEec
Confidence 36999999999964 36899999999 999999999999999999999999998 43 688743111
Q ss_pred ------------ceEe-ccccC-------CCcchhh-------------------hhccCCCc------ccccccchHHH
Q 005892 80 ------------GIWM-ARCAG-------IEPCTLI-------------------MDLEGTDG------RERGEDDTAFE 114 (671)
Q Consensus 80 ------------gi~~-~~~~~-------~~~~~~v-------------------ld~~g~~~------~~r~~~~~~~q 114 (671)
.+.+ ..... .++..+. ++..|+.. .......+.+|
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 74 YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred cccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 0110 00000 0111110 01112210 01113346779
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh----
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE---- 187 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~---- 187 (671)
+||++||+|++ +++|+||||++||+.. +..+.+++.++. + +.|||+|||+++.+...|++++++.
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~ 225 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPIS------TLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEAT 225 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccC
Confidence 99999999999 9999999999999998 999999999985 3 6899999999999888899988886
Q ss_pred -cCCeEEEecCcccccC
Q 005892 188 -DIQKIWDSVPKPQAHM 203 (671)
Q Consensus 188 -~~GkI~~~g~~~e~~~ 203 (671)
+.|+|+..|++.+++.
T Consensus 226 ~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 226 GKPGRLVEIDDTEKIFS 242 (258)
T ss_pred CCCceEEecCCHHHHHh
Confidence 2499999998877654
No 207
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6.3e-24 Score=216.96 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=133.7
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc-----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----------- 78 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~----------- 78 (671)
|.++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|..|++...
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~g~~----~~~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDI--KEGEFFTLLGPSGCGKTTLLRLIAGFE----TPTSGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcCcCChhh
Confidence 468999999964 36999999999 999999999999999999999999999 7888963211
Q ss_pred CceEe-ccccC-------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---HH
Q 005892 79 KGIWM-ARCAG-------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 79 ~gi~~-~~~~~-------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---ev 127 (671)
..+.+ ..... .++..+. ++..|+... ......+.+|+||+++|++++ ++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 00000 0111111 111122211 111234567999999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
+|+|||++|||+.. ++.+.+++.++.++.|.|||++||++.++...|++++++.+ |+++..|++++..
T Consensus 152 lllDEP~~gLD~~~------~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~-G~~~~~~~~~~~~ 219 (232)
T cd03300 152 LLLDEPLGALDLKL------RKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNK-GKIQQIGTPEEIY 219 (232)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEecCCHHHHH
Confidence 99999999999999 99999999998764589999999999988888999998888 9999888766554
No 208
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=8.1e-24 Score=240.61 Aligned_cols=183 Identities=15% Similarity=0.128 Sum_probs=139.9
Q ss_pred cceEEEEeeeEEecc--ccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc-Cc---
Q 005892 7 CCSTQLIDGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-KG--- 80 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~--~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~-~g--- 80 (671)
.++|+++|+++.|+. .+...++.+++|.+ .+|++++|+|||||||||||++|+|+. +|++|++... ++
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~l~Gl~----~p~~G~i~~~~g~~~~ 350 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEV--KEGEIFGIVGTSGAGKTTLSKIIAGVL----EPTSGEVNVRVGDEWV 350 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEEecCCccc
Confidence 357999999999952 11235899999999 999999999999999999999999999 7899985431 11
Q ss_pred ----------------e-EeccccCC-------Ccchh-----------------hhhccCCCc-------ccccccchH
Q 005892 81 ----------------I-WMARCAGI-------EPCTL-----------------IMDLEGTDG-------RERGEDDTA 112 (671)
Q Consensus 81 ----------------i-~~~~~~~~-------~~~~~-----------------vld~~g~~~-------~~r~~~~~~ 112 (671)
+ ++...... ++..+ .++..|+.. .......++
T Consensus 351 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSg 430 (520)
T TIGR03269 351 DMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSE 430 (520)
T ss_pred cccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCH
Confidence 0 00000000 01110 112223432 122245578
Q ss_pred HHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcC
Q 005892 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (671)
Q Consensus 113 ~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~ 189 (671)
+|+||++||+|++ ++||+||||++||+.. +..+.++|.++.++.|.|||+||||++++..+|++++++.+
T Consensus 431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~- 503 (520)
T TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPIT------KVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRD- 503 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEEC-
Confidence 8999999999999 9999999999999999 99999999999765689999999999999888999999888
Q ss_pred CeEEEecCccccc
Q 005892 190 QKIWDSVPKPQAH 202 (671)
Q Consensus 190 GkI~~~g~~~e~~ 202 (671)
|+++..|++.+++
T Consensus 504 G~i~~~g~~~~~~ 516 (520)
T TIGR03269 504 GKIVKIGDPEEIV 516 (520)
T ss_pred CEEEEECCHHHHH
Confidence 9999988776543
No 209
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.7e-23 Score=204.15 Aligned_cols=163 Identities=16% Similarity=0.120 Sum_probs=120.2
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccC-
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG- 88 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~- 88 (671)
|+++|+++.|+.. ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++... +........
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i--~~G~~~~l~G~nGsGKstLl~~i~G~~----~~~~G~i~~~-g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTI--KPGEKVAIVGPSGSGKSTLLKLLLRLY----DPTSGEILID-GVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHHcCC----CCCCCEEEEC-CEEhhhcCHH
Confidence 5789999999642 135899999999 999999999999999999999999999 7999964211 111100000
Q ss_pred --CCcchhhhhccCCCcccccc--cchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCC
Q 005892 89 --IEPCTLIMDLEGTDGRERGE--DDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (671)
Q Consensus 89 --~~~~~~vld~~g~~~~~r~~--~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~ 161 (671)
.....++.....+.. .... ..+.+|+||+++|++++ ++||+||||++||+.. +..+.+++.++. +
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~-~ 144 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPET------EALILEALRALA-K 144 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH------HHHHHHHHHHhc-C
Confidence 000011111111111 0111 15778999999999999 9999999999999998 999999999985 3
Q ss_pred CCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 162 RKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 162 ~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
++|+|++|||++.+.. |++++++.+ |+
T Consensus 145 -~~tii~~sh~~~~~~~-~d~~~~l~~-g~ 171 (171)
T cd03228 145 -GKTVIVIAHRLSTIRD-ADRIIVLDD-GR 171 (171)
T ss_pred -CCEEEEEecCHHHHHh-CCEEEEEcC-CC
Confidence 6999999999998876 888887766 63
No 210
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=7.7e-24 Score=213.51 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=123.3
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
+.+ +++|+|++. .+ ++++.+ .+ ++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 2 ~~~-~l~~~~~~~---~~--~vsl~i--~~-e~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 2 LCV-DIEKRLPDF---TL--KIDFDL--NE-EVTGIFGASGAGKSTLLRCIAGLE----KPDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred cee-eeeEecCCe---ee--CceEEE--cc-eeEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEecccccchh
Confidence 344 999999653 33 999999 88 999999999999999999999999 79999742111
Q ss_pred -------ceE-eccccCC-------Ccchh----------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH-
Q 005892 80 -------GIW-MARCAGI-------EPCTL----------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 80 -------gi~-~~~~~~~-------~~~~~----------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~- 125 (671)
.+. +...... ++..+ .++..|+.. .......+.+|+||++||++++
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 010 0100000 00100 011112211 1112234567999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+++|+||||++||+.. ++.+.+++.++.++.|+|+|++|||++.+...|++++++.+ |+++..|
T Consensus 149 ~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRAL------RLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999 99999999999765589999999999988888999998888 9987654
No 211
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.89 E-value=6.5e-24 Score=217.58 Aligned_cols=174 Identities=13% Similarity=0.116 Sum_probs=127.6
Q ss_pred EEEEeeeEEeccc------------------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC
Q 005892 10 TQLIDGDGTFNVS------------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF 71 (671)
Q Consensus 10 I~i~nlsk~y~~~------------------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~ 71 (671)
|++.|++|.|... +...++.++++.+ .+|++++|+|||||||||||++|+|+. +|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i--~~Ge~~~i~G~NGsGKSTLl~~i~Gl~----~p~ 74 (236)
T cd03267 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTI--EKGEIVGFIGPNGAGKTTTLKILSGLL----QPT 74 (236)
T ss_pred CceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----CCC
Confidence 4567777777431 1235899999999 999999999999999999999999998 799
Q ss_pred CCeeeccC------------ceE--eccccCCC-------cchhh------------------hhccCCCc--ccccccc
Q 005892 72 KGRSQTTK------------GIW--MARCAGIE-------PCTLI------------------MDLEGTDG--RERGEDD 110 (671)
Q Consensus 72 sG~~q~~~------------gi~--~~~~~~~~-------~~~~v------------------ld~~g~~~--~~r~~~~ 110 (671)
+|++...+ .+. .+...... +..+. ++..|+.. .......
T Consensus 75 ~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (236)
T cd03267 75 SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQL 154 (236)
T ss_pred ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 99743211 111 11110000 01000 11112211 0111234
Q ss_pred hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh
Q 005892 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~ 187 (671)
+.+|+||+.+|++++ ++||+||||++||+.. +..+.++|.++.++.|.|||+|||+++++...|++++++.
T Consensus 155 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 155 SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA------QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH------HHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 567999999999999 9999999999999999 9999999999976568999999999998888899999988
Q ss_pred cCCeEEEec
Q 005892 188 DIQKIWDSV 196 (671)
Q Consensus 188 ~~GkI~~~g 196 (671)
+ |+++..|
T Consensus 229 ~-G~i~~~g 236 (236)
T cd03267 229 K-GRLLYDG 236 (236)
T ss_pred C-CEEEecC
Confidence 8 9987654
No 212
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.89 E-value=1e-23 Score=213.31 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=125.5
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+.. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i--~~G~~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 3 IEFRNVSFSYPNQ-EIPALDNVSLTI--RAGEKVAIIGRVGSGKSTLLKLLAGLY----KPTSGSVLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEEEEcCCC-CcccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCCeEEECCEEhHHCCHHH
Confidence 7899999999542 235899999999 999999999999999999999999999 78999742111
Q ss_pred ---ce-EeccccCC------Ccchh------------hhhccCCCccc-------------ccccchHHHHHHHHHHHHH
Q 005892 80 ---GI-WMARCAGI------EPCTL------------IMDLEGTDGRE-------------RGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ---gi-~~~~~~~~------~~~~~------------vld~~g~~~~~-------------r~~~~~~~qrQrv~iAlAL 124 (671)
.+ ++...... ++..+ .++..++.... .....+++|+||+.+|+++
T Consensus 76 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 76 LRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred HHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 11 11111000 00000 01111221100 1124578899999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+ ++||+||||++||+.. +..+.+++.++.+ +.|||+||||++.. ..|++++++.+ |+++..
T Consensus 156 ~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~-g~i~~~ 219 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNS------EERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDS-GRIVAD 219 (220)
T ss_pred hcCCCEEEEeCccccCCHHH------HHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeC-CeEeec
Confidence 9 9999999999999999 9999999999864 38999999999876 57888888887 998754
No 213
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-23 Score=220.16 Aligned_cols=180 Identities=12% Similarity=0.122 Sum_probs=134.5
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-----CCCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~q~~~-- 79 (671)
.++|+++|+++.|+. ..++.++++.+ .+|++++|+|+|||||||||++|+|+. + |++|++...+
T Consensus 22 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~I~G~nGsGKSTLl~~i~Gl~----~~~~~~~~~G~i~~~g~~ 92 (271)
T PRK14238 22 KVVFDTQNLNLWYGE---DHALKNINLDI--HENEVTAIIGPSGCGKSTYIKTLNRMV----ELVPSVKTTGKILYRDQN 92 (271)
T ss_pred ceEEEEeeeEEEECC---cceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhc----cCCCCCCCceeEEECCEE
Confidence 347999999999964 36899999999 999999999999999999999999998 5 5888742111
Q ss_pred -------------ceE-eccccC------CCcchhhhhccCCCc-------------------------ccccccchHHH
Q 005892 80 -------------GIW-MARCAG------IEPCTLIMDLEGTDG-------------------------RERGEDDTAFE 114 (671)
Q Consensus 80 -------------gi~-~~~~~~------~~~~~~vld~~g~~~-------------------------~~r~~~~~~~q 114 (671)
.+. +..... .++..+.....+... .......+.+|
T Consensus 93 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 93 IFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQ 172 (271)
T ss_pred cccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHH
Confidence 010 000000 011111000001000 01112345679
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||++||++++ ++||+||||++||+.. +..+.++|.++.+ +.|+|+||||++.+...|++++++.+ |+
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~-G~ 243 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPIS------TLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLN-GY 243 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999999 9999999999854 68999999999998888999988888 99
Q ss_pred EEEecCcccccCC
Q 005892 192 IWDSVPKPQAHME 204 (671)
Q Consensus 192 I~~~g~~~e~~~~ 204 (671)
++..|++.+++.+
T Consensus 244 i~~~g~~~~~~~~ 256 (271)
T PRK14238 244 VNEYDDTDKIFSN 256 (271)
T ss_pred EEEeCCHHHHHcC
Confidence 9999987776543
No 214
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=1.2e-23 Score=219.32 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=135.7
Q ss_pred ceEEEEeeeEEeccc-----------------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC
Q 005892 8 CSTQLIDGDGTFNVS-----------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA 70 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~-----------------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p 70 (671)
..|.+.|+++.|... ....++.++++.+ .+|++++|+|||||||||||++|+|+. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i--~~Ge~~~liG~NGsGKSTLlk~L~Gl~----~p 76 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKA--YEGDVIGLVGINGSGKSTLSNIIGGSL----SP 76 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----CC
Confidence 368999999999531 1234788999999 999999999999999999999999999 79
Q ss_pred CCCeeeccCce-EeccccCC-------Ccchh------------------hhhccCCCcc--cccccchHHHHHHHHHHH
Q 005892 71 FKGRSQTTKGI-WMARCAGI-------EPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 71 ~sG~~q~~~gi-~~~~~~~~-------~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAl 122 (671)
++|++...+.+ .+....+. ++..+ +++..++... ......+.+|+||+++|+
T Consensus 77 ~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Lar 156 (264)
T PRK13546 77 TVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSI 156 (264)
T ss_pred CceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence 99975332211 11101111 11110 0111122111 112335677999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++||||||+++||+.. +..+++++.++.+ .|.|+|++||++..+...|++++++.+ |+|...|+++
T Consensus 157 al~~~p~iLlLDEPt~gLD~~~------~~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 157 NITVNPDILVIDEALSVGDQTF------AQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred HHhhCCCEEEEeCccccCCHHH------HHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 999 9999999999999988 9999999999865 489999999999998888999888887 9999988876
Q ss_pred ccc
Q 005892 200 QAH 202 (671)
Q Consensus 200 e~~ 202 (671)
++.
T Consensus 229 ~~~ 231 (264)
T PRK13546 229 DVL 231 (264)
T ss_pred HHH
Confidence 654
No 215
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.89 E-value=1.3e-23 Score=216.31 Aligned_cols=176 Identities=18% Similarity=0.097 Sum_probs=128.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+.. .+|++|++...+
T Consensus 1 ~i~~~nl~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVED---KAILRGLNLEV--RPGEVHAIMGPNGSGKSTLSATLAGRED--YEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCC---eeeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHcCCcc--CCCCceEEEECCCccccCCHH
Confidence 4899999999964 36899999999 9999999999999999999999999940 048889742110
Q ss_pred -----ceEe-ccccC-CCc---ch---hh-------------------------hhccCCCc---cccc-ccchHHHHHH
Q 005892 80 -----GIWM-ARCAG-IEP---CT---LI-------------------------MDLEGTDG---RERG-EDDTAFEKQS 117 (671)
Q Consensus 80 -----gi~~-~~~~~-~~~---~~---~v-------------------------ld~~g~~~---~~r~-~~~~~~qrQr 117 (671)
++.+ ..... ... .. .+ ++..+++. .... ...+.+|+||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 1111 00000 000 00 00 00011110 0011 1467889999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc-ccchhhhhcCCeEE
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKIW 193 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~-~~~~~ll~~~GkI~ 193 (671)
++||+|++ ++||+||||++||+.. +..+.+++.++.+. |.|||++|||+..+... +++++++.+ |+++
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~~~~d~i~~l~~-g~i~ 225 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDA------LKIVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQ-GRIV 225 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhhhCCEEEEEEC-CeEE
Confidence 99999999 9999999999999998 99999999998754 89999999999888766 677777776 9999
Q ss_pred EecCcc
Q 005892 194 DSVPKP 199 (671)
Q Consensus 194 ~~g~~~ 199 (671)
..|+++
T Consensus 226 ~~g~~~ 231 (248)
T PRK09580 226 KSGDFT 231 (248)
T ss_pred EeCCHH
Confidence 888755
No 216
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=9.2e-24 Score=229.02 Aligned_cols=175 Identities=18% Similarity=0.174 Sum_probs=137.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
++.+++++++|.|++ ..++.+|++.+ .+|+|+||+|.||||||||+++|+|+. +|++|++...+
T Consensus 2 ~~~l~~~~itK~f~~---~~And~V~l~v--~~GeIHaLLGENGAGKSTLm~iL~G~~----~P~~GeI~v~G~~v~~~s 72 (501)
T COG3845 2 EPALEMRGITKRFPG---VVANDDVSLSV--KKGEIHALLGENGAGKSTLMKILFGLY----QPDSGEIRVDGKEVRIKS 72 (501)
T ss_pred CceEEEeccEEEcCC---EEecCceeeee--cCCcEEEEeccCCCCHHHHHHHHhCcc----cCCcceEEECCEEeccCC
Confidence 457999999999964 47899999999 999999999999999999999999999 89999843221
Q ss_pred -------ce--Eeccc------cCCCcchhhhh---------------------ccCC--CcccccccchHHHHHHHHHH
Q 005892 80 -------GI--WMARC------AGIEPCTLIMD---------------------LEGT--DGRERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 -------gi--~~~~~------~~~~~~~~vld---------------------~~g~--~~~~r~~~~~~~qrQrv~iA 121 (671)
|| ..++. +..+|+.+..+ ..|+ ++.....+.+.+++|||-|-
T Consensus 73 P~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 73 PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred HHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence 11 11110 11122222221 1121 12223334455699999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
.+|. ++|||||||+-|-|.. .+.+++.++++.++ |+|||||||-+.++..+||++.++.. |+++....+
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E------~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~-Gkvvgt~~~ 224 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQE------ADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRR-GKVVGTVDP 224 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeC-CeEEeeecC
Confidence 9999 9999999999999988 99999999999876 99999999999999999999999999 999887764
No 217
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.4e-23 Score=221.11 Aligned_cols=179 Identities=13% Similarity=0.136 Sum_probs=133.0
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-----CCCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~q~~~-- 79 (671)
.++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. + |++|++...+
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~----~~~~~~p~~G~I~i~G~~ 107 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDI--PENQVTAMIGPSGCGKSTFLRCINRMN----DLIDAARVEGELTFRGKN 107 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CcccCCCCceEEEECCEE
Confidence 357999999999954 36899999999 999999999999999999999999998 4 5788742110
Q ss_pred -------------ce-EeccccC------CCcchhh-----------------hhccCCCc------ccccccchHHHHH
Q 005892 80 -------------GI-WMARCAG------IEPCTLI-----------------MDLEGTDG------RERGEDDTAFEKQ 116 (671)
Q Consensus 80 -------------gi-~~~~~~~------~~~~~~v-----------------ld~~g~~~------~~r~~~~~~~qrQ 116 (671)
.+ ++..... .++..+. ++..|+.. .......+.+|+|
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred ccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 01 0000000 0111111 11112210 1122345677999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhh-hhcCCeE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL-REDIQKI 192 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~l-l~~~GkI 192 (671)
|++||+|++ ++|||||||++||+.. +..+.++|.++.+ +.|||++|||++.+..+|+++++ +.+ |+|
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~------~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~-G~i 258 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVA------TSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTG-GEL 258 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeC-CEE
Confidence 999999999 9999999999999998 9999999999964 47999999999998888888654 456 999
Q ss_pred EEecCcccccC
Q 005892 193 WDSVPKPQAHM 203 (671)
Q Consensus 193 ~~~g~~~e~~~ 203 (671)
+..|++.+++.
T Consensus 259 ~~~g~~~~~~~ 269 (285)
T PRK14254 259 VEFDDTDKIFE 269 (285)
T ss_pred EEeCCHHHHHh
Confidence 99988766543
No 218
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-23 Score=218.94 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=134.2
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCC-CCCCCCeeeccC------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQTTK------ 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~-m~p~sG~~q~~~------ 79 (671)
.++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+.... ..|++|++...+
T Consensus 8 ~~~l~i~~v~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 8 ETVLRTENLNVYYGS---FLAVKNVWLDI--PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred ceEEEEeeeEEEECC---EEEeecceEEE--cCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 357999999999964 36899999999 999999999999999999999999987100 003678632111
Q ss_pred ---------ceE-eccccC------CCcchhhh-----------------hccCCC------cccccccchHHHHHHHHH
Q 005892 80 ---------GIW-MARCAG------IEPCTLIM-----------------DLEGTD------GRERGEDDTAFEKQSALF 120 (671)
Q Consensus 80 ---------gi~-~~~~~~------~~~~~~vl-----------------d~~g~~------~~~r~~~~~~~qrQrv~i 120 (671)
.+. +..... .++..+.. ...++. ........+++|+||++|
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHH
Confidence 000 000000 00111000 001110 001122356779999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh--------cC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE--------DI 189 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~--------~~ 189 (671)
|+|++ ++||||||+++||+.. +..+.+++.++.+ +.|||++||+++.+...|++++++. +.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~ 234 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPIS------TLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRY 234 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccC
Confidence 99999 9999999999999999 9999999999864 5799999999999998999999887 13
Q ss_pred CeEEEecCcccccCC
Q 005892 190 QKIWDSVPKPQAHME 204 (671)
Q Consensus 190 GkI~~~g~~~e~~~~ 204 (671)
|+|+..|++.+++.+
T Consensus 235 g~i~~~~~~~~~~~~ 249 (264)
T PRK14243 235 GYLVEFDRTEKIFNS 249 (264)
T ss_pred ceEEEeCCHHHHHhC
Confidence 999999988877643
No 219
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=3.3e-24 Score=217.09 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=138.4
Q ss_pred cceEEEEeeeEEeccc------------------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCC
Q 005892 7 CCSTQLIDGDGTFNVS------------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREM 68 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~------------------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m 68 (671)
|.+|.++|++|.|... ....+..+++|.+ ++|++++++|||||||||+||+|.|++
T Consensus 1 ~~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~I--P~G~ivgflGaNGAGKSTtLKmLTGll---- 74 (325)
T COG4586 1 MAMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEI--PKGEIVGFLGANGAGKSTTLKMLTGLL---- 74 (325)
T ss_pred CceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeec--CCCcEEEEEcCCCCcchhhHHHHhCcc----
Confidence 3478899999998421 1234788999999 999999999999999999999999999
Q ss_pred CCCCCeeeccCceEeccc--------------c-------CC---------------------CcchhhhhccCCCcccc
Q 005892 69 DAFKGRSQTTKGIWMARC--------------A-------GI---------------------EPCTLIMDLEGTDGRER 106 (671)
Q Consensus 69 ~p~sG~~q~~~gi~~~~~--------------~-------~~---------------------~~~~~vld~~g~~~~~r 106 (671)
.|++|.+...+-..+... . .. +...-++|+.+.-. .+
T Consensus 75 ~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk-~~ 153 (325)
T COG4586 75 LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK-WP 153 (325)
T ss_pred ccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhh-hh
Confidence 799997432211111100 0 00 01111222222211 11
Q ss_pred cccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccch
Q 005892 107 GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (671)
Q Consensus 107 ~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~ 183 (671)
....+.+||.|+-+|.||. ++|+|||||-|||... +..+.+.+++.++++++||+++||+++.+..+|+++
T Consensus 154 vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~a------q~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv 227 (325)
T COG4586 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA------QANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV 227 (325)
T ss_pred hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhH------HHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhhe
Confidence 2234667999999999999 9999999999999998 999999999999999999999999999888889888
Q ss_pred hhhhcCCeEEEecCccccc
Q 005892 184 VLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 184 ~ll~~~GkI~~~g~~~e~~ 202 (671)
++++. |+++.+|+-.++.
T Consensus 228 ~~I~~-Gqlv~dg~l~~l~ 245 (325)
T COG4586 228 LLIDQ-GQLVFDGTLAQLQ 245 (325)
T ss_pred EEeeC-CcEeecccHHHHH
Confidence 88877 9999999876654
No 220
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=9.6e-24 Score=207.25 Aligned_cols=141 Identities=19% Similarity=0.073 Sum_probs=113.8
Q ss_pred EeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcc
Q 005892 13 IDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPC 92 (671)
Q Consensus 13 ~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~ 92 (671)
.|+++.|++. .++.++ +.+ .+|++++|+||||||||||+|+|+|+. +|++|++ .+.+.. .
T Consensus 4 ~~l~~~~~~~---~~l~~~-~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i------~~~g~~----i 63 (177)
T cd03222 4 PDCVKRYGVF---FLLVEL-GVV--KEGEVIGIVGPNGTGKTTAVKILAGQL----IPNGDND------EWDGIT----P 63 (177)
T ss_pred CCeEEEECCE---EEEccC-cEE--CCCCEEEEECCCCChHHHHHHHHHcCC----CCCCcEE------EECCEE----E
Confidence 4789999653 456664 788 899999999999999999999999999 8999964 332210 0
Q ss_pred hhhhhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEE
Q 005892 93 TLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFV 169 (671)
Q Consensus 93 ~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~V 169 (671)
.++.+.. ..+.+|+||+++|++++ +++++||||++||+.. +..+.+.+.++.++.+.|+|+|
T Consensus 64 ~~~~q~~---------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~------~~~l~~~l~~~~~~~~~tiiiv 128 (177)
T cd03222 64 VYKPQYI---------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ------RLNAARAIRRLSEEGKKTALVV 128 (177)
T ss_pred EEEcccC---------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHcCCCEEEEE
Confidence 0000100 16889999999999999 9999999999999998 9999999999876534899999
Q ss_pred ecCCCcccccccchhhhhc
Q 005892 170 IRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 170 tHDl~~~~~~~~~~~ll~~ 188 (671)
|||++.+...|++++++.+
T Consensus 129 sH~~~~~~~~~d~i~~l~~ 147 (177)
T cd03222 129 EHDLAVLDYLSDRIHVFEG 147 (177)
T ss_pred ECCHHHHHHhCCEEEEEcC
Confidence 9999988888898888877
No 221
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.2e-23 Score=215.52 Aligned_cols=176 Identities=17% Similarity=0.135 Sum_probs=133.3
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|.+.|+++.|++ .++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i--~~Ge~~~i~G~nG~GKStLl~~l~G~~----~p~~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEV--ERGDYFVILGPTGSGKSVLLETIAGFI----KPDSGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCEEcCcCChhH
Confidence 468999999954 2799999999 999999999999999999999999999 89999742111
Q ss_pred -ceE--eccccCC------Ccchh------------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH---HH
Q 005892 80 -GIW--MARCAGI------EPCTL------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (671)
Q Consensus 80 -gi~--~~~~~~~------~~~~~------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---ev 127 (671)
.+. .+..... ++..+ .++..|+.. .......+.+|+||++||+|++ ++
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 111 1100000 01111 011112211 1111234667999999999999 99
Q ss_pred HhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 128 LlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
+++||||++||+.+ +..+.++++++..+.|.|+|++||++.++...|++++++.+ |+++..|++.+..
T Consensus 151 lllDEPt~gLD~~~------~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 218 (235)
T cd03299 151 LLLDEPFSALDVRT------KEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLN-GKLIQVGKPEEVF 218 (235)
T ss_pred EEECCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEecCHHHHH
Confidence 99999999999999 99999999998765589999999999998888999999988 9999998876554
No 222
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.6e-23 Score=224.86 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=138.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCC-CCCCCCeeecc--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQTT-------- 78 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~-m~p~sG~~q~~-------- 78 (671)
.+|+++|+++.|... ...++.++++.+ .+|+++||+|||||||||||++|+|+.... ..|++|++...
T Consensus 79 ~~i~~~nls~~y~~~-~~~~L~~is~~I--~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMNR-TKHVLHDLNLDI--KRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecCC-CceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 379999999999642 346899999999 999999999999999999999999997100 01467863210
Q ss_pred -------CceEe-cccc------CCCcchhh-------------------hhccCCC------cccccccchHHHHHHHH
Q 005892 79 -------KGIWM-ARCA------GIEPCTLI-------------------MDLEGTD------GRERGEDDTAFEKQSAL 119 (671)
Q Consensus 79 -------~gi~~-~~~~------~~~~~~~v-------------------ld~~g~~------~~~r~~~~~~~qrQrv~ 119 (671)
.++.+ .... ..+++.+. ++..++. ..+.+...+++|+||++
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 01111 0000 01111111 1111111 01223345678999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
||+|++ ++|||||||++||+.. ...+.+.|.++.+ +.|+|+|||+++.+...|++++++.+ |+|++.|
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~------~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~-G~i~e~g 306 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIA------TAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQ-GWIEEAG 306 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999998 8889999998864 68999999999999888999999988 9999999
Q ss_pred CcccccCCcc
Q 005892 197 PKPQAHMETP 206 (671)
Q Consensus 197 ~~~e~~~~~~ 206 (671)
++.+++.++.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999876543
No 223
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.7e-23 Score=216.04 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=132.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC-----CCeeeccC----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQTTK---- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~-----sG~~q~~~---- 79 (671)
+|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+|+|+|+. +|. +|++...+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDV--QRGTVNALIGPSGCGKTTFLRAINRMH----DLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CCCcCCCCceeEEECCEEcc
Confidence 6999999999964 36899999999 999999999999999999999999998 453 67632110
Q ss_pred -----------ceE-eccccC-------CCcchhhhhccCCCc-------------------------ccccccchHHHH
Q 005892 80 -----------GIW-MARCAG-------IEPCTLIMDLEGTDG-------------------------RERGEDDTAFEK 115 (671)
Q Consensus 80 -----------gi~-~~~~~~-------~~~~~~vld~~g~~~-------------------------~~r~~~~~~~qr 115 (671)
++. +..... .++..+.....+... .......+.+|+
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred cCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHH
Confidence 110 000000 011111111001000 011123456799
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
||+++|++++ ++||+|||+++||+.. +..+.+++.++. + ++|+|++||+++.+...|++++++.+ |++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i 225 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPAS------TARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLV-GDL 225 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 999999999985 3 69999999999998888999999988 999
Q ss_pred EEecCcccccC
Q 005892 193 WDSVPKPQAHM 203 (671)
Q Consensus 193 ~~~g~~~e~~~ 203 (671)
+..|++++++.
T Consensus 226 ~~~~~~~~~~~ 236 (252)
T PRK14272 226 VEHGPTDQLFT 236 (252)
T ss_pred EEeCCHHHHHh
Confidence 99998877654
No 224
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=1.1e-23 Score=200.11 Aligned_cols=173 Identities=23% Similarity=0.256 Sum_probs=133.7
Q ss_pred eEEEEeeeEEeccc-cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~-~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
.|+++++++..+.. +--.++++|++.+ .+||.++|+||+||||||||-+++|+. +|++|++...+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v--~~Ge~vaiVG~SGSGKSTLl~vlAGLd----~~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVV--KRGETVAIVGPSGSGKSTLLAVLAGLD----DPSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEe--cCCceEEEEcCCCCcHHhHHHHHhcCC----CCCCceEEEcCcchhhcCH
Confidence 79999999999643 2457999999999 999999999999999999999999999 89999842111
Q ss_pred -----------ceEecc------ccCCCcchhhhhccC------------------CCccc--ccccchHHHHHHHHHHH
Q 005892 80 -----------GIWMAR------CAGIEPCTLIMDLEG------------------TDGRE--RGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 -----------gi~~~~------~~~~~~~~~vld~~g------------------~~~~~--r~~~~~~~qrQrv~iAl 122 (671)
|+.++. ....+|..+.+...| +..+. .....+++|+|||+||+
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHH
Confidence 122111 111233333333333 22111 11234566999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
|++ ++|+.||||.+||... -..|.+++-.+++++|+|+|+||||...+.+ |++.+-+.. |+||.+
T Consensus 160 Afa~~P~vLfADEPTGNLD~~T------g~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~-G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRAT------GDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRS-GRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhH------HHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeec-ceeccC
Confidence 999 9999999999999998 8999999999999999999999999998875 888877777 999864
No 225
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-23 Score=218.32 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=134.3
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-----CCCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~q~~~-- 79 (671)
.++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. + |++|++...+
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i--~~Ge~~~I~G~nGsGKSTLl~~laGl~----~~~~~~~~~G~i~i~g~~ 93 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRI--PKNRVTAFIGPSGCGKSTLLRCFNRMN----DLVDNCRIEGEIRLDGQN 93 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEE--cCCCEEEEECCCCCCHHHHHHHHHhcC----CCccCCCCceEEEECCEE
Confidence 457999999999954 36899999999 999999999999999999999999997 4 3788742110
Q ss_pred -------------ceE-eccccC------CCcchhhh-------------------hccCCCc------ccccccchHHH
Q 005892 80 -------------GIW-MARCAG------IEPCTLIM-------------------DLEGTDG------RERGEDDTAFE 114 (671)
Q Consensus 80 -------------gi~-~~~~~~------~~~~~~vl-------------------d~~g~~~------~~r~~~~~~~q 114 (671)
.+. +..... .++..+.. +..++.. .......+.+|
T Consensus 94 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 94 IYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ 173 (272)
T ss_pred CcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence 010 000000 01111110 1112210 01123346679
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+||+++|+|++ ++||+||||++||+.. +..+.+++.++.+ +.|+|++||+++.+...|++++++.+ |+
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~-G~ 244 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPIS------TLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYM-GK 244 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999963 68999999999998888999999888 99
Q ss_pred EEEecCcccccC
Q 005892 192 IWDSVPKPQAHM 203 (671)
Q Consensus 192 I~~~g~~~e~~~ 203 (671)
|+..|++.++..
T Consensus 245 i~~~g~~~~~~~ 256 (272)
T PRK14236 245 LVEYGDTDTLFT 256 (272)
T ss_pred EEecCCHHHHhc
Confidence 999998776654
No 226
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2e-23 Score=236.33 Aligned_cols=174 Identities=16% Similarity=0.129 Sum_probs=133.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDC--RAGQVHALMGENGAGKSTLLKILSGNY----QPDAGSILIDGQEMRFAST 73 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEE--eCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCEECCCCCH
Confidence 57999999999964 36899999999 999999999999999999999999999 79999743211
Q ss_pred ------ceE-eccccCC-------Ccchh---------------------hhhccCCCc--ccccccchHHHHHHHHHHH
Q 005892 80 ------GIW-MARCAGI-------EPCTL---------------------IMDLEGTDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ------gi~-~~~~~~~-------~~~~~---------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
++- +...... ++..+ .++..|+.. .......+++|+||++||+
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHH
Confidence 111 1100000 01100 011112221 1122345678999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+++ ++|||||||++||+.. +..+.++|.++.++ |.|||+||||++++...|++++++.+ |+|+..+++
T Consensus 154 al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~~-G~i~~~~~~ 224 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSARE------IEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKD-GRYVATFDD 224 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEeecCc
Confidence 999 9999999999999999 99999999999754 99999999999998888999999988 999876643
No 227
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.6e-23 Score=212.51 Aligned_cols=174 Identities=18% Similarity=0.156 Sum_probs=129.7
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|++. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTI--PAGKKVAIVGPSGSGKSTILRLLFRFY----DVSSGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----CCCCCEEEECCEEhhhCCHHH
Confidence 4789999999532 35899999999 999999999999999999999999999 79999743211
Q ss_pred ---ceEe-ccccCCCcchhhhhc-------------------cCCCc-------------ccccccchHHHHHHHHHHHH
Q 005892 80 ---GIWM-ARCAGIEPCTLIMDL-------------------EGTDG-------------RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ---gi~~-~~~~~~~~~~~vld~-------------------~g~~~-------------~~r~~~~~~~qrQrv~iAlA 123 (671)
.+.+ .......+ ..+.+. .++.. .......+.+|+||+++|+|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~a 151 (236)
T cd03253 73 LRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARA 151 (236)
T ss_pred HHhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 0111 00000000 001110 01100 00122456789999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++||+||||++||+.. +..+.++|.++.+ |.|||++||+++.+.. |++++++.+ |++...|++.+
T Consensus 152 L~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiii~sh~~~~~~~-~d~~~~l~~-g~i~~~~~~~~ 221 (236)
T cd03253 152 ILKNPPILLLDEATSALDTHT------EREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKD-GRIVERGTHEE 221 (236)
T ss_pred HhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhcC--CCEEEEEcCCHHHHHh-CCEEEEEEC-CEEEeeCCHHH
Confidence 99 9999999999999998 9999999999853 8999999999988864 888888887 99998887655
Q ss_pred cc
Q 005892 201 AH 202 (671)
Q Consensus 201 ~~ 202 (671)
+.
T Consensus 222 ~~ 223 (236)
T cd03253 222 LL 223 (236)
T ss_pred Hh
Confidence 43
No 228
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.4e-23 Score=218.17 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=134.5
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC---
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK--- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~--- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i--~~Ge~~~IiG~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKI--PAKKIIAFIGPSGCGKSTLLRCFNRMN----DLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEE--cCCCEEEEECCCCCCHHHHHHHHhccc----ccccCCCcCceEEECCEec
Confidence 48999999999964 36899999999 999999999999999999999999997 32 578632110
Q ss_pred ------------ceE-eccccC------CCcchhh-----------------hhccCCC----c--ccccccchHHHHHH
Q 005892 80 ------------GIW-MARCAG------IEPCTLI-----------------MDLEGTD----G--RERGEDDTAFEKQS 117 (671)
Q Consensus 80 ------------gi~-~~~~~~------~~~~~~v-----------------ld~~g~~----~--~~r~~~~~~~qrQr 117 (671)
++. +..... .++..+. +...++. . .......+.+|+||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH
Confidence 110 110000 0111110 0111110 0 01123356779999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh-------
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE------- 187 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~------- 187 (671)
+++|+|++ ++|||||||++||+.. +..+.++|.++.+ +.|||++|||++.+...|++++++.
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPIS------TRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEeccccccc
Confidence 99999999 9999999999999999 9999999999863 6899999999999998999999997
Q ss_pred -cCCeEEEecCcccccCC
Q 005892 188 -DIQKIWDSVPKPQAHME 204 (671)
Q Consensus 188 -~~GkI~~~g~~~e~~~~ 204 (671)
+.|+++..|++.+++.+
T Consensus 242 ~~~G~~~~~g~~~~~~~~ 259 (274)
T PRK14265 242 KRRGKLVEFSPTEQMFGS 259 (274)
T ss_pred ccCceEEEeCCHHHHHhC
Confidence 24999999998887644
No 229
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.7e-23 Score=220.69 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=133.5
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC--CCCCeeeccC-----
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--AFKGRSQTTK----- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~--p~sG~~q~~~----- 79 (671)
.++|+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+... .+ |++|++...+
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~-~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADI--LSKYVTAIIGPSGCGKSTFLRAINRMNDL-IPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCCceEEEECCEEhhh
Confidence 457999999999954 35899999999 99999999999999999999999998510 01 4788742111
Q ss_pred ----------ceE-eccccCC------Ccchhhh-------------------hccCCC----c--ccccccchHHHHHH
Q 005892 80 ----------GIW-MARCAGI------EPCTLIM-------------------DLEGTD----G--RERGEDDTAFEKQS 117 (671)
Q Consensus 80 ----------gi~-~~~~~~~------~~~~~vl-------------------d~~g~~----~--~~r~~~~~~~qrQr 117 (671)
++. +...... +++.+.. +..|+. . .......+++|+||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 190 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQR 190 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHH
Confidence 010 0000000 0011100 011111 0 01123345779999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
++||+|++ ++|||||||++||+.. +..+.+++.++.. +.|||+||||++.+...|++++++.+ |+++.
T Consensus 191 v~LAraL~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~-G~i~~ 261 (286)
T PRK14275 191 LCVARTLAVEPEILLLDEPTSALDPKA------TAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYE-GVLVE 261 (286)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 9999999999853 58999999999998888999999888 99999
Q ss_pred ecCcccccC
Q 005892 195 SVPKPQAHM 203 (671)
Q Consensus 195 ~g~~~e~~~ 203 (671)
.|++.+++.
T Consensus 262 ~g~~~~~~~ 270 (286)
T PRK14275 262 HAPTAQLFT 270 (286)
T ss_pred eCCHHHHHh
Confidence 998776653
No 230
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=1.2e-23 Score=211.44 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=144.9
Q ss_pred cceEEEEeeeEEeccc---------------------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccC
Q 005892 7 CCSTQLIDGDGTFNVS---------------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~---------------------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
|++|++.|+++.|.-. ....+|++|+|.+ .+|+.+||+|+||||||||||+|+|..
T Consensus 1 ~~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i--~~Ge~vGiiG~NGaGKSTLlkliaGi~- 77 (249)
T COG1134 1 MVVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEI--YKGERVGIIGHNGAGKSTLLKLIAGIY- 77 (249)
T ss_pred CcEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEE--eCCCEEEEECCCCCcHHHHHHHHhCcc-
Confidence 3579999999988421 1235899999999 999999999999999999999999999
Q ss_pred CCCCCCCCeeeccCceEe---------ccccCCCcchhhhhccCCCccccc--------------------ccchHHHHH
Q 005892 66 REMDAFKGRSQTTKGIWM---------ARCAGIEPCTLIMDLEGTDGRERG--------------------EDDTAFEKQ 116 (671)
Q Consensus 66 ~~m~p~sG~~q~~~gi~~---------~~~~~~~~~~~vld~~g~~~~~r~--------------------~~~~~~qrQ 116 (671)
+|++|++..++.+.. +..++.+|..+..-..|+...+.. ...+.+|+-
T Consensus 78 ---~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~a 154 (249)
T COG1134 78 ---KPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYA 154 (249)
T ss_pred ---CCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHH
Confidence 899998765554431 112334555555555555543221 112344999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|++|+.|+. |+||+||+.+-.|+.- ++.-.+.+.++.++ +.|+|+||||++.+..+|++.+++.+ |+|.
T Consensus 155 RLaFsia~~~~pdILllDEvlavGD~~F------~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i~l~~-G~i~ 226 (249)
T COG1134 155 RLAFSVATHVEPDILLLDEVLAVGDAAF------QEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLEH-GQIR 226 (249)
T ss_pred HHHHhhhhhcCCCEEEEehhhhcCCHHH------HHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhcCeeEEEeC-CEEE
Confidence 999999999 9999999999999877 88888888888665 79999999999999999999999999 9999
Q ss_pred EecCccccc
Q 005892 194 DSVPKPQAH 202 (671)
Q Consensus 194 ~~g~~~e~~ 202 (671)
..|+++++.
T Consensus 227 ~~G~~~~vi 235 (249)
T COG1134 227 MEGSPEEVI 235 (249)
T ss_pred EcCCHHHHH
Confidence 999998765
No 231
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=2.2e-23 Score=211.01 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=127.5
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|++++|+.. -..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 3 IEFKNVSLRYRPN-LPPVLKNISFSI--KPGEKVGIVGRTGSGKSSLLLALFRLV----ELSSGSILIDGVDISKIGLHD 75 (221)
T ss_pred EEEEEEEEecCCC-CcccccceEEEE--CCCCEEEEECCCCCCHHHHHHHHHcCC----CCCCCEEEECCEEhHhCCHHH
Confidence 7899999999642 236999999999 999999999999999999999999998 89999742111
Q ss_pred ---ceEe-ccccC------CCcch-----------hhhhccCCCcc-------------cccccchHHHHHHHHHHHHHH
Q 005892 80 ---GIWM-ARCAG------IEPCT-----------LIMDLEGTDGR-------------ERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ---gi~~-~~~~~------~~~~~-----------~vld~~g~~~~-------------~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+.+ ..... .++.. ..++..++... ......+.+|+||+++|++++
T Consensus 76 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~ 155 (221)
T cd03244 76 LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL 155 (221)
T ss_pred HhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 0110 00000 00000 00011111110 122345677999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
+++|+|||+++||+.. +..+.+++.++.+ +.|||++||+++.+.. |++++++.+ |+++..|+
T Consensus 156 ~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~-g~~~~~~~ 220 (221)
T cd03244 156 RKSKILVLDEATASVDPET------DALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDK-GRVVEFDS 220 (221)
T ss_pred cCCCEEEEeCccccCCHHH------HHHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEEC-CeEEecCC
Confidence 9999999999999998 9999999999853 6899999999988874 888888887 99988765
No 232
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.5e-23 Score=237.56 Aligned_cols=180 Identities=12% Similarity=0.113 Sum_probs=135.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-CCCCeeeccC-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-p~sG~~q~~~------- 79 (671)
++|+++|+++.|+..+-..++.+++|.+ .+|++++|+||||||||||+|+|+|+. + |++|++...+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i--~~Ge~~~l~G~NGsGKSTLlk~i~Gl~----~~~~~G~i~~~g~~~~~~~ 331 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSL--RRGEILGIAGLVGAGRTELVQCLFGAY----PGRWEGEIFIDGKPVKIRN 331 (506)
T ss_pred ceEEEecCccccccccccccccceeeEE--cCCcEEEEeCCCCCCHHHHHHHHhCCC----CCCCCcEEEECCEECCCCC
Confidence 4799999999994211235899999999 999999999999999999999999998 6 4888743110
Q ss_pred ---------ceEeccc--cCC-------Ccchh-----------------------hhhccCCCc---ccccccchHHHH
Q 005892 80 ---------GIWMARC--AGI-------EPCTL-----------------------IMDLEGTDG---RERGEDDTAFEK 115 (671)
Q Consensus 80 ---------gi~~~~~--~~~-------~~~~~-----------------------vld~~g~~~---~~r~~~~~~~qr 115 (671)
+...+.. ... ++..+ .++..++.. .......+++|+
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 332 PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQ 411 (506)
T ss_pred HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHH
Confidence 0111110 000 00100 011122211 112234567899
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
|||+||+|++ ++|||||||++||+.. +..+++++.++.++ |+|||+||||++++..+|++++++.+ |+|
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~-G~i 483 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGA------KYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHE-GKL 483 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhH------HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999999765 99999999999999889999998888 999
Q ss_pred EEecCcccc
Q 005892 193 WDSVPKPQA 201 (671)
Q Consensus 193 ~~~g~~~e~ 201 (671)
+..|+++++
T Consensus 484 ~~~~~~~~~ 492 (506)
T PRK13549 484 KGDLINHNL 492 (506)
T ss_pred EEEeccccC
Confidence 999887654
No 233
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-23 Score=215.00 Aligned_cols=181 Identities=13% Similarity=0.090 Sum_probs=133.5
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC---CCCeeeccC-----
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA---FKGRSQTTK----- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p---~sG~~q~~~----- 79 (671)
+||+++|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+... .| ++|++...+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 4 KIITSSDVHLFYGK---FEALKGIDLDF--NQNEITALIGPSGCGKSTYLRTLNRMNDL--IPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred ceEEEEeEEEEECC---eeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhccccc--CCCCCcccEEEEcCEEccc
Confidence 47999999999964 36899999999 99999999999999999999999998610 13 478632110
Q ss_pred ----------ceEe-ccccC------CCcchhhhh-------------------ccCCC------cccccccchHHHHHH
Q 005892 80 ----------GIWM-ARCAG------IEPCTLIMD-------------------LEGTD------GRERGEDDTAFEKQS 117 (671)
Q Consensus 80 ----------gi~~-~~~~~------~~~~~~vld-------------------~~g~~------~~~r~~~~~~~qrQr 117 (671)
.+.+ ..... .++..+... ..++. ........+.+|+||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 0110 00000 011111110 01110 001123346779999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
++||++++ ++||+||||++||+.+ +..+.++|.++.+ +.|+|+|||+++.+...|++++++.+ |+++.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~-G~i~~ 227 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPIS------STQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLT-GNLIE 227 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEEC-CEEEE
Confidence 99999999 9999999999999999 9999999999854 58999999999998888999988888 99999
Q ss_pred ecCcccccCC
Q 005892 195 SVPKPQAHME 204 (671)
Q Consensus 195 ~g~~~e~~~~ 204 (671)
.|++.+.+.+
T Consensus 228 ~~~~~~~~~~ 237 (252)
T PRK14255 228 FADTKQMFLN 237 (252)
T ss_pred eCCHHHHhcC
Confidence 9988776644
No 234
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=4.9e-23 Score=206.60 Aligned_cols=172 Identities=13% Similarity=0.104 Sum_probs=128.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|+++.|+.. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 6 ~l~~~~l~~~~~~~-~~~~l~~isl~i--~~G~~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 6 EIEVENLSVRYAPD-LPPVLKNVSFKV--KAGEKIGIVGRTGAGKSTLILALFRFL----EAEEGKIEIDGIDISTIPLE 78 (207)
T ss_pred eEEEEEEEEEeCCC-CcccccCceEEE--CCCCEEEEECCCCCCHHHHHHHHhccc----CCCCCeEEECCEEhHHCCHH
Confidence 59999999999642 236899999999 999999999999999999999999998 79999742111
Q ss_pred ----ceEe-ccccCCCcchhhhhccCC----C---------cccccccchHHHHHHHHHHHHHH---HHHhccccccCCC
Q 005892 80 ----GIWM-ARCAGIEPCTLIMDLEGT----D---------GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIG 138 (671)
Q Consensus 80 ----gi~~-~~~~~~~~~~~vld~~g~----~---------~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD 138 (671)
.+.+ .......+. .+.+.... . ........+.+|+||+++|++++ +++|+|||+++||
T Consensus 79 ~~~~~i~~v~q~~~~~~~-tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 157 (207)
T cd03369 79 DLRSSLTIIPQDPTLFSG-TIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASID 157 (207)
T ss_pred HHHhhEEEEecCCcccCc-cHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 1111 000001110 11111100 0 01122345677999999999999 9999999999999
Q ss_pred hhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 139 REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 139 ~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+.. +..+.++|.++. + |.|+|++||+++.+.. |++++++.+ |++...|++
T Consensus 158 ~~~------~~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l~~-g~i~~~g~~ 207 (207)
T cd03369 158 YAT------DALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVMDA-GEVKEYDHP 207 (207)
T ss_pred HHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEEC-CEEEecCCC
Confidence 998 999999999984 4 8999999999988865 888888887 999887753
No 235
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-23 Score=215.76 Aligned_cols=181 Identities=14% Similarity=0.078 Sum_probs=132.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC---CCCeeeccC----
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA---FKGRSQTTK---- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p---~sG~~q~~~---- 79 (671)
+++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+... .| ++|++...+
T Consensus 4 ~~~i~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~~~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 4 EIILSTKNLNLWYGE---KHALYDITISI--PKNRVTALIGPSGCGKSTLLRCFNRMNDL--IPGCRITGDILYNGENIM 76 (253)
T ss_pred cceEEEeeeEEEECC---eeeeeeeEEEE--CCCcEEEEECCCCCCHHHHHHHHhccccC--CCCCCcceEEEECCEEcc
Confidence 457999999999964 36899999999 99999999999999999999999998610 12 478632110
Q ss_pred -----------ceEe-ccccCC------Ccchhhhhc-------------------cCCCc------ccccccchHHHHH
Q 005892 80 -----------GIWM-ARCAGI------EPCTLIMDL-------------------EGTDG------RERGEDDTAFEKQ 116 (671)
Q Consensus 80 -----------gi~~-~~~~~~------~~~~~vld~-------------------~g~~~------~~r~~~~~~~qrQ 116 (671)
++.+ ...... ++..+.... .++.. .......+.+|+|
T Consensus 77 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred ccccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 0110 000000 001010000 01100 0111234567999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|+++|++++ +++|+|||+++||+.. +..+.+++.++.+ +.|+|++||+++.+...|++++++.+ |+++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~------~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~-G~i~ 227 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIA------TAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYL-GKLI 227 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999998 9999999999864 58999999999998888999988888 9999
Q ss_pred EecCcccccC
Q 005892 194 DSVPKPQAHM 203 (671)
Q Consensus 194 ~~g~~~e~~~ 203 (671)
..|++.+++.
T Consensus 228 ~~g~~~~~~~ 237 (253)
T PRK14261 228 EFDKTTQIFE 237 (253)
T ss_pred EcCCHHHHHh
Confidence 9998776643
No 236
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.2e-23 Score=215.31 Aligned_cols=177 Identities=13% Similarity=0.170 Sum_probs=132.2
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-----CCCCeeeccC-----
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK----- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~q~~~----- 79 (671)
-+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. . |++|++...+
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~I~G~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDI--YKREVTAFIGPSGCGKSTFLRCFNRMN----DFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhc----ccCCCCCcceEEEECCEehHh
Confidence 468999999954 36899999999 999999999999999999999999997 4 4688642110
Q ss_pred ----------ce-EeccccC------CCcchhh--------------------hhccCCCc------ccccccchHHHHH
Q 005892 80 ----------GI-WMARCAG------IEPCTLI--------------------MDLEGTDG------RERGEDDTAFEKQ 116 (671)
Q Consensus 80 ----------gi-~~~~~~~------~~~~~~v--------------------ld~~g~~~------~~r~~~~~~~qrQ 116 (671)
++ ++..... .++..+. ++..|+.. .......+.+|+|
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQ 156 (251)
T ss_pred cccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHH
Confidence 01 1111000 0111110 11122211 0112334677999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|+++|++++ ++||+||||++||+.. +..+.++|.++. + |.|||+||||++.+...|++++++.+ |+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~-G~i~ 227 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVA------TNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQS-GRIV 227 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEEC-CEEE
Confidence 999999999 9999999999999998 999999999984 3 89999999999998888999999988 9999
Q ss_pred EecCcccccCC
Q 005892 194 DSVPKPQAHME 204 (671)
Q Consensus 194 ~~g~~~e~~~~ 204 (671)
..|++.+++..
T Consensus 228 ~~~~~~~~~~~ 238 (251)
T PRK14244 228 EYNTTQEIFKN 238 (251)
T ss_pred EeCCHHHHhcC
Confidence 99887766543
No 237
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=3.6e-23 Score=208.94 Aligned_cols=164 Identities=14% Similarity=0.087 Sum_probs=122.4
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
.++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 9 ~~~l~~~~l~~~~~~---~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 9 PPLLAAHALAFSRNE---EPVFGPLDFHV--DAGEALLVQGDNGAGKTTLLRVLAGLL----HVESGQIQIDGKTATRGD 79 (214)
T ss_pred cceEEEeeEEEecCC---ceeeecceEEE--CCCCEEEEEcCCCCCHHHHHHHHhCCC----CCCCeeEEECCEEccchh
Confidence 357999999999964 36899999999 999999999999999999999999999 89999742211
Q ss_pred ---ce-EeccccCC-------Ccchhh---------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---HHH
Q 005892 80 ---GI-WMARCAGI-------EPCTLI---------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIV 128 (671)
Q Consensus 80 ---gi-~~~~~~~~-------~~~~~v---------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evL 128 (671)
.+ ++...... ++..+. +...++.. .......+.+|+||+++|++++ ++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLW 159 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 01 11111110 011000 01112111 1111234567999999999999 999
Q ss_pred hccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhh
Q 005892 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (671)
Q Consensus 129 lLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll 186 (671)
|+||||++||+.. ++.+.+++.++.++ |.|+|++|||++++...|++++++
T Consensus 160 llDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l 210 (214)
T PRK13543 160 LLDEPYANLDLEG------ITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTL 210 (214)
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEE
Confidence 9999999999999 99999999998765 899999999999998888876654
No 238
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.89 E-value=3.4e-23 Score=234.37 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=134.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC--CCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p--~sG~~q~~~------- 79 (671)
+|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 1 ~l~i~~l~~~~~~---~~il~~isl~i--~~Ge~~~liG~nGsGKSTLl~~i~G~~----~~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 1 LLEMKGIVKTFGG---VKALDGIDLEV--RPGECVGLCGENGAGKSTLMKILSGVY----PHGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred CEEEEeEEEEeCC---eEeecceEEEE--eCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCCCeEEEECCEECCCCC
Confidence 4899999999964 36899999999 999999999999999999999999998 55 688742111
Q ss_pred -------ce--Eecccc------CCCcch----------------------hhhhccCCCcc---cccccchHHHHHHHH
Q 005892 80 -------GI--WMARCA------GIEPCT----------------------LIMDLEGTDGR---ERGEDDTAFEKQSAL 119 (671)
Q Consensus 80 -------gi--~~~~~~------~~~~~~----------------------~vld~~g~~~~---~r~~~~~~~qrQrv~ 119 (671)
++ ..+... ..++.. .+++..|+... ......+++|+||++
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 72 IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred HHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence 11 111100 000000 01122233221 113456788999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
||+|++ ++|||||||++||+.. +..+.++|.++.++ |.|||+||||++.+...|++++++.+ |+++..+
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~~-G~i~~~~ 223 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKE------TEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRD-GQHVATK 223 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEeC-CeEeeec
Confidence 999999 9999999999999999 99999999999754 99999999999999888999999988 9999888
Q ss_pred Ccccc
Q 005892 197 PKPQA 201 (671)
Q Consensus 197 ~~~e~ 201 (671)
++++.
T Consensus 224 ~~~~~ 228 (500)
T TIGR02633 224 DMSTM 228 (500)
T ss_pred CcccC
Confidence 76653
No 239
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=213.85 Aligned_cols=183 Identities=14% Similarity=0.143 Sum_probs=133.2
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCC-CCCCCCCeeeccC------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQTTK------ 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~-~m~p~sG~~q~~~------ 79 (671)
|++|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+... ...|++|++...+
T Consensus 1 ~~~l~~~~v~~~~~~---~~~l~~~s~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 1 MYRIEVENLNTYFDD---AHILKNVNLDI--PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred CcEEEEEeEEEEeCC---eEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 457999999999964 36899999999 99999999999999999999999998610 0013778642111
Q ss_pred ---------ceE-eccccC------CCcchhhh-------------------hccCCCc------ccccccchHHHHHHH
Q 005892 80 ---------GIW-MARCAG------IEPCTLIM-------------------DLEGTDG------RERGEDDTAFEKQSA 118 (671)
Q Consensus 80 ---------gi~-~~~~~~------~~~~~~vl-------------------d~~g~~~------~~r~~~~~~~qrQrv 118 (671)
.+. +..... .++..+.. +..|+.. .......+.+|+||+
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred cccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 010 000000 01111100 0001110 011223456799999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||++++ ++||+|||+++||+.. +..+.++|.++. + +.|||++||+++.+...|++++++.+ |+++..
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~-G~i~~~ 226 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPIS------TTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLN-GEIIES 226 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEEC-CeEEEe
Confidence 9999999 9999999999999998 999999999985 3 78999999999999888888888877 999999
Q ss_pred cCcccccC
Q 005892 196 VPKPQAHM 203 (671)
Q Consensus 196 g~~~e~~~ 203 (671)
|+++++..
T Consensus 227 g~~~~~~~ 234 (250)
T PRK14266 227 GLTDQIFI 234 (250)
T ss_pred CCHHHHHh
Confidence 98877653
No 240
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=1.4e-23 Score=238.67 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=132.9
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+.. .+|++|++....
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--~~p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTI--EEGEVLGILGRSGAGKSVLMHVLRGMDQ--YEPTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhhccc--CCCCceEEEEeccccccccccc
Confidence 578999999954 36899999999 9999999999999999999999999950 037888743210
Q ss_pred ------------c--------------------------eEeccccC-------CCcchhhh------------------
Q 005892 80 ------------G--------------------------IWMARCAG-------IEPCTLIM------------------ 96 (671)
Q Consensus 80 ------------g--------------------------i~~~~~~~-------~~~~~~vl------------------ 96 (671)
| ..++.... .++..+..
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI 153 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 00010000 00111111
Q ss_pred hccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEec
Q 005892 97 DLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIR 171 (671)
Q Consensus 97 d~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtH 171 (671)
+..|+.. .......+++|+|||+||+|++ ++|||||||++||+.. +..++++|.++.++.|+|||+|||
T Consensus 154 ~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQT------AKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred HHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeC
Confidence 1112211 1112345677999999999999 9999999999999999 999999999997656899999999
Q ss_pred CCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 172 DKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 172 Dl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
|++.+...|++++++.+ |+|+..|++.++
T Consensus 228 d~~~~~~~~d~i~~l~~-G~i~~~g~~~~~ 256 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLEN-GEIKEEGTPDEV 256 (520)
T ss_pred CHHHHHHhcCEEEEEeC-CEEeeecCHHHH
Confidence 99999888999999988 999988876654
No 241
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=215.25 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=134.9
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC-
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK- 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~- 79 (671)
-+++|+++|+++.|++ ..++.++++.+ .+|++++|+|+|||||||||++|+|+. +| ++|++...+
T Consensus 4 ~~~~l~~~~l~~~~~~---~~il~~isl~i--~~Ge~~~l~G~nGsGKSTLlk~l~Gl~----~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 4 LIPAIKVKDLSFYYNT---SKAIEGISMDI--YRNKVTAIIGPSGCGKSTFIKTLNRIS----ELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred ccceEEEEEEEEEECC---eEeecceEEEE--cCCCEEEEECCCCCCHHHHHHHHHhhc----CcccCCccceEEEECCE
Confidence 3567999999999964 36899999999 999999999999999999999999998 43 478632111
Q ss_pred --------------ceEe-ccccC------CCcchhh-------------------hhccCCC------cccccccchHH
Q 005892 80 --------------GIWM-ARCAG------IEPCTLI-------------------MDLEGTD------GRERGEDDTAF 113 (671)
Q Consensus 80 --------------gi~~-~~~~~------~~~~~~v-------------------ld~~g~~------~~~r~~~~~~~ 113 (671)
++.+ ..... .++..+. ++..|+. ........+.+
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 154 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154 (259)
T ss_pred eccccccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 0100 00000 0111110 0111221 00112335677
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc--
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-- 188 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~-- 188 (671)
|+||++||+|++ ++|||||||++||+.. +..+.+++.++.+ +.|||++||+++.+...|++++++..
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~ 226 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIA------TMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDE 226 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccC
Confidence 999999999999 9999999999999998 9999999999853 58999999999999988999988862
Q ss_pred --CCeEEEecCcccccC
Q 005892 189 --IQKIWDSVPKPQAHM 203 (671)
Q Consensus 189 --~GkI~~~g~~~e~~~ 203 (671)
.|+++..|++.+++.
T Consensus 227 ~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 227 SRIGQMVEFGVTTQIFS 243 (259)
T ss_pred CCCceEEEeCCHHHHhc
Confidence 499999999887654
No 242
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=217.86 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=134.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK-- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~-- 79 (671)
.++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +| ++|++...+
T Consensus 19 ~~~l~i~nl~~~~~~---~~il~~vs~~i--~~Ge~~~I~G~nGsGKSTLl~~l~Gl~----~p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 19 APAMAAVNLTLGFAG---KTVLDQVSMGF--PARAVTSLMGPTGSGKTTFLRTLNRMN----DKVSGYRYSGDVLLGGRS 89 (276)
T ss_pred CcEEEEeeEEEEECC---EEEeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhccC----CcCCCCCCceEEEECCEE
Confidence 457999999999964 36899999999 999999999999999999999999998 54 578632111
Q ss_pred ------------ce-EeccccC------CCcchhh-------------------hhccCCCc------ccccccchHHHH
Q 005892 80 ------------GI-WMARCAG------IEPCTLI-------------------MDLEGTDG------RERGEDDTAFEK 115 (671)
Q Consensus 80 ------------gi-~~~~~~~------~~~~~~v-------------------ld~~g~~~------~~r~~~~~~~qr 115 (671)
.+ ++..... .+++.+. ++..++.. .......+.+|+
T Consensus 90 i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 90 IFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred ccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 01 0110000 0111110 01112211 011223567899
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
||++||++++ ++||+||||++||+.. +..++++|.++.+ +.|||+||||++.+...|++++++.+ |+|
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTT------TEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFD-GRL 240 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 9999999999864 48999999999998888999999988 999
Q ss_pred EEecCcccccC
Q 005892 193 WDSVPKPQAHM 203 (671)
Q Consensus 193 ~~~g~~~e~~~ 203 (671)
+..|++.++++
T Consensus 241 ~~~g~~~~~~~ 251 (276)
T PRK14271 241 VEEGPTEQLFS 251 (276)
T ss_pred EEeCCHHHHHh
Confidence 99998776653
No 243
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.8e-23 Score=235.63 Aligned_cols=174 Identities=12% Similarity=0.066 Sum_probs=132.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--e-Eecc
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--I-WMAR 85 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g--i-~~~~ 85 (671)
||+++|+++.|++ ..++.+++|.+ .+|++++|+||||||||||||+|+|+. +|++|++...+. + ++..
T Consensus 1 ml~i~~ls~~~~~---~~il~~vsl~i--~~Ge~~~liG~NGsGKSTLl~~l~Gl~----~p~~G~i~~~~~~~i~~~~q 71 (530)
T PRK15064 1 MLSTANITMQFGA---KPLFENISVKF--GGGNRYGLIGANGCGKSTFMKILGGDL----EPSAGNVSLDPNERLGKLRQ 71 (530)
T ss_pred CEEEEEEEEEeCC---cEeEeCCEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEecCCCEEEEEec
Confidence 4899999999964 36899999999 999999999999999999999999999 799997532211 1 1110
Q ss_pred ccCC-------Ccch--------------------------------------------------hhhhccCCCcc---c
Q 005892 86 CAGI-------EPCT--------------------------------------------------LIMDLEGTDGR---E 105 (671)
Q Consensus 86 ~~~~-------~~~~--------------------------------------------------~vld~~g~~~~---~ 105 (671)
.... ++.. .+++..|+... .
T Consensus 72 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 151 (530)
T PRK15064 72 DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYG 151 (530)
T ss_pred cCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcC
Confidence 0000 0000 11222233321 1
Q ss_pred ccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 106 RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 106 r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
.....+++|+||++||++++ ++|||||||++||+.. +..+.+++.+ .|.|||+||||++.+...|++
T Consensus 152 ~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 152 LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT------IRWLEDVLNE----RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH------HHHHHHHHHh----CCCeEEEEeCCHHHHHhhcce
Confidence 22456788999999999999 9999999999999998 8888888764 388999999999999888999
Q ss_pred hhhhhcCCeE-EEecCccccc
Q 005892 183 PVLREDIQKI-WDSVPKPQAH 202 (671)
Q Consensus 183 ~~ll~~~GkI-~~~g~~~e~~ 202 (671)
++++.+ |++ +..|++.+..
T Consensus 222 i~~l~~-g~i~~~~g~~~~~~ 241 (530)
T PRK15064 222 MADLDY-GELRVYPGNYDEYM 241 (530)
T ss_pred EEEEeC-CEEEEecCCHHHHH
Confidence 999988 999 4778776553
No 244
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=1.9e-23 Score=238.16 Aligned_cols=182 Identities=11% Similarity=0.089 Sum_probs=137.5
Q ss_pred ceEEEEeeeEEeccc--------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC
Q 005892 8 CSTQLIDGDGTFNVS--------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~--------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~ 79 (671)
++|+++|+++.|+.. +...++.++++.+ .+|++++|+||||||||||+|+|+|+. |++|++...+
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-----~~~G~i~~~g 346 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTL--RPGETLGLVGESGSGKSTTGLALLRLI-----NSQGEIWFDG 346 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEE--cCCCEEEEECCCCCCHHHHHHHHhCcC-----CCCcEEEECC
Confidence 479999999999521 0136899999999 999999999999999999999999998 4788742111
Q ss_pred ----------------ce--Eecccc--C------CCcchh--------------------hhhccCCCc---ccccccc
Q 005892 80 ----------------GI--WMARCA--G------IEPCTL--------------------IMDLEGTDG---RERGEDD 110 (671)
Q Consensus 80 ----------------gi--~~~~~~--~------~~~~~~--------------------vld~~g~~~---~~r~~~~ 110 (671)
.+ ..+... . .++..+ .++..|+.. .......
T Consensus 347 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 426 (529)
T PRK15134 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEF 426 (529)
T ss_pred EEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccC
Confidence 01 111100 0 000100 011123321 1122345
Q ss_pred hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh
Q 005892 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~ 187 (671)
+++|+|||+||+|++ ++|||||||++||+.. +..++++|.++.++.|.|||+||||++.+...|++++++.
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~ 500 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTV------QAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLR 500 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 677999999999999 9999999999999999 9999999999976568999999999999988899999998
Q ss_pred cCCeEEEecCcccccC
Q 005892 188 DIQKIWDSVPKPQAHM 203 (671)
Q Consensus 188 ~~GkI~~~g~~~e~~~ 203 (671)
+ |+|+..|++.++++
T Consensus 501 ~-G~i~~~~~~~~~~~ 515 (529)
T PRK15134 501 Q-GEVVEQGDCERVFA 515 (529)
T ss_pred C-CEEEEEcCHHHHhc
Confidence 8 99999998877654
No 245
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3e-23 Score=195.35 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=134.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
|.|+++++++.|+. ..++++|++.. ..|+.+.++||+|+|||||++.|+-+. -|.+|+.....
T Consensus 1 msirv~~in~~yg~---~q~lfdi~l~~--~~getlvllgpsgagkssllr~lnlle----~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 1 MSIQLNGINCFYGA---HQALFDITLDC--PEGETLVLLGPSGAGKSSLLRVLNLLE----MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CceEEccccccccc---chheeeeeecC--CCCCEEEEECCCCCchHHHHHHHHHHh----CCCCCeEEecccccccccC
Confidence 46999999999965 48999999998 999999999999999999999999888 68999732111
Q ss_pred -------------ceEeccccCCCcchhh--------hhccCCCccccc--------------------ccchHHHHHHH
Q 005892 80 -------------GIWMARCAGIEPCTLI--------MDLEGTDGRERG--------------------EDDTAFEKQSA 118 (671)
Q Consensus 80 -------------gi~~~~~~~~~~~~~v--------ld~~g~~~~~r~--------------------~~~~~~qrQrv 118 (671)
|..++... .-+.+.+ ..+.|+...+.. -..+++|+|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~-lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrv 150 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYN-LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRV 150 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhc-cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhH
Confidence 11111100 0011111 122233322111 01245599999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||+||+ ++|++||||++|||+- ...+..++++|.. .|+|-++|||.++.+...+.+++.|.+ |+|++.
T Consensus 151 aiaralmmkpqvllfdeptaaldpei------taqvv~iikel~~-tgitqvivthev~va~k~as~vvyme~-g~ive~ 222 (242)
T COG4161 151 AIARALMMEPQVLLFDEPTAALDPEI------TAQIVSIIKELAE-TGITQVIVTHEVEVARKTASRVVYMEN-GHIVEQ 222 (242)
T ss_pred HHHHHHhcCCcEEeecCcccccCHHH------HHHHHHHHHHHHh-cCceEEEEEeehhHHHhhhhheEeeec-CeeEee
Confidence 9999999 9999999999999988 8999999999976 599999999999999999999999988 999999
Q ss_pred cCcc
Q 005892 196 VPKP 199 (671)
Q Consensus 196 g~~~ 199 (671)
|+..
T Consensus 223 g~a~ 226 (242)
T COG4161 223 GDAS 226 (242)
T ss_pred cchh
Confidence 9854
No 246
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.89 E-value=2.5e-23 Score=241.36 Aligned_cols=178 Identities=18% Similarity=0.216 Sum_probs=138.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.|+++|++++|+.. ...++.++++.+ .+|+.+||+|+||||||||+|+|.|+. .|.+|++... |.-+.
T Consensus 471 ~I~~~nvsf~y~~~-~~~vL~~isL~I--~~Ge~vaIvG~SGsGKSTL~KLL~gly----~p~~G~I~~d-g~dl~~i~~ 542 (709)
T COG2274 471 EIEFENVSFRYGPD-DPPVLEDLSLEI--PPGEKVAIVGRSGSGKSTLLKLLLGLY----KPQQGRILLD-GVDLNDIDL 542 (709)
T ss_pred eEEEEEEEEEeCCC-CcchhhceeEEe--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEEC-CEeHHhcCH
Confidence 49999999999764 347999999999 999999999999999999999999999 8999984211 11100
Q ss_pred ------------c-----ccCCCcch----------------------hhhhcc-CC--CcccccccchHHHHHHHHHHH
Q 005892 85 ------------R-----CAGIEPCT----------------------LIMDLE-GT--DGRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 85 ------------~-----~~~~~~~~----------------------~vld~~-g~--~~~~r~~~~~~~qrQrv~iAl 122 (671)
. .+..+|+. ++...+ |. .-.+.+.-.+++||||+++||
T Consensus 543 ~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 543 ASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 0 00011110 011110 11 123445556788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|+. .+|||||||++||+.+ .+.|.+.|.++. .|.|+|+|+|.+..+. .||++++++. |+|+.+|+.+
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~s------E~~I~~~L~~~~--~~~T~I~IaHRl~ti~-~adrIiVl~~-Gkiv~~gs~~ 692 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPET------EAIILQNLLQIL--QGRTVIIIAHRLSTIR-SADRIIVLDQ-GKIVEQGSHE 692 (709)
T ss_pred HhccCCCEEEEeCcccccCHhH------HHHHHHHHHHHh--cCCeEEEEEccchHhh-hccEEEEccC-CceeccCCHH
Confidence 999 9999999999999999 999999999986 3799999999998776 4888888888 9999999998
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
++...
T Consensus 693 ell~~ 697 (709)
T COG2274 693 ELLAQ 697 (709)
T ss_pred HHHHh
Confidence 87643
No 247
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.89 E-value=1.6e-23 Score=216.35 Aligned_cols=180 Identities=17% Similarity=0.142 Sum_probs=128.5
Q ss_pred EEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----------
Q 005892 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----------- 79 (671)
Q Consensus 11 ~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----------- 79 (671)
++.|+++. .++.++++.+ .+|++++|+||||||||||+++|+|+. + .+|++...+
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i--~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~-~~G~i~~~g~~i~~~~~~~~ 67 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEV--RAGEILHLVGPNGAGKSTLLARMAGLL----P-GSGSIQFAGQPLEAWSAAEL 67 (248)
T ss_pred cccccchh-------ceecceEEEE--cCCCEEEEECCCCCCHHHHHHHHcCCC----C-CCeEEEECCEecCcCCHHHH
Confidence 46667663 2678899999 999999999999999999999999998 3 478642111
Q ss_pred --ce-EeccccCCCcchhhhh------------------------ccCCCc--ccccccchHHHHHHHHHHHHHH-----
Q 005892 80 --GI-WMARCAGIEPCTLIMD------------------------LEGTDG--RERGEDDTAFEKQSALFALAVS----- 125 (671)
Q Consensus 80 --gi-~~~~~~~~~~~~~vld------------------------~~g~~~--~~r~~~~~~~qrQrv~iAlAL~----- 125 (671)
.+ ++...........+.+ ..|+.. .......+.+|+||++||+|++
T Consensus 68 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 68 ARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred hhheEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 01 1111000000000111 112211 1112234567999999999997
Q ss_pred -----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 126 -----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 126 -----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++||+||||++||+.. +..+.+++.++.++ |.|||++|||++++...|++++++.+ |+++..|++.+
T Consensus 148 ~~p~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 219 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQ------QAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQ-GKLLASGRRDE 219 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 7999999999999998 99999999998754 89999999999988888999999988 99999998776
Q ss_pred ccCCccccchhc
Q 005892 201 AHMETPLSEFFN 212 (671)
Q Consensus 201 ~~~~~~l~~~f~ 212 (671)
+.....+.+.|+
T Consensus 220 ~~~~~~~~~~~~ 231 (248)
T PRK03695 220 VLTPENLAQVFG 231 (248)
T ss_pred HhCchHHHHHhC
Confidence 654333444443
No 248
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.88 E-value=2.8e-23 Score=217.74 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=132.0
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|... ...++.++++.+ .+|++++|+|||||||||||++|+|+. + .+|++...+
T Consensus 3 i~~~nls~~~~~~-~~~~l~~isl~I--~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~-~~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 3 MTVKDLTAKYTEG-GNAVLENISFSI--SPGQRVGLLGRTGSGKSTLLSAFLRLL----N-TEGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred EEEEEEEEEeCCC-CCcceeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhhhc----C-CCcEEEECCEEhhhCCHHH
Confidence 7899999999532 246899999999 999999999999999999999999998 4 678743111
Q ss_pred ---ceEe-ccccCC------Ccch-----------hhhhccCCCccc-------------ccccchHHHHHHHHHHHHHH
Q 005892 80 ---GIWM-ARCAGI------EPCT-----------LIMDLEGTDGRE-------------RGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ---gi~~-~~~~~~------~~~~-----------~vld~~g~~~~~-------------r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+.+ ...... ++.. -.++..|+.... .+...+.+|+||+++|+|++
T Consensus 75 lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 75 WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 0111 000000 0110 001111221110 01125678999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++||+||||++||+.. ...+.+.|.+++ .++|||+|||+++.+.. |++++++.+ |+|+..|+|.+++
T Consensus 155 ~~p~illlDEpts~LD~~~------~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~-G~i~~~g~~~~l~ 224 (275)
T cd03289 155 SKAKILLLDEPSAHLDPIT------YQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEE-NKVRQYDSIQKLL 224 (275)
T ss_pred cCCCEEEEECccccCCHHH------HHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecC-CeEeecCCHHHHh
Confidence 9999999999999998 899999999874 38999999999987764 899988887 9999999998876
Q ss_pred CC
Q 005892 203 ME 204 (671)
Q Consensus 203 ~~ 204 (671)
.+
T Consensus 225 ~~ 226 (275)
T cd03289 225 NE 226 (275)
T ss_pred hC
Confidence 53
No 249
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.88 E-value=8.5e-23 Score=207.51 Aligned_cols=172 Identities=14% Similarity=0.139 Sum_probs=125.8
Q ss_pred CCcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----
Q 005892 5 EECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----- 79 (671)
Q Consensus 5 ~~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----- 79 (671)
...++|+++|+++.|+......++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~ 80 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTL--HPGEVTALVGPSGSGKSTVVALLENFY----QPQGGQVLLDGKPISQ 80 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCcEEEECCCchHH
Confidence 3456899999999996421135899999999 999999999999999999999999999 89999742111
Q ss_pred --------ceEe-ccccC------CCcchhh---------------------hhcc--CCCc--ccccccchHHHHHHHH
Q 005892 80 --------GIWM-ARCAG------IEPCTLI---------------------MDLE--GTDG--RERGEDDTAFEKQSAL 119 (671)
Q Consensus 80 --------gi~~-~~~~~------~~~~~~v---------------------ld~~--g~~~--~~r~~~~~~~qrQrv~ 119 (671)
.+.+ ..... .++..+. ++.. |+.. .......+.+|+||++
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 81 YEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred cCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 0110 00000 0000000 0000 1211 1112335677999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
+|++++ ++||+||||++||+.. +..+.+++.++.+ +.|+|+||||++++. .|++++++.+ |++
T Consensus 161 laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~-g~i 226 (226)
T cd03248 161 IARALIRNPQVLILDEATSALDAES------EQQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLDG-GRI 226 (226)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEecC-CcC
Confidence 999999 9999999999999999 9999999999854 589999999998886 4888888877 764
No 250
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.88 E-value=2.1e-23 Score=212.84 Aligned_cols=164 Identities=15% Similarity=0.138 Sum_probs=122.5
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC----CCCeeeccC-----------ceE-ecccc--C
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA----FKGRSQTTK-----------GIW-MARCA--G 88 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p----~sG~~q~~~-----------gi~-~~~~~--~ 88 (671)
++.++++.+ .+|++++|+||||||||||+++|+|+. +| ++|++...+ .+. +.... .
T Consensus 1 ~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 74 (230)
T TIGR02770 1 LVQDLNLSL--KRGEVLALVGESGSGKSLTCLAILGLL----PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTA 74 (230)
T ss_pred CccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCccCccccEEEECCEechhhhhhhheeEEEecCchhh
Confidence 357888999 899999999999999999999999999 77 789742111 111 10000 0
Q ss_pred CCcch-------h------------------hhhccCCCc-----ccccccchHHHHHHHHHHHHHH---HHHhcccccc
Q 005892 89 IEPCT-------L------------------IMDLEGTDG-----RERGEDDTAFEKQSALFALAVS---DIVLINMWCH 135 (671)
Q Consensus 89 ~~~~~-------~------------------vld~~g~~~-----~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~ 135 (671)
..+.. . .++..++.. .......+.+|+||++||+|++ ++|||||||+
T Consensus 75 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 75 FNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred cCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 00000 0 011112220 1122345677999999999999 9999999999
Q ss_pred CCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 136 ~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
+||+.. +..+.+.+.++.++.|+|||++||+++++...|++++++.+ |++...|++++++.
T Consensus 155 ~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 155 DLDVVN------QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD-GRIVERGTVKEIFY 215 (230)
T ss_pred ccCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 999998 99999999998765589999999999998888999999988 99999998777653
No 251
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.88 E-value=5.4e-23 Score=239.03 Aligned_cols=175 Identities=14% Similarity=0.091 Sum_probs=132.1
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe---
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--- 83 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~--- 83 (671)
|+||++.|++++|++ ..++.+++|.+ .+|++++|+||||||||||||+|+|+. +|++|++...++..+
T Consensus 1 m~~l~i~~ls~~~~~---~~il~~is~~i--~~Ge~v~LvG~NGsGKSTLLriiaG~~----~p~~G~I~~~~~~~~~~l 71 (635)
T PRK11147 1 MSLISIHGAWLSFSD---APLLDNAELHI--EDNERVCLVGRNGAGKSTLMKILNGEV----LLDDGRIIYEQDLIVARL 71 (635)
T ss_pred CcEEEEeeEEEEeCC---ceeEeCcEEEE--CCCCEEEEECCCCCCHHHHHHHHcCCC----CCCCeEEEeCCCCEEEEe
Confidence 347999999999964 36899999999 999999999999999999999999998 799998543222111
Q ss_pred ccccCCCcch-----------------------------------------------------------hhhhccCCCcc
Q 005892 84 ARCAGIEPCT-----------------------------------------------------------LIMDLEGTDGR 104 (671)
Q Consensus 84 ~~~~~~~~~~-----------------------------------------------------------~vld~~g~~~~ 104 (671)
.......... .+++..|+...
T Consensus 72 ~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 151 (635)
T PRK11147 72 QQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD 151 (635)
T ss_pred ccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCC
Confidence 0000000000 00111122211
Q ss_pred cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 105 ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 105 ~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
......+++|+|||+||++++ ++|||||||++||+.. +..+.++|.++ +.|||+||||..++...|+
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~------~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d 221 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET------IEWLEGFLKTF----QGSIIFISHDRSFIRNMAT 221 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH------HHHHHHHHHhC----CCEEEEEeCCHHHHHHhcC
Confidence 223445788999999999999 9999999999999998 99999999887 2499999999999988899
Q ss_pred chhhhhcCCeEEE-ecCcccc
Q 005892 182 EPVLREDIQKIWD-SVPKPQA 201 (671)
Q Consensus 182 ~~~ll~~~GkI~~-~g~~~e~ 201 (671)
+++++.+ |+++. .|+....
T Consensus 222 ~i~~L~~-G~i~~~~g~~~~~ 241 (635)
T PRK11147 222 RIVDLDR-GKLVSYPGNYDQY 241 (635)
T ss_pred eEEEEEC-CEEEEecCCHHHH
Confidence 9998888 99974 5665443
No 252
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.88 E-value=5.8e-23 Score=208.96 Aligned_cols=174 Identities=14% Similarity=0.073 Sum_probs=128.9
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC---CCCCeeecc------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD---AFKGRSQTT------ 78 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~---p~sG~~q~~------ 78 (671)
.+.++|+++.|.+.. ...++.++++.+ .+|++++|+||||||||||+++|+|+. + |++|++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLlk~l~G~~----~~~~~~~G~i~~~g~~~~~ 76 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHV--ESGQVMAILGSSGSGKTTLLDAISGRV----EGGGTTSGQILFNGQPRKP 76 (226)
T ss_pred cceeecceeeeecCccccccccCceEEE--cCCeEEEEECCCCCCHHHHHHHHhCcc----CCCCCCceEEEECCEECCh
Confidence 467999999996532 357999999999 999999999999999999999999999 6 788874211
Q ss_pred ----CceEe-ccccC-------CCcchhh----------------------hhccCCCc--ccccccchHHHHHHHHHHH
Q 005892 79 ----KGIWM-ARCAG-------IEPCTLI----------------------MDLEGTDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 79 ----~gi~~-~~~~~-------~~~~~~v----------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
.++.+ ..... .++..+. ++..++.. .......+.+|+||+++|+
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 77 DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHH
Confidence 01111 10000 0111110 00011110 0111234567999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC-CcccccccchhhhhcCCeEEEec
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl-~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+++ +++|+|||+++||+.+ +..+.+++.++.+. |.|+|++||++ +.+...|++++++.+ |+++..|
T Consensus 157 al~~~p~illlDEP~~gLD~~~------~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFT------ALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 999 9999999999999998 99999999998765 89999999999 478888999999888 9998754
No 253
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.8e-23 Score=205.00 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=129.3
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE---
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~--- 82 (671)
++++|+++|++..|+++ .++.+++-.+ .+||-.+|+|||||||||||++++|-. .|++|.....+...
T Consensus 28 ~~~li~l~~v~v~r~gk---~iL~~isW~V--~~ge~W~I~G~NGsGKTTLL~ll~~~~----~pssg~~~~~G~~~G~~ 98 (257)
T COG1119 28 NEPLIELKNVSVRRNGK---KILGDLSWQV--NPGEHWAIVGPNGAGKTTLLSLLTGEH----PPSSGDVTLLGRRFGKG 98 (257)
T ss_pred CcceEEecceEEEECCE---eeccccceee--cCCCcEEEECCCCCCHHHHHHHHhccc----CCCCCceeeeeeeccCC
Confidence 34679999999999764 8999999999 999999999999999999999999999 68777632110000
Q ss_pred -----eccccCC---------Ccchhhh------------------------------hccCCCccc--ccccchHHHHH
Q 005892 83 -----MARCAGI---------EPCTLIM------------------------------DLEGTDGRE--RGEDDTAFEKQ 116 (671)
Q Consensus 83 -----~~~~~~~---------~~~~~vl------------------------------d~~g~~~~~--r~~~~~~~qrQ 116 (671)
+...+|. .....+. +..|..... .-...+.+|+|
T Consensus 99 ~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 99 ETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred cchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence 0001110 0000011 111111100 01123455999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCC-CCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~-~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
||+||||++ ++||||||++|||... +..+.+.+.++... .+.++|||||..++++...+++.++.+ |++
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~------re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~-g~v 251 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIA------REQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE-GEV 251 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHH------HHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeC-Cce
Confidence 999999999 9999999999999998 99999999988653 478999999999999876777777777 999
Q ss_pred EEecC
Q 005892 193 WDSVP 197 (671)
Q Consensus 193 ~~~g~ 197 (671)
+..|.
T Consensus 252 ~~~g~ 256 (257)
T COG1119 252 VAQGK 256 (257)
T ss_pred eeccc
Confidence 98764
No 254
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=5.1e-23 Score=235.84 Aligned_cols=176 Identities=14% Similarity=0.099 Sum_probs=132.4
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--ce-Ee
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GI-WM 83 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--gi-~~ 83 (671)
++||+++|+++.|++ -..++.+++|.+ .+|++++|+|||||||||||++|+|+. +|++|++.... .+ ++
T Consensus 4 ~~~l~i~~l~~~y~~--~~~il~~vs~~i--~~Ge~~~iiG~NGsGKSTLlk~i~G~~----~p~~G~i~~~~~~~i~~v 75 (556)
T PRK11819 4 QYIYTMNRVSKVVPP--KKQILKDISLSF--FPGAKIGVLGLNGAGKSTLLRIMAGVD----KEFEGEARPAPGIKVGYL 75 (556)
T ss_pred cEEEEEeeEEEEeCC--CCeeeeCceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEecCCCEEEEE
Confidence 348999999999962 146999999999 999999999999999999999999999 79999853221 11 11
Q ss_pred ccccC-------CCcchhh------------------------------------------------------hhccCCC
Q 005892 84 ARCAG-------IEPCTLI------------------------------------------------------MDLEGTD 102 (671)
Q Consensus 84 ~~~~~-------~~~~~~v------------------------------------------------------ld~~g~~ 102 (671)
..... .++..+. ++..|+.
T Consensus 76 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 155 (556)
T PRK11819 76 PQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP 155 (556)
T ss_pred ecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC
Confidence 11111 1111110 0111111
Q ss_pred c-ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccc
Q 005892 103 G-RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (671)
Q Consensus 103 ~-~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~ 178 (671)
. .......+++|+|||+||++++ ++|||||||++||+.. +..+.++|.++ +.|||+||||++++..
T Consensus 156 ~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~------~~~l~~~L~~~----~~tviiisHd~~~~~~ 225 (556)
T PRK11819 156 PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES------VAWLEQFLHDY----PGTVVAVTHDRYFLDN 225 (556)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHH------HHHHHHHHHhC----CCeEEEEeCCHHHHHh
Confidence 1 1122345688999999999999 9999999999999999 99999999886 2499999999999988
Q ss_pred cccchhhhhcCCeEE-EecCcccc
Q 005892 179 ENLEPVLREDIQKIW-DSVPKPQA 201 (671)
Q Consensus 179 ~~~~~~ll~~~GkI~-~~g~~~e~ 201 (671)
.|++++++.+ |+++ ..|+.++.
T Consensus 226 ~~d~i~~l~~-g~i~~~~g~~~~~ 248 (556)
T PRK11819 226 VAGWILELDR-GRGIPWEGNYSSW 248 (556)
T ss_pred hcCeEEEEeC-CEEEEecCCHHHH
Confidence 8999999988 9986 66766554
No 255
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.9e-23 Score=233.47 Aligned_cols=173 Identities=18% Similarity=0.192 Sum_probs=131.4
Q ss_pred EEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------------
Q 005892 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------------ 79 (671)
Q Consensus 12 i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------------ 79 (671)
++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i--~~Ge~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKV--RPHSIHALMGENGAGKSTLLKCLFGIY----QKDSGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCEECCCCCHHHHH
Confidence 3689999954 36899999999 999999999999999999999999999 79999743111
Q ss_pred --ce-EeccccCCCcchhhhh----------------------------ccCCCc--ccccccchHHHHHHHHHHHHHH-
Q 005892 80 --GI-WMARCAGIEPCTLIMD----------------------------LEGTDG--RERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 80 --gi-~~~~~~~~~~~~~vld----------------------------~~g~~~--~~r~~~~~~~qrQrv~iAlAL~- 125 (671)
.+ ++...........+.+ ..|+.. .......+++|+||++||+|++
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 11 1110000000001111 112211 1112345677999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
++|||||||++||+.. +..+.+++.++.+. |.|+|+||||++++...|++++++.+ |+|+..|++.+.
T Consensus 152 ~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 221 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKE------VNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRD-GQWIATQPLAGL 221 (491)
T ss_pred CCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEeecChhhC
Confidence 9999999999999999 99999999999754 99999999999999888999999988 999999987664
No 256
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.88 E-value=3e-23 Score=219.15 Aligned_cols=185 Identities=11% Similarity=0.146 Sum_probs=146.1
Q ss_pred CcceEEEEeeeEEeccc-cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec
Q 005892 6 ECCSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA 84 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~-~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~ 84 (671)
.++.+.+.|++..|... +...++++|+|.+ .+||.+||+|.+|||||-..+.++|++ |..+.....+.+.+.
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i--~~GEtlAlVGESGSGKSvTa~sim~LL-----p~~~~~~~sg~i~f~ 75 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDI--EAGETLALVGESGSGKSVTALSILGLL-----PSPAAAHPSGSILFD 75 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeee--cCCCEEEEEecCCCCccHHHHHHHHhc-----CCCcccCccceeEEc
Confidence 34689999999999632 3568999999999 999999999999999999999999999 443321111122222
Q ss_pred ccc--------------------------CCC--------------------------cchhhhhccCCCccccc-----
Q 005892 85 RCA--------------------------GIE--------------------------PCTLIMDLEGTDGRERG----- 107 (671)
Q Consensus 85 ~~~--------------------------~~~--------------------------~~~~vld~~g~~~~~r~----- 107 (671)
+.. ..+ ...-.++..|++..++.
T Consensus 76 G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP 155 (534)
T COG4172 76 GEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP 155 (534)
T ss_pred ChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC
Confidence 110 011 12223455566554432
Q ss_pred ccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchh
Q 005892 108 EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ 184 (671)
...+++|||||+||+||+ ++||.||||++||..- +.+|++++++|.++.|++++|||||+..+..++|+++
T Consensus 156 HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtv------QaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~ 229 (534)
T COG4172 156 HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV------QAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY 229 (534)
T ss_pred cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhh------HHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEE
Confidence 234677999999999999 9999999999999887 9999999999999999999999999999999999999
Q ss_pred hhhcCCeEEEecCcccccCC
Q 005892 185 LREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 185 ll~~~GkI~~~g~~~e~~~~ 204 (671)
+|.+ |+|++.|+.+.+|..
T Consensus 230 VM~~-G~ivE~~~t~~lF~~ 248 (534)
T COG4172 230 VMQH-GEIVETGTTETLFAA 248 (534)
T ss_pred EEec-cEEeecCcHHHHhhC
Confidence 9999 999999998887754
No 257
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=8e-23 Score=204.81 Aligned_cols=157 Identities=11% Similarity=0.130 Sum_probs=115.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
||+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 1 MLEARNLACERDE---RILFSGLSFTL--NAGELVQIEGPNGAGKTSLLRILAGLA----RPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred CeEEEEEEEEECC---EEEEecceEEE--CCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEcccchHH
Confidence 4899999999964 36899999999 999999999999999999999999999 799997422110
Q ss_pred ----e-EeccccC-------CCcchh---------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH---HHH
Q 005892 81 ----I-WMARCAG-------IEPCTL---------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIV 128 (671)
Q Consensus 81 ----i-~~~~~~~-------~~~~~~---------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evL 128 (671)
+ ++..... .++..+ +++..|+.. .......+.+|+||+++|+|++ +++
T Consensus 72 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 151 (204)
T PRK13538 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLW 151 (204)
T ss_pred hhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 0 0000000 001111 111112211 1111234567999999999999 999
Q ss_pred hccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 129 lLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
++||||++||+.. +..+.++|.++.++ |.|+|+||||++.+.....
T Consensus 152 llDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 152 ILDEPFTAIDKQG------VARLEALLAQHAEQ-GGMVILTTHQDLPVASDKV 197 (204)
T ss_pred EEeCCCccCCHHH------HHHHHHHHHHHHHC-CCEEEEEecChhhhccCCc
Confidence 9999999999999 99999999998754 8999999999988875333
No 258
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.88 E-value=4e-23 Score=210.95 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=119.1
Q ss_pred cccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc---------eEeccccC-------CCcc
Q 005892 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---------IWMARCAG-------IEPC 92 (671)
Q Consensus 29 ~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g---------i~~~~~~~-------~~~~ 92 (671)
.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+. .++..... .++.
T Consensus 2 ~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 2 KGVNLTI--QQGEFISLIGHSGCGKSTLLNLISGLA----QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHH
Confidence 5678888 899999999999999999999999999 799997432110 11111111 0111
Q ss_pred hhh--------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhH
Q 005892 93 TLI--------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPL 147 (671)
Q Consensus 93 ~~v--------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~ 147 (671)
.+. ++..|+.. .......+++|+||++||++++ ++||+||||++||+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~------ 149 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT------ 149 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH------
Confidence 110 11112211 0111234567999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 148 LKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 148 ~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+..+.++|.++.++.|.|||+||||++.+...|++++++.+ |+++..|++..+
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~-G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTN-GPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC-CcEecccCceec
Confidence 99999999998765589999999999988888999999988 999988865444
No 259
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.88 E-value=5.5e-23 Score=232.73 Aligned_cols=178 Identities=12% Similarity=0.113 Sum_probs=133.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-CCCeeeccC-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-~sG~~q~~~------- 79 (671)
++|+++|+++.|+..+...++.++++.+ .+|++++|+||||||||||||+|+|+. +| ++|++...+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~l~G~~----~p~~~G~i~~~g~~~~~~~ 329 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSL--RRGEILGVAGLVGAGRTELVQALFGAY----PGKFEGNVFINGKPVDIRN 329 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEE--eCCcEEEEeCCCCCCHHHHHHHHhCCC----CCCCCeEEEECCEECCCCC
Confidence 4799999999994211135899999999 999999999999999999999999998 64 788743211
Q ss_pred -------ce-Eecccc---CCC-------cchh-----------------------hhhccCCCc---ccccccchHHHH
Q 005892 80 -------GI-WMARCA---GIE-------PCTL-----------------------IMDLEGTDG---RERGEDDTAFEK 115 (671)
Q Consensus 80 -------gi-~~~~~~---~~~-------~~~~-----------------------vld~~g~~~---~~r~~~~~~~qr 115 (671)
++ ++.... ... +..+ .++..++.. .......+++|+
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 330 PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred HHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHH
Confidence 00 000000 000 0000 111122211 112234567899
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
||++||++++ ++|||||||++||+.. +..+++++.++.++ |.|||+||||++++..+|++++++.+ |+|
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~-G~i 481 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGA------KYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGE-GKL 481 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999999765 99999999999999889999998887 999
Q ss_pred EEecCcc
Q 005892 193 WDSVPKP 199 (671)
Q Consensus 193 ~~~g~~~ 199 (671)
+..++.+
T Consensus 482 ~~~~~~~ 488 (500)
T TIGR02633 482 KGDFVNH 488 (500)
T ss_pred EEEEccc
Confidence 9877654
No 260
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.2e-23 Score=212.31 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=134.9
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC-
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK- 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~- 79 (671)
..+.+.++++++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +| ++|++...+
T Consensus 5 ~~~~~~~~~~~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~~~~~~G~i~~~g~ 75 (261)
T PRK14263 5 APIVMDCKLDKIFYGN---FMAVRDSHVPI--RKNEITGFIGPSGCGKSTVLRSLNRMN----DLVKGFRFEGHVHFLGQ 75 (261)
T ss_pred CCceEEEEeEEEEeCC---EEEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHccc----ccccCCCCceEEEECCE
Confidence 3457999999999964 36899999999 999999999999999999999999998 54 678632110
Q ss_pred --------------ceEe-ccccC------CCcchh-----------------hhhccCCCcc------cccccchHHHH
Q 005892 80 --------------GIWM-ARCAG------IEPCTL-----------------IMDLEGTDGR------ERGEDDTAFEK 115 (671)
Q Consensus 80 --------------gi~~-~~~~~------~~~~~~-----------------vld~~g~~~~------~r~~~~~~~qr 115 (671)
.+.+ ..... .++..+ .++..++... ......+.+|+
T Consensus 76 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 76 DVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred eccccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 0100 00000 011111 1111122110 11123467799
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh-----
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE----- 187 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~----- 187 (671)
||+++|+|++ ++||+||||+|||+.. +..+++++.++. + +.|+|++||+++++...|++++++.
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~------~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~ 227 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIA------TRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQ 227 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEeccccc
Confidence 9999999999 9999999999999999 999999999985 3 7899999999999888899999985
Q ss_pred --cCCeEEEecCcccccC
Q 005892 188 --DIQKIWDSVPKPQAHM 203 (671)
Q Consensus 188 --~~GkI~~~g~~~e~~~ 203 (671)
+.|+++..|++++++.
T Consensus 228 ~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 228 GTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred ccCCceEEEeCCHHHHHh
Confidence 2499999998877654
No 261
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=1.9e-22 Score=209.34 Aligned_cols=179 Identities=16% Similarity=0.107 Sum_probs=132.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
+..|+++|+++.|+.. ...++.++++.+ .+|++++|+|+||||||||+++|+|+. +|++|++...+
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYI--KPGQKVGICGRTGSGKSSLSLAFFRMV----DIFDGKIVIDGIDISKLP 89 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEE--cCCCEEEEECCCCCCHHHHHHHHHccc----CCCCCeEEECCEEhhhCC
Confidence 3479999999999642 236899999999 999999999999999999999999998 79999742110
Q ss_pred ------ceE-eccccCCCcc-----------------hhhhhccCCC-----------c--ccccccchHHHHHHHHHHH
Q 005892 80 ------GIW-MARCAGIEPC-----------------TLIMDLEGTD-----------G--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ------gi~-~~~~~~~~~~-----------------~~vld~~g~~-----------~--~~r~~~~~~~qrQrv~iAl 122 (671)
.+. +.......+. ...++..++. . .......+.+|+||+++|+
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred HHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 011 0100000000 0000001110 0 0011245678999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++||+||||++||+.. ...+++++.++. + +.|+|++||+++.+.. |++++++.+ |+++..|++.
T Consensus 170 al~~~p~llllDEPt~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~dri~~l~~-G~i~~~g~~~ 239 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMAT------ENILQKVVMTAF-A-DRTVVTIAHRVSTILD-ADLVLVLSR-GILVECDTPE 239 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHhc-C-CCEEEEEecChHHHHh-CCEEEEEEC-CEEEEeCCHH
Confidence 999 9999999999999998 899999999874 3 8999999999998875 888888887 9999998876
Q ss_pred ccc
Q 005892 200 QAH 202 (671)
Q Consensus 200 e~~ 202 (671)
++.
T Consensus 240 ~~~ 242 (257)
T cd03288 240 NLL 242 (257)
T ss_pred HHH
Confidence 654
No 262
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.9e-23 Score=232.46 Aligned_cols=174 Identities=13% Similarity=0.187 Sum_probs=132.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+ .++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 264 ~~l~~~~l~~~~~-----~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLlk~i~Gl~----~p~~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 264 TVFEVRNVTSRDR-----KKVRDISFSV--CRGEILGFAGLVGSGRTELMNCLFGVD----KRAGGEIRLNGKDISPRSP 332 (510)
T ss_pred cEEEEeCccccCC-----CcccceeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----cCCCCeEEECCEECCCCCH
Confidence 4799999998762 3789999999 999999999999999999999999999 79999843111
Q ss_pred ------ce-Eeccc---cCCCcchhh----------------------------------hhccCCC-c--ccccccchH
Q 005892 80 ------GI-WMARC---AGIEPCTLI----------------------------------MDLEGTD-G--RERGEDDTA 112 (671)
Q Consensus 80 ------gi-~~~~~---~~~~~~~~v----------------------------------ld~~g~~-~--~~r~~~~~~ 112 (671)
++ ++... ....+...+ ++..|+. . .......++
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG 412 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence 11 11110 000000001 1112221 1 111234567
Q ss_pred HHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcC
Q 005892 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (671)
Q Consensus 113 ~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~ 189 (671)
+|+|||+||++++ ++|||||||++||+.. +..+.++|.++.++ |.|||+||||++.+...|++++++.+
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~~- 484 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA------KAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCE- 484 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEEC-
Confidence 8999999999999 9999999999999999 99999999999764 99999999999999888999988888
Q ss_pred CeEEEecCccc
Q 005892 190 QKIWDSVPKPQ 200 (671)
Q Consensus 190 GkI~~~g~~~e 200 (671)
|+|+..+++.+
T Consensus 485 G~i~~~~~~~~ 495 (510)
T PRK09700 485 GRLTQILTNRD 495 (510)
T ss_pred CEEEEEecCcc
Confidence 99998876644
No 263
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.3e-22 Score=203.92 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=115.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
+|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 72 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTL--AAGEALVLTGPNGSGKTTLLRLIAGLL----PPAAGTIKLDGGDIDDPDVA 72 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEeCcchhhH
Confidence 6999999999964 35899999999 999999999999999999999999998 799997432110
Q ss_pred --e-EeccccC-------CCcchh--------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhcc
Q 005892 81 --I-WMARCAG-------IEPCTL--------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLIN 131 (671)
Q Consensus 81 --i-~~~~~~~-------~~~~~~--------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLD 131 (671)
+ ++..... .++..+ .++..|+.. .......+.+|+||+++|++++ ++||+|
T Consensus 73 ~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 152 (207)
T PRK13539 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD 152 (207)
T ss_pred hhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0 1110000 001110 011112211 1111234667999999999999 999999
Q ss_pred ccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccc
Q 005892 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (671)
Q Consensus 132 Ept~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~ 178 (671)
|||++||+.. +..+.++|.++.++ |.|||++||+++++..
T Consensus 153 EPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 153 EPTAALDAAA------VALFAELIRAHLAQ-GGIVIAATHIPLGLPG 192 (207)
T ss_pred CCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCchhhcc
Confidence 9999999999 99999999998765 9999999999988773
No 264
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.9e-23 Score=236.69 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=131.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce---Eec
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---WMA 84 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi---~~~ 84 (671)
++|++.|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++....++ ++.
T Consensus 311 ~~l~~~~l~~~y~~---~~il~~isl~i--~~Ge~~~l~G~NGsGKSTLlk~l~G~~----~p~~G~i~~~~~~~igy~~ 381 (638)
T PRK10636 311 PLLKMEKVSAGYGD---RIILDSIKLNL--VPGSRIGLLGRNGAGKSTLIKLLAGEL----APVSGEIGLAKGIKLGYFA 381 (638)
T ss_pred ceEEEEeeEEEeCC---eeeeccceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEECCCEEEEEec
Confidence 47999999999964 36899999999 999999999999999999999999999 7999985432121 111
Q ss_pred ccc--CCCcchhh-------------------hhccCCCc---ccccccchHHHHHHHHHHHHHH---HHHhccccccCC
Q 005892 85 RCA--GIEPCTLI-------------------MDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (671)
Q Consensus 85 ~~~--~~~~~~~v-------------------ld~~g~~~---~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~L 137 (671)
... .......+ +...++.. .......+++|+|||+||++++ ++|||||||++|
T Consensus 382 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L 461 (638)
T PRK10636 382 QHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461 (638)
T ss_pred CcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 110 00000001 11123321 1122445788999999999999 999999999999
Q ss_pred ChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE-EecCcc
Q 005892 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKP 199 (671)
Q Consensus 138 D~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~-~~g~~~ 199 (671)
|+.. +..+.++|.++ . | |||+||||+.++..+|++++++.+ |+|+ ..|+..
T Consensus 462 D~~~------~~~l~~~L~~~--~-g-tvi~vSHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~ 513 (638)
T PRK10636 462 DLDM------RQALTEALIDF--E-G-ALVVVSHDRHLLRSTTDDLYLVHD-GKVEPFDGDLE 513 (638)
T ss_pred CHHH------HHHHHHHHHHc--C-C-eEEEEeCCHHHHHHhCCEEEEEEC-CEEEEcCCCHH
Confidence 9999 99999999887 2 4 999999999999888999998887 9986 566543
No 265
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=215.71 Aligned_cols=178 Identities=13% Similarity=0.141 Sum_probs=131.8
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC-----CCCCeeeccC---
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK--- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~q~~~--- 79 (671)
.+|.+.|+++.|+. ..++.++++.+ .+|++++|+|||||||||||++|+|+. + |++|++...+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i--~~Ge~~~IvG~nGsGKSTLl~~L~Gl~----~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDI--PEKSVTALIGPSGCGKSTFLRCLNRMN----DRIKAARIDGSVELDGQDI 114 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----cccCCCCCceEEEECCEEc
Confidence 47999999999964 36899999999 999999999999999999999999997 4 5788642111
Q ss_pred ------------ce-EeccccC------CCcchhhhh-------------------------------ccCCCc------
Q 005892 80 ------------GI-WMARCAG------IEPCTLIMD-------------------------------LEGTDG------ 103 (671)
Q Consensus 80 ------------gi-~~~~~~~------~~~~~~vld-------------------------------~~g~~~------ 103 (671)
.+ ++..... .++..+... ..++..
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred ccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 01 0110000 001111100 001100
Q ss_pred ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 104 RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 104 ~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
.......+.+|+||++||+|++ ++||||||+++||+.. +..+.++|+++.+ +.|||+|||+++.+..+|
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~------~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~ 266 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA------TSKIEDLIEELAE--EYTVVVVTHNMQQAARIS 266 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhc
Confidence 0112234677999999999999 9999999999999999 9999999999865 479999999999988889
Q ss_pred cchh-hhhcCCeEEEecCcccccC
Q 005892 181 LEPV-LREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 181 ~~~~-ll~~~GkI~~~g~~~e~~~ 203 (671)
++++ ++.+ |+++..|++++++.
T Consensus 267 d~i~~~l~~-G~i~~~g~~~~~~~ 289 (305)
T PRK14264 267 DQTAVFLTG-GELVEYDDTDKIFE 289 (305)
T ss_pred CEEEEEecC-CEEEEeCCHHHHHh
Confidence 9865 4566 99999998776653
No 266
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.5e-22 Score=211.02 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=133.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-----CCCeeeccC---
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK--- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~q~~~--- 79 (671)
.+|+++|+++.|+. ..++.++++.+ .+|++++|+|+||||||||+++|+|+. +| ++|++...+
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMV--HEKQVTALIGPSGCGKSTFLRCFNRMH----DLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhccc----CCCCCCCcccEEEEcCccc
Confidence 46999999999964 36999999999 999999999999999999999999998 43 677642110
Q ss_pred --------------ceEe-ccccC------CCcchhhh-------------------hccCCCc------ccccccchHH
Q 005892 80 --------------GIWM-ARCAG------IEPCTLIM-------------------DLEGTDG------RERGEDDTAF 113 (671)
Q Consensus 80 --------------gi~~-~~~~~------~~~~~~vl-------------------d~~g~~~------~~r~~~~~~~ 113 (671)
++.+ ..... .++..+.. +..++.. .......+.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 165 (265)
T PRK14252 86 NILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGG 165 (265)
T ss_pred cccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHH
Confidence 1111 00000 01111111 1111110 0111234567
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
|+||+++|++++ +++|+||||++||+.. +..+.++|.++.+ +.|||+|||+++++...|++++++.+ |
T Consensus 166 ~~qrv~laral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~-G 236 (265)
T PRK14252 166 QQQRLCIARALATDPEILLFDEPTSALDPIA------TASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYM-G 236 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEEC-C
Confidence 999999999999 9999999999999998 9999999999853 68999999999999888999999887 9
Q ss_pred eEEEecCcccccC
Q 005892 191 KIWDSVPKPQAHM 203 (671)
Q Consensus 191 kI~~~g~~~e~~~ 203 (671)
+++..|++++++.
T Consensus 237 ~i~~~g~~~~~~~ 249 (265)
T PRK14252 237 ELIEFGATDTIFI 249 (265)
T ss_pred EEEEeCCHHHHHh
Confidence 9999998776653
No 267
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.8e-22 Score=202.03 Aligned_cols=167 Identities=21% Similarity=0.252 Sum_probs=121.3
Q ss_pred EEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec-cc
Q 005892 10 TQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA-RC 86 (671)
Q Consensus 10 I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~-~~ 86 (671)
|+++|+++.|+... ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.+.+- ..
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i--~~G~~~~i~G~nG~GKSTLl~~i~G~~----~~~~G~i~~~g~i~~~~q~ 74 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEV--PKGELVAIVGPVGSGKSSLLSALLGEL----EKLSGSVSVPGSIAYVSQE 74 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhCcC----CCCCCeEEEcCEEEEEecC
Confidence 57899999996531 125899999999 999999999999999999999999999 8999975433222211 11
Q ss_pred cC------CCcchh-----------hhhccCCC-------------cccccccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 87 AG------IEPCTL-----------IMDLEGTD-------------GRERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 87 ~~------~~~~~~-----------vld~~g~~-------------~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
.. .++..+ ..+..++. ........+.+|+||+++|++++ +++|+|||
T Consensus 75 ~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 75 PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred chhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 00 011100 00000110 01122345778999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHHH-HHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 134 CHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~el-l~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
+++||+.. ...+++. +..+.++ |.|+|++||+++.+.. |++++++.+ |+
T Consensus 155 ~~~LD~~~------~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~~-G~ 204 (204)
T cd03250 155 LSAVDAHV------GRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLDN-GR 204 (204)
T ss_pred cccCCHHH------HHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEeC-CC
Confidence 99999988 8889884 5556554 8999999999988876 888877766 63
No 268
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-22 Score=221.44 Aligned_cols=177 Identities=18% Similarity=0.152 Sum_probs=137.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.++++|++++|.+. -..++.++|+.+ .+||-|+|+|++|||||||++.|.|.. +|++|++...+ ..+.
T Consensus 336 ~l~~~~vsF~y~~~-~~~~L~~~~l~l--~~GEkvAIlG~SGsGKSTllqLl~~~~----~~~~G~i~~~g-~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYPGQ-QTKALKNFNLTL--AQGEKVAILGRSGSGKSTLLQLLAGAW----DPQQGSITLNG-VEIASLDE 407 (573)
T ss_pred eeeeccceeecCCC-ccchhhccceee--cCCCeEEEECCCCCCHHHHHHHHHhcc----CCCCCeeeECC-cChhhCCh
Confidence 58999999999764 457999999999 999999999999999999999999998 89999743221 1110
Q ss_pred -----------cccC------CCc------------chhhhhccCC-----------C--cccccccchHHHHHHHHHHH
Q 005892 85 -----------RCAG------IEP------------CTLIMDLEGT-----------D--GRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 85 -----------~~~~------~~~------------~~~vld~~g~-----------~--~~~r~~~~~~~qrQrv~iAl 122 (671)
.... .+| ..-+++..|+ . -.+.+...+++|+||+++|+
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 408 QALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR 487 (573)
T ss_pred hhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence 0000 000 0111111111 1 12334456788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
++. +++||||||.|||+.. -.++++++..-.+ |+|+|||||++..+. .+|+++++++ |+|+++|++.
T Consensus 488 ~LL~dapl~lLDEPTegLD~~T------E~~vL~ll~~~~~--~kTll~vTHrL~~le-~~drIivl~~-Gkiie~G~~~ 557 (573)
T COG4987 488 ALLHDAPLWLLDEPTEGLDPIT------ERQVLALLFEHAE--GKTLLMVTHRLRGLE-RMDRIIVLDN-GKIIEEGTHA 557 (573)
T ss_pred HHHcCCCeEEecCCcccCChhh------HHHHHHHHHHHhc--CCeEEEEecccccHh-hcCEEEEEEC-CeeeecCCHH
Confidence 999 9999999999999998 8889998887653 899999999998776 4889888888 9999999998
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
++..
T Consensus 558 ~Ll~ 561 (573)
T COG4987 558 ELLA 561 (573)
T ss_pred hhhc
Confidence 8775
No 269
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.6e-23 Score=232.35 Aligned_cols=175 Identities=15% Similarity=0.136 Sum_probs=132.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--ce-Eec
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GI-WMA 84 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--gi-~~~ 84 (671)
.+|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+ .+ ++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i--~~Ge~~~l~G~NGsGKSTLl~~i~G~~----~p~~G~i~~~~~~~i~~~~ 388 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLL--EAGERLAIIGENGVGKTTLLRTLVGEL----EPDSGTVKWSENANIGYYA 388 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCceEEEEEc
Confidence 47999999999964 35899999999 999999999999999999999999998 89999753221 11 111
Q ss_pred ccc--CCCcchh--------------------hhhccCCCc---ccccccchHHHHHHHHHHHHHH---HHHhccccccC
Q 005892 85 RCA--GIEPCTL--------------------IMDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (671)
Q Consensus 85 ~~~--~~~~~~~--------------------vld~~g~~~---~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~ 136 (671)
... ...+... .++..|+.. .......+++|+||++||++++ ++|||||||++
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~ 468 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 110 0000001 111123211 1122445678999999999999 99999999999
Q ss_pred CChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE-EecCccccc
Q 005892 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKPQAH 202 (671)
Q Consensus 137 LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~-~~g~~~e~~ 202 (671)
||+.. +..+.+++.++ +.|||+||||++++...|++++++.+ |+++ ..|++.+++
T Consensus 469 LD~~~------~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~-g~i~~~~g~~~~~~ 524 (530)
T PRK15064 469 MDMES------IESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITP-DGVVDFSGTYEEYL 524 (530)
T ss_pred CCHHH------HHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEcCCCHHHHH
Confidence 99999 99999998886 34999999999999888999999888 9987 677765544
No 270
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.87 E-value=1.9e-22 Score=201.76 Aligned_cols=161 Identities=13% Similarity=0.169 Sum_probs=117.9
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|+. ..++.++++.+ .+|++++|+|+||||||||+++|+|+. +|++|++...+
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTL--AAGEALQVTGPNGSGKTTLLRILAGLS----PPLAGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEecccccHHh
Confidence 578999999964 36899999999 999999999999999999999999999 79999742111
Q ss_pred --ce-EeccccCC-------Ccchh------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccc
Q 005892 80 --GI-WMARCAGI-------EPCTL------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINM 132 (671)
Q Consensus 80 --gi-~~~~~~~~-------~~~~~------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDE 132 (671)
++ ++...... ++..+ .++..|+.. .......+.+|+||+++|+|++ ++||+||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 151 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE 151 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 01 01000000 00000 111112221 1112234567999999999999 9999999
Q ss_pred cccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhh
Q 005892 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (671)
Q Consensus 133 pt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll 186 (671)
||++||+.. +..+.+++.++.++ |.|+|+||||....+..+++.+.+
T Consensus 152 Pt~~LD~~~------~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 152 PTTALDKAG------VARFAEAMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence 999999998 99999999988654 899999999998777666665443
No 271
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.87 E-value=2e-22 Score=204.43 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=120.9
Q ss_pred eEEEEeeeEEeccc---c-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-c---
Q 005892 9 STQLIDGDGTFNVS---G-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-G--- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~---~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-g--- 80 (671)
||+++|+++.|+.. . ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+ |
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~~~g~~~ 74 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTV--NAGECVALSGPSGAGKSTLLKSLYANY----LPDSGRILVRHEGAWV 74 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEEecCCCcc
Confidence 48999999999531 0 136899999999 999999999999999999999999999 78999753211 1
Q ss_pred -----------------e-EeccccCCC-------cchh------------------hhhccCCCc---ccccccchHHH
Q 005892 81 -----------------I-WMARCAGIE-------PCTL------------------IMDLEGTDG---RERGEDDTAFE 114 (671)
Q Consensus 81 -----------------i-~~~~~~~~~-------~~~~------------------vld~~g~~~---~~r~~~~~~~q 114 (671)
+ ++....... +..+ +++..|+.. .......+.+|
T Consensus 75 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 75 DLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE 154 (224)
T ss_pred chhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence 0 000000000 0000 011112221 11223456779
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhh
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll 186 (671)
+||++||+|++ ++||+||||++||+.. +..+.+++.++.++ |+|+|+|||+++.+...|++++.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAAN------RQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999 9999999999999999 99999999998754 899999999998887778776543
No 272
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.87 E-value=1.2e-22 Score=205.87 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=123.7
Q ss_pred EEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 10 TQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
|+++|+++.|+... -..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i--~~G~~~~I~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEI--NPGEIVILTGPSGSGKTTLLTLIGGLR----SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEhHhcCHh
Confidence 78999999996421 146899999999 999999999999999999999999999 79999743211
Q ss_pred -------ceE-eccccC-------CCcchhh-------------------hhccCCCcc--cccccchHHHHHHHHHHHH
Q 005892 80 -------GIW-MARCAG-------IEPCTLI-------------------MDLEGTDGR--ERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 -------gi~-~~~~~~-------~~~~~~v-------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlA 123 (671)
++. +..... .++..+. ++..|+... ......+.+|+||+++|++
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 010 000000 0011111 111122111 1112234569999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
++ ++||+|||+++||+.. +..+.+++.++.++.+.|+|++|||++. ...|++++++.+ |++
T Consensus 156 l~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 156 LVHRPKLVLADEPTAALDSKS------GRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMED-GKL 219 (220)
T ss_pred HhcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEEC-CEE
Confidence 99 9999999999999998 9999999999876558999999999985 467888888877 875
No 273
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-22 Score=223.54 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=136.7
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
++++|+++.|... ..++.++++.+ .+|+.++|+|+||||||||+++|+|+. +|++|++...+
T Consensus 321 i~~~~l~~~y~~g--~~~l~~l~~t~--~~g~~talvG~SGaGKSTLl~lL~G~~----~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 321 ISLENLSFRYPDG--KPALSDLNLTI--KAGQLTALVGASGAGKSTLLNLLLGFL----APTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred eeecceEEecCCC--CcccCCceeEe--cCCcEEEEECCCCCCHHHHHHHHhCcC----CCCCceEEECCccccccCHHH
Confidence 4455999999653 38999999999 999999999999999999999999999 78999842110
Q ss_pred ----ceEeccccC------CCcch------------hhhh----------ccCCCc--ccccccchHHHHHHHHHHHHHH
Q 005892 80 ----GIWMARCAG------IEPCT------------LIMD----------LEGTDG--RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ----gi~~~~~~~------~~~~~------------~vld----------~~g~~~--~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
-.|+...+. .+|.. -+++ ..|++. .+.+...+++|+||+++|||+.
T Consensus 393 ~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll 472 (559)
T COG4988 393 WRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL 472 (559)
T ss_pred HHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc
Confidence 012222211 11111 1111 123331 2344456788999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
+++|+||||++||.++ -..|.+.|.++++ ++|+|+|||++..+.. +|+++++++ |++++.|.++++.
T Consensus 473 ~~~~l~llDEpTA~LD~et------E~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~-G~l~~~g~~~~L~ 542 (559)
T COG4988 473 SPASLLLLDEPTAHLDAET------EQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDN-GRLVEQGTHEELS 542 (559)
T ss_pred CCCCEEEecCCccCCCHhH------HHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecC-CceeccCCHHHHh
Confidence 8999999999999999 8999999999975 5899999999987763 788888888 9999999998876
Q ss_pred CCc
Q 005892 203 MET 205 (671)
Q Consensus 203 ~~~ 205 (671)
++.
T Consensus 543 ~~~ 545 (559)
T COG4988 543 EKQ 545 (559)
T ss_pred hcC
Confidence 543
No 274
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=1.6e-22 Score=239.26 Aligned_cols=181 Identities=21% Similarity=0.173 Sum_probs=140.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-------e
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------I 81 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------i 81 (671)
.|+++|+.++|+.+....++.++++.+ ++|+.|+|+|||||||||++++|.++. +|++|++...+. .
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i--~~G~~valVG~SGsGKST~i~LL~Rfy----dP~~G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKI--PSGQTVALVGPSGSGKSTLIQLLARFY----DPTSGEVLIDGEDIRNLNLK 423 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEe--CCCCEEEEECCCCCCHHHHHHHHHHhc----CCCCceEEEcCccchhcchH
Confidence 599999999997765568999999999 999999999999999999999999999 999998421110 0
Q ss_pred EeccccC-------------CCcch----------------------hhh---hccCCCcccccccchHHHHHHHHHHHH
Q 005892 82 WMARCAG-------------IEPCT----------------------LIM---DLEGTDGRERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 82 ~~~~~~~-------------~~~~~----------------------~vl---d~~g~~~~~r~~~~~~~qrQrv~iAlA 123 (671)
|+....+ .+|+. ++. +-..+...+++-..+++||||++||||
T Consensus 424 ~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred HHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 1111111 00100 111 111222334454567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
|+ +||||||||++||+.+ .+.|.+.|.+.. .|.|.|+|+|++..+.. +|.++++++ |+|++.|+++|
T Consensus 504 lv~~P~ILLLDEaTSaLD~~s------e~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~-G~IvE~G~h~E 573 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAES------ERVVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEE-GKIVEQGTHDE 573 (1228)
T ss_pred HHhCCCEEEecCcccccCHHH------HHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEEC-CEEEEecCHHH
Confidence 99 9999999999999998 888888888875 37899999999998875 888888888 99999999999
Q ss_pred ccCCc
Q 005892 201 AHMET 205 (671)
Q Consensus 201 ~~~~~ 205 (671)
+....
T Consensus 574 Li~~~ 578 (1228)
T KOG0055|consen 574 LIALG 578 (1228)
T ss_pred HHhcc
Confidence 87653
No 275
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.87 E-value=1.5e-22 Score=253.80 Aligned_cols=179 Identities=9% Similarity=0.073 Sum_probs=139.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe----
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM---- 83 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~---- 83 (671)
.+|+++|++|.|++. ...+++++++++ .+|+++||+||||||||||+|+|+|+. .|++|++... |..+
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I--~~GEi~gLLG~NGAGKTTLlkmL~Gll----~ptsG~I~i~-G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGV--RPGECFGLLGVNGAGKTTTFKMLTGDT----TVTSGDATVA-GKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEE--cCCcEEEEECCCCCcHHHHHHHHhCCC----CCCccEEEEC-CEECcchH
Confidence 479999999999642 246999999999 999999999999999999999999999 8999984321 1110
Q ss_pred ----------ccccC-------CCcchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH-
Q 005892 84 ----------ARCAG-------IEPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 84 ----------~~~~~-------~~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~- 125 (671)
..... .++..+. ++..|+.. .......+++||||+.+|+|++
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 00000 0111111 11112211 1112345677999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|+|||||+|||+.. ++.++++|.++.++ |+|||++||+++++..+|++++++.+ |+++..|++.++.
T Consensus 2088 ~P~VLLLDEPTsGLDp~s------r~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~-G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQA------RRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVK-GAFQCLGTIQHLK 2158 (2272)
T ss_pred CCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 9999999999999999 99999999999765 99999999999999999999999998 9999999987753
No 276
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.5e-22 Score=233.36 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=129.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE---ecc
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW---MAR 85 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~---~~~ 85 (671)
||+++|++++|++ ..++.+++|.+ .+|+++||+||||||||||||+|+|+. .|++|++...++.. +..
T Consensus 1 ~i~i~nls~~~g~---~~~l~~vs~~i--~~Ge~v~LvG~NGsGKSTLLkiL~G~~----~pd~G~I~~~~~~~i~~~~q 71 (638)
T PRK10636 1 MIVFSSLQIRRGV---RVLLDNATATI--NPGQKVGLVGKNGCGKSTLLALLKNEI----SADGGSYTFPGNWQLAWVNQ 71 (638)
T ss_pred CEEEEEEEEEeCC---ceeecCcEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEecCCCEEEEEec
Confidence 4899999999965 36899999999 999999999999999999999999998 79999854332211 110
Q ss_pred -ccCC--Ccch------------------------------------------------hhhhccCCCc---ccccccch
Q 005892 86 -CAGI--EPCT------------------------------------------------LIMDLEGTDG---RERGEDDT 111 (671)
Q Consensus 86 -~~~~--~~~~------------------------------------------------~vld~~g~~~---~~r~~~~~ 111 (671)
.... .... .+++..|+.. .......+
T Consensus 72 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 151 (638)
T PRK10636 72 ETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFS 151 (638)
T ss_pred CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcC
Confidence 0000 0000 0011122211 11223456
Q ss_pred HHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 112 ~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
++|+|||+||++|+ ++|||||||++||+.+ +..+.+.|.++ +.|||+||||..++..+|++++++.+
T Consensus 152 gGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~------~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 152 GGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA------VIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHH------HHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 88999999999999 9999999999999998 88888888775 46999999999999888999998888
Q ss_pred CCeEEE-ecCccc
Q 005892 189 IQKIWD-SVPKPQ 200 (671)
Q Consensus 189 ~GkI~~-~g~~~e 200 (671)
|++.. .|+...
T Consensus 222 -G~i~~~~g~~~~ 233 (638)
T PRK10636 222 -QSLFEYTGNYSS 233 (638)
T ss_pred -CEEEEecCCHHH
Confidence 99864 555443
No 277
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.87 E-value=4.4e-22 Score=209.37 Aligned_cols=176 Identities=14% Similarity=0.110 Sum_probs=128.8
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-cc
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-AR 85 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~-~~ 85 (671)
.+.|+++|+++. . ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.+.+ ..
T Consensus 37 ~~~l~i~nls~~--~---~~vL~~vs~~i--~~Ge~~~liG~NGsGKSTLl~~I~Gl~----~p~~G~I~i~g~i~yv~q 105 (282)
T cd03291 37 DNNLFFSNLCLV--G---APVLKNINLKI--EKGEMLAITGSTGSGKTSLLMLILGEL----EPSEGKIKHSGRISFSSQ 105 (282)
T ss_pred CCeEEEEEEEEe--c---ccceeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEEEEeC
Confidence 356999999985 2 35899999999 999999999999999999999999999 799997533221111 11
Q ss_pred c------cCCCcchh-----------hhhccCCCc-------------ccccccchHHHHHHHHHHHHHH---HHHhccc
Q 005892 86 C------AGIEPCTL-----------IMDLEGTDG-------------RERGEDDTAFEKQSALFALAVS---DIVLINM 132 (671)
Q Consensus 86 ~------~~~~~~~~-----------vld~~g~~~-------------~~r~~~~~~~qrQrv~iAlAL~---evLlLDE 132 (671)
. ...++..+ .++..++.. .......+.+|+||++||++++ ++||+||
T Consensus 106 ~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 106 FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred cccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0 00011000 001011110 0011345788999999999999 9999999
Q ss_pred cccCCChhhhhChhHHHHHHHHH-HHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 133 WCHDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 133 pt~~LD~~~~~~~~~~~~v~ell-~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
|+++||+.. +..+++.+ ..+. . +.|||++||++..+. .|++++++.+ |+++..|+++++..
T Consensus 186 Pt~gLD~~~------~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-~~d~i~~l~~-G~i~~~g~~~~~~~ 247 (282)
T cd03291 186 PFGYLDVFT------EKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHE-GSSYFYGTFSELQS 247 (282)
T ss_pred CCccCCHHH------HHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-hCCEEEEEEC-CEEEEECCHHHHHh
Confidence 999999998 88888765 4553 3 789999999998775 6888888877 99999998777653
No 278
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=1.2e-22 Score=214.68 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=142.2
Q ss_pred cceEEEEeeeEEeccc-c-------ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc
Q 005892 7 CCSTQLIDGDGTFNVS-G-------IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT 78 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~-~-------l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~ 78 (671)
.+.++.+++...|.-. + -..+.+++++.. .+|+.+||+|.+|||||||-.+|.+++ ++.|++...
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L--~~gqTlGlVGESGSGKsTlG~allrL~-----~s~G~I~F~ 346 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTL--RRGQTLGLVGESGSGKSTLGLALLRLI-----PSQGEIRFD 346 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEe--cCCCeEEEEecCCCCcchHHHHHHhhc-----CcCceEEEC
Confidence 3579999999999422 1 134778899999 999999999999999999999999999 555863211
Q ss_pred C------------------ceEeccccC-CCc---------------------------chhhhhccCCCccccc---cc
Q 005892 79 K------------------GIWMARCAG-IEP---------------------------CTLIMDLEGTDGRERG---ED 109 (671)
Q Consensus 79 ~------------------gi~~~~~~~-~~~---------------------------~~~vld~~g~~~~~r~---~~ 109 (671)
+ .+.++...+ ..+ ..-.+.-.|+++..+. ..
T Consensus 347 G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE 426 (534)
T COG4172 347 GQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE 426 (534)
T ss_pred CccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcc
Confidence 0 011111111 000 1112223355443322 23
Q ss_pred chHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhh
Q 005892 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (671)
Q Consensus 110 ~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll 186 (671)
-+++||||++||+|++ ++++|||||++||..- +.+|++++++|.+++|.+.+|||||+..+..+|+++++|
T Consensus 427 FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV------QaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm 500 (534)
T COG4172 427 FSGGQRQRIAIARALILKPELILLDEPTSALDRSV------QAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVM 500 (534)
T ss_pred cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH------HHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEE
Confidence 3566999999999999 9999999999999877 999999999999999999999999999999999999999
Q ss_pred hcCCeEEEecCcccccCCc
Q 005892 187 EDIQKIWDSVPKPQAHMET 205 (671)
Q Consensus 187 ~~~GkI~~~g~~~e~~~~~ 205 (671)
.+ |+|++.|+.+++|.++
T Consensus 501 ~~-GkiVE~G~~~~if~~P 518 (534)
T COG4172 501 RD-GKIVEQGPTEAVFANP 518 (534)
T ss_pred eC-CEEeeeCCHHHHhcCC
Confidence 99 9999999999988654
No 279
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.87 E-value=3e-22 Score=226.16 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=127.0
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-CCCeeeccC------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQTTK------ 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-~sG~~q~~~------ 79 (671)
.++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||||+|+|+. +| ++|++...+
T Consensus 258 ~~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~i~G~NGsGKSTLl~~l~G~~----~~~~~G~i~~~g~~~~~~ 328 (490)
T PRK10938 258 EPRIVLNNGVVSYND---RPILHNLSWQV--NPGEHWQIVGPNGAGKSTLLSLITGDH----PQGYSNDLTLFGRRRGSG 328 (490)
T ss_pred CceEEEeceEEEECC---eeEEeeceEEE--cCCCEEEEECCCCCCHHHHHHHHcCCC----CcccCCeEEEecccCCCC
Confidence 357999999999964 35899999999 999999999999999999999999987 44 577632110
Q ss_pred ----------ceEeccccC-C------Ccch-----------------------hhhhccCCCc---ccccccchHHHHH
Q 005892 80 ----------GIWMARCAG-I------EPCT-----------------------LIMDLEGTDG---RERGEDDTAFEKQ 116 (671)
Q Consensus 80 ----------gi~~~~~~~-~------~~~~-----------------------~vld~~g~~~---~~r~~~~~~~qrQ 116 (671)
+...+.... . .+.. ..++..|+.. .......+++|+|
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHH
Confidence 000000000 0 0000 0111122222 1112345677999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccc-cccchhhhhcCCeE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL-ENLEPVLREDIQKI 192 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~-~~~~~~ll~~~GkI 192 (671)
|++||+|++ ++|||||||+|||+.. +..+.++|.++.++.++|||+||||++++.. .|++++++.+ |+|
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~-G~i 481 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLN------RQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPD-GDI 481 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecC-Cce
Confidence 999999999 9999999999999999 9999999999976544679999999998876 4777777777 998
Q ss_pred EEec
Q 005892 193 WDSV 196 (671)
Q Consensus 193 ~~~g 196 (671)
+...
T Consensus 482 ~~~~ 485 (490)
T PRK10938 482 YRYV 485 (490)
T ss_pred EEee
Confidence 7654
No 280
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.87 E-value=1.9e-22 Score=237.52 Aligned_cols=175 Identities=19% Similarity=0.150 Sum_probs=134.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
.|+++|++++|++. ...+++++++.+ .+|+.++|+||||||||||+++|+|+. +|++|++... |..
T Consensus 477 ~I~~~~vsf~y~~~-~~~vL~~isl~i--~~Ge~vaIvG~sGsGKSTLlklL~gl~----~p~~G~I~id-g~~i~~~~~ 548 (710)
T TIGR03796 477 YVELRNITFGYSPL-EPPLIENFSLTL--QPGQRVALVGGSGSGKSTIAKLVAGLY----QPWSGEILFD-GIPREEIPR 548 (710)
T ss_pred eEEEEEEEEecCCC-CCCcccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEEC-CEeHHHCCH
Confidence 59999999999652 357999999999 999999999999999999999999999 8999974321 111
Q ss_pred ---------eccc------cCCCcchh------------hhhcc-----------CCCc--ccccccchHHHHHHHHHHH
Q 005892 83 ---------MARC------AGIEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 83 ---------~~~~------~~~~~~~~------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
+... +..+|+.+ +++.. |++. .+.+...+++||||+++||
T Consensus 549 ~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLAR 628 (710)
T TIGR03796 549 EVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIAR 628 (710)
T ss_pred HHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHH
Confidence 0000 00111111 11111 1111 2334456788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|+. ++|||||||++||+.. .+.+++.+.+ .++|+|+|||+++.+.. ||+++++.+ |+|++.|+.+
T Consensus 629 all~~p~iliLDEptS~LD~~t------e~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~-G~i~~~G~~~ 696 (710)
T TIGR03796 629 ALVRNPSILILDEATSALDPET------EKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLER-GKVVQRGTHE 696 (710)
T ss_pred HHhhCCCEEEEECccccCCHHH------HHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeC-CEEEEecCHH
Confidence 999 9999999999999998 8889888875 37899999999987764 899999888 9999999988
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
++.+
T Consensus 697 ~Ll~ 700 (710)
T TIGR03796 697 ELWA 700 (710)
T ss_pred HHHH
Confidence 8764
No 281
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.87 E-value=1.3e-22 Score=202.92 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=113.8
Q ss_pred EEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-----------
Q 005892 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----------- 80 (671)
Q Consensus 12 i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g----------- 80 (671)
++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~ 71 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTI--EKGKMYAIIGESGSGKSTLLNIIGLLE----KFDSGQVYLNGKETPPLNSKKAS 71 (206)
T ss_pred CcceEEEECC---EEEEeceEEEE--eCCcEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEccccchhhHH
Confidence 4689999964 36899999999 999999999999999999999999999 799997422110
Q ss_pred ------eEe-ccccC-------CCcchh------------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH-
Q 005892 81 ------IWM-ARCAG-------IEPCTL------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 81 ------i~~-~~~~~-------~~~~~~------------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~- 125 (671)
+.+ ..... .++..+ .++..|+.. .......+.+|+||+++|+|++
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred HHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 110 00000 011111 011112211 1111234567999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhh
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~l 185 (671)
++||+||||++||+.. +..+.+++.++.++ |.|+|++||+++.+ ..|+++++
T Consensus 152 ~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~ 205 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKN------RDEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIE 205 (206)
T ss_pred CCCEEEEeCCcCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEe
Confidence 9999999999999999 99999999998764 89999999999865 35766544
No 282
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=2.1e-22 Score=230.72 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=131.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--ce-Eec
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GI-WMA 84 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--gi-~~~ 84 (671)
+||+++|++++|++. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|.+.... .+ ++.
T Consensus 3 ~~i~~~nls~~~~~~--~~il~~is~~i--~~Ge~~~liG~NGsGKSTLl~~i~G~~----~p~~G~i~~~~~~~i~~v~ 74 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK--KEILKDISLSF--FPGAKIGVLGLNGAGKSTLLRIMAGVD----KEFNGEARPAPGIKVGYLP 74 (552)
T ss_pred EEEEEeeEEEecCCC--CeeecCceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEecCCCEEEEEe
Confidence 479999999999621 36899999999 999999999999999999999999998 79999753221 11 111
Q ss_pred cccC-------CCcchhhh------------------------------------------------------hccCCCc
Q 005892 85 RCAG-------IEPCTLIM------------------------------------------------------DLEGTDG 103 (671)
Q Consensus 85 ~~~~-------~~~~~~vl------------------------------------------------------d~~g~~~ 103 (671)
.... .+++.+.+ +..|+..
T Consensus 75 Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 154 (552)
T TIGR03719 75 QEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP 154 (552)
T ss_pred ccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc
Confidence 1111 11111100 0011111
Q ss_pred -ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc
Q 005892 104 -RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (671)
Q Consensus 104 -~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~ 179 (671)
.......+++|+||++||++++ ++|||||||++||+.. +..+.++|.++ +.|||+||||++.+...
T Consensus 155 ~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~------~~~l~~~L~~~----~~tvIiisHd~~~~~~~ 224 (552)
T TIGR03719 155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES------VAWLEQHLQEY----PGTVVAVTHDRYFLDNV 224 (552)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHH------HHHHHHHHHhC----CCeEEEEeCCHHHHHhh
Confidence 1122345688999999999999 9999999999999998 89999998876 24999999999999888
Q ss_pred ccchhhhhcCCeEE-EecCccccc
Q 005892 180 NLEPVLREDIQKIW-DSVPKPQAH 202 (671)
Q Consensus 180 ~~~~~ll~~~GkI~-~~g~~~e~~ 202 (671)
|++++++.+ |+++ ..|+..+..
T Consensus 225 ~d~v~~l~~-g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 225 AGWILELDR-GRGIPWEGNYSSWL 247 (552)
T ss_pred cCeEEEEEC-CEEEEecCCHHHHH
Confidence 999998888 9976 667766544
No 283
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.87 E-value=2.5e-22 Score=231.21 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=135.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
.|+++|+++.|++. ...++.++++.+ .+|+.++|+||||||||||+++|+|+. +|++|++... |..
T Consensus 341 ~i~~~~vsf~y~~~-~~~il~~i~l~i--~~G~~~aIvG~sGsGKSTLl~ll~gl~----~p~~G~I~i~-g~~i~~~~~ 412 (582)
T PRK11176 341 DIEFRNVTFTYPGK-EVPALRNINFKI--PAGKTVALVGRSGSGKSTIANLLTRFY----DIDEGEILLD-GHDLRDYTL 412 (582)
T ss_pred eEEEEEEEEecCCC-CCccccCceEEe--CCCCEEEEECCCCCCHHHHHHHHHhcc----CCCCceEEEC-CEEhhhcCH
Confidence 59999999999652 346999999999 999999999999999999999999999 8999974211 111
Q ss_pred ---------ecccc------CCCcchh-------------hhhcc-----------CCCc--ccccccchHHHHHHHHHH
Q 005892 83 ---------MARCA------GIEPCTL-------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFA 121 (671)
Q Consensus 83 ---------~~~~~------~~~~~~~-------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iA 121 (671)
+.... ..+|..+ +++.. |++. .+.+...+++||||+++|
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492 (582)
T ss_pred HHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHH
Confidence 00000 0111111 01111 1111 123344678999999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
||+. ++||+||||++||+.+ ...+++.+.++.+ ++|+|+|||+++.+. .||+++++.+ |+|++.|+.
T Consensus 493 Rall~~~~ililDEptsaLD~~t------~~~i~~~l~~~~~--~~tvI~VtHr~~~~~-~~D~Ii~l~~-g~i~e~g~~ 562 (582)
T PRK11176 493 RALLRDSPILILDEATSALDTES------ERAIQAALDELQK--NRTSLVIAHRLSTIE-KADEILVVED-GEIVERGTH 562 (582)
T ss_pred HHHHhCCCEEEEECccccCCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEEC-CEEEEeCCH
Confidence 9999 9999999999999998 8899999998853 789999999997765 5899988888 999999998
Q ss_pred ccccCC
Q 005892 199 PQAHME 204 (671)
Q Consensus 199 ~e~~~~ 204 (671)
+++.+.
T Consensus 563 ~~l~~~ 568 (582)
T PRK11176 563 AELLAQ 568 (582)
T ss_pred HHHHhC
Confidence 877643
No 284
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=1.6e-22 Score=229.57 Aligned_cols=174 Identities=11% Similarity=0.177 Sum_probs=132.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++ .++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 267 ~~l~~~~l~~--------~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 267 PVLTVEDLTG--------EGFRNISLEV--RAGEILGLAGVVGAGRTELAETLYGLR----PARGGRIMLNGKEINALST 332 (510)
T ss_pred ceEEEeCCCC--------CCccceeEEE--cCCcEEEEECCCCCCHHHHHHHHcCCC----CCCCcEEEECCEECCCCCH
Confidence 4789999983 1478899999 999999999999999999999999998 79999753211
Q ss_pred ------ceE-ecccc---CC-------Ccch---------------------hhhhccCCC-c--ccccccchHHHHHHH
Q 005892 80 ------GIW-MARCA---GI-------EPCT---------------------LIMDLEGTD-G--RERGEDDTAFEKQSA 118 (671)
Q Consensus 80 ------gi~-~~~~~---~~-------~~~~---------------------~vld~~g~~-~--~~r~~~~~~~qrQrv 118 (671)
++. +.... .. ++.. .++...|+. . .......+++|+||+
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 111 11100 00 0000 001111332 1 112234567899999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||+|++ ++|||||||++||+.. +..+.++|.++.++ |.|||+||||++++...|++++++.+ |+|+..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~-G~i~~~ 484 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSA------RNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQ-GEISGA 484 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEE
Confidence 9999999 9999999999999999 99999999999765 99999999999999989999999988 999999
Q ss_pred cCcccccC
Q 005892 196 VPKPQAHM 203 (671)
Q Consensus 196 g~~~e~~~ 203 (671)
|+++++..
T Consensus 485 ~~~~~~~~ 492 (510)
T PRK15439 485 LTGAAINV 492 (510)
T ss_pred EccccCCH
Confidence 98876653
No 285
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.87 E-value=2.8e-22 Score=235.26 Aligned_cols=175 Identities=19% Similarity=0.164 Sum_probs=134.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.|+++|++++|++. ...+++++++.+ .+|+.++|+||||||||||+|+|+|+. +|++|++... |..+.
T Consensus 451 ~I~~~nvsf~Y~~~-~~~vL~~isl~i--~~Ge~vaIvG~sGsGKSTLlklL~gl~----~p~~G~I~id-g~~i~~~~~ 522 (686)
T TIGR03797 451 AIEVDRVTFRYRPD-GPLILDDVSLQI--EPGEFVAIVGPSGSGKSTLLRLLLGFE----TPESGSVFYD-GQDLAGLDV 522 (686)
T ss_pred eEEEEEEEEEcCCC-CccceeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEEC-CEEcCcCCH
Confidence 59999999999642 357999999999 999999999999999999999999999 8999984211 11110
Q ss_pred -----------cc------cCCCcchh-----------hhhccCCC-----------c--ccccccchHHHHHHHHHHHH
Q 005892 85 -----------RC------AGIEPCTL-----------IMDLEGTD-----------G--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 85 -----------~~------~~~~~~~~-----------vld~~g~~-----------~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.. +..+|..+ +++..|+. . .+.+...+++||||+++|||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARA 602 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602 (686)
T ss_pred HHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 00 00111111 11111211 1 12334567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. ++|||||||++||+.+ .+.+.+.+.++ ++|+|+|||+++.+. .+|+++++.+ |+|++.|+.++
T Consensus 603 ll~~p~iLiLDEpTS~LD~~t------e~~i~~~L~~~----~~T~IiItHr~~~i~-~~D~Iivl~~-G~iv~~G~~~~ 670 (686)
T TIGR03797 603 LVRKPRILLFDEATSALDNRT------QAIVSESLERL----KVTRIVIAHRLSTIR-NADRIYVLDA-GRVVQQGTYDE 670 (686)
T ss_pred HhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHh----CCeEEEEecChHHHH-cCCEEEEEEC-CEEEEECCHHH
Confidence 99 9999999999999998 88899988876 469999999998776 4899999888 99999999887
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
+.+
T Consensus 671 Ll~ 673 (686)
T TIGR03797 671 LMA 673 (686)
T ss_pred HHh
Confidence 764
No 286
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.87 E-value=2.9e-22 Score=203.68 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=117.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------ceE-eccccCC--Ccchhhh----------
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------GIW-MARCAGI--EPCTLIM---------- 96 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------gi~-~~~~~~~--~~~~~vl---------- 96 (671)
.+|++++|+||||||||||+++|+|+. +|++|++...+ .+. +...... .....+.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI----PPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 679999999999999999999999998 79999743211 011 1110000 0000011
Q ss_pred -------------------hccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHH
Q 005892 97 -------------------DLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVF 152 (671)
Q Consensus 97 -------------------d~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ 152 (671)
+..|+.. .......+.+|+||+++|++++ +++|+||||++||+.+ +..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~------~~~l~ 153 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT------QELLT 153 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHH
Confidence 1112211 0111234566999999999999 9999999999999999 99999
Q ss_pred HHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCCccccchh
Q 005892 153 QVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFF 211 (671)
Q Consensus 153 ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~~l~~~f 211 (671)
+++.++.++ |.|+|++|||++.+...|++++++ + |+++..|+++++..+..+.+.|
T Consensus 154 ~~l~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l-~-G~i~~~~~~~~~~~~~~~~~~~ 209 (223)
T TIGR03771 154 ELFIELAGA-GTAILMTTHDLAQAMATCDRVVLL-N-GRVIADGTPQQLQDPAPWMTTF 209 (223)
T ss_pred HHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEE-C-CEEEeecCHHHhcChHHHHHHh
Confidence 999998754 999999999999888889998887 6 9999999988776655555544
No 287
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=7.1e-22 Score=197.37 Aligned_cols=157 Identities=12% Similarity=0.125 Sum_probs=115.3
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 ml~~~~l~~~~~~---~~il~~~s~~i--~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 1 MLDVIELDFDYHD---QPLLQQISFHL--PAGGLLHLKGSNGAGKTTLLKLIAGLL----NPEKGEILFERQSIKKDLCT 71 (200)
T ss_pred CEEEEEEEEEeCC---eeEEeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeeEEECCCccccCHHH
Confidence 4899999999964 36999999999 999999999999999999999999999 79999742111
Q ss_pred ---ce-EeccccCCCcchhhhh--------------------ccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhc
Q 005892 80 ---GI-WMARCAGIEPCTLIMD--------------------LEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLI 130 (671)
Q Consensus 80 ---gi-~~~~~~~~~~~~~vld--------------------~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlL 130 (671)
.+ ++.......+...+.+ ..++.. .......+.+|+||+++|++++ ++||+
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lil 151 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLL 151 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 0100000000011111 112211 0111234667999999999999 99999
Q ss_pred cccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 131 DEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
||||++||+.. +..+.++|.++.+. |.|+|++||+...+.. +|.
T Consensus 152 DEP~~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 152 DEPLVALDELS------LLTIITKIQEHRAK-GGAVLLTSHQDLPLNK-ADY 195 (200)
T ss_pred eCCCcccCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCchhccc-cch
Confidence 99999999998 99999999998654 8999999999987753 444
No 288
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=3.5e-22 Score=226.29 Aligned_cols=172 Identities=13% Similarity=0.179 Sum_probs=130.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++ .++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 256 ~~l~~~~l~~--------~~l~~vsl~i--~~Ge~~~liG~NGsGKSTLl~~l~G~~----~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 256 VRLKVDNLSG--------PGVNDVSFTL--RKGEILGVSGLMGAGRTELMKVLYGAL----PRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred cEEEEeCccc--------CCcccceEEE--cCCcEEEEecCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCCCCH
Confidence 4688888874 2588899999 999999999999999999999999999 79999743211
Q ss_pred ------ce-Eecccc---C-------CCcchh------------------------hhhccCCC-c--ccccccchHHHH
Q 005892 80 ------GI-WMARCA---G-------IEPCTL------------------------IMDLEGTD-G--RERGEDDTAFEK 115 (671)
Q Consensus 80 ------gi-~~~~~~---~-------~~~~~~------------------------vld~~g~~-~--~~r~~~~~~~qr 115 (671)
++ ++.... . .++..+ +++..|+. . .......+++|+
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence 01 111110 0 000000 11112331 1 112234567899
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
||++||+|++ ++|||||||++||+.. +..+.++|.++.++ |.|||+||||++++...|++++++.+ |+|
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~-G~i 473 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGA------KKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHE-GRI 473 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999999765 99999999999999888999999988 999
Q ss_pred EEecCcccc
Q 005892 193 WDSVPKPQA 201 (671)
Q Consensus 193 ~~~g~~~e~ 201 (671)
+..++++++
T Consensus 474 ~~~~~~~~~ 482 (501)
T PRK10762 474 SGEFTREQA 482 (501)
T ss_pred EEEeccccC
Confidence 998887664
No 289
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=4.7e-22 Score=229.54 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=135.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM----- 83 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~----- 83 (671)
.|+++|+++.|++. .+++.++++.+ .+|+.++|+|+||||||||+++|+|+. +|++|++... |..+
T Consensus 340 ~i~~~~v~f~y~~~--~~il~~i~l~i--~~Ge~iaIvG~SGsGKSTLl~lL~gl~----~p~~G~I~id-g~~i~~~~~ 410 (592)
T PRK10790 340 RIDIDNVSFAYRDD--NLVLQNINLSV--PSRGFVALVGHTGSGKSTLASLLMGYY----PLTEGEIRLD-GRPLSSLSH 410 (592)
T ss_pred eEEEEEEEEEeCCC--CceeeceeEEE--cCCCEEEEECCCCCCHHHHHHHHhccc----CCCCceEEEC-CEEhhhCCH
Confidence 49999999999642 46999999999 999999999999999999999999999 8999974211 1111
Q ss_pred ----------ccccC------CCcchh-----------hhhcc-----------CCCc--ccccccchHHHHHHHHHHHH
Q 005892 84 ----------ARCAG------IEPCTL-----------IMDLE-----------GTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 84 ----------~~~~~------~~~~~~-----------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
...+. .+|+.+ +++.. |++. .+.+...+++||||+++|||
T Consensus 411 ~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 411 SVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred HHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 00000 111111 11111 1111 12344567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. ++||+||||++||+.+ .+.+.+.+.++.+ ++|+|+|||++.... .||+++++.+ |+|++.|+.++
T Consensus 491 Ll~~~~illlDEpts~LD~~t------~~~i~~~l~~~~~--~~tvIivtHr~~~l~-~~D~ii~l~~-G~i~~~G~~~~ 560 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGT------EQAIQQALAAVRE--HTTLVVIAHRLSTIV-EADTILVLHR-GQAVEQGTHQQ 560 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEEC-CEEEEEcCHHH
Confidence 99 9999999999999998 8999999998853 689999999997766 4889988887 99999999888
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
+.+
T Consensus 561 L~~ 563 (592)
T PRK10790 561 LLA 563 (592)
T ss_pred HHh
Confidence 764
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.7e-22 Score=226.06 Aligned_cols=173 Identities=17% Similarity=0.216 Sum_probs=130.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.+++.|++. ..+++++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 257 ~l~~~~~~~-------~~~l~~isl~i--~~Ge~~~iiG~NGsGKSTLlk~l~G~~----~p~~G~i~~~g~~~~~~~~~ 323 (501)
T PRK11288 257 RLRLDGLKG-------PGLREPISFSV--RAGEIVGLFGLVGAGRSELMKLLYGAT----RRTAGQVYLDGKPIDIRSPR 323 (501)
T ss_pred EEEEecccc-------CCcccceeEEE--eCCcEEEEEcCCCCCHHHHHHHHcCCC----cCCCceEEECCEECCCCCHH
Confidence 578888862 14788999999 999999999999999999999999999 78999743211
Q ss_pred -----ce-Eecccc---CC-------Ccchh------------------------hhhccCCC-c--ccccccchHHHHH
Q 005892 80 -----GI-WMARCA---GI-------EPCTL------------------------IMDLEGTD-G--RERGEDDTAFEKQ 116 (671)
Q Consensus 80 -----gi-~~~~~~---~~-------~~~~~------------------------vld~~g~~-~--~~r~~~~~~~qrQ 116 (671)
++ ++.... +. ++..+ +++..|+. . .......+++|+|
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence 00 001000 00 00000 01111221 0 1122345677999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|+++|++++ ++|||||||++||+.. +..++++|.++.+. |.|||+||||++++..+|++++++.+ |+++
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~-g~i~ 475 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGA------KHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMRE-GRIA 475 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 99999999999765 99999999999999989999999888 9999
Q ss_pred EecCccccc
Q 005892 194 DSVPKPQAH 202 (671)
Q Consensus 194 ~~g~~~e~~ 202 (671)
..|++++..
T Consensus 476 ~~~~~~~~~ 484 (501)
T PRK11288 476 GELAREQAT 484 (501)
T ss_pred EEEccccCC
Confidence 999876543
No 291
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.86 E-value=8.6e-22 Score=196.36 Aligned_cols=152 Identities=11% Similarity=0.115 Sum_probs=111.4
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTL--NAGEALQVTGPNGIGKTTLLRILAGLL----RPDSGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccchHHh
Confidence 578999999964 36899999999 999999999999999999999999999 79999742111
Q ss_pred --ce-EeccccCC-------Ccchhh--------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhc
Q 005892 80 --GI-WMARCAGI-------EPCTLI--------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLI 130 (671)
Q Consensus 80 --gi-~~~~~~~~-------~~~~~v--------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlL 130 (671)
.+ ++...... ++..+. ++..|+... ......+.+|+||+++|+|++ ++|++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 151 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWIL 151 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 01 11111000 011111 111122111 111234567999999999999 99999
Q ss_pred cccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 131 DEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
||||++||+.. +..+.+++.++.++ |.|+|++||+...+.
T Consensus 152 DEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 152 DEPTTALDKAG------VALLAGLLRAHLAR-GGIVLLTTHQDLGLV 191 (198)
T ss_pred eCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEEEccccccc
Confidence 99999999998 99999999998654 899999999986543
No 292
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.86 E-value=4.7e-22 Score=233.63 Aligned_cols=176 Identities=20% Similarity=0.206 Sum_probs=135.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.|+++|++++|++. ...++.++++.+ .+|+.++|+||||||||||+++|+|+. +|++|++... |+.+.
T Consensus 463 ~I~~~~vsf~Y~~~-~~~vL~~i~l~i--~~G~~iaIvG~sGsGKSTLlklL~gl~----~p~~G~I~id-g~~l~~~~~ 534 (694)
T TIGR03375 463 EIEFRNVSFAYPGQ-ETPALDNVSLTI--RPGEKVAIIGRIGSGKSTLLKLLLGLY----QPTEGSVLLD-GVDIRQIDP 534 (694)
T ss_pred eEEEEEEEEEeCCC-CccceeeeeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEEC-CEEhhhCCH
Confidence 59999999999642 346999999999 999999999999999999999999999 8999974321 11110
Q ss_pred -----------cc------cCCCcchh------------hhhcc-----------CCCc--ccccccchHHHHHHHHHHH
Q 005892 85 -----------RC------AGIEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 85 -----------~~------~~~~~~~~------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
.. +..+|+.+ ..+.. |++. .+++...+++||||+++||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 00 00111110 11111 1111 2334456788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|+. +++||||||++||+.+ .+.+.+.+.++.+ ++|+|+|||+++.+. .||+++++.+ |+|++.|+.+
T Consensus 615 all~~p~iliLDE~Ts~LD~~t------e~~i~~~l~~~~~--~~T~iiItHrl~~~~-~~D~iivl~~-G~i~e~G~~~ 684 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRS------EERFKDRLKRWLA--GKTLVLVTHRTSLLD-LVDRIIVMDN-GRIVADGPKD 684 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEEEeC-CEEEeeCCHH
Confidence 999 9999999999999998 9999999998853 789999999998764 5899998888 9999999987
Q ss_pred ccc
Q 005892 200 QAH 202 (671)
Q Consensus 200 e~~ 202 (671)
++.
T Consensus 685 eLl 687 (694)
T TIGR03375 685 QVL 687 (694)
T ss_pred HHH
Confidence 764
No 293
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.5e-22 Score=225.72 Aligned_cols=173 Identities=10% Similarity=0.110 Sum_probs=131.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.+ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDL--HKGEILGIAGLVGAKRTDIVETLFGIR----EKSAGTITLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEE--eCCcEEEEecCCCCCHHHHHHHHcCCC----cCCccEEEECCEECCCCCH
Confidence 479999999874 24889999999 999999999999999999999999999 89999743211
Q ss_pred ------ce-Eecccc---C-CCcch----hhh--------------------------hccCCC---cccccccchHHHH
Q 005892 80 ------GI-WMARCA---G-IEPCT----LIM--------------------------DLEGTD---GRERGEDDTAFEK 115 (671)
Q Consensus 80 ------gi-~~~~~~---~-~~~~~----~vl--------------------------d~~g~~---~~~r~~~~~~~qr 115 (671)
++ ++.... + ..... .+. +..++. ........+++|+
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 01 010000 0 00000 000 001121 0112234567799
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
||++||++++ ++|||||||+|||+.. +..+++++.++.+. |.|||+||||++++..+|++++++.+ |++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~------~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~-g~i 469 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGA------KFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSN-GLV 469 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhH------HHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999999765 99999999999999889999999888 999
Q ss_pred EEecCcc
Q 005892 193 WDSVPKP 199 (671)
Q Consensus 193 ~~~g~~~ 199 (671)
+..++++
T Consensus 470 ~~~~~~~ 476 (491)
T PRK10982 470 AGIVDTK 476 (491)
T ss_pred EEEEccc
Confidence 9877664
No 294
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=6e-22 Score=227.90 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=136.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
.|+++|+++.|++. ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++... |..
T Consensus 338 ~i~~~~v~f~y~~~-~~~il~~i~~~i--~~G~~~aivG~sGsGKSTL~~ll~g~~----~p~~G~I~i~-g~~i~~~~~ 409 (574)
T PRK11160 338 SLTLNNVSFTYPDQ-PQPVLKGLSLQI--KAGEKVALLGRTGCGKSTLLQLLTRAW----DPQQGEILLN-GQPIADYSE 409 (574)
T ss_pred eEEEEEEEEECCCC-CCcceecceEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEEC-CEEhhhCCH
Confidence 59999999999642 246899999999 999999999999999999999999999 8999974211 111
Q ss_pred ---------eccccC------CCcch------------hhhhccCCCc------------ccccccchHHHHHHHHHHHH
Q 005892 83 ---------MARCAG------IEPCT------------LIMDLEGTDG------------RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 83 ---------~~~~~~------~~~~~------------~vld~~g~~~------------~~r~~~~~~~qrQrv~iAlA 123 (671)
+...+. .+|.. ..++..++.. .+++...+++||||+++|||
T Consensus 410 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARa 489 (574)
T PRK11160 410 AALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489 (574)
T ss_pred HHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHH
Confidence 100000 11111 1111112211 12344567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. ++||+||||++||+.+ .+.+.+.+.++. .++|+|+|+|+++.+. .||+++++.+ |++++.|+.++
T Consensus 490 ll~~~~ililDE~ts~lD~~t------~~~i~~~l~~~~--~~~tviiitHr~~~~~-~~d~i~~l~~-G~i~~~g~~~~ 559 (574)
T PRK11160 490 LLHDAPLLLLDEPTEGLDAET------ERQILELLAEHA--QNKTVLMITHRLTGLE-QFDRICVMDN-GQIIEQGTHQE 559 (574)
T ss_pred HhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHc--CCCEEEEEecChhHHH-hCCEEEEEeC-CeEEEeCCHHH
Confidence 99 9999999999999998 999999999885 3789999999998776 4899988888 99999999877
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
+.+.
T Consensus 560 l~~~ 563 (574)
T PRK11160 560 LLAQ 563 (574)
T ss_pred HHhc
Confidence 6643
No 295
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=6.8e-22 Score=227.23 Aligned_cols=172 Identities=17% Similarity=0.075 Sum_probs=129.8
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE-eccc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-MARC 86 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~-~~~~ 86 (671)
++|++.|+++.|++. .+.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++.....+. +...
T Consensus 339 ~~l~~~~ls~~~~~~----~l~~~s~~i--~~Geiv~l~G~NGsGKSTLlk~L~Gl~----~p~~G~I~~~~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGDF----SLEVEGGEI--YEGEVIGIVGPNGIGKTTFAKLLAGVL----KPDEGEVDPELKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECCE----EEEecceEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEEeeeEEEeccc
Confidence 579999999999542 367889999 999999999999999999999999999 89999753211111 1111
Q ss_pred cC-------CCcchh-------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhh
Q 005892 87 AG-------IEPCTL-------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQ 141 (671)
Q Consensus 87 ~~-------~~~~~~-------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~ 141 (671)
.. .++..+ +++..|+.. .......+++|+|||+||++++ ++|||||||++||+.+
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 11 001100 111122221 1122345778999999999999 9999999999999999
Q ss_pred hhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 142 AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 142 ~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
+..+.++|+++.++.|.|+|+||||++++..+|++++++. |++...|.
T Consensus 489 ------~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~--~~~~~~g~ 536 (590)
T PRK13409 489 ------RLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE--GEPGKHGH 536 (590)
T ss_pred ------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc--Ccceeeee
Confidence 9999999999977668999999999999988898887774 57776665
No 296
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.3e-22 Score=223.11 Aligned_cols=179 Identities=18% Similarity=0.178 Sum_probs=140.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM----- 83 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~----- 83 (671)
.|+++|+++.|.......++++++|.+ ++|++|||+||||+||||+.++|-.+. +|++|++... |+.+
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti--~pGe~vALVGPSGsGKSTiasLL~rfY----~PtsG~IllD-G~~i~~~~~ 537 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTI--RPGEVVALVGPSGSGKSTIASLLLRFY----DPTSGRILLD-GVPISDINH 537 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeee--CCCCEEEEECCCCCCHHHHHHHHHHhc----CCCCCeEEEC-CeehhhcCH
Confidence 599999999997765678999999999 999999999999999999999999999 9999984321 1111
Q ss_pred ---cccc-------------CCCcchh----------------------hhhcc---CCCcccccccchHHHHHHHHHHH
Q 005892 84 ---ARCA-------------GIEPCTL----------------------IMDLE---GTDGRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 84 ---~~~~-------------~~~~~~~----------------------vld~~---g~~~~~r~~~~~~~qrQrv~iAl 122 (671)
+... ..+|+.+ +...+ .+.-.+++-..+++||||++|||
T Consensus 538 ~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 538 KYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 1100 1122222 11111 11223455556788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
||. .||||||.|++||.++ -..|-+.|.++.+ +.|+|+|.|.+..+.. ++.++++++ |++++.|+-+
T Consensus 618 ALlr~P~VLILDEATSALDaeS------E~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~Ivvi~~-G~V~E~G~h~ 687 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAES------EYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQIVVIDK-GRVVEMGTHD 687 (716)
T ss_pred HHhcCCCEEEEechhhhcchhh------HHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccEEEEEcC-CeEEecccHH
Confidence 999 8999999999999998 7888888888754 6899999999988874 778888888 9999999888
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
++++.
T Consensus 688 eLl~~ 692 (716)
T KOG0058|consen 688 ELLSK 692 (716)
T ss_pred HHhhC
Confidence 87654
No 297
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.86 E-value=4e-22 Score=201.43 Aligned_cols=160 Identities=15% Similarity=0.095 Sum_probs=116.5
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE--eccc-------cCCCcchhhhh
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--MARC-------AGIEPCTLIMD 97 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~--~~~~-------~~~~~~~~vld 97 (671)
++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++....+.. +... .+.++..+...
T Consensus 2 vl~~vs~~i--~~Ge~~~l~G~NGsGKSTLlk~i~Gl~----~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~ 75 (213)
T PRK15177 2 VLDKTDFVM--GYHEHIGILAAPGSGKTTLTRLLCGLD----APDEGDFIGLRGDALPLGANSFILPGLTGEENARMMAS 75 (213)
T ss_pred eeeeeeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----cCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHH
Confidence 578899999 999999999999999999999999999 79999753111111 1100 11112222111
Q ss_pred ccCCC---------------c--ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHH
Q 005892 98 LEGTD---------------G--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMR 157 (671)
Q Consensus 98 ~~g~~---------------~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~ 157 (671)
..+.. . .......+.+|+||+++|+|++ +++|+|||++++|+.. +..+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~------~~~~~~~l~~ 149 (213)
T PRK15177 76 LYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT------QLRMQAALAC 149 (213)
T ss_pred HcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH------HHHHHHHHHH
Confidence 11111 1 0111234567999999999999 9999999999999988 8888887765
Q ss_pred hhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 158 LFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 158 L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
..+ +.|+|++||++..+...|++++++.+ |+++..++..+.
T Consensus 150 ~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 190 (213)
T PRK15177 150 QLQ--QKGLIVLTHNPRLIKEHCHAFGVLLH-GKITMCEDLAQA 190 (213)
T ss_pred Hhh--CCcEEEEECCHHHHHHhcCeeEEEEC-CeEEEeCCHHHH
Confidence 433 45799999999988888999999888 999988775543
No 298
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=6.1e-22 Score=248.36 Aligned_cols=178 Identities=12% Similarity=0.132 Sum_probs=137.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+.|+++|++|.|++. ...++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I--~~Gei~aLLG~NGAGKSTLLkiLaGLl----~PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITF--YENQITAFLGHNGAGKTTTLSILTGLL----PPTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEE--cCCcEEEEECCCCChHHHHHHHHhcCC----CCCceEEEECCEECcchHH
Confidence 479999999999531 246899999999 999999999999999999999999999 89999843211
Q ss_pred ------ceEecccc------CCCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH--
Q 005892 80 ------GIWMARCA------GIEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ------gi~~~~~~------~~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
|...+... ..+++.+. ++..|+... ......+++||||+++|+|++
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 00111100 00111111 111222211 122345677999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
++|||||||+|||+.. ++.++++|+++. + |.|||++||+++++..+|++++++.+ |++...|++..+
T Consensus 1080 PkVLLLDEPTSGLDp~s------r~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~-GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1080 AKVVVLDEPTSGVDPYS------RRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQ-GRLYCSGTPLFL 1147 (2272)
T ss_pred CCEEEEECCCcCCCHHH------HHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 9999999999999999 999999999994 4 89999999999999889999999988 999999987654
No 299
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=7.8e-22 Score=227.49 Aligned_cols=176 Identities=15% Similarity=0.167 Sum_probs=133.3
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
.|+++|+++.|.+. ..++.++++.+ .+|+.++|+||||||||||+++|+|+. |++|++... |..
T Consensus 349 ~i~~~~vsf~~~~~--~~vL~~i~l~i--~~G~~vaIvG~SGsGKSTL~~lL~g~~-----p~~G~I~i~-g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSPDG--KTLAGPLNFTL--PAGQRIALVGPSGAGKTSLLNALLGFL-----PYQGSLKIN-GIELRELDP 418 (588)
T ss_pred eEEEEeeEEeccCC--CeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC-----CCCcEEEEC-CEecccCCH
Confidence 49999999866432 46899999999 999999999999999999999999998 678974221 111
Q ss_pred ---------eccc------cCCCcchh------------hhhcc-----------CCC--cccccccchHHHHHHHHHHH
Q 005892 83 ---------MARC------AGIEPCTL------------IMDLE-----------GTD--GRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 83 ---------~~~~------~~~~~~~~------------vld~~-----------g~~--~~~r~~~~~~~qrQrv~iAl 122 (671)
+... +..+|+.+ +++.. |++ -.+++...+++||||++|||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialAR 498 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALAR 498 (588)
T ss_pred HHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 0000 00111111 11111 222 12344456789999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|+. ++|||||||++||+.+ .+.+.+.+.++. .++|+|+|||+++.+. .+|+++++.+ |+|++.|+.+
T Consensus 499 All~~~~IliLDE~TSaLD~~t------e~~i~~~l~~~~--~~~TvIiItHrl~~i~-~aD~Iivl~~-G~i~e~G~~~ 568 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHS------EQLVMQALNAAS--RRQTTLMVTHQLEDLA-QWDQIWVMQD-GQIVQQGDYA 568 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHh--CCCEEEEEecChHHHH-hCCEEEEEeC-CeEeecCCHH
Confidence 999 9999999999999998 899999998885 3789999999997765 4899999888 9999999987
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
++...
T Consensus 569 eL~~~ 573 (588)
T PRK11174 569 ELSQA 573 (588)
T ss_pred HHHhc
Confidence 77643
No 300
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.86 E-value=7.3e-22 Score=232.39 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=131.6
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
.|+++|+++.|++.....+++++++.+ .+|+.++|+||||||||||+|+|+|+. +|++|++... |..
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i--~~Ge~vaIvG~SGsGKSTLl~lL~gl~----~p~~G~I~id-g~~i~~~~~ 550 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTL--HPGEVVALVGPSGSGKSTVAALLQNLY----QPTGGQVLLD-GVPLVQYDH 550 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEE--cCCCEEEEECCCCCCHHHHHHHHHhcc----CCCCCEEEEC-CEEHHhcCH
Confidence 599999999996422346999999999 999999999999999999999999999 8999974221 111
Q ss_pred ---------ecccc------CCCcchh------------hhhcc-----------CCCc--ccccccchHHHHHHHHHHH
Q 005892 83 ---------MARCA------GIEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 83 ---------~~~~~------~~~~~~~------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
+...+ ..+|+.+ +++.. |++. .+.+...+++||||+++||
T Consensus 551 ~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 551 HYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630 (711)
T ss_pred HHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHH
Confidence 00000 0111111 11111 1111 2233456788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|+. +++|+||||++||+.. .+.+.+ ... ..++|+|+|||+++.+. .+|+++++.+ |+|++.|+++
T Consensus 631 ALl~~p~ILILDEpTSaLD~~t------e~~i~~-~~~---~~~~TvIiItHrl~~i~-~aD~IivL~~-G~ive~Gt~~ 698 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAEC------EQLLQE-SRS---RASRTVLLIAHRLSTVE-RADQILVLKK-GSVVEMGTHK 698 (711)
T ss_pred HHhcCCCEEEEEccccccCHHH------HHHHHH-hhc---cCCCeEEEEeccHHHHH-hCCEEEEEEC-CEEEEeeCHH
Confidence 999 9999999999999987 777777 222 24789999999998765 4899999888 9999999988
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
++.+.
T Consensus 699 eL~~~ 703 (711)
T TIGR00958 699 QLMED 703 (711)
T ss_pred HHHhC
Confidence 87643
No 301
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=5.7e-22 Score=190.22 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=141.6
Q ss_pred cceEEEEeeeEEeccc------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc
Q 005892 7 CCSTQLIDGDGTFNVS------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG 80 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g 80 (671)
++.+++.|++|.|... ...++.+.|+|.. ..|+.+||+|.||||||||.++|+|+. .|++|++...+.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL--~~~QTlaiIG~NGSGKSTLakMlaGmi----~PTsG~il~n~~ 75 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTL--REGQTLAIIGENGSGKSTLAKMLAGMI----EPTSGEILINDH 75 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEe--cCCcEEEEEccCCCcHhHHHHHHhccc----CCCCceEEECCc
Confidence 4579999999999532 1346788899999 999999999999999999999999999 899998432211
Q ss_pred -------------eE--ec-cccCCCc---chhhhh-----------------------ccCCCcccc---cccchHHHH
Q 005892 81 -------------IW--MA-RCAGIEP---CTLIMD-----------------------LEGTDGRER---GEDDTAFEK 115 (671)
Q Consensus 81 -------------i~--~~-~~~~~~~---~~~vld-----------------------~~g~~~~~r---~~~~~~~qr 115 (671)
|. ++ ......+ +..++| ..|+.+... .......|+
T Consensus 76 ~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 76 PLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred cccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence 11 11 1111111 111111 112221110 111223499
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
|||++|+||. +++|.||...+||..- +.++.+++.+|..+.|++.|+|+++++.+..++|.+++|++ |++
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~sm------rsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~E-G~v 228 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSM------RSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHE-GEV 228 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHH------HHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEec-Cce
Confidence 9999999999 9999999999999877 99999999999988999999999999999999999999998 999
Q ss_pred EEecCcccccCCc
Q 005892 193 WDSVPKPQAHMET 205 (671)
Q Consensus 193 ~~~g~~~e~~~~~ 205 (671)
++.|++.+++.++
T Consensus 229 vE~G~t~~v~a~P 241 (267)
T COG4167 229 VERGSTADVLASP 241 (267)
T ss_pred eecCChhhhhcCC
Confidence 9999999988653
No 302
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=8.3e-22 Score=189.23 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=118.3
Q ss_pred EEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCc
Q 005892 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP 91 (671)
Q Consensus 12 i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~ 91 (671)
++++++.|... .++.++++.+ .+|++++|+||||||||||+++|+|+. +|..|++ .+.+......
T Consensus 2 ~~~~~~~~~~~---~~l~~~~~~i--~~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i------~~~~~~~~~~ 66 (157)
T cd00267 2 IENLSFRYGGR---TALDNVSLTL--KAGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEI------LIDGKDIAKL 66 (157)
T ss_pred eEEEEEEeCCe---eeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEE------EECCEEcccC
Confidence 67899999542 6899999999 999999999999999999999999999 7888963 3332110000
Q ss_pred -chhhhhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEE
Q 005892 92 -CTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM 167 (671)
Q Consensus 92 -~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl 167 (671)
........+.- ...+.+|+||+.+|++++ +++++|||+++||+.. +..+.+.+.++... +.|+|
T Consensus 67 ~~~~~~~~i~~~-----~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~------~~~l~~~l~~~~~~-~~tii 134 (157)
T cd00267 67 PLEELRRRIGYV-----PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS------RERLLELLRELAEE-GRTVI 134 (157)
T ss_pred CHHHHHhceEEE-----eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEE
Confidence 00000000000 015788999999999999 9999999999999998 99999999998765 79999
Q ss_pred EEecCCCcccccccchhhhhcCCe
Q 005892 168 FVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 168 ~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
++||+++.+...|++++++.+ |+
T Consensus 135 ~~sh~~~~~~~~~d~i~~l~~-g~ 157 (157)
T cd00267 135 IVTHDPELAELAADRVIVLKD-GK 157 (157)
T ss_pred EEeCCHHHHHHhCCEEEEEeC-cC
Confidence 999999998887888877766 53
No 303
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.85 E-value=1.1e-21 Score=225.53 Aligned_cols=177 Identities=19% Similarity=0.217 Sum_probs=137.6
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecc---
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR--- 85 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~--- 85 (671)
.|+++|+++.|++ ...+++++++.+ .+|+.+||+||+|||||||+|.|+|+. +|++|++.. .|+.+..
T Consensus 328 ~I~f~~vsf~y~~--~~~vl~~is~~i--~~Ge~vaiVG~sGsGKSTl~~LL~r~~----~~~~G~I~i-dg~dI~~i~~ 398 (567)
T COG1132 328 SIEFENVSFSYPG--KKPVLKDISFSI--EPGEKVAIVGPSGSGKSTLIKLLLRLY----DPTSGEILI-DGIDIRDISL 398 (567)
T ss_pred eEEEEEEEEEcCC--CCccccCceEEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CCCCCeEEE-CCEehhhcCH
Confidence 4999999999964 247999999999 999999999999999999999999999 899998432 1211110
Q ss_pred ------------------ccCCCcch----------------------hhhhcc-CCC--cccccccchHHHHHHHHHHH
Q 005892 86 ------------------CAGIEPCT----------------------LIMDLE-GTD--GRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 86 ------------------~~~~~~~~----------------------~vld~~-g~~--~~~r~~~~~~~qrQrv~iAl 122 (671)
.+..+|+. ++...+ |++ -.+++...+++||||++|||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred HHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH
Confidence 00000100 111111 222 12345566889999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|+. ++|+|||||++||+.+ ...+.+.+.++.+ +.|+|+|+|.+..+.. ||+++++.+ |+|++.|+++
T Consensus 479 all~~~~ILILDEaTSalD~~t------E~~I~~~l~~l~~--~rT~iiIaHRlsti~~-aD~IiVl~~-G~i~e~G~h~ 548 (567)
T COG1132 479 ALLRNPPILILDEATSALDTET------EALIQDALKKLLK--GRTTLIIAHRLSTIKN-ADRIIVLDN-GRIVERGTHE 548 (567)
T ss_pred HHhcCCCEEEEeccccccCHHh------HHHHHHHHHHHhc--CCEEEEEeccHhHHHh-CCEEEEEEC-CEEEEecCHH
Confidence 999 9999999999999998 8899999988763 5688889999977765 899999988 9999999999
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
++...
T Consensus 549 eLl~~ 553 (567)
T COG1132 549 ELLAK 553 (567)
T ss_pred HHHHc
Confidence 88754
No 304
>PLN03073 ABC transporter F family; Provisional
Probab=99.85 E-value=1.1e-21 Score=229.50 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=129.5
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc----eEe
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----IWM 83 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g----i~~ 83 (671)
++|+++|+++.|++. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++..... ...
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i--~~Ge~i~LvG~NGsGKSTLLk~L~Gll----~p~~G~I~~~~~~~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGI--DLDSRIAMVGPNGIGKSTILKLISGEL----QPSSGTVFRSAKVRMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCCceEEECCceeEEEEe
Confidence 579999999999532 35899999999 999999999999999999999999999 899997532111 111
Q ss_pred ccc-c---CCCcch----------------hhhhccCCCc---ccccccchHHHHHHHHHHHHHH---HHHhccccccCC
Q 005892 84 ARC-A---GIEPCT----------------LIMDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (671)
Q Consensus 84 ~~~-~---~~~~~~----------------~vld~~g~~~---~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~L 137 (671)
+.. . ...+.. .++...|+.. .......+++|+||++||++++ ++|||||||++|
T Consensus 579 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L 658 (718)
T PLN03073 579 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658 (718)
T ss_pred ccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 110 0 000100 0122223331 1223456788999999999999 999999999999
Q ss_pred ChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE-EecCcc
Q 005892 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKP 199 (671)
Q Consensus 138 D~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~-~~g~~~ 199 (671)
|+.+ +..+.+.+.+. . | |||+||||+.++...|++++++.+ |+++ ..|++.
T Consensus 659 D~~s------~~~l~~~L~~~--~-g-tvIivSHd~~~i~~~~drv~~l~~-G~i~~~~g~~~ 710 (718)
T PLN03073 659 DLDA------VEALIQGLVLF--Q-G-GVLMVSHDEHLISGSVDELWVVSE-GKVTPFHGTFH 710 (718)
T ss_pred CHHH------HHHHHHHHHHc--C-C-EEEEEECCHHHHHHhCCEEEEEEC-CEEEEeCCCHH
Confidence 9998 88888877764 2 4 999999999999888999998887 9987 556543
No 305
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=6.3e-22 Score=201.00 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=130.5
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecccc-----------------
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA----------------- 87 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~----------------- 87 (671)
-.+..++++.. ..-.|+||+|++|||||||+|+|+|+. +|+.|++...+..+.....
T Consensus 11 G~~~l~a~~~~--p~~GvTAlFG~SGsGKTslin~IaGL~----rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQD 84 (352)
T COG4148 11 GNFALDANFTL--PARGITALFGPSGSGKTSLINMIAGLT----RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQD 84 (352)
T ss_pred CceEEEEeccC--CCCceEEEecCCCCChhhHHHHHhccC----CccccEEEECCEEeecccCCcccChhhheeeeEeec
Confidence 34556677776 444799999999999999999999999 9999985322222211100
Q ss_pred --------CCCcchh------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhh
Q 005892 88 --------GIEPCTL------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQA 142 (671)
Q Consensus 88 --------~~~~~~~------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~ 142 (671)
...|..+ +.+..|+..- .+....+++|||||+|++||. ++|+||||.+.||...
T Consensus 85 ARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R- 163 (352)
T COG4148 85 ARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR- 163 (352)
T ss_pred cccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch-
Confidence 0111111 1222233221 122345677999999999999 9999999999999887
Q ss_pred hChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCCcccc
Q 005892 143 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLS 208 (671)
Q Consensus 143 ~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~~l~ 208 (671)
+.+++-.+.+|+++.++-|++|||.++++.++++++++|.+ |++.+.|+.++++....+.
T Consensus 164 -----K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~-GkV~A~g~~e~v~~~~~~~ 223 (352)
T COG4148 164 -----KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLEN-GKVKASGPLEEVWGSPDFP 223 (352)
T ss_pred -----hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecC-CeEEecCcHHHHhcCcccC
Confidence 99999999999999999999999999999999999999998 9999999999988765443
No 306
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=9.9e-22 Score=225.28 Aligned_cols=171 Identities=14% Similarity=0.126 Sum_probs=129.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc----eEe
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----IWM 83 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g----i~~ 83 (671)
++|++.|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++..... ...
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLl~~i~G~~----~p~~G~i~~~~~~~i~~v~ 393 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSL--PPGGIVGIIGPNGAGKSTLFKMITGQE----QPDSGTIKIGETVKLAYVD 393 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCceEEEEEe
Confidence 47999999999964 36899999999 999999999999999999999999999 899998543211 111
Q ss_pred ccccCC-------Ccchh----------------hhhccCCCc---ccccccchHHHHHHHHHHHHHH---HHHhccccc
Q 005892 84 ARCAGI-------EPCTL----------------IMDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (671)
Q Consensus 84 ~~~~~~-------~~~~~----------------vld~~g~~~---~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt 134 (671)
+..... ++..+ .++..|+.. .......+++|+||++||++++ ++|||||||
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 111010 01100 112223321 1123455788999999999999 999999999
Q ss_pred cCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE-EecC
Q 005892 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVP 197 (671)
Q Consensus 135 ~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~-~~g~ 197 (671)
++||+.. +..+.++|.++. | |||+||||++++...|++++++.+.|++. ..|+
T Consensus 474 ~~LD~~~------~~~l~~~l~~~~---~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 474 NDLDVET------LRALEEALLEFP---G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred CCCCHHH------HHHHHHHHHhCC---C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCC
Confidence 9999999 999999999872 4 79999999999988899988887546765 3444
No 307
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=1.3e-21 Score=223.70 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=133.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|+++.|++. ...++.++++.+ .+|+.++|+||||||||||+++|+|+. +|++|++...+
T Consensus 316 ~i~~~~v~~~y~~~-~~~~l~~~~~~i--~~G~~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 316 HLSVENVTIVPPGG-KKPTLRGISFRL--QAGEALAIIGPSGSGKSTLARLIVGIW----PPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEehhhCCHH
Confidence 59999999999542 246899999999 999999999999999999999999999 89999742111
Q ss_pred ----ce-Eecccc------CCCcchh------------hhhcc-----------CCCc--ccccccchHHHHHHHHHHHH
Q 005892 80 ----GI-WMARCA------GIEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ----gi-~~~~~~------~~~~~~~------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.+ ++.... ..+|... .++.. |++. .+.+...+++||||+++|+|
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 00 000000 0111110 00100 1111 12334567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. ++||+||||++||+.. ...+.+.+.++.. .|.|+|++||+++.+. .||+++++.+ |++++.|++++
T Consensus 469 ll~~~~ililDEpts~LD~~~------~~~i~~~l~~~~~-~~~tvi~ith~~~~~~-~~d~i~~l~~-G~i~~~g~~~~ 539 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEG------EQALANAIKALKA-RGITVVVITHRPSLLG-CVDKILVLQD-GRIARFGERDE 539 (544)
T ss_pred HhcCCCEEEEeCCccccCHHH------HHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEEC-CEEEeeCCHHH
Confidence 99 9999999999999998 9999999998854 3889999999998654 6899888888 99999998766
Q ss_pred cc
Q 005892 201 AH 202 (671)
Q Consensus 201 ~~ 202 (671)
+.
T Consensus 540 l~ 541 (544)
T TIGR01842 540 VL 541 (544)
T ss_pred Hh
Confidence 43
No 308
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=8.3e-22 Score=203.47 Aligned_cols=141 Identities=18% Similarity=0.131 Sum_probs=104.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-ceE-eccccC-------CCcch--------------h
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIW-MARCAG-------IEPCT--------------L 94 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-gi~-~~~~~~-------~~~~~--------------~ 94 (671)
.+|++++|+|||||||||||++|+|+. +|++|++...+ .+. +..... .++.. .
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~----~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVL----KPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC----cCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 579999999999999999999999999 89999753221 111 111110 00000 0
Q ss_pred hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEE
Q 005892 95 IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFV 169 (671)
Q Consensus 95 vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~V 169 (671)
+++..|+... ......+++|+||++||+|++ +++|+||||++||+.. +..+.++|+++.++.|+|||+|
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiiiv 172 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ------RLMASKVIRRFAENNEKTAFVV 172 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEE
Confidence 1111222211 112345677999999999999 9999999999999999 9999999999976568999999
Q ss_pred ecCCCcccccccchhhhhc
Q 005892 170 IRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 170 tHDl~~~~~~~~~~~ll~~ 188 (671)
|||++.+..+|++++++..
T Consensus 173 sHd~~~~~~~~d~i~~l~~ 191 (246)
T cd03237 173 EHDIIMIDYLADRLIVFEG 191 (246)
T ss_pred eCCHHHHHHhCCEEEEEcC
Confidence 9999998888999888755
No 309
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.9e-22 Score=188.74 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=136.3
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeec---------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~--------- 77 (671)
.|.+++.++++.|++. .-..+++|.. .+||+++|+|.+||||||||++|+|-+ .|++|++..
T Consensus 4 ~PLL~V~~lsk~Yg~~---~gc~~vsF~l--~PGeVLgiVGESGSGKtTLL~~is~rl----~p~~G~v~Y~~r~~~~~d 74 (258)
T COG4107 4 KPLLSVSGLSKLYGPG---KGCRDVSFDL--YPGEVLGIVGESGSGKTTLLKCISGRL----TPDAGTVTYRMRDGQPRD 74 (258)
T ss_pred CcceeehhhhhhhCCC---cCccccceee--cCCcEEEEEecCCCcHHhHHHHHhccc----CCCCCeEEEEcCCCCchh
Confidence 4689999999999764 6778899999 999999999999999999999999988 799997310
Q ss_pred ---------------cCceEecc-------------ccCCCcchh---------------hhhccCCCcc---cccccch
Q 005892 78 ---------------TKGIWMAR-------------CAGIEPCTL---------------IMDLEGTDGR---ERGEDDT 111 (671)
Q Consensus 78 ---------------~~gi~~~~-------------~~~~~~~~~---------------vld~~g~~~~---~r~~~~~ 111 (671)
.-|+.-+. ..+ +..+- .+....++.. ......+
T Consensus 75 l~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiG-ERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFS 153 (258)
T COG4107 75 LYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIG-ERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFS 153 (258)
T ss_pred HhhhchHHHHHHhhhccceeecCccccceeeeccCCccc-hhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccc
Confidence 00000000 000 00000 0000000000 0111234
Q ss_pred HHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 112 ~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
++|+||+.||+.+. .++++||||.|||..- +..++++++.|..+.|.++++||||+..+..++++..+|.+
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSV------QARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~ 227 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ 227 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhh------HHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecC
Confidence 66999999999999 9999999999999877 89999999999988999999999999999888999999888
Q ss_pred CCeEEEecCcccccCC
Q 005892 189 IQKIWDSVPKPQAHME 204 (671)
Q Consensus 189 ~GkI~~~g~~~e~~~~ 204 (671)
|++++.|-.+.++.+
T Consensus 228 -g~vve~GLTDrvLDD 242 (258)
T COG4107 228 -GQVVESGLTDRVLDD 242 (258)
T ss_pred -CCEeccccccccccC
Confidence 999999988777644
No 310
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=8.7e-22 Score=193.68 Aligned_cols=178 Identities=18% Similarity=0.214 Sum_probs=134.3
Q ss_pred eEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc
Q 005892 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~ 86 (671)
||.+.|+.+.|.... ...++.++++.+ ..|++|.|+|.||||||||+|+|+|-+ .|++|++... ++-+...
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I--~~g~FvtViGsNGAGKSTlln~iaG~l----~~t~G~I~Id-g~dVtk~ 73 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEI--AEGDFVTVIGSNGAGKSTLLNAIAGDL----KPTSGQILID-GVDVTKK 73 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceee--cCCceEEEEcCCCccHHHHHHHhhCcc----ccCCceEEEC-ceecccC
Confidence 578899999995422 457999999999 999999999999999999999999999 8999984211 1111100
Q ss_pred c-----------------C-------CCcchhhhhcc----CCC-----------------------cc--cccccchHH
Q 005892 87 A-----------------G-------IEPCTLIMDLE----GTD-----------------------GR--ERGEDDTAF 113 (671)
Q Consensus 87 ~-----------------~-------~~~~~~vld~~----g~~-----------------------~~--~r~~~~~~~ 113 (671)
+ + .+|.. +.+.. |+. .+ .+.+..+++
T Consensus 74 ~~~~RA~~larVfQdp~~gt~~~lTieENl~-la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGG 152 (263)
T COG1101 74 SVAKRANLLARVFQDPLAGTAPELTIEENLA-LAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGG 152 (263)
T ss_pred CHHHHhhHHHHHhcchhhCCcccccHHHHHH-HHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccch
Confidence 0 0 01111 11111 111 11 111223456
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
|||.+.+++|.. ++|+|||-|++|||.. ...|+++-.++.++.+.|.+||||+|+.+..+..+.++++. |
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkt------a~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~-G 225 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKT------AEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHS-G 225 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcch------HHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeC-C
Confidence 999999999999 9999999999999998 88999998888888899999999999999888888888877 9
Q ss_pred eEEEecCcccc
Q 005892 191 KIWDSVPKPQA 201 (671)
Q Consensus 191 kI~~~g~~~e~ 201 (671)
+|+.+...++-
T Consensus 226 ~IvlDv~g~~k 236 (263)
T COG1101 226 KIVLDVTGEEK 236 (263)
T ss_pred eEEEEcccccc
Confidence 99998776654
No 311
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.85 E-value=1.4e-21 Score=223.98 Aligned_cols=167 Identities=13% Similarity=0.156 Sum_probs=127.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----ceEe
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----GIWM 83 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----gi~~ 83 (671)
++|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++.... +...
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i--~~Ge~~~l~G~NGsGKSTLl~~l~G~~----~p~~G~i~~~~~~~i~~v~ 391 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKL--PPGGIVGVIGPNGAGKSTLFRMITGQE----QPDSGTIKIGETVKLAYVD 391 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEE--cCCCEEEEECCCCCCHHHHHHHHcCCC----CCCCeEEEECCceEEEEEe
Confidence 47999999999964 36899999999 999999999999999999999999999 79999753211 1111
Q ss_pred ccccCC-------Ccch----------------hhhhccCCCc---ccccccchHHHHHHHHHHHHHH---HHHhccccc
Q 005892 84 ARCAGI-------EPCT----------------LIMDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (671)
Q Consensus 84 ~~~~~~-------~~~~----------------~vld~~g~~~---~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt 134 (671)
+..... ++.. .+++..|+.. .......+++|+||++||++++ ++|||||||
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 111000 0110 0122223321 1223455788999999999999 999999999
Q ss_pred cCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 135 ~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
++||+.. +..+.++|.++. + |||+||||++++..+|++++++.+.|++.
T Consensus 472 ~~LD~~~------~~~l~~~l~~~~---~-~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 472 NDLDVET------LRALEEALLEFA---G-CAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred CCCCHHH------HHHHHHHHHHCC---C-eEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 9999999 999999999872 4 79999999999988899988887645765
No 312
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.85 E-value=1.2e-21 Score=230.64 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=133.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
.|+++|++++|+.. ..++.++++.+ .+|+.++|+||||||||||+++|+|+. +|++|++... |..
T Consensus 473 ~I~~~~vsf~y~~~--~~iL~~isl~i--~~G~~vaIvG~SGsGKSTLlklL~gl~----~p~~G~I~id-g~~i~~~~~ 543 (708)
T TIGR01193 473 DIVINDVSYSYGYG--SNILSDISLTI--KMNSKTTIVGMSGSGKSTLAKLLVGFF----QARSGEILLN-GFSLKDIDR 543 (708)
T ss_pred cEEEEEEEEEcCCC--CcceeceeEEE--CCCCEEEEECCCCCCHHHHHHHHhccC----CCCCcEEEEC-CEEHHHcCH
Confidence 59999999999632 47999999999 999999999999999999999999999 8999984221 111
Q ss_pred ---------ecccc------CCCcchh-------------hhhcc-----------CCCc--ccccccchHHHHHHHHHH
Q 005892 83 ---------MARCA------GIEPCTL-------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFA 121 (671)
Q Consensus 83 ---------~~~~~------~~~~~~~-------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iA 121 (671)
+...+ ..+|+.+ ..+.. |++. .+.+...+++||||+++|
T Consensus 544 ~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialA 623 (708)
T TIGR01193 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA 623 (708)
T ss_pred HHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHH
Confidence 00000 0111111 11111 1111 223444678899999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
||+. ++|||||||++||+.. .+.+.+.+.++ .|+|+|+|||+++.+. .+|+++++.+ |++++.|+.
T Consensus 624 Rall~~p~iliLDE~Ts~LD~~t------e~~i~~~L~~~---~~~T~IiitHr~~~~~-~~D~i~~l~~-G~i~~~G~~ 692 (708)
T TIGR01193 624 RALLTDSKVLILDESTSNLDTIT------EKKIVNNLLNL---QDKTIIFVAHRLSVAK-QSDKIIVLDH-GKIIEQGSH 692 (708)
T ss_pred HHHhhCCCEEEEeCccccCCHHH------HHHHHHHHHHh---cCCEEEEEecchHHHH-cCCEEEEEEC-CEEEEECCH
Confidence 9999 9999999999999998 88999999875 2789999999998764 5899988888 999999998
Q ss_pred ccccC
Q 005892 199 PQAHM 203 (671)
Q Consensus 199 ~e~~~ 203 (671)
+++.+
T Consensus 693 ~~L~~ 697 (708)
T TIGR01193 693 DELLD 697 (708)
T ss_pred HHHHh
Confidence 87754
No 313
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=7.2e-22 Score=204.98 Aligned_cols=165 Identities=14% Similarity=0.068 Sum_probs=119.0
Q ss_pred EeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeee----------ccCceE
Q 005892 13 IDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------TTKGIW 82 (671)
Q Consensus 13 ~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q----------~~~gi~ 82 (671)
.+++++|+.. ..+++++++ + .+|++++|+||||||||||||+|+|+. +|++|++. ...+..
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i--~~Ge~~~IvG~nGsGKSTLlk~l~Gl~----~p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-P--REGQVLGLVGPNGIGKSTALKILAGKL----KPNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred cCcceeecCc--chhhhcCCC-C--CCCCEEEEECCCCCCHHHHHHHHhCCc----CCCCceEeeccccchhhhhccCch
Confidence 4688999542 257888884 6 899999999999999999999999999 89999862 011110
Q ss_pred ec-----------------cccCCCcc-------------------hhhhhccCCCc--ccccccchHHHHHHHHHHHHH
Q 005892 83 MA-----------------RCAGIEPC-------------------TLIMDLEGTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 83 ~~-----------------~~~~~~~~-------------------~~vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
+. ......+. .-+++..|+.. .......+.+|+||+.+|+++
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 154 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAAL 154 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 00 00000000 00111122221 112233466799999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+ +++|+||||++||+.. +..+.+++.++.++ |.|||++|||++.+...|++++++ + |++.+.
T Consensus 155 ~~~p~illlDEPts~LD~~~------~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l-~-~~~~~~ 219 (255)
T cd03236 155 ARDADFYFFDEPSSYLDIKQ------RLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCL-Y-GEPGAY 219 (255)
T ss_pred HhCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEE-C-CCCCcc
Confidence 9 9999999999999998 99999999999764 899999999999888778888777 4 666543
No 314
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.85 E-value=1.7e-21 Score=224.63 Aligned_cols=176 Identities=20% Similarity=0.199 Sum_probs=133.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
.|+++|+++.|++. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++... |..
T Consensus 334 ~i~~~~v~~~y~~~--~~~l~~i~~~i--~~G~~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~-g~~~~~~~~ 404 (585)
T TIGR01192 334 AVEFRHITFEFANS--SQGVFDVSFEA--KAGQTVAIVGPTGAGKTTLINLLQRVY----DPTVGQILID-GIDINTVTR 404 (585)
T ss_pred eEEEEEEEEECCCC--CccccceeEEE--cCCCEEEEECCCCCCHHHHHHHHccCC----CCCCCEEEEC-CEEhhhCCH
Confidence 59999999999642 35899999999 999999999999999999999999999 8999974211 110
Q ss_pred ---------eccccC------CCcchh----------------------hhhc-cCCCc--ccccccchHHHHHHHHHHH
Q 005892 83 ---------MARCAG------IEPCTL----------------------IMDL-EGTDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 83 ---------~~~~~~------~~~~~~----------------------vld~-~g~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
+..... .++..+ +... .|++. .+.+...+++|+||+++|+
T Consensus 405 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 110000 011100 0000 01111 1233445788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++||+||||++||+.. .+.+.+.+.++. + +.|+|+|||+++.+. .||+++++.+ |++++.|+.+
T Consensus 485 all~~p~ililDEpts~LD~~~------~~~i~~~l~~~~-~-~~tvI~isH~~~~~~-~~d~i~~l~~-G~i~~~g~~~ 554 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVET------EARVKNAIDALR-K-NRTTFIIAHRLSTVR-NADLVLFLDQ-GRLIEKGSFQ 554 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHh-C-CCEEEEEEcChHHHH-cCCEEEEEEC-CEEEEECCHH
Confidence 999 9999999999999998 999999998874 3 899999999998875 4899988888 9999999877
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
+..+
T Consensus 555 ~l~~ 558 (585)
T TIGR01192 555 ELIQ 558 (585)
T ss_pred HHHH
Confidence 6653
No 315
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=3.7e-21 Score=191.42 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=110.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
||.++|++++|+.. .+ .++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 ~l~~~~l~~~~~~~---~l-~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQK---NL-FDLSITF--LPSAITYIKGANGCGKSSLLRMIAGIM----QPSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred CeEEEEeeEEECCc---EE-EEEEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCcccChhhhh
Confidence 48899999999542 34 4599999 999999999999999999999999999 799997432210
Q ss_pred -e-EeccccC-------CCcchh-------------hhhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 81 -I-WMARCAG-------IEPCTL-------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 81 -i-~~~~~~~-------~~~~~~-------------vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
+ ++..... .++..+ +++..++.. .......+.+|+||+++|+|++ +++|+|||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0 1111000 011100 011112211 1122334677999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccc
Q 005892 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~ 178 (671)
+++||+.. +..+.+++.++.+ .|.|+|++||+.+.+..
T Consensus 151 ~~~LD~~~------~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 151 ETNLSKEN------RDLLNNLIVMKAN-SGGIVLLSSHLESSIKS 188 (195)
T ss_pred cccCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCCccccch
Confidence 99999998 9999999986654 48999999999988763
No 316
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.85 E-value=1.4e-21 Score=225.41 Aligned_cols=176 Identities=20% Similarity=0.220 Sum_probs=133.3
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|+++.|++. ..++.++++.+ .+|++++|+|+||||||||+++|+|+. +|++|.+...+
T Consensus 334 ~I~~~~vsf~y~~~--~~iL~~inl~i--~~G~~v~IvG~sGsGKSTLl~lL~gl~----~p~~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 334 AVEFDDVSFSYDNS--RQGVEDVSFEA--KPGQTVAIVGPTGAGKSTLINLLQRVF----DPQSGRILIDGTDIRTVTRA 405 (588)
T ss_pred eEEEEEEEEEeCCC--CceecceeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEECCEEhhhCCHH
Confidence 59999999999642 46899999999 999999999999999999999999999 89999742111
Q ss_pred ----ce-EeccccC------CCcchh------------hhhcc-----------CCCc--ccccccchHHHHHHHHHHHH
Q 005892 80 ----GI-WMARCAG------IEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ----gi-~~~~~~~------~~~~~~------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.+ ++...+. .+|..+ .++.. |++. .+.+...+++|+||+++|||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred HHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 00 0110000 111111 11111 1221 12333467889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. +++|+||||++||+.. .+.+++.+.++. .++|+|+|||++..+. .+|+++++.+ |++.+.|+.++
T Consensus 486 ll~~~~iliLDEpts~LD~~t------~~~i~~~l~~~~--~~~tvIiitHr~~~~~-~~D~ii~l~~-G~i~~~g~~~~ 555 (588)
T PRK13657 486 LLKDPPILILDEATSALDVET------EAKVKAALDELM--KGRTTFIIAHRLSTVR-NADRILVFDN-GRVVESGSFDE 555 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHh--cCCEEEEEEecHHHHH-hCCEEEEEEC-CEEEEeCCHHH
Confidence 99 9999999999999998 899999998874 3799999999997765 5899988888 99999998776
Q ss_pred cc
Q 005892 201 AH 202 (671)
Q Consensus 201 ~~ 202 (671)
+.
T Consensus 556 l~ 557 (588)
T PRK13657 556 LV 557 (588)
T ss_pred HH
Confidence 64
No 317
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=1.8e-21 Score=228.71 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=135.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM----- 83 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~----- 83 (671)
.|+++|++++|++. ...++.++++.+ .+|+.++|+|+||||||||+|+|+|+. +|++|++... |..+
T Consensus 455 ~i~~~~vsf~y~~~-~~~il~~i~l~i--~~G~~vaivG~sGsGKSTL~~ll~g~~----~p~~G~I~id-g~~i~~~~~ 526 (694)
T TIGR01846 455 AITFENIRFRYAPD-SPEVLSNLNLDI--KPGEFIGIVGPSGSGKSTLTKLLQRLY----TPQHGQVLVD-GVDLAIADP 526 (694)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEEC-CEehhhCCH
Confidence 59999999999642 246899999999 999999999999999999999999999 8999974211 1111
Q ss_pred ----------ccccC------CCcchh------------hhhcc-----------CCCc--ccccccchHHHHHHHHHHH
Q 005892 84 ----------ARCAG------IEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 84 ----------~~~~~------~~~~~~------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
..... .+|..+ .++.. |++. .+.+...+++|+||+++|+
T Consensus 527 ~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 00000 011100 01111 2211 1233456788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++||+||||++||+.+ .+.+.+.+.++. .+.|+|+|||+++.+. .||+++++.+ |+|++.|+.+
T Consensus 607 all~~~~ililDEpts~LD~~~------~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~ii~l~~-G~i~~~g~~~ 676 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYES------EALIMRNMREIC--RGRTVIIIAHRLSTVR-ACDRIIVLEK-GQIAESGRHE 676 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHH------HHHHHHHHHHHh--CCCEEEEEeCChHHHH-hCCEEEEEeC-CEEEEeCCHH
Confidence 999 9999999999999999 999999999984 3789999999998776 4899988888 9999999988
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
++.+
T Consensus 677 ~l~~ 680 (694)
T TIGR01846 677 ELLA 680 (694)
T ss_pred HHHH
Confidence 7754
No 318
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=1.9e-21 Score=223.52 Aligned_cols=178 Identities=16% Similarity=0.135 Sum_probs=134.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|++++|+.. ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 313 ~I~~~~v~~~y~~~-~~~~l~~i~~~i--~~G~~~~ivG~sGsGKSTLl~ll~g~~----~p~~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTYPQT-DHPALENVNFTL--KPGQMLGICGPTGSGKSTLLSLIQRHF----DVSEGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEECCCC-CCccccCeeEEE--CCCCEEEEECCCCCCHHHHHHHHhccc----CCCCCEEEECCEEHhhCCHH
Confidence 48999999999642 246899999999 999999999999999999999999999 89999742110
Q ss_pred ----ce-Eecccc------CCCcch------------hhhhccCC-----------Cc--ccccccchHHHHHHHHHHHH
Q 005892 80 ----GI-WMARCA------GIEPCT------------LIMDLEGT-----------DG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ----gi-~~~~~~------~~~~~~------------~vld~~g~-----------~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.+ ++...+ ..+|.. ..++..++ +. .+.+...+++|+||+++|+|
T Consensus 386 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARa 465 (569)
T PRK10789 386 SWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465 (569)
T ss_pred HHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 00 000000 011110 01111111 11 12234467889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ +++|+||||++||+.. ...+.+.+.++. .|.|+|+|||+++... .+|+++++.+ |+++..|+.++
T Consensus 466 ll~~~~illlDEpts~LD~~~------~~~i~~~l~~~~--~~~tii~itH~~~~~~-~~d~i~~l~~-G~i~~~g~~~~ 535 (569)
T PRK10789 466 LLLNAEILILDDALSAVDGRT------EHQILHNLRQWG--EGRTVIISAHRLSALT-EASEILVMQH-GHIAQRGNHDQ 535 (569)
T ss_pred HhcCCCEEEEECccccCCHHH------HHHHHHHHHHHh--CCCEEEEEecchhHHH-cCCEEEEEeC-CEEEEecCHHH
Confidence 99 9999999999999998 999999999874 3899999999998765 4888888887 99999999877
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
+.+
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 654
No 319
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.85 E-value=3.1e-21 Score=217.47 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=131.4
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecc-
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR- 85 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~- 85 (671)
|++|++.|+++.|+. ..++.++++.+ .+|+.+||||+||||||||||+|+|.. .|++|++...++..+..
T Consensus 1 m~~i~~~~ls~~~g~---~~l~~~~~l~~--~~G~riGLvG~NGaGKSTLLkilaG~~----~~~~G~i~~~~~~~v~~l 71 (530)
T COG0488 1 MSMITLENLSLAYGD---RPLLENVSLTL--NPGERIGLVGRNGAGKSTLLKILAGEL----EPDSGEVTRPKGLRVGYL 71 (530)
T ss_pred CceEEEeeeEEeeCC---ceeecCCccee--CCCCEEEEECCCCCCHHHHHHHHcCCC----cCCCCeEeecCCceEEEe
Confidence 468999999999954 48999999999 999999999999999999999999999 89999876655433321
Q ss_pred --ccCCCcc-------------------------------------------------------hhhhhccCCCcc-ccc
Q 005892 86 --CAGIEPC-------------------------------------------------------TLIMDLEGTDGR-ERG 107 (671)
Q Consensus 86 --~~~~~~~-------------------------------------------------------~~vld~~g~~~~-~r~ 107 (671)
....... ..++.-.|++.. ...
T Consensus 72 ~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~ 151 (530)
T COG0488 72 SQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPV 151 (530)
T ss_pred CCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCch
Confidence 1111110 001111122221 222
Q ss_pred ccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchh
Q 005892 108 EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ 184 (671)
...+++||.||++|++|. |+|||||||+.||..+ ..-+-+.|.+. .| |+|+||||-.+....|.+++
T Consensus 152 ~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~------i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 152 SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLES------IEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH------HHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheE
Confidence 456788999999999999 9999999999999998 88888887764 36 99999999999998888888
Q ss_pred hhhcCCeEEE-ecC
Q 005892 185 LREDIQKIWD-SVP 197 (671)
Q Consensus 185 ll~~~GkI~~-~g~ 197 (671)
-+.. |++.. .|.
T Consensus 222 ~ld~-g~l~~y~Gn 234 (530)
T COG0488 222 ELDR-GKLTPYKGN 234 (530)
T ss_pred EecC-CceeEecCC
Confidence 8887 87754 443
No 320
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.85 E-value=2.6e-21 Score=195.69 Aligned_cols=163 Identities=19% Similarity=0.205 Sum_probs=117.3
Q ss_pred EEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----------
Q 005892 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----------- 79 (671)
Q Consensus 11 ~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----------- 79 (671)
++.|+.+.|+.. ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRI--PTGQLTMIVGQVGCGKSSLLLAILGEM----QTLEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhccC----CCCCCeEEECCccccccccccc
Confidence 678999999653 46899999999 999999999999999999999999999 78999743211
Q ss_pred ------ceEe-ccccC------CCcchh-----------hhhccCCCc-------------ccccccchHHHHHHHHHHH
Q 005892 80 ------GIWM-ARCAG------IEPCTL-----------IMDLEGTDG-------------RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ------gi~~-~~~~~------~~~~~~-----------vld~~g~~~-------------~~r~~~~~~~qrQrv~iAl 122 (671)
++.+ ..... .++..+ +.+..++.. .......+.+|+||++||+
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred chhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 1110 10000 000000 001111110 0112345678999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHH--HHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQ--VMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~e--ll~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
+++ ++||+||||++||+.. +..+++ ++..+.+ .|.|+|++||+++.+. .|++++++.+ |
T Consensus 154 al~~~p~illlDEPt~~LD~~~------~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~-~~d~i~~l~~-G 217 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHL------SDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP-HADWIIAMKD-G 217 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHH------HHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh-hCCEEEEecC-C
Confidence 999 9999999999999998 888888 5555544 5899999999998875 5888777765 5
No 321
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.85 E-value=2.1e-21 Score=223.00 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=134.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
.|+++|++++|.+. ...++.++++.+ .+|+.++|+|+||||||||+++|+|+. +|++|++...+.
T Consensus 330 ~i~~~~v~f~y~~~-~~~il~~inl~i--~~G~~v~IvG~sGsGKSTLl~lL~gl~----~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-DRPALDSISLVI--EPGETVALVGRSGSGKSTLVNLIPRFY----EPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred eEEEEEEEEEcCCC-CCccccCeeEEe--cCCCEEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEECCEeHHhcCHH
Confidence 49999999999643 246899999999 999999999999999999999999999 899997421110
Q ss_pred -----e-EeccccC------CCcch-------------hhhhccC-----------CCc--ccccccchHHHHHHHHHHH
Q 005892 81 -----I-WMARCAG------IEPCT-------------LIMDLEG-----------TDG--RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 81 -----i-~~~~~~~------~~~~~-------------~vld~~g-----------~~~--~~r~~~~~~~qrQrv~iAl 122 (671)
+ ++...+. .+|.. .+++..| ++. .+.+...+++||||+++||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 0 0000000 01111 0111111 111 1223346789999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
+++ ++++|||||++||+.. .+.+++.|.++. .++|+|+|||+..... .||+++++.+ |+++..|+.+
T Consensus 483 all~~~~illLDEpts~LD~~~------~~~i~~~L~~~~--~~~tiIiitH~~~~~~-~~D~ii~l~~-g~i~~~g~~~ 552 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNES------ERLVQAALERLM--QGRTTLVIAHRLSTIE-KADRIVVMDD-GRIVERGTHN 552 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHh--CCCEEEEEehhhHHHH-hCCEEEEEeC-CEEEeeCCHH
Confidence 999 9999999999999998 999999999885 3789999999997765 5899998887 9999999988
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
++.+
T Consensus 553 ~l~~ 556 (571)
T TIGR02203 553 ELLA 556 (571)
T ss_pred HHHH
Confidence 7653
No 322
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.84 E-value=2.9e-21 Score=224.57 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=126.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--e-Eec
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--I-WMA 84 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g--i-~~~ 84 (671)
.+|+++|+++.|++ ..++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++..... + ++.
T Consensus 318 ~~l~~~~l~~~~~~---~~il~~vsl~i--~~Ge~~~l~G~NGsGKSTLlk~l~G~~----~p~~G~i~~~~~~~i~y~~ 388 (635)
T PRK11147 318 IVFEMENVNYQIDG---KQLVKDFSAQV--QRGDKIALIGPNGCGKTTLLKLMLGQL----QADSGRIHCGTKLEVAYFD 388 (635)
T ss_pred ceEEEeeeEEEECC---eEEEcCcEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEECCCcEEEEEe
Confidence 47999999999964 36899999999 999999999999999999999999998 799998543111 1 111
Q ss_pred cc-cCCCcchhhhh-----------------------ccCCCc---ccccccchHHHHHHHHHHHHHH---HHHhccccc
Q 005892 85 RC-AGIEPCTLIMD-----------------------LEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (671)
Q Consensus 85 ~~-~~~~~~~~vld-----------------------~~g~~~---~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt 134 (671)
.. ....+...+.+ ..++.. .......+++|+||++||++++ ++|||||||
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11 01111001111 112211 1122345678999999999999 999999999
Q ss_pred cCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 135 ~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
++||+.+ +..+.+++.++ +.|||+||||..++..+|++++++.+.|+|...
T Consensus 469 ~~LD~~~------~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 469 NDLDVET------LELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred CCCCHHH------HHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 9999998 88888888775 349999999999998889999888733887643
No 323
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.2e-21 Score=212.21 Aligned_cols=175 Identities=18% Similarity=0.162 Sum_probs=136.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.|++.|+++.|+++ .+++++++|.+ ++|+-|||+|+|||||||+||+|+++. + .+|++... |+.+.
T Consensus 351 ~I~F~dV~f~y~~k--~~iL~gvsf~I--~kGekVaIvG~nGsGKSTilr~LlrF~----d-~sG~I~Id-G~dik~~~~ 420 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK--RKVLKGVSFTI--PKGEKVAIVGSNGSGKSTILRLLLRFF----D-YSGSILID-GQDIKEVSL 420 (591)
T ss_pred cEEEEeeEEEeCCC--CceecceeEEe--cCCCEEEEECCCCCCHHHHHHHHHHHh----c-cCCcEEEC-CeeHhhhCh
Confidence 59999999999764 56999999999 999999999999999999999999998 6 88974211 11110
Q ss_pred -----------cccCCCc------------------chhhhhccCC-------------CcccccccchHHHHHHHHHHH
Q 005892 85 -----------RCAGIEP------------------CTLIMDLEGT-------------DGRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 85 -----------~~~~~~~------------------~~~vld~~g~-------------~~~~r~~~~~~~qrQrv~iAl 122 (671)
......+ ..-.....|+ .-.+++...+++|||||++||
T Consensus 421 ~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 0000000 0000000111 123455566788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|+. +++++||||++||..+ -.++++.+++.. .+.|+|+|-|+++.+.. ||+++++.+ |++...|+..
T Consensus 501 a~lKda~Il~~DEaTS~LD~~T------E~~i~~~i~~~~--~~rTvI~IvH~l~ll~~-~DkI~~l~n-G~v~e~gth~ 570 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSET------EREILDMIMDVM--SGRTVIMIVHRLDLLKD-FDKIIVLDN-GTVKEYGTHS 570 (591)
T ss_pred HHhcCCCeEEecCcccccchhh------HHHHHHHHHHhc--CCCeEEEEEecchhHhc-CCEEEEEEC-CeeEEeccHH
Confidence 999 9999999999999998 889999998843 48999999999998884 899999988 9999999988
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
+++.
T Consensus 571 ell~ 574 (591)
T KOG0057|consen 571 ELLA 574 (591)
T ss_pred HHhh
Confidence 8765
No 324
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=6.8e-22 Score=191.66 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=140.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE-----
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW----- 82 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~----- 82 (671)
+.+.+.|++.+|++- .++.+++|.+ .+|+.-+|||||||||||+|-+|.|.. +|+.|+....+..-
T Consensus 4 ~iL~~~~vsVsF~GF---~Aln~ls~~v--~~Gelr~lIGpNGAGKTT~mD~ItGKt----rp~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSFGGF---KALNDLSFSV--DPGELRVLIGPNGAGKTTLMDVITGKT----RPQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEEcce---eeeeeeEEEe--cCCeEEEEECCCCCCceeeeeeecccC----CCCcceEEEcCchhhccCC
Confidence 579999999999663 7889999999 999999999999999999999999999 89999843222111
Q ss_pred ------------eccccCC------Ccchhh--------------------------hhccCCCccc--ccccchHHHHH
Q 005892 83 ------------MARCAGI------EPCTLI--------------------------MDLEGTDGRE--RGEDDTAFEKQ 116 (671)
Q Consensus 83 ------------~~~~~~~------~~~~~v--------------------------ld~~g~~~~~--r~~~~~~~qrQ 116 (671)
++....+ +|..+. +...|+.... .....+.+|+|
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 1110011 111111 0111111110 00112234999
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
++-|++-++ ++|++|||++|+-... ....-++++++.. +.+|++|.|||+++..+++++.+++. |.+.
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~E------t~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~-G~VL 225 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAE------TEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHE-GSVL 225 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHH------HHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEec-ccee
Confidence 999999999 9999999999997766 7888999999964 68999999999999999999999999 9999
Q ss_pred EecCcccccCCccccchh
Q 005892 194 DSVPKPQAHMETPLSEFF 211 (671)
Q Consensus 194 ~~g~~~e~~~~~~l~~~f 211 (671)
.+|+.+++..++.+.+.|
T Consensus 226 ~EGsld~v~~dp~ViEvY 243 (249)
T COG4674 226 AEGSLDEVQNDPKVIEVY 243 (249)
T ss_pred ecccHHHhhcCcceEeee
Confidence 999999998887766554
No 325
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.84 E-value=3.4e-21 Score=221.57 Aligned_cols=179 Identities=17% Similarity=0.174 Sum_probs=134.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|++++|+......++.++++.+ .+|+.++|+||||||||||+++|+|+. +|++|++...+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i--~~Ge~i~IvG~sGsGKSTLlklL~gl~----~p~~G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTV--RPGETVALVGPSGAGKSTLFQLLLRFY----DPQSGRILLDGVDLRQLDPA 410 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEe--cCCCEEEEECCCCCCHHHHHHHHHhcc----CCCCCEEEECCEEHHhcCHH
Confidence 599999999996421246899999999 999999999999999999999999999 89999742111
Q ss_pred ----ce-Eecccc------CCCcchh------------hhhcc-----------CCCc--ccccccchHHHHHHHHHHHH
Q 005892 80 ----GI-WMARCA------GIEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ----gi-~~~~~~------~~~~~~~------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.+ ++...+ ..+|..+ .++.. |++. .+.+...+++|+||+++|||
T Consensus 411 ~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRa 490 (576)
T TIGR02204 411 ELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490 (576)
T ss_pred HHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHH
Confidence 00 000000 0111111 11111 1111 12333467889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. +++|+||||++||+.. .+.+++.+.++. + ++|+|+|||+++... .+|+++.+.+ |++++.|++++
T Consensus 491 l~~~~~ililDEpts~lD~~~------~~~i~~~l~~~~-~-~~t~IiitH~~~~~~-~~d~vi~l~~-g~~~~~g~~~~ 560 (576)
T TIGR02204 491 ILKDAPILLLDEATSALDAES------EQLVQQALETLM-K-GRTTLIIAHRLATVL-KADRIVVMDQ-GRIVAQGTHAE 560 (576)
T ss_pred HHhCCCeEEEeCcccccCHHH------HHHHHHHHHHHh-C-CCEEEEEecchHHHH-hCCEEEEEEC-CEEEeeecHHH
Confidence 99 9999999999999998 889999999985 3 799999999997765 5888888888 99999999776
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
..+
T Consensus 561 l~~ 563 (576)
T TIGR02204 561 LIA 563 (576)
T ss_pred HHH
Confidence 543
No 326
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.84 E-value=1e-20 Score=220.29 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=134.6
Q ss_pred ceEEEEeeeEEeccc-cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 8 CSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~-~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
++|+++|+++.|+.. +...+++++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i--~~Ge~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~i~~~~ 76 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDI--YAGEMVAIVGASGSGKSTLMNILGCLD----KPTSGTYRVAGQDVATLD 76 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEcCcCC
Confidence 579999999999531 1236899999999 999999999999999999999999999 89999732110
Q ss_pred ----------ce-EeccccCC-------Ccchhhhh------------------ccCCCcc--cccccchHHHHHHHHHH
Q 005892 80 ----------GI-WMARCAGI-------EPCTLIMD------------------LEGTDGR--ERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 ----------gi-~~~~~~~~-------~~~~~vld------------------~~g~~~~--~r~~~~~~~qrQrv~iA 121 (671)
.+ +....... ++..+... ..|+... ......+.+|+||+.+|
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 77 ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence 11 01100000 01111000 1111110 11123456699999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
++++ ++||+|||+++||+.. ++.+.+++.++.++ |.|+|++||+++.+. .|++++++.+ |++...|++
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s------~~~l~~ll~~l~~~-g~tilivsH~~~~~~-~~d~i~~l~~-G~i~~~g~~ 227 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHS------GEEVMAILHQLRDR-GHTVIIVTHDPQVAA-QAERVIEIRD-GEIVRNPPA 227 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEECCCHHHHH-hCCEEEEEEC-CEEEeecCc
Confidence 9999 9999999999999999 99999999998754 999999999998775 5888888888 999999998
Q ss_pred cccc
Q 005892 199 PQAH 202 (671)
Q Consensus 199 ~e~~ 202 (671)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8765
No 327
>PLN03211 ABC transporter G-25; Provisional
Probab=99.84 E-value=3e-21 Score=224.53 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=122.5
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC--CCeeeccCc---------e-Eeccc------
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF--KGRSQTTKG---------I-WMARC------ 86 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~--sG~~q~~~g---------i-~~~~~------ 86 (671)
..+++++++.+ .+|+++||+||||||||||||+|+|.. +|. +|++...+. + ++...
T Consensus 81 ~~iL~~vs~~i--~~Ge~~aI~GpnGaGKSTLL~iLaG~~----~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 81 RTILNGVTGMA--SPGEILAVLGPSGSGKSTLLNALAGRI----QGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPH 154 (659)
T ss_pred CeeeeCCEEEE--ECCEEEEEECCCCCCHHHHHHHHhCCC----CCCceeEEEEECCEECchhhccceEEECcccccCCc
Confidence 36999999999 999999999999999999999999998 564 686321110 0 00000
Q ss_pred -cCCCcchh---------------------hhhccCCCcc-------cccccchHHHHHHHHHHHHHH---HHHhccccc
Q 005892 87 -AGIEPCTL---------------------IMDLEGTDGR-------ERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (671)
Q Consensus 87 -~~~~~~~~---------------------vld~~g~~~~-------~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt 134 (671)
...++..+ +++..|+... ......+++||||+.||++++ ++|++||||
T Consensus 155 lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPt 234 (659)
T PLN03211 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234 (659)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence 00111111 1112233211 112235788999999999999 999999999
Q ss_pred cCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC-cccccccchhhhhcCCeEEEecCcccc
Q 005892 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 135 ~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~-~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+|||+.. ...+.++++++.++ |.|||+++|+++ .+...+|+++++.+ |+++..|+++++
T Consensus 235 sgLD~~~------~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~~~ 294 (659)
T PLN03211 235 SGLDATA------AYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGSDA 294 (659)
T ss_pred CCcCHHH------HHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHHHH
Confidence 9999999 99999999999764 999999999997 57778999999988 999999987664
No 328
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.83 E-value=6.9e-21 Score=188.53 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=100.9
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------------ceE-ecccc-
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------------GIW-MARCA- 87 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------------gi~-~~~~~- 87 (671)
..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+ ++. +....
T Consensus 5 ~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 5 PEVLKGLNFAA--ERGEVLALLGANGAGKSTLLLHLNGLL----RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred cceecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceeEEECCEEccccccchHHHHhhEEEEecChh
Confidence 35889999999 999999999999999999999999999 79999743111 010 01000
Q ss_pred --C-----CCcchhh------------------hhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccCC
Q 005892 88 --G-----IEPCTLI------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (671)
Q Consensus 88 --~-----~~~~~~v------------------ld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~L 137 (671)
. .++..+. ++..|+.. .......+.+|+||+++|+|++ ++||+||||++|
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 79 DQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 0 0000000 01112211 1111234567999999999999 999999999999
Q ss_pred ChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcc
Q 005892 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 138 D~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
|+.. ++.+.++|.++.++ |+|||+||||++++
T Consensus 159 D~~~------~~~~~~~l~~~~~~-~~tili~sH~~~~~ 190 (190)
T TIGR01166 159 DPAG------REQMLAILRRLRAE-GMTVVISTHDVDLA 190 (190)
T ss_pred CHHH------HHHHHHHHHHHHHc-CCEEEEEeeccccC
Confidence 9999 99999999998764 89999999998753
No 329
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.83 E-value=8.6e-21 Score=217.15 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=127.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.|+++|++++|++. ..++.++++.+ .+|+.++|+||||||||||+++|+|+. +|++|++... |..+.
T Consensus 322 ~i~~~~v~f~y~~~--~~~l~~i~~~i--~~G~~~aivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~-g~~~~~~~~ 392 (547)
T PRK10522 322 TLELRNVTFAYQDN--GFSVGPINLTI--KRGELLFLIGGNGSGKSTLAMLLTGLY----QPQSGEILLD-GKPVTAEQP 392 (547)
T ss_pred eEEEEEEEEEeCCC--CeEEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEEC-CEECCCCCH
Confidence 59999999999642 36899999999 999999999999999999999999999 8999974211 11110
Q ss_pred -----------cccC------CCc--------chhhhhccCCCcc----c---ccccchHHHHHHHHHHHHHH---HHHh
Q 005892 85 -----------RCAG------IEP--------CTLIMDLEGTDGR----E---RGEDDTAFEKQSALFALAVS---DIVL 129 (671)
Q Consensus 85 -----------~~~~------~~~--------~~~vld~~g~~~~----~---r~~~~~~~qrQrv~iAlAL~---evLl 129 (671)
.... .++ ..-..+..++... . .+...+++|+||+++|+|++ ++||
T Consensus 393 ~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ili 472 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILL 472 (547)
T ss_pred HHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 0000 011 0001111222211 0 13456789999999999999 9999
Q ss_pred ccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 130 LDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||||++||+.. .+.+.+.+.++.+..+.|+|+|||+++... .||+++++.+ |++++.
T Consensus 473 lDE~ts~LD~~~------~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~-G~i~e~ 530 (547)
T PRK10522 473 LDEWAADQDPHF------RREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRN-GQLSEL 530 (547)
T ss_pred EECCCCCCCHHH------HHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEEC-CEEEEe
Confidence 999999999998 888888887664434899999999996654 6889888887 999865
No 330
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=7.7e-21 Score=186.54 Aligned_cols=150 Identities=13% Similarity=0.052 Sum_probs=108.7
Q ss_pred ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-ccc-cCCCcchhhhhccCC
Q 005892 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-ARC-AGIEPCTLIMDLEGT 101 (671)
Q Consensus 24 l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~-~~~-~~~~~~~~vld~~g~ 101 (671)
...++.++++.+ .+|++++|+||||||||||||+|++ ++|++...+.... ... ..+....-.++..++
T Consensus 7 ~~~~l~~isl~i--~~G~~~~l~G~nG~GKSTLl~~il~--------~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L 76 (176)
T cd03238 7 NVHNLQNLDVSI--PLNVLVVVTGVSGSGKSTLVNEGLY--------ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGL 76 (176)
T ss_pred eeeeecceEEEE--cCCCEEEEECCCCCCHHHHHHHHhh--------cCCcEEECCcccccccccEEEEhHHHHHHHcCC
Confidence 357889999999 9999999999999999999999853 3454311100000 000 000000123444454
Q ss_pred Cc---ccccccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 005892 102 DG---RERGEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (671)
Q Consensus 102 ~~---~~r~~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl 173 (671)
.. .......+.+|+||+++|++++ +++|+|||+++||+.. +..+.+.+.++.+ .|.|||+|||++
T Consensus 77 ~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~------~~~l~~~l~~~~~-~g~tvIivSH~~ 149 (176)
T cd03238 77 GYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD------INQLLEVIKGLID-LGNTVILIEHNL 149 (176)
T ss_pred CccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 32 2334556889999999999998 6999999999999998 9999999999875 599999999999
Q ss_pred CcccccccchhhhhcCCeE
Q 005892 174 TRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 174 ~~~~~~~~~~~ll~~~GkI 192 (671)
+++. .|++++++.+ |+.
T Consensus 150 ~~~~-~~d~i~~l~~-g~~ 166 (176)
T cd03238 150 DVLS-SADWIIDFGP-GSG 166 (176)
T ss_pred HHHH-hCCEEEEECC-CCC
Confidence 8764 6888888755 544
No 331
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.83 E-value=1.9e-21 Score=208.59 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=111.2
Q ss_pred EEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----------ceE-eccccC-------CCcchhh----------
Q 005892 45 IMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-----------GIW-MARCAG-------IEPCTLI---------- 95 (671)
Q Consensus 45 IlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-----------gi~-~~~~~~-------~~~~~~v---------- 95 (671)
|+|||||||||||++|+|+. +|++|++...+ .+. +..... .++..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~----~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE----QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC----CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH
Confidence 68999999999999999999 89999743211 111 111100 1111111
Q ss_pred --------hhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCC
Q 005892 96 --------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR 162 (671)
Q Consensus 96 --------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~ 162 (671)
++..|+... ......+++|+||++||+|++ ++||||||+++||+.. +..+.+.|.++.++.
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~------~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL------RDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhc
Confidence 111122211 111234677999999999999 9999999999999998 999999999997766
Q ss_pred CcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 163 KTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 163 g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
|+|+|+||||++++..+|++++++.+ |+|...|++.+++..
T Consensus 151 g~tiiivTHd~~e~~~~~d~i~vl~~-G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 151 GITFVFVTHDQEEAMTMSDRIAIMRK-GKIAQIGTPEEIYEE 191 (325)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 99999999999999888999999988 999999998887654
No 332
>PLN03232 ABC transporter C family member; Provisional
Probab=99.83 E-value=9.5e-21 Score=237.84 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=137.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.|+++|++++|.+. ...+++++++.+ .+|+.+||+||+|||||||+++|+|+. +|++|++... |+-+.
T Consensus 1234 ~I~f~nVsf~Y~~~-~~~vL~~isl~I--~~GekvaIVG~SGSGKSTL~~lL~rl~----~p~~G~I~Id-G~di~~i~~ 1305 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG-LPPVLHGLSFFV--SPSEKVGVVGRTGAGKSSMLNALFRIV----ELEKGRIMID-DCDVAKFGL 1305 (1495)
T ss_pred cEEEEEEEEEECCC-CCcccccceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----cCCCceEEEC-CEEhhhCCH
Confidence 49999999999643 457999999999 999999999999999999999999999 8999984211 11110
Q ss_pred -----------cc------cCCCcc-----------hhhhhcc-----------CCCc--ccccccchHHHHHHHHHHHH
Q 005892 85 -----------RC------AGIEPC-----------TLIMDLE-----------GTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 85 -----------~~------~~~~~~-----------~~vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.. +..+|+ .-+++.. |++. .+.+...+++||||+++|||
T Consensus 1306 ~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1306 TDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred HHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 00 000111 0111111 2221 22344567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. ++|||||||++||+.+ -+.|.+.|++.++ ++|+|+|+|+++.+.. ||+++++.+ |+|++.|++.+
T Consensus 1386 LLr~~~ILILDEATSaLD~~T------e~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~-~DrIlVL~~-G~ivE~Gt~~e 1455 (1495)
T PLN03232 1386 LLRRSKILVLDEATASVDVRT------DSLIQRTIREEFK--SCTMLVIAHRLNTIID-CDKILVLSS-GQVLEYDSPQE 1455 (1495)
T ss_pred HHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEeCCHHHHHh-CCEEEEEEC-CEEEEECCHHH
Confidence 99 9999999999999998 8889999988753 7999999999987764 899999988 99999999998
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
++++
T Consensus 1456 Ll~~ 1459 (1495)
T PLN03232 1456 LLSR 1459 (1495)
T ss_pred HHhC
Confidence 8754
No 333
>PLN03130 ABC transporter C family member; Provisional
Probab=99.83 E-value=1e-20 Score=238.13 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=138.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.|+++|++++|.+. ...+++++++.+ .+|+.|||+|++|||||||+++|+|+. +|++|++... |+-+.
T Consensus 1237 ~I~f~nVsf~Y~~~-~~~VL~~is~~I--~~GekVaIVGrSGSGKSTLl~lL~rl~----~p~~G~I~ID-G~dI~~i~l 1308 (1622)
T PLN03130 1237 SIKFEDVVLRYRPE-LPPVLHGLSFEI--SPSEKVGIVGRTGAGKSSMLNALFRIV----ELERGRILID-GCDISKFGL 1308 (1622)
T ss_pred cEEEEEEEEEeCCC-CCceecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhCcC----CCCCceEEEC-CEecccCCH
Confidence 59999999999653 457999999999 999999999999999999999999999 8999984211 11111
Q ss_pred -----------cccC------CCcc-----------hhhhhcc-----------CCCc--ccccccchHHHHHHHHHHHH
Q 005892 85 -----------RCAG------IEPC-----------TLIMDLE-----------GTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 85 -----------~~~~------~~~~-----------~~vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
..+. .+|+ .-+++.. |++. .+++...+++||||++||||
T Consensus 1309 ~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARA 1388 (1622)
T PLN03130 1309 MDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARA 1388 (1622)
T ss_pred HHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHH
Confidence 0000 0110 0011111 2221 22344567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. ++|||||||++||..+ -+.|.+.|++.++ ++|+|+|+|+++.+.. ||+++++.+ |+|++.|+|.+
T Consensus 1389 LLr~p~ILILDEATSaLD~~T------e~~Iq~~I~~~~~--~~TvI~IAHRL~tI~~-~DrIlVLd~-G~IvE~Gt~~e 1458 (1622)
T PLN03130 1389 LLRRSKILVLDEATAAVDVRT------DALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILVLDA-GRVVEFDTPEN 1458 (1622)
T ss_pred HHcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHCC--CCEEEEEeCChHHHHh-CCEEEEEEC-CEEEEeCCHHH
Confidence 99 9999999999999998 8889999998863 7999999999987764 899999888 99999999999
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
++++
T Consensus 1459 Ll~~ 1462 (1622)
T PLN03130 1459 LLSN 1462 (1622)
T ss_pred HHhC
Confidence 8754
No 334
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.83 E-value=1.5e-20 Score=215.48 Aligned_cols=172 Identities=14% Similarity=0.080 Sum_probs=125.6
Q ss_pred eEEEEeeeEEecccc--ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc
Q 005892 9 STQLIDGDGTFNVSG--IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~--l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~ 86 (671)
.|+++|++++|++.. ...++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++... |..+...
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i--~~G~~~aivG~sGsGKSTl~~ll~g~~----~p~~G~i~~~-g~~i~~~ 409 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRI--AQGDIVFIVGENGCGKSTLAKLFCGLY----IPQEGEILLD-GAAVSAD 409 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEE--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEEC-CEECCCC
Confidence 599999999996421 125899999999 999999999999999999999999999 8999984321 1111100
Q ss_pred --------cC-------------CCcc---------hhhhhccCCCcc--------cccccchHHHHHHHHHHHHHH---
Q 005892 87 --------AG-------------IEPC---------TLIMDLEGTDGR--------ERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 87 --------~~-------------~~~~---------~~vld~~g~~~~--------~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
.+ .++. ...+...++... ......+++||||+++|+|+.
T Consensus 410 ~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~ 489 (555)
T TIGR01194 410 SRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDR 489 (555)
T ss_pred CHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCC
Confidence 00 0000 001111222211 111235788999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHH-HhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMM-RLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~-~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+++|+||||++||+.. .+.+.+.+. .+.. .|.|+|+|||+++.. ..||+++++.+ |+|++.-
T Consensus 490 ~ililDE~ts~LD~~~------~~~i~~~l~~~~~~-~~~tiiiisH~~~~~-~~~d~i~~l~~-G~i~~~~ 552 (555)
T TIGR01194 490 PILLFDEWAADQDPAF------KRFFYEELLPDLKR-QGKTIIIISHDDQYF-ELADQIIKLAA-GCIVKDT 552 (555)
T ss_pred CEEEEeCCccCCCHHH------HHHHHHHHHHHHHh-CCCEEEEEeccHHHH-HhCCEEEEEEC-CEEEEec
Confidence 9999999999999998 888887654 3433 489999999999755 46899999888 9998653
No 335
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=4.4e-21 Score=182.01 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=121.3
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.++++++.+.-+ ...++.+++|.+ .+|++++|+||+|||||||+|+++.+. .|++|...- +|-.+.
T Consensus 3 lle~kq~~y~a~---~a~il~~isl~v--~~Ge~iaitGPSG~GKStllk~va~Li----sp~~G~l~f-~Ge~vs~~~p 72 (223)
T COG4619 3 LLELKQVGYLAG---DAKILNNISLSV--RAGEFIAITGPSGCGKSTLLKIVASLI----SPTSGTLLF-EGEDVSTLKP 72 (223)
T ss_pred chHHHHHHhhcC---CCeeecceeeee--cCCceEEEeCCCCccHHHHHHHHHhcc----CCCCceEEE-cCccccccCh
Confidence 455665544433 357899999999 999999999999999999999999999 899997311 111000
Q ss_pred -----------------cccCCCcchhhhh----------------ccCCCcc---cccccchHHHHHHHHHHHHHH---
Q 005892 85 -----------------RCAGIEPCTLIMD----------------LEGTDGR---ERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 85 -----------------~~~~~~~~~~vld----------------~~g~~~~---~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
+....+|..+... -.+++.. .+....+++|+||+++++.|.
T Consensus 73 ea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 73 EAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCC
Confidence 0011122221111 1122211 122345677999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
+||+|||||++||+.+ .+.|-++|.++.++....+++||||.+.+.+.+++++-+.. |.+
T Consensus 153 ~ILLLDE~TsALD~~n------kr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~-G~~ 212 (223)
T COG4619 153 KILLLDEITSALDESN------KRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP-GHA 212 (223)
T ss_pred ceEEecCchhhcChhh------HHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc-Ccc
Confidence 9999999999999998 99999999999987899999999999988777777666555 554
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=99.82 E-value=2.4e-20 Score=218.40 Aligned_cols=176 Identities=9% Similarity=-0.025 Sum_probs=126.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~ 86 (671)
+.+|++.|++++|++. .++.++++.+ .+|+++||+|||||||||||++|+|.... ..|..|++...........
T Consensus 175 ~~~I~i~nls~~y~~~---~ll~~isl~i--~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~-g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISVGGR---DLIVDASVTL--AFGRHYGLVGRNGTGKTTFLRYMAMHAID-GIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred ceeEEEceEEEEeCCC---EEEECCEEEE--CCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCCCCEEEEEeccCCCCC
Confidence 4579999999999653 5999999999 99999999999999999999999996411 1366676421000000000
Q ss_pred -c--------------------CC------------------------Ccc-------------------------hhhh
Q 005892 87 -A--------------------GI------------------------EPC-------------------------TLIM 96 (671)
Q Consensus 87 -~--------------------~~------------------------~~~-------------------------~~vl 96 (671)
. +. ... ..++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 0 00 000 0000
Q ss_pred hccCCCc---ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEe
Q 005892 97 DLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVI 170 (671)
Q Consensus 97 d~~g~~~---~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~Vt 170 (671)
...|+.. .......+++|+||++||++++ ++|||||||++||+.. +..+.+.|.++ +.|+|+||
T Consensus 329 ~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~------~~~l~~~L~~~----~~tviivs 398 (718)
T PLN03073 329 AGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHA------VLWLETYLLKW----PKTFIVVS 398 (718)
T ss_pred HHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHc----CCEEEEEE
Confidence 1112211 1112345778999999999999 9999999999999998 89999988875 67999999
Q ss_pred cCCCcccccccchhhhhcCCeEE-EecCcc
Q 005892 171 RDKTRTPLENLEPVLREDIQKIW-DSVPKP 199 (671)
Q Consensus 171 HDl~~~~~~~~~~~ll~~~GkI~-~~g~~~ 199 (671)
||.+++...|++++++.+ |++. ..|+..
T Consensus 399 Hd~~~l~~~~d~i~~l~~-g~i~~~~g~~~ 427 (718)
T PLN03073 399 HAREFLNTVVTDILHLHG-QKLVTYKGDYD 427 (718)
T ss_pred CCHHHHHHhCCEEEEEEC-CEEEEeCCCHH
Confidence 999998888999999988 9996 556544
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.82 E-value=1.7e-20 Score=234.04 Aligned_cols=167 Identities=11% Similarity=0.054 Sum_probs=125.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM----- 83 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~----- 83 (671)
.|+++|+++.|+......++.++++.+ .+|+++||+||||||||||+++|+|+. +|++|++...++..+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i--~~Ge~vaIvG~SGsGKSTLl~lL~gl~----~p~~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTL--TEGKTYAFVGESGCGKSTILKLIERLY----DPTEGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEE--cCCCEEEEECCCCCCHHHHHHHHHHhc----cCCCCeEEEeCCcchhhCCH
Confidence 599999999996432236999999999 999999999999999999999999999 899998543221111
Q ss_pred ---ccccC-------------CCcchhhh---------------------------------------------------
Q 005892 84 ---ARCAG-------------IEPCTLIM--------------------------------------------------- 96 (671)
Q Consensus 84 ---~~~~~-------------~~~~~~vl--------------------------------------------------- 96 (671)
....+ .+++.+..
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 00000 11111100
Q ss_pred ------------------hccC-------CCc------ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhh
Q 005892 97 ------------------DLEG-------TDG------RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQA 142 (671)
Q Consensus 97 ------------------d~~g-------~~~------~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~ 142 (671)
...+ ++. .+++...+++||||++||+|++ ++|||||||++||+..
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~s- 614 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS- 614 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH-
Confidence 0000 000 1223345678999999999999 9999999999999998
Q ss_pred hChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 143 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 143 ~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
...+.+.|.++.+..|.|+|+|+|++..+ ..||+++++.+
T Consensus 615 -----e~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~ 654 (1466)
T PTZ00265 615 -----EYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSN 654 (1466)
T ss_pred -----HHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeC
Confidence 99999999998754589999999999876 46899988877
No 338
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.81 E-value=3.1e-20 Score=233.56 Aligned_cols=178 Identities=14% Similarity=0.147 Sum_probs=137.3
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.|+++|++++|.+. ...+++++++.+ .+|+.+||+|++|||||||+++|+|+. +|++|++... |+-+.
T Consensus 1284 ~I~f~nVsf~Y~~~-~~~vL~~is~~I--~~GekiaIVGrTGsGKSTL~~lL~rl~----~~~~G~I~Id-G~dI~~i~~ 1355 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-LDLVLRHINVTI--HGGEKVGIVGRTGAGKSSLTLGLFRIN----ESAEGEIIID-GLNIAKIGL 1355 (1522)
T ss_pred cEEEEEEEEEeCCC-CcccccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----cCCCCeEEEC-CEEccccCH
Confidence 49999999999653 357999999999 999999999999999999999999999 8999984211 11110
Q ss_pred -----------ccc------CCCcc-----------hhhhhc-----------cCCCc--ccccccchHHHHHHHHHHHH
Q 005892 85 -----------RCA------GIEPC-----------TLIMDL-----------EGTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 85 -----------~~~------~~~~~-----------~~vld~-----------~g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
..+ ..+|+ ..+++. .|++. .+.+...+++||||+++|||
T Consensus 1356 ~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARA 1435 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARA 1435 (1522)
T ss_pred HHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHH
Confidence 000 00111 011111 12222 12334567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. ++|||||||++||..+ -..+.+.|++.++ ++|+|+|+|+++.+.. +|++++|.+ |+|++.|+|.+
T Consensus 1436 LLr~~~ILiLDEaTSalD~~T------e~~Iq~~l~~~~~--~~TvI~IAHRl~ti~~-~DrIlVld~-G~IvE~G~~~e 1505 (1522)
T TIGR00957 1436 LLRKTKILVLDEATAAVDLET------DNLIQSTIRTQFE--DCTVLTIAHRLNTIMD-YTRVIVLDK-GEVAEFGAPSN 1505 (1522)
T ss_pred HHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEEEEEC-CEEEEECCHHH
Confidence 99 9999999999999998 8888899988763 7999999999987764 899999988 99999999998
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
++++
T Consensus 1506 Ll~~ 1509 (1522)
T TIGR00957 1506 LLQQ 1509 (1522)
T ss_pred HHhC
Confidence 8754
No 339
>PTZ00243 ABC transporter; Provisional
Probab=99.81 E-value=4.8e-20 Score=231.65 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=136.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecc---
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR--- 85 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~--- 85 (671)
.|+++|++++|.+. ...++++++|.+ .+|+.|||+|++|||||||+++|+|+. +|++|++... |+-+..
T Consensus 1308 ~I~f~nVsf~Y~~~-~~~vL~~vsf~I--~~GekVaIVGrTGSGKSTLl~lLlrl~----~p~~G~I~ID-G~di~~i~l 1379 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG-LPLVLRGVSFRI--APREKVGIVGRTGSGKSTLLLTFMRMV----EVCGGEIRVN-GREIGAYGL 1379 (1560)
T ss_pred eEEEEEEEEEeCCC-CCceeecceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEEC-CEEcccCCH
Confidence 49999999999653 456999999999 999999999999999999999999999 8999984211 111110
Q ss_pred ------------cc------CCCcc-----------hhhhhccC-----------CCc--ccccccchHHHHHHHHHHHH
Q 005892 86 ------------CA------GIEPC-----------TLIMDLEG-----------TDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 86 ------------~~------~~~~~-----------~~vld~~g-----------~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
.+ ..+|+ ...++..| ++. .+.+...+++||||++||||
T Consensus 1380 ~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred HHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence 00 00111 01111111 111 12334567889999999999
Q ss_pred HH----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 124 VS----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 124 L~----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
+. ++|||||||++||+.. -+.|.+.|.+.++ ++|+|+|+|+++.+. .||++++|.+ |+|++.|++.
T Consensus 1460 LL~~~~~ILlLDEATSaLD~~t------e~~Iq~~L~~~~~--~~TvI~IAHRl~ti~-~~DrIlVLd~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1460 LLKKGSGFILMDEATANIDPAL------DRQIQATVMSAFS--AYTVITIAHRLHTVA-QYDKIIVMDH-GAVAEMGSPR 1529 (1560)
T ss_pred HhcCCCCEEEEeCCCccCCHHH------HHHHHHHHHHHCC--CCEEEEEeccHHHHH-hCCEEEEEEC-CEEEEECCHH
Confidence 99 4899999999999998 8888899988753 789999999998765 4899999988 9999999999
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
+++.
T Consensus 1530 eLl~ 1533 (1560)
T PTZ00243 1530 ELVM 1533 (1560)
T ss_pred HHHh
Confidence 9874
No 340
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.81 E-value=8e-20 Score=208.28 Aligned_cols=149 Identities=23% Similarity=0.244 Sum_probs=112.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|++++|++. ..+++++++.+ .+|+.++|+||||||||||+|+|+|+. +|++|++...+
T Consensus 334 ~I~~~~vsf~Y~~~--~~vL~~isl~i--~~G~~vaIvG~SGsGKSTLl~lL~g~~----~p~~G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 334 TLELRDLSFGYPGS--PPVLDGVSLDL--PPGERVAILGPSGSGKSTLLMLLTGLL----DPLQGEVTLDGVSVSSLQDE 405 (529)
T ss_pred eEEEEEEEEecCCC--CceeecceEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEhhhHHHH
Confidence 59999999999653 36999999999 999999999999999999999999999 89999853221
Q ss_pred ---ce-EeccccC------CCcchh------------hhhcc-----------CCCc--ccccccchHHHHHHHHHHHHH
Q 005892 80 ---GI-WMARCAG------IEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ---gi-~~~~~~~------~~~~~~------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
.+ ++...+. .+|..+ +++.. |++. .+++...+++||||+++|||+
T Consensus 406 lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 406 LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred HHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 00 1111100 111111 11111 1111 133445678899999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl 173 (671)
. ++|||||||++||+.+ .+.+.+.+.++. .++|+|+|||++
T Consensus 486 l~~~~iliLDE~TSaLD~~t------e~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGT------ESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhc--CCCEEEEEecCC
Confidence 9 9999999999999998 899999998874 378999999984
No 341
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.81 E-value=4.1e-20 Score=230.70 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=133.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC------------------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA------------------ 70 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p------------------ 70 (671)
.|+++|++++|.+....+++++++|.+ .+|+.+||+||+|||||||+++|.|+. +|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i--~~G~~vAIVG~SGsGKSTl~~LL~r~y----dp~~~~~~~~~~~~~~~~~~ 1238 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSC--DSKKTTAIVGETGSGKSTVMSLLMRFY----DLKNDHHIVFKNEHTNDMTN 1238 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEE--cCCCEEEEECCCCCCHHHHHHHHHHhC----CCcccccccccccccccccc
Confidence 499999999996432347999999999 999999999999999999999999998 66
Q ss_pred ------------------------------------CCCeeeccCceEec---------------ccc------CCCcch
Q 005892 71 ------------------------------------FKGRSQTTKGIWMA---------------RCA------GIEPCT 93 (671)
Q Consensus 71 ------------------------------------~sG~~q~~~gi~~~---------------~~~------~~~~~~ 93 (671)
++|++.. .|+-+. ..+ ..+|+.
T Consensus 1239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~i-dG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~ 1317 (1466)
T PTZ00265 1239 EQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILL-DGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK 1317 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCeEEE-CCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHh
Confidence 4665311 111100 000 011111
Q ss_pred hh----------------------hhc-cCCC--cccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhCh
Q 005892 94 LI----------------------MDL-EGTD--GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANK 145 (671)
Q Consensus 94 ~v----------------------ld~-~g~~--~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~ 145 (671)
+. ... .|++ -.+++...+++||||++||||++ ++|||||||++||+.+
T Consensus 1318 ~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s---- 1393 (1466)
T PTZ00265 1318 FGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS---- 1393 (1466)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH----
Confidence 11 000 0111 12344556788999999999999 9999999999999998
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcC---CeEE-EecCcccccC
Q 005892 146 PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI---QKIW-DSVPKPQAHM 203 (671)
Q Consensus 146 ~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~---GkI~-~~g~~~e~~~ 203 (671)
.+.|.+.|.++....+.|+|+|+|++..+. .||+++++.+. |+++ +.|+.++++.
T Consensus 1394 --E~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1394 --EKLIEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred --HHHHHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 889999999885324899999999997765 48888888762 7855 7999888764
No 342
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7e-20 Score=182.28 Aligned_cols=178 Identities=19% Similarity=0.155 Sum_probs=131.2
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeec---------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~--------- 77 (671)
|++++|+|+..+..+. ..+++++|+.+ .+||+++|+||||||||||.++|+|.. -..++.|++..
T Consensus 1 m~~L~I~dLhv~v~~~--keILkgvnL~v--~~GEvhaiMGPNGsGKSTLa~~i~G~p--~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 1 MMMLEIKDLHVEVEGK--KEILKGVNLTV--KEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDILELS 74 (251)
T ss_pred CceeEEeeeEEEecCc--hhhhcCcceeE--cCCcEEEEECCCCCCHHHHHHHHhCCC--CceEecceEEECCcccccCC
Confidence 4689999999999652 48999999999 999999999999999999999999964 22567787321
Q ss_pred -----cCceEeccccC-----CCcchh------------------------hhhccCCCccc-c---cccchHHHHHHHH
Q 005892 78 -----TKGIWMARCAG-----IEPCTL------------------------IMDLEGTDGRE-R---GEDDTAFEKQSAL 119 (671)
Q Consensus 78 -----~~gi~~~~~~~-----~~~~~~------------------------vld~~g~~~~~-r---~~~~~~~qrQrv~ 119 (671)
..|+++.-+.. .....+ .+...+++... . ..-.+++||+|.-
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~E 154 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNE 154 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHH
Confidence 12333321111 000000 11222333210 1 1122455999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc-ccchhhhhcCCeEEEe
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKIWDS 195 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~-~~~~~ll~~~GkI~~~ 195 (671)
++..++ ++.|||||-||||..+ .+.|.+.+..++.+ |.++++|||.-..+..+ .|.+.++.+ |+|+..
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIda------lk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~-GrIv~s 226 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDA------LKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYD-GRIVKS 226 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHH------HHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEEC-CEEEec
Confidence 998888 9999999999999999 99999999999876 99999999998766543 367788888 999999
Q ss_pred cCc
Q 005892 196 VPK 198 (671)
Q Consensus 196 g~~ 198 (671)
|.|
T Consensus 227 G~~ 229 (251)
T COG0396 227 GDP 229 (251)
T ss_pred CCH
Confidence 997
No 343
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.80 E-value=5.9e-20 Score=209.36 Aligned_cols=160 Identities=21% Similarity=0.207 Sum_probs=119.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
.|+++|++++|++. ...+++++++.+ .+|+.++|+||||||||||+|+|+|+. +|++|++... |..
T Consensus 320 ~i~~~~v~f~y~~~-~~~il~~i~l~i--~~G~~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~I~~~-g~~i~~~~~ 391 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-RAPALRPVSFTV--PPGERVALVGPSGAGKSTLLNLLLGFV----DPTEGSIAVN-GVPLADADA 391 (529)
T ss_pred eEEEEEEEEECCCC-CcccccceeEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEEC-CEehhhCCH
Confidence 59999999999653 236899999999 999999999999999999999999999 8999974211 110
Q ss_pred ---------ecccc------CCCcchh------------hhhccCC-----------C--cccccccchHHHHHHHHHHH
Q 005892 83 ---------MARCA------GIEPCTL------------IMDLEGT-----------D--GRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 83 ---------~~~~~------~~~~~~~------------vld~~g~-----------~--~~~r~~~~~~~qrQrv~iAl 122 (671)
+...+ ..+|..+ .+...++ + -.+.+...+++||||+++||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 00000 0111110 1111111 1 11233456788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhh
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~l 185 (671)
|+. +++++||||++||+.. .+.+.+.+.++. .++|+|+|||+++.+. .||++++
T Consensus 472 al~~~~~ililDE~ts~lD~~~------~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~ 528 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAET------EALVTEALRALA--QGRTVLLVTHRLALAE-RADRIVV 528 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHH------HHHHHHHHHHhc--CCCEEEEEecCHHHHH-hCCEEEe
Confidence 999 9999999999999999 899999999885 3899999999997664 4776654
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=99.80 E-value=5.3e-20 Score=211.62 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=115.3
Q ss_pred eeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeec----------cCceEe-
Q 005892 15 GDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------TKGIWM- 83 (671)
Q Consensus 15 lsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~----------~~gi~~- 83 (671)
++++|+.. ..++.+++ .. .+|+++||+||||||||||||+|+|++ +|++|++.. ..|..+
T Consensus 79 ~~~~yg~~--~~~L~~l~-~i--~~Gev~gLvG~NGaGKSTLlkiL~G~l----~p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 79 PVHRYGVN--GFKLYGLP-IP--KEGKVTGILGPNGIGKTTAVKILSGEL----IPNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred ceEEecCC--ceeEecCC-cC--CCCCEEEEECCCCCCHHHHHHHHhCCc----cCCCccccCCCcHHHHHHHhCChHHH
Confidence 56778542 24788888 67 899999999999999999999999999 899998530 111000
Q ss_pred -------------ccccC---CCc-------------------chhhhhccCCCc--ccccccchHHHHHHHHHHHHHH-
Q 005892 84 -------------ARCAG---IEP-------------------CTLIMDLEGTDG--RERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 84 -------------~~~~~---~~~-------------------~~~vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~- 125 (671)
..... ..+ ...+++..|+.. .......+++|+||++||++++
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 00000 000 001112223321 1122345678999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
+++||||||++||+.. +..+.+++.++.+ |.|+|+||||++++...+++++++.+
T Consensus 230 ~p~lllLDEPts~LD~~~------~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQ------RLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred CCCEEEEECCCCCCCHHH------HHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999 9999999999964 89999999999998888999877754
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=1.9e-19 Score=224.39 Aligned_cols=208 Identities=11% Similarity=0.063 Sum_probs=144.0
Q ss_pred eEEEEeeeEEeccc-cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC---CCCCeeeccC-----
Q 005892 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD---AFKGRSQTTK----- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~-~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~---p~sG~~q~~~----- 79 (671)
+|+++|+++.|+.. +...+++++++.+ .+|++++|+||||||||||||+|+|+. + |++|++...+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i--~~Ge~~aI~G~sGaGKSTLL~~Lag~~----~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWV--KPGTLTALMGASGAGKTTLLNVLAERV----TTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEE--ECCEEEEEECCCCCCHHHHHHHHhCCC----CCCCcceeEEEECCEECCh
Confidence 58999999999521 1357999999999 999999999999999999999999998 4 5778742211
Q ss_pred ------ceEecccc------CCCcchh---------------------hhhccCCCccc--cc----ccchHHHHHHHHH
Q 005892 80 ------GIWMARCA------GIEPCTL---------------------IMDLEGTDGRE--RG----EDDTAFEKQSALF 120 (671)
Q Consensus 80 ------gi~~~~~~------~~~~~~~---------------------vld~~g~~~~~--r~----~~~~~~qrQrv~i 120 (671)
+...+... ..++..+ +++..|+.... .. ...+++||||+.|
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~I 912 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTI 912 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHH
Confidence 00011000 0111111 11112222111 11 1357889999999
Q ss_pred HHHHH---H-HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCc-ccccccchhhhhcCCeEEEe
Q 005892 121 ALAVS---D-IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR-TPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 121 AlAL~---e-vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~-~~~~~~~~~ll~~~GkI~~~ 195 (671)
|++++ + +|+|||||+|||+.. ...++++|+++.++ |.|||+++|+++. +...+|+++++.+.|+++..
T Consensus 913 a~aL~~~P~~iLlLDEPTsgLD~~~------~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~ 985 (1394)
T TIGR00956 913 GVELVAKPKLLLFLDEPTSGLDSQT------AWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF 985 (1394)
T ss_pred HHHHHcCCCeEEEEcCCCCCCCHHH------HHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence 99999 5 899999999999999 99999999999764 9999999999975 34568999888883499999
Q ss_pred cCcccccCCccccchhcccc-cccccchhhHHHHHHHH
Q 005892 196 VPKPQAHMETPLSEFFNVEV-VALSSFEEKEELFKEQV 232 (671)
Q Consensus 196 g~~~e~~~~~~l~~~f~~~~-~~lp~~~~~~~~f~~~v 232 (671)
|++.+. ...+.++|...- ...|. ..+|.+|.-++
T Consensus 986 G~~~~~--~~~~~~yf~~~G~~~~p~-~~NpAd~~ldv 1020 (1394)
T TIGR00956 986 GDLGEN--SHTIINYFEKHGAPKCPE-DANPAEWMLEV 1020 (1394)
T ss_pred CCcccc--cchHHHHHHhcCCCCCCC-CCCHHHHHHHH
Confidence 987553 234556665321 12332 24455655443
No 346
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.80 E-value=1.6e-19 Score=227.26 Aligned_cols=180 Identities=20% Similarity=0.204 Sum_probs=136.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce-------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI------- 81 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi------- 81 (671)
.|+++|+++.|+.. ...++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.+
T Consensus 636 ~i~~~~~~~~~~~~-~~~~l~~isl~i--~~G~~v~IvG~~GsGKSTLl~~l~g~~----~~~~G~i~~~g~i~yv~Q~~ 708 (1522)
T TIGR00957 636 SITVHNATFTWARD-LPPTLNGITFSI--PEGALVAVVGQVGCGKSSLLSALLAEM----DKVEGHVHMKGSVAYVPQQA 708 (1522)
T ss_pred cEEEEEeEEEcCCC-CCceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----ccCCcEEEECCEEEEEcCCc
Confidence 69999999999642 246899999999 999999999999999999999999999 8999985432222
Q ss_pred EeccccCCCcchh-----------hh-------hccCCC------cccccccchHHHHHHHHHHHHHH---HHHhccccc
Q 005892 82 WMARCAGIEPCTL-----------IM-------DLEGTD------GRERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (671)
Q Consensus 82 ~~~~~~~~~~~~~-----------vl-------d~~g~~------~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt 134 (671)
|+......+++.+ +. ++..++ -.+++...+++||||+++|||+. +++|||||+
T Consensus 709 ~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred cccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1111111111111 11 111111 12334456789999999999999 999999999
Q ss_pred cCCChhhhhChhHHHHHHHHHHHhhC-CCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 135 HDIGREQAANKPLLKTVFQVMMRLFS-PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 135 ~~LD~~~~~~~~~~~~v~ell~~L~~-~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
++||+.. .+.+++.+.+... ..|+|+|+|||++..+.. ||+++++.+ |+|+..|+++++..
T Consensus 789 saLD~~~------~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~-G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 789 SAVDAHV------GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSG-GKISEMGSYQELLQ 850 (1522)
T ss_pred cccCHHH------HHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecC-CeEEeeCCHHHHHh
Confidence 9999998 8899988865321 237899999999988775 888888887 99999999887654
No 347
>PLN03232 ABC transporter C family member; Provisional
Probab=99.79 E-value=1.3e-19 Score=227.53 Aligned_cols=179 Identities=18% Similarity=0.212 Sum_probs=132.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-c-------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-G------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-g------- 80 (671)
.|+++|+++.|+......++.++++.+ .+|+.++|+||+|||||||+++|.|.. +|.+|.....+ .
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i--~~Ge~vaIvG~sGSGKSTLl~lLlG~~----~~~~G~i~~~~~~Iayv~Q~ 687 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEI--PVGSLVAIVGGTGEGKTSLISAMLGEL----SHAETSSVVIRGSVAYVPQV 687 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----cccCCCEEEecCcEEEEcCc
Confidence 599999999996422346899999999 999999999999999999999999999 88888532111 1
Q ss_pred eEeccccCCCcchh-----------hh-------hccCCCc------ccccccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 81 IWMARCAGIEPCTL-----------IM-------DLEGTDG------RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 81 i~~~~~~~~~~~~~-----------vl-------d~~g~~~------~~r~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
.|+...+..+|+.+ ++ |...++. .+++...+++||||+++|||+. +++|||||
T Consensus 688 p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 688 SWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred cccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 11111111122111 11 1212211 2344456789999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHHH-HHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 134 CHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~el-l~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
|++||+.. .+.+++. +..+. .++|+|+|||++..+. .+|+++++.+ |+|++.|+.+++..
T Consensus 768 tSaLD~~t------~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~-~aD~Ii~L~~-G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 768 LSALDAHV------AHQVFDSCMKDEL--KGKTRVLVTNQLHFLP-LMDRIILVSE-GMIKEEGTFAELSK 828 (1495)
T ss_pred ccccCHHH------HHHHHHHHhhhhh--cCCEEEEEECChhhHH-hCCEEEEEeC-CEEEEecCHHHHHh
Confidence 99999987 6777654 44432 3789999999998765 5889888887 99999999877654
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.79 E-value=1.5e-19 Score=226.77 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=134.6
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---- 84 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~---- 84 (671)
.|+++|++++|.+. ...+++++++.+ .+|+.+||+|++|||||||+++|+|+. + .+|++... |+-+.
T Consensus 1217 ~I~f~nVs~~Y~~~-~~~vL~~is~~I--~~GekvaIvGrSGsGKSTLl~lL~rl~----~-~~G~I~Id-G~di~~i~~ 1287 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA-GRAVLQDLSFSV--EGGQRVGLLGRTGSGKSTLLSALLRLL----S-TEGEIQID-GVSWNSVTL 1287 (1490)
T ss_pred eEEEEEEEEEeCCC-CcceeeccEEEE--cCCCEEEEECCCCCCHHHHHHHHhhhc----C-CCcEEEEC-CEEcccCCH
Confidence 59999999999753 467999999999 999999999999999999999999998 4 67974211 11111
Q ss_pred -----------cccC------CCcc-----------hhhhhccC-----------CCc--ccccccchHHHHHHHHHHHH
Q 005892 85 -----------RCAG------IEPC-----------TLIMDLEG-----------TDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 85 -----------~~~~------~~~~-----------~~vld~~g-----------~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
..+. .+|+ ..+++..+ ++. .+.+...+++||||+++|||
T Consensus 1288 ~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367 (1490)
T ss_pred HHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHH
Confidence 0000 0111 11111111 111 12233457889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. +||||||||++||+.. -..+.+.|++.++ ++|||+|+|.++.+.. ||++++|.+ |+|++.|+|.+
T Consensus 1368 LLr~~~ILlLDEaTS~lD~~T------e~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrIlvL~~-G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1368 ILSKAKILLLDEPSAHLDPVT------LQIIRKTLKQSFS--NCTVILSEHRVEALLE-CQQFLVIEG-SSVKQYDSIQK 1437 (1490)
T ss_pred HhCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEEEEEC-CEEEEeCCHHH
Confidence 99 9999999999999998 8899999998763 7999999999987664 899999888 99999999988
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
+++
T Consensus 1438 Ll~ 1440 (1490)
T TIGR01271 1438 LLN 1440 (1490)
T ss_pred HHc
Confidence 764
No 349
>PLN03130 ABC transporter C family member; Provisional
Probab=99.78 E-value=2.4e-19 Score=225.88 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=133.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCC-CeeeccCce------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK-GRSQTTKGI------ 81 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~s-G~~q~~~gi------ 81 (671)
.|+++|+++.|+......++.++++.+ .+|+.++|+||+|||||||+++|.|.. +|.+ |++...+.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i--~~Ge~vaIvG~sGSGKSTLl~lLlG~~----~~~~GG~I~l~~~Iayv~Q~ 687 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDV--PVGSLVAIVGSTGEGKTSLISAMLGEL----PPRSDASVVIRGTVAYVPQV 687 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEe--cCCCEEEEECCCCCCHHHHHHHHHHhh----ccCCCceEEEcCeEEEEcCc
Confidence 599999999996422346899999999 999999999999999999999999999 8999 774322222
Q ss_pred -EeccccCCCcchh-----------hh-------hccCCC------cccccccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 82 -WMARCAGIEPCTL-----------IM-------DLEGTD------GRERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 82 -~~~~~~~~~~~~~-----------vl-------d~~g~~------~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
|+...+..+|+.+ ++ |+..++ -.+++...+++||||+++|||+. +++|||||
T Consensus 688 p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEp 767 (1622)
T PLN03130 688 SWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDP 767 (1622)
T ss_pred cccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 2211111122211 11 122221 12344456789999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHH-HHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 134 CHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~e-ll~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
+++||+.. .+.+++ .+..+. .|+|+|+|||++..+. .+|+++++.+ |+|++.|+.+++..
T Consensus 768 tSALD~~~------~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-~aD~Ii~L~~-G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 768 LSALDAHV------GRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-QVDRIILVHE-GMIKEEGTYEELSN 828 (1622)
T ss_pred ccccCHHH------HHHHHHHHhhHHh--cCCEEEEEECCHhHHH-hCCEEEEEeC-CEEEEeCCHHHHHh
Confidence 99999987 666664 455443 3799999999998765 4889988887 99999999887654
No 350
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=3.1e-19 Score=211.54 Aligned_cols=179 Identities=17% Similarity=0.181 Sum_probs=139.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----ce---
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----GI--- 81 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----gi--- 81 (671)
-|+++|+++.|+......++.++++.+ .+|+.+||+||+||||||.+.+|-.+. +|+.|.+...+ .+
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i--~~GqTvALVG~SGsGKSTvI~LLeRfY----dp~~G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSI--RAGQTVALVGPSGSGKSTVISLLERFY----DPDAGKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEe--cCCCEEEEECCCCCCHHHHHHHHHHhc----CCCCCeEEECCcccccCCHH
Confidence 399999999998766678999999999 999999999999999999999999999 99999742211 00
Q ss_pred Eecccc-------------CCCcchhh----------------------hhc-cCC--CcccccccchHHHHHHHHHHHH
Q 005892 82 WMARCA-------------GIEPCTLI----------------------MDL-EGT--DGRERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 82 ~~~~~~-------------~~~~~~~v----------------------ld~-~g~--~~~~r~~~~~~~qrQrv~iAlA 123 (671)
|++... ..+|+.+. ... .|. .-.+++...+++||||++||||
T Consensus 1061 ~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 000000 01222222 111 122 2235566678889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. +||||||.|++||.++ -+.|-+.|.+.. .|.|.|+|.|.+..+. -||.++++.+ |+|++.|+-++
T Consensus 1141 ilRnPkILLLDEATSALDseS------ErvVQeALd~a~--~gRT~IvIAHRLSTIq-naD~I~Vi~~-G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSES------ERVVQEALDRAM--EGRTTIVIAHRLSTIQ-NADVIAVLKN-GKVVEQGTHDE 1210 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhh------HHHHHHHHHHhh--cCCcEEEEecchhhhh-cCCEEEEEEC-CEEEecccHHH
Confidence 99 9999999999999998 888888898875 3899999999998876 3888888888 99999999888
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
+.+
T Consensus 1211 L~~ 1213 (1228)
T KOG0055|consen 1211 LLA 1213 (1228)
T ss_pred HHh
Confidence 764
No 351
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.78 E-value=7e-20 Score=174.82 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=135.0
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecccc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA 87 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~ 87 (671)
+++++.|+...-. +-++...+ ..|+++-+||||||||||||-.|+|+. |.+|.++..+. .+....
T Consensus 2 ~l~qln~v~~~tR---L~plS~qv------~aGe~~HliGPNGaGKSTLLA~lAGm~-----~~sGsi~~~G~-~l~~~~ 66 (248)
T COG4138 2 ILMQLNDVAESTR---LGPLSGEV------RAGEILHLVGPNGAGKSTLLARMAGMT-----SGSGSIQFAGQ-PLEAWS 66 (248)
T ss_pred ceeeecccccccc---cccccccc------ccceEEEEECCCCccHHHHHHHHhCCC-----CCCceEEECCc-chhHHh
Confidence 4688888876552 33444444 455699999999999999999999998 88897543211 000000
Q ss_pred C------------CCc-----------------------chhhhhccCCCcccc--cccchHHHHHHHHHHHHHH-----
Q 005892 88 G------------IEP-----------------------CTLIMDLEGTDGRER--GEDDTAFEKQSALFALAVS----- 125 (671)
Q Consensus 88 ~------------~~~-----------------------~~~vld~~g~~~~~r--~~~~~~~qrQrv~iAlAL~----- 125 (671)
+ ..+ +..+.+..+++.... ....+++|-|||-+|..+.
T Consensus 67 ~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd 146 (248)
T COG4138 67 ATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPD 146 (248)
T ss_pred HhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCC
Confidence 0 000 001111222222111 1123456888888876554
Q ss_pred -----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 126 -----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 126 -----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
.+|++|||.++||..+ ...+..++.+++.. |.+|||.+||++.+.+.++++.++.. |++...|..++
T Consensus 147 ~NP~~~LLllDEP~~~LDvAQ------~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 147 ANPAGQLLLLDEPMNSLDVAQ------QSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred CCccceeEEecCCCcchhHHH------HHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhc-CeEEeecchhh
Confidence 7899999999999988 77888888899876 99999999999999988999999988 99999999999
Q ss_pred ccCCccccchhcccccc
Q 005892 201 AHMETPLSEFFNVEVVA 217 (671)
Q Consensus 201 ~~~~~~l~~~f~~~~~~ 217 (671)
++....+...|+.+|..
T Consensus 219 Vlt~~vL~q~fg~~frr 235 (248)
T COG4138 219 VLTPPVLAQAYGMNFRR 235 (248)
T ss_pred hcChHHHHHHhccceEE
Confidence 99888899999887654
No 352
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.78 E-value=3.1e-19 Score=193.88 Aligned_cols=179 Identities=18% Similarity=0.204 Sum_probs=133.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc---eE---
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IW--- 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g---i~--- 82 (671)
.+.++++.+.=.+ .-.+++.+++|.+ .+|+.+|||||||||||||.|+|.|.- +|.+|.+...+. -|
T Consensus 334 ~L~Ve~l~~~PPg-~~~pil~~isF~l--~~G~~lgIIGPSgSGKSTLaR~lvG~w----~p~~G~VRLDga~l~qWd~e 406 (580)
T COG4618 334 ALSVERLTAAPPG-QKKPILKGISFAL--QAGEALGIIGPSGSGKSTLARLLVGIW----PPTSGSVRLDGADLRQWDRE 406 (580)
T ss_pred eeeEeeeeecCCC-CCCcceecceeEe--cCCceEEEECCCCccHHHHHHHHHccc----ccCCCcEEecchhhhcCCHH
Confidence 5889999884433 2568999999999 999999999999999999999999999 899997421110 00
Q ss_pred -eccccC-------------CCcc----------------------hhhhhcc-CCC--cccccccchHHHHHHHHHHHH
Q 005892 83 -MARCAG-------------IEPC----------------------TLIMDLE-GTD--GRERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 83 -~~~~~~-------------~~~~----------------------~~vld~~-g~~--~~~r~~~~~~~qrQrv~iAlA 123 (671)
+....| .+|+ -+++... |.+ -.+.+...+++||||+++|+|
T Consensus 407 ~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred HhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH
Confidence 000011 0000 0111111 111 122333456779999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. .+++||||-++||... -..+.+.|..++++ |.|+|+|+|...... .+|.+.++.+ |++-..|+.++
T Consensus 487 lYG~P~lvVLDEPNsNLD~~G------E~AL~~Ai~~~k~r-G~~vvviaHRPs~L~-~~Dkilvl~~-G~~~~FG~r~e 557 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEG------EAALAAAILAAKAR-GGTVVVIAHRPSALA-SVDKILVLQD-GRIAAFGPREE 557 (580)
T ss_pred HcCCCcEEEecCCCCCcchhH------HHHHHHHHHHHHHc-CCEEEEEecCHHHHh-hcceeeeecC-ChHHhcCCHHH
Confidence 99 8999999999999998 88899999999765 999999999998765 4677777777 99999999888
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
++.
T Consensus 558 VLa 560 (580)
T COG4618 558 VLA 560 (580)
T ss_pred HHH
Confidence 763
No 353
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=3e-19 Score=182.15 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=70.5
Q ss_pred ccchHHHHHHHHHHHHHH---H--HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 108 EDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~---e--vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
...+.+|+||+.+|++++ + +||+||||++||+.. +..+.+++.++.+. |.|+|+||||++++. .|++
T Consensus 136 ~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~------~~~l~~~l~~~~~~-g~tii~itH~~~~~~-~~d~ 207 (226)
T cd03270 136 PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRD------NDRLIETLKRLRDL-GNTVLVVEHDEDTIR-AADH 207 (226)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEEeCHHHHH-hCCE
Confidence 456788999999999998 2 999999999999998 99999999998754 999999999998764 7899
Q ss_pred hhhh------hcCCeEEEec
Q 005892 183 PVLR------EDIQKIWDSV 196 (671)
Q Consensus 183 ~~ll------~~~GkI~~~g 196 (671)
++++ .+ |+|++.|
T Consensus 208 i~~l~~~~~~~~-G~iv~~g 226 (226)
T cd03270 208 VIDIGPGAGVHG-GEIVAQG 226 (226)
T ss_pred EEEeCCCccccC-CEEEecC
Confidence 9888 66 9998865
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.78 E-value=4.3e-19 Score=207.14 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=119.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--ce-Eec
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GI-WMA 84 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--gi-~~~ 84 (671)
.+|+++|+++.|.+. ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++|++.... .+ ++.
T Consensus 450 ~~i~~~nv~~~~~~~--~~il~~isl~i--~~Ge~~~IvG~nGsGKSTLl~lL~Gl~----~~~~G~i~~~~~~~i~~v~ 521 (659)
T TIGR00954 450 NGIKFENIPLVTPNG--DVLIESLSFEV--PSGNHLLICGPNGCGKSSLFRILGELW----PVYGGRLTKPAKGKLFYVP 521 (659)
T ss_pred CeEEEEeeEEECCCC--CeeeecceEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCeEeecCCCcEEEEC
Confidence 369999999999532 36899999999 999999999999999999999999998 78888742210 11 111
Q ss_pred cccC------CCcch-------------------hhhhccCCCccc-----------ccccchHHHHHHHHHHHHHH---
Q 005892 85 RCAG------IEPCT-------------------LIMDLEGTDGRE-----------RGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 85 ~~~~------~~~~~-------------------~vld~~g~~~~~-----------r~~~~~~~qrQrv~iAlAL~--- 125 (671)
..+. .++.. ..++..++.... .+...+++|+||+++|+|++
T Consensus 522 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p 601 (659)
T TIGR00954 522 QRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP 601 (659)
T ss_pred CCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC
Confidence 1100 01111 111112221100 11346788999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
+++||||||++||+.. ...+.+.+.+ .|.|+|+|||+++.+. .||+++++...|
T Consensus 602 ~illLDEpts~LD~~~------~~~l~~~l~~----~~~tvI~isH~~~~~~-~~d~il~l~~~g 655 (659)
T TIGR00954 602 QFAILDECTSAVSVDV------EGYMYRLCRE----FGITLFSVSHRKSLWK-YHEYLLYMDGRG 655 (659)
T ss_pred CEEEEeCCccCCCHHH------HHHHHHHHHH----cCCEEEEEeCchHHHH-hCCEEEEEeCCC
Confidence 9999999999999988 8888888766 2889999999998764 688888776534
No 355
>PLN03140 ABC transporter G family member; Provisional
Probab=99.77 E-value=9.3e-19 Score=217.94 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=136.2
Q ss_pred eEEEEeeeEEeccc----------cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC--CCCCeee
Q 005892 9 STQLIDGDGTFNVS----------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--AFKGRSQ 76 (671)
Q Consensus 9 ~I~i~nlsk~y~~~----------~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~--p~sG~~q 76 (671)
.+..+|+++..... +...++.++++.+ .+|++++|+||||||||||||+|+|.. + +.+|++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i--~~Gel~aL~G~sGaGKTTLL~~LaG~~----~~g~~~G~I~ 940 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF--RPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYIEGDIR 940 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEE--ECCeEEEEECCCCCCHHHHHHHHcCCC----CCCcccceEE
Confidence 58899999887421 1236899999999 999999999999999999999999986 3 2567532
Q ss_pred ccC------------ceEecccc------CCCcch---------------------hhhhccCCCccc--cc-----ccc
Q 005892 77 TTK------------GIWMARCA------GIEPCT---------------------LIMDLEGTDGRE--RG-----EDD 110 (671)
Q Consensus 77 ~~~------------gi~~~~~~------~~~~~~---------------------~vld~~g~~~~~--r~-----~~~ 110 (671)
..+ +...+... ..+++. .+++..|+.... .. ...
T Consensus 941 inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~L 1020 (1470)
T PLN03140 941 ISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020 (1470)
T ss_pred ECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCc
Confidence 110 00011000 001111 112222332211 10 235
Q ss_pred hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC-cccccccchhhh
Q 005892 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLR 186 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~-~~~~~~~~~~ll 186 (671)
+++||||+.||++|+ ++|+|||||+|||+.. ...++++|+++.++ |.|||+++|+++ .+...+|+++++
T Consensus 1021 SgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~------a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARA------AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 788999999999999 9999999999999999 99999999999765 999999999997 466678998888
Q ss_pred hcCCeEEEecCcccccCCccccchhcc
Q 005892 187 EDIQKIWDSVPKPQAHMETPLSEFFNV 213 (671)
Q Consensus 187 ~~~GkI~~~g~~~e~~~~~~l~~~f~~ 213 (671)
.+.|+++..|++.+ ....+.++|.-
T Consensus 1094 ~~gG~~v~~G~~~~--~~~~~~~yF~~ 1118 (1470)
T PLN03140 1094 KRGGQVIYSGPLGR--NSHKIIEYFEA 1118 (1470)
T ss_pred cCCCEEEEECCccc--ccccHHHHHHh
Confidence 76589999998754 22345566643
No 356
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.76 E-value=4.9e-19 Score=190.36 Aligned_cols=177 Identities=15% Similarity=0.171 Sum_probs=131.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|++.|+++.|++. .+++.+|+|.. .+|+.+||+||+|+||||+|++|+.+. +..+|.+...+
T Consensus 537 ~i~fsnvtF~Y~p~--k~vl~disF~v--~pGktvAlVG~SGaGKSTimRlLfRff----dv~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPG--KPVLSDISFTV--QPGKTVALVGPSGAGKSTIMRLLFRFF----DVNSGSITIDGQDIRNVTQS 608 (790)
T ss_pred eEEEEEeEEecCCC--CceeecceEEe--cCCcEEEEECCCCCchhHHHHHHHHHh----hccCceEEEcCchHHHHHHH
Confidence 59999999999764 68999999999 999999999999999999999999998 78889631110
Q ss_pred ------ceE------eccc----------cCCC--------------cchhhhhccCCCcccccccchHHHHHHHHHHHH
Q 005892 80 ------GIW------MARC----------AGIE--------------PCTLIMDLEGTDGRERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ------gi~------~~~~----------~~~~--------------~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlA 123 (671)
|+. +... ...+ .++-..+-....-.+|+-..+++|||||++|++
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 110 1000 0000 000000111111234555567789999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. .+++|||.|++||... -+.+...+.++++ +.|-|+|.|.+..+-. +|.+.++.+ |+|++.|..++
T Consensus 689 iLK~P~iIlLDEATSALDT~t------ER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~~-G~IvErG~Hee 758 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNT------ERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVISN-GRIVERGRHEE 758 (790)
T ss_pred HhcCCcEEEEcchhhhcCCcc------HHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEeC-CeEeecCcHHH
Confidence 99 8999999999999988 8889999999985 5677888899976542 677777777 99999999887
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
+..
T Consensus 759 Ll~ 761 (790)
T KOG0056|consen 759 LLK 761 (790)
T ss_pred HHh
Confidence 764
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.76 E-value=1.3e-18 Score=218.51 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=122.3
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-------ccccCCCcchhh---
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-------ARCAGIEPCTLI--- 95 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~-------~~~~~~~~~~~v--- 95 (671)
.++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.+-+ ...+..+++.+.
T Consensus 440 ~~l~~i~l~i--~~G~~~~I~G~~GsGKSTLl~~l~G~~----~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~ 513 (1490)
T TIGR01271 440 PVLKNISFKL--EKGQLLAVAGSTGSGKSSLLMMIMGEL----EPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSY 513 (1490)
T ss_pred cceeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEEEEeCCCccCCccHHHHHHhcccc
Confidence 4789999999 999999999999999999999999999 899998543322211 111111222111
Q ss_pred --------hh-------ccCCC------cccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHH
Q 005892 96 --------MD-------LEGTD------GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV 151 (671)
Q Consensus 96 --------ld-------~~g~~------~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v 151 (671)
.+ ...++ -.+++...+++||||+++|+|++ +++|||||+++||+.. .+.+
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~------~~~i 587 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT------EKEI 587 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH------HHHH
Confidence 11 11111 11234456788999999999999 9999999999999998 8899
Q ss_pred HHH-HHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 152 FQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 152 ~el-l~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
++. +..+. .|+|+|+|||++..+.. ||+++++.+ |+|...|++.++..
T Consensus 588 ~~~~l~~~~--~~~tvilvtH~~~~~~~-ad~ii~l~~-g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 588 FESCLCKLM--SNKTRILVTSKLEHLKK-ADKILLLHE-GVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHh--cCCeEEEEeCChHHHHh-CCEEEEEEC-CEEEEEcCHHHHHh
Confidence 874 56654 38999999999988764 888888887 99999999877654
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.76 E-value=8.1e-19 Score=197.99 Aligned_cols=164 Identities=18% Similarity=0.234 Sum_probs=122.8
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec--
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA-- 84 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~-- 84 (671)
..+++++|+++.|++. ..++.++++.+ .+|+.+||+||||+|||||||+|.|.. .|.+|.+....++.++
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i--~~g~riaiiG~NG~GKSTLlk~l~g~~----~~~~G~v~~g~~v~igyf 390 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRI--DRGDRIAIVGPNGAGKSTLLKLLAGEL----GPLSGTVKVGETVKIGYF 390 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEe--cCCCEEEEECCCCCCHHHHHHHHhhhc----ccCCceEEeCCceEEEEE
Confidence 3579999999999653 57889999999 999999999999999999999999988 7889975433332221
Q ss_pred -ccc-CCCcchhhhh-------------------ccCCCcc---cccccchHHHHHHHHHHHHHH---HHHhccccccCC
Q 005892 85 -RCA-GIEPCTLIMD-------------------LEGTDGR---ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (671)
Q Consensus 85 -~~~-~~~~~~~vld-------------------~~g~~~~---~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~L 137 (671)
... ...+...++| ..++++. ......+++||-|+.+|+.+. .+|||||||+.|
T Consensus 391 ~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhL 470 (530)
T COG0488 391 DQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL 470 (530)
T ss_pred EehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccC
Confidence 110 1001001111 1122221 122345788999999999998 999999999999
Q ss_pred ChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 138 D~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
|..+ +..+-+.|... .-||||||||..++...|.+++++.+
T Consensus 471 Di~s------~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 471 DIES------LEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred CHHH------HHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 9998 88888888775 45899999999999988877777665
No 359
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.75 E-value=9.9e-19 Score=202.78 Aligned_cols=163 Identities=18% Similarity=0.141 Sum_probs=122.0
Q ss_pred ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC---CCeeeccCceE------------eccc--
Q 005892 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQTTKGIW------------MARC-- 86 (671)
Q Consensus 24 l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~---sG~~q~~~gi~------------~~~~-- 86 (671)
...+++++++.+ .+|++++|+|||||||||||++|+|.. +|. +|++... |.. +...
T Consensus 37 ~~~iL~~vs~~i--~~Ge~~aI~G~sGsGKSTLL~~L~g~~----~~~~~~~G~i~~~-g~~~~~~~~~~~i~yv~Q~~~ 109 (617)
T TIGR00955 37 RKHLLKNVSGVA--KPGELLAVMGSSGAGKTTLMNALAFRS----PKGVKGSGSVLLN-GMPIDAKEMRAISAYVQQDDL 109 (617)
T ss_pred ccccccCCEEEE--eCCeEEEEECCCCCCHHHHHHHHhCCC----CCCCcceeEEEEC-CEECCHHHHhhhceeeccccc
Confidence 356999999999 999999999999999999999999987 453 5653211 110 0000
Q ss_pred -----cCCCcch---------------------hhhhccCCCcc--cc-c-----ccchHHHHHHHHHHHHHH---HHHh
Q 005892 87 -----AGIEPCT---------------------LIMDLEGTDGR--ER-G-----EDDTAFEKQSALFALAVS---DIVL 129 (671)
Q Consensus 87 -----~~~~~~~---------------------~vld~~g~~~~--~r-~-----~~~~~~qrQrv~iAlAL~---evLl 129 (671)
...+++. .+++..|+... .. + ...+++||||+.+|++++ ++++
T Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll 189 (617)
T TIGR00955 110 FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF 189 (617)
T ss_pred cCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE
Confidence 0011111 11122233211 11 1 135788999999999999 9999
Q ss_pred ccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC-cccccccchhhhhcCCeEEEecCcccc
Q 005892 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 130 LDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~-~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+||||+|||+.. ...+++.++++.+. |.|+|+++|++. .+...+|+++++.+ |+++..|++.++
T Consensus 190 lDEPtsgLD~~~------~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~ 254 (617)
T TIGR00955 190 CDEPTSGLDSFM------AYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQA 254 (617)
T ss_pred eeCCCcchhHHH------HHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHH
Confidence 999999999999 99999999999764 999999999995 67778999999987 999999998765
No 360
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.74 E-value=1.8e-18 Score=207.39 Aligned_cols=178 Identities=12% Similarity=0.160 Sum_probs=137.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe----
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM---- 83 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~---- 83 (671)
..+.+.++++.|+.. ..++.++++.+ .+||+.|++|||||||||++|+|.|.. .|++|+... .|-.+
T Consensus 563 ~~~~~~~L~k~y~~~--~~Av~~ls~~V--~~gecfgLLG~NGAGKtT~f~mltG~~----~~t~G~a~i-~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK--DGAVRGLSFAV--PPGECFGLLGVNGAGKTTTFKMLTGET----KPTSGEALI-KGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecch--hhhhcceEEEe--cCCceEEEecCCCCCchhhHHHHhCCc----cCCcceEEE-ecCcccccc
Confidence 468899999999764 22899999999 999999999999999999999999999 899997321 11000
Q ss_pred -----ccccC--------------CCcchhhhhccCCCccc--------------------ccccchHHHHHHHHHHHHH
Q 005892 84 -----ARCAG--------------IEPCTLIMDLEGTDGRE--------------------RGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 84 -----~~~~~--------------~~~~~~vld~~g~~~~~--------------------r~~~~~~~qrQrv~iAlAL 124 (671)
....| .+...+.....|++... .....++++|+|+.+|.|+
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH
Confidence 00011 01111111122322110 1122345699999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+ .+++||||++|+||.. ++.+++++.++.+. |..+|++||.|+++..+|+++.+|.+ |+++..|++.++
T Consensus 714 ig~p~vi~LDEPstGmDP~a------rr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~-G~l~ciGs~q~L 785 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKA------RRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVI-GQLRCIGSPQEL 785 (885)
T ss_pred hcCCCEEEecCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeec-CeeEEecChHHH
Confidence 9 8999999999999999 99999999999875 56999999999999999999999999 999999998875
Q ss_pred c
Q 005892 202 H 202 (671)
Q Consensus 202 ~ 202 (671)
-
T Consensus 786 K 786 (885)
T KOG0059|consen 786 K 786 (885)
T ss_pred H
Confidence 4
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.1e-18 Score=162.96 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=107.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc-Cce------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-KGI------ 81 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~-~gi------ 81 (671)
+++.+|++..-+. +.++.+++|.+ .+|+++-|.||||||||||||+|+|+. +|.+|++.-. .++
T Consensus 2 ~L~a~~L~~~R~e---~~lf~~L~f~l--~~Ge~~~i~G~NG~GKTtLLRilaGLl----~p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 2 MLEAENLSCERGE---RTLFSDLSFTL--NAGEALQITGPNGAGKTTLLRILAGLL----RPDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred cchhhhhhhccCc---ceeecceeEEE--cCCCEEEEECCCCCcHHHHHHHHHccc----CCCCCeEEecCCCCccchhh
Confidence 5777888877744 47888999999 999999999999999999999999999 9999984211 111
Q ss_pred ------EeccccC-------CCcchhhhhccC---------------CCcccc--cccchHHHHHHHHHHHHHH---HHH
Q 005892 82 ------WMARCAG-------IEPCTLIMDLEG---------------TDGRER--GEDDTAFEKQSALFALAVS---DIV 128 (671)
Q Consensus 82 ------~~~~~~~-------~~~~~~vld~~g---------------~~~~~r--~~~~~~~qrQrv~iAlAL~---evL 128 (671)
|+....+ .+|..|..+..| +.+.+. ....+.+|++||++|+-.+ ++.
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 1111222 233333333322 222221 1234567999999998887 999
Q ss_pred hccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 005892 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (671)
Q Consensus 129 lLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~ 174 (671)
|||||+++||..+ ...+-.++..-.. .|-.||++||..-
T Consensus 153 iLDEP~taLDk~g------~a~l~~l~~~H~~-~GGiVllttHq~l 191 (209)
T COG4133 153 ILDEPFTALDKEG------VALLTALMAAHAA-QGGIVLLTTHQPL 191 (209)
T ss_pred eecCcccccCHHH------HHHHHHHHHHHhc-CCCEEEEecCCcc
Confidence 9999999999987 6666666666555 4888999999874
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.73 E-value=5.3e-18 Score=213.33 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=120.0
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-c------cccCCCcchh----
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-A------RCAGIEPCTL---- 94 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~-~------~~~~~~~~~~---- 94 (671)
.++.++++.+ .+|++++|+|||||||||||++|+|+. +|++|++...+.+-+ . ..+..+++.+
T Consensus 674 ~iL~~isl~i--~~G~~~~IiG~nGsGKSTLL~~i~G~~----~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~ 747 (1560)
T PTZ00243 674 VLLRDVSVSV--PRGKLTVVLGATGSGKSTLLQSLLSQF----EISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEE 747 (1560)
T ss_pred eeEeeeEEEE--CCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChh
Confidence 5889999999 999999999999999999999999999 899997532222211 1 1011111111
Q ss_pred -------hhh-------cc----CCC--cccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHH
Q 005892 95 -------IMD-------LE----GTD--GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV 151 (671)
Q Consensus 95 -------vld-------~~----g~~--~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v 151 (671)
+++ .. |.. -.+++...+++||||+++|+|++ +++|||||+++||+.. .+.+
T Consensus 748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~------~~~i 821 (1560)
T PTZ00243 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV------GERV 821 (1560)
T ss_pred hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH------HHHH
Confidence 011 00 111 12334456788999999999999 9999999999999987 7777
Q ss_pred HHHH-HHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 152 FQVM-MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 152 ~ell-~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++.+ .... .|+|+|+|||+++.+. .||+++++.+ |+|...|+..+++..
T Consensus 822 ~~~~~~~~~--~~~TvIlvTH~~~~~~-~ad~ii~l~~-G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 822 VEECFLGAL--AGKTRVLATHQVHVVP-RADYVVALGD-GRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHHHHHhh--CCCEEEEEeCCHHHHH-hCCEEEEEEC-CEEEEecCHHHHHhC
Confidence 7643 3332 3899999999998875 5888888887 999999998877643
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=99.72 E-value=1.9e-18 Score=215.16 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=123.3
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC---CCeeeccC----------ce-Eeccc----
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQTTK----------GI-WMARC---- 86 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~---sG~~q~~~----------gi-~~~~~---- 86 (671)
..+++++++.+ .+|++++|+||||||||||||+|+|.. +|+ +|++...+ .+ ++...
T Consensus 178 ~~IL~~vs~~i--~~Ge~~~llGpnGSGKSTLLk~LaG~l----~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~ 251 (1470)
T PLN03140 178 LTILKDASGII--KPSRMTLLLGPPSSGKTTLLLALAGKL----DPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHV 251 (1470)
T ss_pred ceeccCCeEEE--eCCeEEEEEcCCCCCHHHHHHHHhCCC----CCCCcceeEEEECCEechhhcccceeEEecccccCC
Confidence 35899999999 999999999999999999999999998 676 77642110 00 00000
Q ss_pred ---cCCCcchh----------------------------------------------------hhhccCCCc-------c
Q 005892 87 ---AGIEPCTL----------------------------------------------------IMDLEGTDG-------R 104 (671)
Q Consensus 87 ---~~~~~~~~----------------------------------------------------vld~~g~~~-------~ 104 (671)
+..+++.+ +++..|+.. .
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~ 331 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD 331 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence 00011111 122233321 1
Q ss_pred cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC-Ccccccc
Q 005892 105 ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLEN 180 (671)
Q Consensus 105 ~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl-~~~~~~~ 180 (671)
......+++|||||.+|++++ +++++||||+|||... ...+++.|+++.+..|.|+|+++|+. .++...+
T Consensus 332 ~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t------~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lf 405 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST------TYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLF 405 (1470)
T ss_pred ccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHH------HHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHh
Confidence 111234677999999999999 9999999999999999 99999999999765689999999997 5777889
Q ss_pred cchhhhhcCCeEEEecCcccc
Q 005892 181 LEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 181 ~~~~ll~~~GkI~~~g~~~e~ 201 (671)
|+++++.+ |+++..|++.++
T Consensus 406 D~vilL~~-G~ivy~G~~~~~ 425 (1470)
T PLN03140 406 DDIILLSE-GQIVYQGPRDHI 425 (1470)
T ss_pred heEEEeeC-ceEEEeCCHHHH
Confidence 99999988 999999987765
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.72 E-value=4.3e-18 Score=212.36 Aligned_cols=168 Identities=13% Similarity=-0.016 Sum_probs=123.1
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------------ce-Eeccc-----
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------------GI-WMARC----- 86 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------------gi-~~~~~----- 86 (671)
..+++++++.+ .+|++++|+||||||||||||+|+|+...-..|.+|++...+ .+ ++...
T Consensus 74 ~~iL~~vs~~i--~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 74 FDILKPMDGLI--KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred ceeeeCCEEEE--ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 35889999999 999999999999999999999999985111135778742111 00 00000
Q ss_pred --cCCCcch--------------------------hhhhccCCCccc-------ccccchHHHHHHHHHHHHHH---HHH
Q 005892 87 --AGIEPCT--------------------------LIMDLEGTDGRE-------RGEDDTAFEKQSALFALAVS---DIV 128 (671)
Q Consensus 87 --~~~~~~~--------------------------~vld~~g~~~~~-------r~~~~~~~qrQrv~iAlAL~---evL 128 (671)
...+++. .+++..|+.... .....+++|||||.||++++ +++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 0000010 112223332211 11235677999999999999 999
Q ss_pred hccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC-CcccccccchhhhhcCCeEEEecCcccc
Q 005892 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 129 lLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl-~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
++||||+|||+.. ...+.+.|+++.++.|.|+|+++|+. ..+...+|+++++.+ |+++..|++.++
T Consensus 232 llDEPTsgLD~~~------~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSAT------ALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHH------HHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCHHHH
Confidence 9999999999999 99999999999875699999999997 577778999999988 999999987654
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=2.1e-17 Score=200.12 Aligned_cols=179 Identities=15% Similarity=0.182 Sum_probs=138.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
-|+++|++.+|.+. +..+++++++.+ .+||.|||+|..|||||||+++|+.+. .|.+|++...+
T Consensus 1138 ~I~f~~~~~RYrp~-lp~VLk~is~~I--~p~eKVGIVGRTGaGKSSL~~aLFRl~----e~~~G~I~IDgvdI~~igL~ 1210 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPN-LPLVLKGISFTI--KPGEKVGIVGRTGAGKSSLILALFRLV----EPAEGEILIDGVDISKIGLH 1210 (1381)
T ss_pred eEEEEEeEEEeCCC-CcchhcCceEEE--cCCceEEEeCCCCCCHHHHHHHHHHhc----CccCCeEEEcCeecccccHH
Confidence 59999999999874 789999999999 999999999999999999999999999 78999843211
Q ss_pred ------------ceEeccccC--CCc--------chhhhh----------cc-CCCc--ccccccchHHHHHHHHHHHHH
Q 005892 80 ------------GIWMARCAG--IEP--------CTLIMD----------LE-GTDG--RERGEDDTAFEKQSALFALAV 124 (671)
Q Consensus 80 ------------gi~~~~~~~--~~~--------~~~vld----------~~-g~~~--~~r~~~~~~~qrQrv~iAlAL 124 (671)
.+.+.|... .++ +-..++ .+ |++. .+.|+..+.+|||.+++|||+
T Consensus 1211 dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1211 DLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred HHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 011111100 011 001111 11 2222 233444567899999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
. +||+|||.|+++|+.. =..|-+.|++-++ ++|||.|-|.+..+.. ||+++||++ |+|++.++|.++
T Consensus 1291 Lr~skILvLDEATAsVD~~T------D~lIQ~tIR~~F~--dcTVltIAHRl~TVmd-~DrVlVld~-G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPET------DALIQKTIREEFK--DCTVLTIAHRLNTVMD-SDRVLVLDA-GRVVEFDSPAEL 1360 (1381)
T ss_pred hccCCEEEEecccccCChHH------HHHHHHHHHHHhc--CCeEEEEeeccchhhh-cCeEEEeeC-CeEeecCChHHH
Confidence 9 9999999999999987 6667778888775 6999999999987764 899999988 999999999998
Q ss_pred cCC
Q 005892 202 HME 204 (671)
Q Consensus 202 ~~~ 204 (671)
+++
T Consensus 1361 l~~ 1363 (1381)
T KOG0054|consen 1361 LSD 1363 (1381)
T ss_pred HhC
Confidence 865
No 366
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.70 E-value=1.2e-17 Score=182.56 Aligned_cols=172 Identities=14% Similarity=0.127 Sum_probs=125.8
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~ 86 (671)
.|.|.+.|+++.|.+.. .+..+++|++ ..+..+++|||||+|||||||++.|.+ .|..|.+...-+..+...
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgi--d~~srvAlVGPNG~GKsTLlKl~~gdl----~p~~G~vs~~~H~~~~~y 458 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGI--DLDSRVALVGPNGAGKSTLLKLITGDL----QPTIGMVSRHSHNKLPRY 458 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhccc--CcccceeEecCCCCchhhhHHHHhhcc----ccccccccccccccchhh
Confidence 46899999999997642 6788899999 999999999999999999999999999 899997432222222210
Q ss_pred c---C----C--Ccchhh----------------hhccCCCcccc---cccchHHHHHHHHHHHHHH---HHHhcccccc
Q 005892 87 A---G----I--EPCTLI----------------MDLEGTDGRER---GEDDTAFEKQSALFALAVS---DIVLINMWCH 135 (671)
Q Consensus 87 ~---~----~--~~~~~v----------------ld~~g~~~~~r---~~~~~~~qrQrv~iAlAL~---evLlLDEpt~ 135 (671)
. . . ....++ +-..|+.+... ....+++||.||+||+.+. .+|+|||||+
T Consensus 459 ~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn 538 (614)
T KOG0927|consen 459 NQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN 538 (614)
T ss_pred hhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc
Confidence 0 0 0 001111 11223332221 1234567999999999998 8999999999
Q ss_pred CCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE-EEecC
Q 005892 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVP 197 (671)
Q Consensus 136 ~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI-~~~g~ 197 (671)
+||... ...+.+.|.+. .-++|+||||+..+..++.++.+..+ |.+ ...|.
T Consensus 539 hLDi~t------id~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~-~~~~~~~G~ 590 (614)
T KOG0927|consen 539 HLDIET------IDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCEN-GTVTKWDGD 590 (614)
T ss_pred CCCchh------HHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhcc-CceeecCcc
Confidence 999988 77777877764 45799999999999999999888888 544 34454
No 367
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=3.2e-17 Score=189.31 Aligned_cols=176 Identities=18% Similarity=0.129 Sum_probs=129.7
Q ss_pred eEEEEeeeEEeccc--cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc
Q 005892 9 STQLIDGDGTFNVS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (671)
Q Consensus 9 ~I~i~nlsk~y~~~--~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~ 86 (671)
.+...|++..-... ....++++|+... .+|++.||+||+|||||||||+|+|-...- ...+|. +.+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~--~~Gel~AimG~SGsGKtTLL~~Lagr~~~~-~~~~G~------ilvNG~ 95 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTA--KPGELLAIMGPSGSGKTTLLNALAGRLNGG-LKLSGE------ILLNGR 95 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEE--ecCeEEEEECCCCCCHHHHHHHHhccccCC-CcceEE------EEECCc
Confidence 36677777777543 2578999999999 999999999999999999999999988210 023454 222221
Q ss_pred cC------------------------CCc---------------------chhhhhccCCCccc--cc-----ccchHHH
Q 005892 87 AG------------------------IEP---------------------CTLIMDLEGTDGRE--RG-----EDDTAFE 114 (671)
Q Consensus 87 ~~------------------------~~~---------------------~~~vld~~g~~~~~--r~-----~~~~~~q 114 (671)
.. .+. ..-+++..|+..-. +. +-.+++|
T Consensus 96 ~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 96 PRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred cCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccch
Confidence 00 000 00011111221000 00 1235679
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC-CcccccccchhhhhcCC
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQ 190 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl-~~~~~~~~~~~ll~~~G 190 (671)
|+||.||.=+. .+|++||||+|||... ...++++|++++++ |+|||++.|.. ..+....|+++++.. |
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~s------A~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~-G 247 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFS------ALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSE-G 247 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhh------HHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcC-C
Confidence 99999999999 8999999999999998 99999999999988 99999999999 467777899999998 9
Q ss_pred eEEEecCcccc
Q 005892 191 KIWDSVPKPQA 201 (671)
Q Consensus 191 kI~~~g~~~e~ 201 (671)
+++..|++.+.
T Consensus 248 ~~vy~G~~~~~ 258 (613)
T KOG0061|consen 248 EVVYSGSPREL 258 (613)
T ss_pred cEEEecCHHHH
Confidence 99999998654
No 368
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.70 E-value=3.1e-17 Score=165.72 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=105.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc----------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT---------- 78 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~---------- 78 (671)
.|+++|.. .|.+. ..++|.. +.+|++++|+|||||||||||++|.+.++ .+..+.....
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~-~~~~~~~~i~G~NGsGKSTll~~i~~~l~---g~~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTG-LDNNGLFLICGPTGAGKSTILDAITYALY---GKTPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCC-CCccCEEEEECCCCCCHHHHHHHheeeEe---cCccccccchhHHHHhcCCC
Confidence 47788887 66332 2334443 13588999999999999999999997553 1222211100
Q ss_pred --C--ceEeccc---------cCCCcchh----hhhccCCCc--ccccccchHHHHHHHHHHHHHH-------------H
Q 005892 79 --K--GIWMARC---------AGIEPCTL----IMDLEGTDG--RERGEDDTAFEKQSALFALAVS-------------D 126 (671)
Q Consensus 79 --~--gi~~~~~---------~~~~~~~~----vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~-------------e 126 (671)
. ++.+... .+.....+ .+...++.. .......+.+|+||+.+|++++ +
T Consensus 74 ~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~ 153 (213)
T cd03279 74 DTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLE 153 (213)
T ss_pred ccEEEEEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCC
Confidence 0 0011100 00000000 001011111 1122335677999999999997 4
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
++|+|||+++||+.. ...+.+.+.++.++ |.|+|+|||+++.+...+++++++.+
T Consensus 154 ~lllDEp~~~lD~~~------~~~~~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~~~~~ 208 (213)
T cd03279 154 ALFIDEGFGTLDPEA------LEAVATALELIRTE-NRMVGVISHVEELKERIPQRLEVIKT 208 (213)
T ss_pred EEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEECchHHHHhhCcEEEEEec
Confidence 799999999999998 89999999998654 89999999999988888888888777
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.6e-17 Score=156.75 Aligned_cols=164 Identities=20% Similarity=0.222 Sum_probs=116.4
Q ss_pred ceEEEEeeeEEecc---cc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeec-cCceE
Q 005892 8 CSTQLIDGDGTFNV---SG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-TKGIW 82 (671)
Q Consensus 8 ~~I~i~nlsk~y~~---~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~-~~gi~ 82 (671)
..|.++|++|+|.- .+ .-+++.+++|++ ..||++++=||+||||||||++|.|-. .|++|++.. ..|-|
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV--~aGECvvL~G~SG~GKStllr~LYaNY----~~d~G~I~v~H~g~~ 76 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSV--NAGECVVLHGPSGSGKSTLLRSLYANY----LPDEGQILVRHEGEW 76 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEe--cCccEEEeeCCCCCcHHHHHHHHHhcc----CCCCceEEEEeCcch
Confidence 36899999999941 12 347999999999 999999999999999999999999998 799997421 11222
Q ss_pred eccccC--------------C-------Ccchhhhhcc-------CCCccc---------------------ccccchHH
Q 005892 83 MARCAG--------------I-------EPCTLIMDLE-------GTDGRE---------------------RGEDDTAF 113 (671)
Q Consensus 83 ~~~~~~--------------~-------~~~~~vld~~-------g~~~~~---------------------r~~~~~~~ 113 (671)
+.-... + -+-.-.+|+. |.+... .....+++
T Consensus 77 vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGG 156 (235)
T COG4778 77 VDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGG 156 (235)
T ss_pred hhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCc
Confidence 211000 0 0000011111 111100 00112345
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchh
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ 184 (671)
|+|||.||++++ .||+|||||+.||..+ +..+.++|.+-+. +|..+|=+-||-+.-...|++..
T Consensus 157 EqQRVNIaRgfivd~pILLLDEPTasLDa~N------r~vVveli~e~Ka-~GaAlvGIFHDeevre~vadR~~ 223 (235)
T COG4778 157 EQQRVNIARGFIVDYPILLLDEPTASLDATN------RAVVVELIREAKA-RGAALVGIFHDEEVREAVADRLL 223 (235)
T ss_pred hheehhhhhhhhccCceEEecCCcccccccc------hHHHHHHHHHHHh-cCceEEEeeccHHHHHHHhhhee
Confidence 999999999999 9999999999999998 9999999998765 59999999999866555566543
No 370
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.1e-16 Score=169.19 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=120.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccC
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~ 88 (671)
.|+++|+.+.|... .--+--||+.+ .+||+|-|+|.||||||||++.|.|+. +|++|+ |...+.+.
T Consensus 322 ~lelrnvrfay~~~--~FhvgPiNl~i--krGelvFliG~NGsGKST~~~LLtGL~----~PqsG~------I~ldg~pV 387 (546)
T COG4615 322 TLELRNVRFAYQDN--AFHVGPINLTI--KRGELVFLIGGNGSGKSTLAMLLTGLY----QPQSGE------ILLDGKPV 387 (546)
T ss_pred ceeeeeeeeccCcc--cceecceeeEE--ecCcEEEEECCCCCcHHHHHHHHhccc----CCCCCc------eeECCccC
Confidence 59999999999542 12234568888 899999999999999999999999999 899995 44444332
Q ss_pred C---------------CcchhhhhccCCCc-------------------------ccccccchHHHHHHHHHHHHHH---
Q 005892 89 I---------------EPCTLIMDLEGTDG-------------------------RERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 89 ~---------------~~~~~vld~~g~~~-------------------------~~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
. .+..+.-+..|... +...-..+.+||+|++.-.|+.
T Consensus 388 ~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR 467 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEER 467 (546)
T ss_pred CCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhC
Confidence 1 11111112222221 0111123455999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEec
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g 196 (671)
+|+++|||.++-||.- ++.++..+.-+.++.|+||+.||||-.--. .+|+...+.+ |++++.-
T Consensus 468 ~Ilv~DEWAADQDPaF------RR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~-G~~~e~t 530 (546)
T COG4615 468 DILVLDEWAADQDPAF------RREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRN-GQLSELT 530 (546)
T ss_pred CeEEeehhhccCChHH------HHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhc-Cceeecc
Confidence 9999999999888877 999999887776777999999999974322 2555555666 9998753
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.68 E-value=4e-17 Score=163.18 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=95.9
Q ss_pred cccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeee---ccC------------------ceEecccc
Q 005892 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---TTK------------------GIWMARCA 87 (671)
Q Consensus 29 ~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q---~~~------------------gi~~~~~~ 87 (671)
.++++.. .+| +++|+||||||||||+++|+|+. .|..|... ..+ +..++...
T Consensus 14 ~~~~l~~--~~g-~~~i~G~nGsGKStll~al~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~ 86 (197)
T cd03278 14 DKTTIPF--PPG-LTAIVGPNGSGKSNIIDAIRWVL----GEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSD 86 (197)
T ss_pred CCeeeec--CCC-cEEEECCCCCCHHHHHHHHHHHh----ccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCC
Confidence 4456666 677 99999999999999999999997 44433200 000 01111000
Q ss_pred CC------CcchhhhhccCCCcccccccchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHH
Q 005892 88 GI------EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQV 154 (671)
Q Consensus 88 ~~------~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~el 154 (671)
.. .....+++..+. ........+.+|+||+++|++++ +++++|||+++||+.. ...+.++
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~------~~~l~~~ 159 (197)
T cd03278 87 GRYSIISQGDVSEIIEAPGK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN------VERFARL 159 (197)
T ss_pred CceeEEehhhHHHHHhCCCc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH------HHHHHHH
Confidence 00 001112222111 11122345678999999999984 6999999999999999 9999999
Q ss_pred HHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 155 MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 155 l~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
+.++.+ +.|||+|||+++.+. .|++++.+..
T Consensus 160 l~~~~~--~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 160 LKEFSK--ETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred HHHhcc--CCEEEEEECCHHHHh-hcceEEEEEe
Confidence 999853 689999999998654 6777766554
No 372
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=8e-17 Score=150.63 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=104.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC---CCee----------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRS---------- 75 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~---sG~~---------- 75 (671)
++.++|++...++ ...+-++|+.+ .+||||.|+||+||||||||.-+.|.+ .+. +|+.
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Ti--a~GeivtlMGPSGcGKSTLls~~~G~L----a~~F~~~G~~~l~~~~l~~l 72 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTI--AKGEIVTLMGPSGCGKSTLLSWMIGAL----AGQFSCTGELWLNEQRLDML 72 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEe--cCCcEEEEECCCCccHHHHHHHHHhhc----ccCcceeeEEEECCeecccc
Confidence 5889999977644 46778899999 999999999999999999999999988 332 3431
Q ss_pred ---eccCceEecccc------CCCcchhh-----------------hhccCCCccc--ccccchHHHHHHHHHHHHHH--
Q 005892 76 ---QTTKGIWMARCA------GIEPCTLI-----------------MDLEGTDGRE--RGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 76 ---q~~~gi~~~~~~------~~~~~~~v-----------------ld~~g~~~~~--r~~~~~~~qrQrv~iAlAL~-- 125 (671)
|..-|+.++... ...++.+. ++..|+.+.. .....+++||-||++-+++.
T Consensus 73 Pa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~ 152 (213)
T COG4136 73 PAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQ 152 (213)
T ss_pred chhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhC
Confidence 011122222110 01111111 1112222111 11123456999999999998
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
+.++||||++.||..- +..+.+..-.-.+..|+..|+||||+..++
T Consensus 153 Pk~lLLDEPFS~LD~AL------R~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 153 PKALLLDEPFSRLDVAL------RDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred cceeeeCCchhHHHHHH------HHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9999999999999765 666666544333445999999999999887
No 373
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.1e-17 Score=172.74 Aligned_cols=177 Identities=16% Similarity=0.146 Sum_probs=133.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.+.++++++.|.+. .+++.++++.. ..|..++|+||+|+||||++++|+... ++.+|.+...+
T Consensus 262 ~v~F~~V~F~y~~~--r~iL~~isf~i--~~g~tvAiVg~SG~gKsTI~rllfRFy----D~~sG~I~id~qdir~vtq~ 333 (497)
T COG5265 262 AVAFINVSFAYDPR--RPILNGISFTI--PLGKTVAIVGESGAGKSTILRLLFRFY----DVNSGSITIDGQDIRDVTQQ 333 (497)
T ss_pred eEEEEEEEeecccc--chhhcCccccc--cCccEEEEEeCCCCcHHHHHHHHHHHh----CCcCceEEEcchhHHHhHHH
Confidence 47899999999764 68999999999 999999999999999999999999999 89999842111
Q ss_pred ------ceEeccccCCCcc----------------------------hhhh---hccCCCcccccccchHHHHHHHHHHH
Q 005892 80 ------GIWMARCAGIEPC----------------------------TLIM---DLEGTDGRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ------gi~~~~~~~~~~~----------------------------~~vl---d~~g~~~~~r~~~~~~~qrQrv~iAl 122 (671)
|+..+. ....+. .++. +-..+.-.+|+-..+++|||||++|+
T Consensus 334 slR~aIg~VPQD-tvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar 412 (497)
T COG5265 334 SLRRAIGIVPQD-TVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412 (497)
T ss_pred HHHHHhCcCccc-ceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHH
Confidence 000000 000000 0000 10111223444445667999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
++. .+|++||.|++||... -+.+...++++. .|.|-+++-|.+..+.. +|.++++.+ |+|++.|+-.
T Consensus 413 ~ilk~p~il~~deatsaldt~t------e~~iq~~l~~~~--~~rttlviahrlsti~~-adeiivl~~-g~i~erg~h~ 482 (497)
T COG5265 413 TILKNPPILILDEATSALDTHT------EQAIQAALREVS--AGRTTLVIAHRLSTIID-ADEIIVLDN-GRIVERGTHE 482 (497)
T ss_pred HHhcCCCEEEEehhhhHhhhhH------HHHHHHHHHHHh--CCCeEEEEeehhhhccC-CceEEEeeC-CEEEecCcHH
Confidence 999 8999999999999988 888888898886 37788889999976542 788999888 9999999988
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
+++..
T Consensus 483 ~ll~~ 487 (497)
T COG5265 483 ELLAA 487 (497)
T ss_pred HHHHc
Confidence 77643
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=1.9e-16 Score=191.86 Aligned_cols=182 Identities=23% Similarity=0.264 Sum_probs=139.8
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce-----
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI----- 81 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi----- 81 (671)
.+.+++.|.++++++....+.+++|++.+ ++|+.+||+||-|||||+||.+|.|-. +..+|.....+.+
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i--~~G~lvaVvG~vGsGKSSLL~AiLGEm----~~~sG~v~v~gsiaYv~Q 589 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEI--KKGQLVAVVGPVGSGKSSLLSAILGEM----PKLSGSVAVNGSVAYVPQ 589 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEe--cCCCEEEEECCCCCCHHHHHHHHhcCc----ccccceEEEcCeEEEecc
Confidence 34799999999997633455999999999 999999999999999999999999988 7889985444333
Q ss_pred --EeccccCCCcchh------------------hhhccCCCc------ccccccchHHHHHHHHHHHHHH---HHHhccc
Q 005892 82 --WMARCAGIEPCTL------------------IMDLEGTDG------RERGEDDTAFEKQSALFALAVS---DIVLINM 132 (671)
Q Consensus 82 --~~~~~~~~~~~~~------------------vld~~g~~~------~~r~~~~~~~qrQrv~iAlAL~---evLlLDE 132 (671)
|+...+..+|+.+ --|.+-++. .++|-..+++||||+.+|||+. |+.+||-
T Consensus 590 ~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 590 QPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred ccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 3332222333332 123333332 3455556789999999999999 9999999
Q ss_pred cccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 133 pt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
|.+++|... .+.+++-.....- +++|+|+|||.++..+ .+|.+++|.+ |+|...|+.+++.+
T Consensus 670 plSAVDahv------g~~if~~ci~~~L-~~KT~ILVTHql~~L~-~ad~Iivl~~-G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 670 PLSAVDAHV------GKHIFEECIRGLL-RGKTVILVTHQLQFLP-HADQIIVLKD-GKIVESGTYEELLK 731 (1381)
T ss_pred cchhhhHhh------hHHHHHHHHHhhh-cCCEEEEEeCchhhhh-hCCEEEEecC-CeEecccCHHHHHh
Confidence 999999887 6777765443322 3799999999888877 4888998888 99999999988764
No 375
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.66 E-value=1.8e-16 Score=155.17 Aligned_cols=176 Identities=15% Similarity=0.200 Sum_probs=129.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeec----------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT---------- 77 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~---------- 77 (671)
..|++.++.+.|.. ..++..++|+.. +.|....++|.|||||||||++|+|-.. .-.|.++.
T Consensus 12 ~aievsgl~f~y~~--~dP~~~Dfnldl--p~gsRcLlVGaNGaGKtTlLKiLsGKhm----v~~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV--SDPIFFDFNLDL--PAGSRCLLVGANGAGKTTLLKILSGKHM----VGGGVVQVLGRSAFHDTS 83 (291)
T ss_pred ceEEEeccEEeccc--CCceEEEEeecc--CCCceEEEEecCCCchhhhHHHhcCccc----ccCCeEEEcCcCcccccc
Confidence 36999999999965 368999999999 9999999999999999999999999761 12233211
Q ss_pred ---------cCceEeccc-----cCCC----cchhhhhccCCCcccccc---------------cchHHHHHHHHHHHHH
Q 005892 78 ---------TKGIWMARC-----AGIE----PCTLIMDLEGTDGRERGE---------------DDTAFEKQSALFALAV 124 (671)
Q Consensus 78 ---------~~gi~~~~~-----~~~~----~~~~vld~~g~~~~~r~~---------------~~~~~qrQrv~iAlAL 124 (671)
.++-|.... .... ....+..+.|.++ +|++ ..+.+||+||.|++.|
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp-~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGL 162 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDP-ERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGL 162 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHHhhccCCCh-hHhhhhhhheeccceEEEeeccccchhhhHHHHhc
Confidence 111121100 0000 0011222333333 3322 2345699999999999
Q ss_pred H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 125 ~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
. ++|+|||-|.+||... +..+++.+++-+.++|.||+++||-.+-......+++.+.. |+|+...+..
T Consensus 163 L~PfkVLLLDEVTVDLDVlA------RadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~-Gkl~~~l~~~ 233 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLA------RADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKS-GKLVDNLKYQ 233 (291)
T ss_pred ccceeEEEeeeeEeehHHHH------HHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecC-Ceeeeccccc
Confidence 9 9999999999999998 99999999999999999999999999877767778887777 9998765543
No 376
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.64 E-value=1.6e-16 Score=155.70 Aligned_cols=187 Identities=15% Similarity=0.149 Sum_probs=131.2
Q ss_pred cceEEEEeeeEEec-cccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecc
Q 005892 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR 85 (671)
Q Consensus 7 ~~~I~i~nlsk~y~-~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~ 85 (671)
|+.+.|.|++..|. ..+...+...+++.. ..|||-|++|.+|||||-..+.|+|...+.-..+..+.. ...+.+-.
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltl--nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~R-f~~idLL~ 77 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTL--NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMR-FDDIDLLR 77 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeee--ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcc-cccchhhc
Confidence 46788999999984 334567889999999 999999999999999999999999987321111111100 00000000
Q ss_pred --------ccC------CCcchh--------------------------------------hhhccCCCccc-----ccc
Q 005892 86 --------CAG------IEPCTL--------------------------------------IMDLEGTDGRE-----RGE 108 (671)
Q Consensus 86 --------~~~------~~~~~~--------------------------------------vld~~g~~~~~-----r~~ 108 (671)
..+ +.+... ++-..|..... ...
T Consensus 78 L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ 157 (330)
T COG4170 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY 157 (330)
T ss_pred CChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc
Confidence 000 000000 00111111100 001
Q ss_pred cchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhh
Q 005892 109 DDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~l 185 (671)
....++-|+|+||+|++ .+||.||||+++++.. ..+++.++.++++..|+||++++||+..+...|+++.+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~T------q~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~V 231 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT------QAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINV 231 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccH------HHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEE
Confidence 11233889999999999 8999999999999998 99999999999998999999999999998889999988
Q ss_pred hhcCCeEEEecCcccccC
Q 005892 186 REDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 186 l~~~GkI~~~g~~~e~~~ 203 (671)
+.- |+-++.++.+++.+
T Consensus 232 lYC-GQ~~ESa~~e~l~~ 248 (330)
T COG4170 232 LYC-GQTVESAPSEELVT 248 (330)
T ss_pred EEe-cccccccchhHHhc
Confidence 877 99888887776553
No 377
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.63 E-value=8.4e-16 Score=159.81 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=71.8
Q ss_pred ccchHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 108 EDDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
...+++|+||+.+|++++ +++|+||||++||+.. ...+.+++.++.+. |.|+|+|||+++++. .++
T Consensus 168 ~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~tvIiitH~~~~i~-~aD 239 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD------VKKLLEVLQRLVDK-GNTVVVIEHNLDVIK-CAD 239 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-hCC
Confidence 445778999999999999 3999999999999998 99999999998764 899999999998875 588
Q ss_pred chhhhh-----cCCeEEEecCc
Q 005892 182 EPVLRE-----DIQKIWDSVPK 198 (671)
Q Consensus 182 ~~~ll~-----~~GkI~~~g~~ 198 (671)
+++.+. +.|+|++.|+|
T Consensus 240 ~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEEecCCcCCCCCEEEEeCCC
Confidence 888882 34999999874
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=2.1e-15 Score=154.83 Aligned_cols=71 Identities=8% Similarity=-0.057 Sum_probs=58.6
Q ss_pred ccchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 108 EDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
...+++|+||+++|++++ +++|+|||+++||+.. ...+++.+.++.+ ++++|+++|+.+ +...|
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~------~~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~ 227 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQY------RTAVANMIKELSD--GAQFITTTFRPE-LLEVA 227 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHH-HHhhC
Confidence 345678999999999993 7999999999999998 9999999999853 788888888854 55678
Q ss_pred cchhhhh
Q 005892 181 LEPVLRE 187 (671)
Q Consensus 181 ~~~~ll~ 187 (671)
++++++.
T Consensus 228 d~i~~l~ 234 (243)
T cd03272 228 DKFYGVK 234 (243)
T ss_pred CEEEEEE
Confidence 8776654
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.58 E-value=1.6e-15 Score=152.48 Aligned_cols=139 Identities=13% Similarity=0.112 Sum_probs=89.7
Q ss_pred EEEEEcCCCCChHHHHHHHh----cccCCCCCCCCCeee----c----cC----ceEeccccCC----Ccchhhhhcc-C
Q 005892 42 VVSIMGPQSSGKSTLLNHLF----GTNFREMDAFKGRSQ----T----TK----GIWMARCAGI----EPCTLIMDLE-G 100 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~----Gl~f~~m~p~sG~~q----~----~~----gi~~~~~~~~----~~~~~vld~~-g 100 (671)
+++|+|||||||||||++|. |.. .|..|... . .. ++.+....+. .....+.+.. .
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~----~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~ 99 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGEL----PPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF 99 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC----CcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceee
Confidence 99999999999999999995 776 56555210 0 00 0111111000 0000111111 0
Q ss_pred CCc-------ccccccchHHHHHH------HHHHHHHH---HHHhccccccCCChhhhhChhHHH-HHHHHHHHhhCCCC
Q 005892 101 TDG-------RERGEDDTAFEKQS------ALFALAVS---DIVLINMWCHDIGREQAANKPLLK-TVFQVMMRLFSPRK 163 (671)
Q Consensus 101 ~~~-------~~r~~~~~~~qrQr------v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~-~v~ell~~L~~~~g 163 (671)
.+. .......+.+|+|+ +++|++++ +++++|||+++||+.. +. .+.+++.++.++.|
T Consensus 100 ~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~------~~~~l~~~l~~~~~~~~ 173 (204)
T cd03240 100 CHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN------IEESLAEIIEERKSQKN 173 (204)
T ss_pred echHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH------HHHHHHHHHHHHHhccC
Confidence 010 01122345679997 55666666 9999999999999988 88 89999999876558
Q ss_pred cEEEEEecCCCcccccccchhhhhcCCe
Q 005892 164 TTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 164 ~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
.++|+|||+++.+. .|++++.+.++|+
T Consensus 174 ~~iiiitH~~~~~~-~~d~i~~l~~~~~ 200 (204)
T cd03240 174 FQLIVITHDEELVD-AADHIYRVEKDGR 200 (204)
T ss_pred CEEEEEEecHHHHh-hCCEEEEEeeCCC
Confidence 89999999988664 5888877766553
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.56 E-value=7.3e-15 Score=160.97 Aligned_cols=174 Identities=17% Similarity=0.105 Sum_probs=121.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee---eccCceEe--
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS---QTTKGIWM-- 83 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~---q~~~gi~~-- 83 (671)
-+.+.++++.|.+ ..++.++.+.+ .+|+.+||+|+|||||||+|++|.|-. .|..-++ ....++..
T Consensus 75 dvk~~sls~s~~g---~~l~kd~~~El--~~g~rygLiG~nG~Gkst~L~~i~~~e----~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 75 DVKIESLSLSFHG---VELIKDVTLEL--NRGRRYGLIGPNGSGKSTFLRAIAGRE----VPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred cceeeeeeeccCC---ceeeeeeeEEe--cCCceEEEEcCCCCcHhHHHHHHhcCC----CCCCcccchhhhcccCCCch
Confidence 4899999999965 37889999999 999999999999999999999999987 3443321 00000000
Q ss_pred ---------ccccC--------------CCc--------chhhh---hc-------------cCCCcc---cccccchHH
Q 005892 84 ---------ARCAG--------------IEP--------CTLIM---DL-------------EGTDGR---ERGEDDTAF 113 (671)
Q Consensus 84 ---------~~~~~--------------~~~--------~~~vl---d~-------------~g~~~~---~r~~~~~~~ 113 (671)
..... .+. ...-+ |. .|+... ....+.+++
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 00000 000 00000 00 011110 011233456
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
++.|+++|++|. ++|+|||||++||+.. ...+-+.|.+.-+ .++|+++|+-+.++..|.+++-+.. +
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA------~~wLee~L~k~d~---~~lVi~sh~QDfln~vCT~Ii~l~~-k 295 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEA------IVWLEEYLAKYDR---IILVIVSHSQDFLNGVCTNIIHLDN-K 295 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHH------HHHHHHHHHhccC---ceEEEEecchhhhhhHhhhhheecc-c
Confidence 999999999999 9999999999999998 7777777777532 2899999999999999999998888 7
Q ss_pred e-EEEecCcccc
Q 005892 191 K-IWDSVPKPQA 201 (671)
Q Consensus 191 k-I~~~g~~~e~ 201 (671)
+ +.+.|+.+..
T Consensus 296 kl~~y~Gnydqy 307 (614)
T KOG0927|consen 296 KLIYYEGNYDQY 307 (614)
T ss_pred ceeeecCCHHHH
Confidence 7 6677776553
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.55 E-value=6.2e-15 Score=149.10 Aligned_cols=71 Identities=8% Similarity=-0.039 Sum_probs=59.2
Q ss_pred cchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 109 DDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
..+.+|+||+.+|++++ +++++|||+++||+.. +..+.+.+.++. + +.|+|++||+. .+...|+
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~------~~~l~~~l~~~~-~-~~~~iivs~~~-~~~~~~d 197 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRN------VSIVANYIKERT-K-NAQFIVISLRN-NMFELAD 197 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHH------HHHHHHHHHHHc-C-CCEEEEEECcH-HHHHhCC
Confidence 45677999999999884 6999999999999999 999999999984 3 67899999985 4556788
Q ss_pred chhhhhc
Q 005892 182 EPVLRED 188 (671)
Q Consensus 182 ~~~ll~~ 188 (671)
+++++..
T Consensus 198 ~v~~~~~ 204 (212)
T cd03274 198 RLVGIYK 204 (212)
T ss_pred EEEEEEe
Confidence 8777654
No 382
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=6.7e-15 Score=156.87 Aligned_cols=164 Identities=19% Similarity=0.238 Sum_probs=113.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc---eEe
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IWM 83 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g---i~~ 83 (671)
.|++-+.|+++.|.+. .++...++|++ --...+||+||||.||||||++|.|-+ .|..|....... -|+
T Consensus 584 PPvLGlH~VtFgy~gq--kpLFkkldFGi--DmdSRiaIVGPNGVGKSTlLkLL~Gkl----~P~~GE~RKnhrL~iG~F 655 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQ--KPLFKKLDFGI--DMDSRIAIVGPNGVGKSTLLKLLIGKL----DPNDGELRKNHRLRIGWF 655 (807)
T ss_pred CCeeecccccccCCCC--Cchhhcccccc--cccceeEEECCCCccHHHHHHHHhcCC----CCCcchhhccceeeeech
Confidence 3578899999999654 46667777776 555689999999999999999999999 899997432211 133
Q ss_pred ccccC-----CC-cchhhhhcc--------------CCCcc---cccccchHHHHHHHHHH-HHHH--HHHhccccccCC
Q 005892 84 ARCAG-----IE-PCTLIMDLE--------------GTDGR---ERGEDDTAFEKQSALFA-LAVS--DIVLINMWCHDI 137 (671)
Q Consensus 84 ~~~~~-----~~-~~~~vld~~--------------g~~~~---~r~~~~~~~qrQrv~iA-lAL~--evLlLDEpt~~L 137 (671)
....+ .+ +.-++.... |+... ....+.+++|+-||++| +++. +||||||||++|
T Consensus 656 dQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNL 735 (807)
T KOG0066|consen 656 DQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNL 735 (807)
T ss_pred hhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCc
Confidence 22111 00 111111111 22111 11234567799999998 4444 999999999999
Q ss_pred ChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 138 D~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
|..+ ...+.+.|.+. .-.||+||||-..+....+...|+.+
T Consensus 736 DIES------IDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 736 DIES------IDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVEN 776 (807)
T ss_pred chhh------HHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEcc
Confidence 9998 88888888875 45799999999877655556665555
No 383
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.52 E-value=1.3e-14 Score=145.29 Aligned_cols=139 Identities=13% Similarity=0.054 Sum_probs=92.6
Q ss_pred ccccccccCCc-cEEEEEcCCCCChHHHHHHHh--------cccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccC
Q 005892 30 EVKLSDCGLSY-AVVSIMGPQSSGKSTLLNHLF--------GTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEG 100 (671)
Q Consensus 30 ~v~l~~~g~~g-eivaIlGpNGSGKSTLLn~L~--------Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g 100 (671)
.+++.+ .+| ++++|+|||||||||||++|+ |.. -|..+. ..+.. .+... ...+
T Consensus 19 ~~~~~i--~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~----vp~~~~------~~~~~---~~~~~---~~lg 80 (200)
T cd03280 19 PLDIQL--GENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLP----IPAAEG------SSLPV---FENIF---ADIG 80 (200)
T ss_pred cceEEE--CCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCC----cccccc------ccCcC---ccEEE---EecC
Confidence 345566 556 489999999999999999999 544 233221 10100 00000 0111
Q ss_pred CCc--ccccccchHHHHHHHHHHHHHH--HHHhccccccCCChhhhhChhHHHHHH-HHHHHhhCCCCcEEEEEecCCCc
Q 005892 101 TDG--RERGEDDTAFEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLMFVIRDKTR 175 (671)
Q Consensus 101 ~~~--~~r~~~~~~~qrQrv~iAlAL~--evLlLDEpt~~LD~~~~~~~~~~~~v~-ell~~L~~~~g~TIl~VtHDl~~ 175 (671)
... .......+..|+|++.++.++. +++++|||++++|+.. +..+. .++..+.+ .|.++|++||+.+
T Consensus 81 ~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~------~~~i~~~~l~~l~~-~~~~vi~~tH~~~- 152 (200)
T cd03280 81 DEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVE------GAALAIAILEELLE-RGALVIATTHYGE- 152 (200)
T ss_pred chhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHH------HHHHHHHHHHHHHh-cCCEEEEECCHHH-
Confidence 110 0111233566889888887766 9999999999999987 77775 45666654 4899999999854
Q ss_pred ccccccchhhhhcCCeEEEe
Q 005892 176 TPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 176 ~~~~~~~~~ll~~~GkI~~~ 195 (671)
....++++.++.+ |++..+
T Consensus 153 l~~~~d~~~~l~~-g~l~~~ 171 (200)
T cd03280 153 LKAYAYKREGVEN-ASMEFD 171 (200)
T ss_pred HHHHHhcCCCeEE-EEEEEe
Confidence 4567888888887 998766
No 384
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.51 E-value=2.7e-14 Score=147.78 Aligned_cols=69 Identities=4% Similarity=0.033 Sum_probs=56.8
Q ss_pred ccchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 108 EDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
...+.+|+|++++|++++ +++++||||++||+.. ...+++.+.++. + |.++|+|||+.+... .|
T Consensus 165 ~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~------~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~-~~ 235 (251)
T cd03273 165 TELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSH------TQNIGRMIKTHF-K-GSQFIVVSLKEGMFN-NA 235 (251)
T ss_pred cccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHc-C-CCEEEEEECCHHHHH-hC
Confidence 345677999999999884 7999999999999998 999999999984 3 889999999954443 56
Q ss_pred cchhh
Q 005892 181 LEPVL 185 (671)
Q Consensus 181 ~~~~l 185 (671)
|+++-
T Consensus 236 d~v~~ 240 (251)
T cd03273 236 NVLFR 240 (251)
T ss_pred CEEEE
Confidence 66543
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.51 E-value=8.7e-15 Score=174.17 Aligned_cols=183 Identities=15% Similarity=0.180 Sum_probs=127.4
Q ss_pred EEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccC-
Q 005892 11 QLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG- 88 (671)
Q Consensus 11 ~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~- 88 (671)
-..|+.+....++ -..+|.+|+--. .+|-.+||+|+||||||||||+|+|-. +.|. .++.+.+.|.+.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~--kPG~LTALMG~SGAGKTTLLdvLA~R~------t~G~--I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAF--KPGVLTALMGESGAGKTTLLDVLAGRK------TGGY--IEGDILISGFPKD 858 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEe--cCCceeehhcCCCCchHHHHHHHhcCc------ccce--EEeEEEECCeeCc
Confidence 3344444442222 457889998888 899999999999999999999999964 4443 222333322111
Q ss_pred -----------------------CC---------------------cchhhhhccCCCccc------ccccchHHHHHHH
Q 005892 89 -----------------------IE---------------------PCTLIMDLEGTDGRE------RGEDDTAFEKQSA 118 (671)
Q Consensus 89 -----------------------~~---------------------~~~~vld~~g~~~~~------r~~~~~~~qrQrv 118 (671)
.+ ..-.|++..++.... .+.-....||+|+
T Consensus 859 q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 859 QETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred hhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhcee
Confidence 00 011123333333111 0111344599999
Q ss_pred HHHHHHH----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC-cccccccchhhhhcCCeEE
Q 005892 119 LFALAVS----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 119 ~iAlAL~----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~-~~~~~~~~~~ll~~~GkI~ 193 (671)
.||.=|+ -+|+|||||+|||..+ .-.|++.++++.. .|.|||.++|... .+....|+..+|.+.|+.+
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqa------A~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtV 1011 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQA------AAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTV 1011 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHH------HHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEE
Confidence 9997777 6889999999999998 8999999999987 4999999999995 4555689999999999999
Q ss_pred EecCcccccCCccccchhc
Q 005892 194 DSVPKPQAHMETPLSEFFN 212 (671)
Q Consensus 194 ~~g~~~e~~~~~~l~~~f~ 212 (671)
..|+..+-. ..+-++|.
T Consensus 1012 Y~G~lG~~s--~~li~YFe 1028 (1391)
T KOG0065|consen 1012 YFGPLGENS--SKLIEYFE 1028 (1391)
T ss_pred EecCccccc--HHHHHHHH
Confidence 999987643 33445554
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.51 E-value=1.9e-14 Score=148.76 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=63.1
Q ss_pred cchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 109 DDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
..+.+|+|++++|++++ +++|+|||+++||+.. +..+.+.+.++.++ |.++|+|||+.+.. ..||
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~------~~~l~~~i~~~~~~-g~~vi~isH~~~~~-~~~d 226 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTN------VGKVASYIREQAGP-NFQFIVISLKEEFF-SKAD 226 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHH------HHHHHHHHHHhccC-CcEEEEEECCHHHH-hhCC
Confidence 34567999999999995 6999999999999998 99999999999765 89999999997654 4688
Q ss_pred chhhhhcCCe
Q 005892 182 EPVLREDIQK 191 (671)
Q Consensus 182 ~~~ll~~~Gk 191 (671)
+++++..++.
T Consensus 227 ~i~~~~~~~~ 236 (247)
T cd03275 227 ALVGVYRDQE 236 (247)
T ss_pred eEEEEEecCC
Confidence 8877766443
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.50 E-value=2.4e-14 Score=154.07 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=109.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecccc-
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA- 87 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~- 87 (671)
.++--++.+.|+ .+-..+.-+.. ..|||++++||||-||||+.++|+|.+ .|++|... .-.+.+..+.
T Consensus 342 lv~y~~~~k~~g-----~F~L~V~~G~i-~~gEvigilGpNgiGKTTFvk~LAG~i----kPdeg~~~-~~~vSyKPQyI 410 (591)
T COG1245 342 LVEYPDLKKTYG-----DFKLEVEEGEI-YDGEVIGILGPNGIGKTTFVKLLAGVI----KPDEGSEE-DLKVSYKPQYI 410 (591)
T ss_pred eeecchheeecC-----ceEEEecCCee-ecceEEEEECCCCcchHHHHHHHhccc----cCCCCCCc-cceEeecceee
Confidence 344556666664 34444444432 788999999999999999999999999 89999511 1111111000
Q ss_pred -----C-------------CCcchhhhhc---cCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhh
Q 005892 88 -----G-------------IEPCTLIMDL---EGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQ 141 (671)
Q Consensus 88 -----~-------------~~~~~~vld~---~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~ 141 (671)
+ .....+..++ ..+.. .......+++|.|||++|.+|+ |+.+||||.+-||..+
T Consensus 411 ~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 411 SPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred cCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 0 0000000000 01111 1122345788999999999999 9999999999999999
Q ss_pred hhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhh
Q 005892 142 AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (671)
Q Consensus 142 ~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~l 185 (671)
+-.+..+|++....++.|.++|.||+-.+..++|++++
T Consensus 491 ------R~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~iv 528 (591)
T COG1245 491 ------RIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIV 528 (591)
T ss_pred ------HHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEE
Confidence 99999999999888899999999999877755555433
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.6e-14 Score=155.99 Aligned_cols=174 Identities=14% Similarity=0.079 Sum_probs=113.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc---CCCCCCCCCee----e--ccC
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN---FREMDAFKGRS----Q--TTK 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~---f~~m~p~sG~~----q--~~~ 79 (671)
-|.+.+.+..|+++ .++.+.++.. ..|...||+|+||+|||||||+|+... |++-+...|-. + ...
T Consensus 80 Di~~~~fdLa~G~k---~LL~~a~L~L--~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~ 154 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGK---ILLNKANLTL--SRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLES 154 (582)
T ss_pred ceeeeeeeeeecch---hhhcCCceee--ecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhc
Confidence 37888899999653 6778888888 889999999999999999999999733 22111111210 0 000
Q ss_pred ceEeccccCCC----------cchh-hhhccCCCcccc---cccchHHHHHHHHHHHHHH---HHHhccccccCCChhhh
Q 005892 80 GIWMARCAGIE----------PCTL-IMDLEGTDGRER---GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQA 142 (671)
Q Consensus 80 gi~~~~~~~~~----------~~~~-vld~~g~~~~~r---~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~ 142 (671)
..+.-.....+ .+.. ++--.|+..... ....+++-|.|+++|+|+. |+|||||||+.||..+
T Consensus 155 D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a- 233 (582)
T KOG0062|consen 155 DTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA- 233 (582)
T ss_pred cHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH-
Confidence 00000000000 0000 111223332211 1234567899999999999 9999999999999887
Q ss_pred hChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE-EEecCc
Q 005892 143 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPK 198 (671)
Q Consensus 143 ~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI-~~~g~~ 198 (671)
..-+-+.|... +.|+|+||||-.+....|.+++-+++ -++ ...|.-
T Consensus 234 -----v~WLe~yL~t~----~~T~liVSHDr~FLn~V~tdIIH~~~-~kL~~YkGN~ 280 (582)
T KOG0062|consen 234 -----VAWLENYLQTW----KITSLIVSHDRNFLNTVCTDIIHLEN-LKLDYYKGNY 280 (582)
T ss_pred -----HHHHHHHHhhC----CceEEEEeccHHHHHHHHHHHHHHhh-hhhhhhcCcH
Confidence 66666666653 68999999999999888888887776 455 234543
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=1.5e-13 Score=164.14 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=74.1
Q ss_pred ccchHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 108 EDDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
...+++|+||+.+|++++ +++||||||+|||+.. ...++++|.++.+. |.|||+++|+++.+. .++
T Consensus 827 ~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~------~~~L~~~L~~l~~~-G~TVIvi~H~~~~i~-~aD 898 (924)
T TIGR00630 827 TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDD------IKKLLEVLQRLVDQ-GNTVVVIEHNLDVIK-TAD 898 (924)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-hCC
Confidence 345678999999999998 5999999999999999 99999999999764 999999999998875 588
Q ss_pred chhhhh-----cCCeEEEecCcccc
Q 005892 182 EPVLRE-----DIQKIWDSVPKPQA 201 (671)
Q Consensus 182 ~~~ll~-----~~GkI~~~g~~~e~ 201 (671)
+++++. +.|+|+..|+++++
T Consensus 899 ~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 899 YIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEEecCCccCCCCEEEEeCCHHHh
Confidence 888883 34999999987653
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.47 E-value=9.5e-14 Score=138.98 Aligned_cols=74 Identities=5% Similarity=-0.035 Sum_probs=60.9
Q ss_pred ccchHHHHHHHHHHHHH----H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCC--CCcEEEEEecCCCcccc
Q 005892 108 EDDTAFEKQSALFALAV----S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPL 178 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL----~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~--~g~TIl~VtHDl~~~~~ 178 (671)
...+.+|+|++.+|+++ + +++|+|||+++||+.. +..+.+.|.++..+ .+.|||+++|+++.+..
T Consensus 108 ~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~------~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 108 KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN------RKISTDLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH------HHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence 44577899999999988 3 9999999999999998 99999999988643 24689999999998875
Q ss_pred cccchhhhhc
Q 005892 179 ENLEPVLRED 188 (671)
Q Consensus 179 ~~~~~~ll~~ 188 (671)
. +++.++..
T Consensus 182 ~-d~v~~~~~ 190 (198)
T cd03276 182 S-DDVKVFRM 190 (198)
T ss_pred c-cceeEEEe
Confidence 4 66655544
No 391
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.46 E-value=1.4e-14 Score=135.19 Aligned_cols=101 Identities=27% Similarity=0.297 Sum_probs=67.8
Q ss_pred ccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecc---------------ccCCCc-
Q 005892 28 IKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR---------------CAGIEP- 91 (671)
Q Consensus 28 l~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~---------------~~~~~~- 91 (671)
++++++.+ .+|++++|+||||||||||+++|+|.. +|++|++... +..+.. .....+
T Consensus 1 L~~v~~~i--~~g~~~~i~G~nGsGKStLl~~l~g~~----~~~~G~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 73 (137)
T PF00005_consen 1 LKNVSLEI--KPGEIVAIVGPNGSGKSTLLKALAGLL----PPDSGSILIN-GKDISDIDIEELRRRIGYVPQDPQLFPG 73 (137)
T ss_dssp EEEEEEEE--ETTSEEEEEESTTSSHHHHHHHHTTSS----HESEEEEEET-TEEGTTSHHHHHHHTEEEEESSHCHHTT
T ss_pred CCceEEEE--cCCCEEEEEccCCCccccceeeecccc----cccccccccc-cccccccccccccccccccccccccccc
Confidence 46788888 899999999999999999999999999 7888974221 111110 000000
Q ss_pred -----------chhhhhccCCCc------ccccccchHHHHHHHHHHHHHH---HHHhcccccc
Q 005892 92 -----------CTLIMDLEGTDG------RERGEDDTAFEKQSALFALAVS---DIVLINMWCH 135 (671)
Q Consensus 92 -----------~~~vld~~g~~~------~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~ 135 (671)
...+++..+... .......+.+|+||+.||+|++ +++|+||||+
T Consensus 74 ~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 74 LTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp SBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 000111112111 1112456788999999999999 9999999985
No 392
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.1e-13 Score=153.53 Aligned_cols=172 Identities=13% Similarity=0.175 Sum_probs=124.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+.+++.+++.. ....+++|.. .+|||+||.|-=|||+|=|+++|+|.. ++.+|++...+
T Consensus 262 ~~l~v~~l~~~-------~~~~dvSf~v--r~GEIlGiaGLvGaGRTEl~~~lfG~~----~~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 262 PVLEVRNLSGG-------GKVRDVSFTV--RAGEILGIAGLVGAGRTELARALFGAR----PASSGEILLDGKPVRIRSP 328 (500)
T ss_pred cEEEEecCCCC-------CceeCceeEE--eCCcEEEEeccccCCHHHHHHHHhCCC----cCCCceEEECCEEccCCCH
Confidence 45666666532 2456788888 999999999999999999999999988 67888732111
Q ss_pred ------ceEe-ccc---cC-------CCcchhh-hhc-cC--C-C---------------------cccccccchHHHHH
Q 005892 80 ------GIWM-ARC---AG-------IEPCTLI-MDL-EG--T-D---------------------GRERGEDDTAFEKQ 116 (671)
Q Consensus 80 ------gi~~-~~~---~~-------~~~~~~v-ld~-~g--~-~---------------------~~~r~~~~~~~qrQ 116 (671)
|+-+ ... .+ .+|..+. +.. .+ + + ........+++-+|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 1110 000 00 1111111 110 00 0 0 00111123455889
Q ss_pred HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 117 rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
+|.||+.++ ++|||||||.|+|... +.+|++++.+|.++ |++||++|-++.++...||++++|.+ |+|+
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGA------K~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~-Gri~ 480 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGA------KAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMRE-GRIV 480 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccch------HHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999988 99999999999986 99999999999999989999999998 9999
Q ss_pred EecCccc
Q 005892 194 DSVPKPQ 200 (671)
Q Consensus 194 ~~g~~~e 200 (671)
...+..+
T Consensus 481 ~e~~~~~ 487 (500)
T COG1129 481 GELDREE 487 (500)
T ss_pred EEecccc
Confidence 8777665
No 393
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.45 E-value=1e-13 Score=172.45 Aligned_cols=86 Identities=9% Similarity=-0.022 Sum_probs=75.6
Q ss_pred cchHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 109 DDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
..+.+|+||+.+|++++ +++||||||+|||+.. ...++++|.++.+. |.|||+|||+++.+ ..+++
T Consensus 809 tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~------~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i-~~aDr 880 (1809)
T PRK00635 809 SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD------IKALIYVLQSLTHQ-GHTVVIIEHNMHVV-KVADY 880 (1809)
T ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHH-HhCCE
Confidence 45677999999999995 7999999999999999 99999999999765 99999999999888 67888
Q ss_pred hhhhh-----cCCeEEEecCccccc
Q 005892 183 PVLRE-----DIQKIWDSVPKPQAH 202 (671)
Q Consensus 183 ~~ll~-----~~GkI~~~g~~~e~~ 202 (671)
+++|. +.|+++..|+++++.
T Consensus 881 Vi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 881 VLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEccCCCCCCCEEEEeCCHHHHH
Confidence 88885 238999999987764
No 394
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.42 E-value=3e-13 Score=135.53 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=84.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHH
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS 117 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQr 117 (671)
.+|++++|+|||||||||||++|++..+ .+..|.........+.. .+.....+.... ...........+.++
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~~~~---~~~~g~~~~~~~~~i~~---~dqi~~~~~~~d--~i~~~~s~~~~e~~~ 98 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGLAVL---LAQIGCFVPAESASIPL---VDRIFTRIGAED--SISDGRSTFMAELLE 98 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHHHHH---HHHcCCCccccccccCC---cCEEEEEecCcc--cccCCceeHHHHHHH
Confidence 3568999999999999999999996542 23344211000000000 011110011100 001111112334445
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHH-HHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~e-ll~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
+..+.+.+ +++|+|||++++|+.. ...+.. ++..+.+ .+.++|++||+.+.+. .++++..+.. |++.
T Consensus 99 l~~i~~~~~~~~llllDEp~~gld~~~------~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~-~~~~~~~l~~-~~~~ 169 (202)
T cd03243 99 LKEILSLATPRSLVLIDELGRGTSTAE------GLAIAYAVLEHLLE-KGCRTLFATHFHELAD-LPEQVPGVKN-LHME 169 (202)
T ss_pred HHHHHHhccCCeEEEEecCCCCCCHHH------HHHHHHHHHHHHHh-cCCeEEEECChHHHHH-HhhcCCCeEE-EEEE
Confidence 55555554 9999999999999976 666654 4455544 4899999999987765 4566666666 7777
Q ss_pred EecCc
Q 005892 194 DSVPK 198 (671)
Q Consensus 194 ~~g~~ 198 (671)
..+..
T Consensus 170 ~~~~~ 174 (202)
T cd03243 170 ELITT 174 (202)
T ss_pred EEecC
Confidence 66654
No 395
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.42 E-value=3e-13 Score=161.74 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=76.0
Q ss_pred ccchHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 108 EDDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
...+++|+||+.+|++++ +++|||||++|||+.. ...++++|.++.+. |.|||+|+|+++.+. .++
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~------~~~L~~~L~~l~~~-G~TVIiitH~~~~i~-~aD 900 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED------IRKLLEVLHRLVDK-GNTVVVIEHNLDVIK-TAD 900 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCC
Confidence 345678999999999998 3999999999999998 99999999999754 999999999998875 588
Q ss_pred chhhhh-----cCCeEEEecCcccccC
Q 005892 182 EPVLRE-----DIQKIWDSVPKPQAHM 203 (671)
Q Consensus 182 ~~~ll~-----~~GkI~~~g~~~e~~~ 203 (671)
+++.+. +.|+|+..|++.++..
T Consensus 901 ~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 901 WIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred EEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 888883 3499999999887754
No 396
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.39 E-value=2e-13 Score=132.16 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=84.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHHH
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 119 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~ 119 (671)
+.++.|+|||||||||+++.+..... ...|......++............++... ...+.+|+|++.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~i~~~---------~~lS~G~~~~~~ 87 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALG----GAQSATRRRSGVKAGCIVAAVSAELIFTR---------LQLSGGEKELSA 87 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH----hcchhhhccCcccCCCcceeeEEEEehhe---------eeccccHHHHHH
Confidence 46999999999999999999876652 33332111101100000000000000000 113566999999
Q ss_pred HHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhh
Q 005892 120 FALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (671)
Q Consensus 120 iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll 186 (671)
++++++ +++++|||++++|+.. ...+.+.+.++..+ |.++|++||+.+.+. .+++++.+
T Consensus 88 la~~L~~~~~~~~~llllDEp~~gld~~~------~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l 153 (162)
T cd03227 88 LALILALASLKPRPLYILDEIDRGLDPRD------GQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHI 153 (162)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEE
Confidence 999997 6999999999999998 88999999888766 899999999998765 35555544
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.38 E-value=4.1e-13 Score=132.25 Aligned_cols=135 Identities=14% Similarity=0.093 Sum_probs=86.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-cc--ccCCC--cchhhhh--ccCCCcccccccchHHH
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-AR--CAGIE--PCTLIMD--LEGTDGRERGEDDTAFE 114 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~-~~--~~~~~--~~~~vld--~~g~~~~~r~~~~~~~q 114 (671)
+.+|+||||||||++|.+|.-..... ....++ .....+ .. ..+.. ...+.++ ..-++..+..+..+.+|
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge 99 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGK-AAKLRR---GSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGE 99 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcc-cccccC---cchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHH
Confidence 89999999999999999986544100 011111 000000 00 00000 0000001 11112222233467889
Q ss_pred HHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh
Q 005892 115 KQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (671)
Q Consensus 115 rQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~ 187 (671)
+|++.+|++++ +++++|||+++||+.. ...+.+.+.++.+. |.++|++||+.+.+. .+++++.+.
T Consensus 100 ~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~------~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-~adrvi~i~ 171 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTN------RRRVSDMIKEMAKH-TSQFIVITLKKEMFE-NADKLIGVL 171 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCeEEEEE
Confidence 99999999884 8999999999999998 89999999998754 899999999987654 577766554
Q ss_pred c
Q 005892 188 D 188 (671)
Q Consensus 188 ~ 188 (671)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 4
No 398
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.37 E-value=2.6e-12 Score=145.29 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=112.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc---eEec
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IWMA 84 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g---i~~~ 84 (671)
..|.++|++..-+.. ...+.+.++.+ .+|+.+-|.||||||||||+|+|+|+= +--+|++....+ .+++
T Consensus 391 ~~i~~~nl~l~~p~~--~~ll~~l~~~v--~~G~~llI~G~SG~GKTsLlRaiaGLW----P~g~G~I~~P~~~~~lflp 462 (604)
T COG4178 391 HGITLENLSLRTPDG--QTLLSELNFEV--RPGERLLITGESGAGKTSLLRALAGLW----PWGSGRISMPADSALLFLP 462 (604)
T ss_pred ceeEEeeeeEECCCC--Ceeeccceeee--CCCCEEEEECCCCCCHHHHHHHHhccC----ccCCCceecCCCCceEEec
Confidence 579999999998653 47889999999 999999999999999999999999998 445676433322 2222
Q ss_pred cccCCC--------------------cchhhhhccCCCccc------c--cccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 85 RCAGIE--------------------PCTLIMDLEGTDGRE------R--GEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 85 ~~~~~~--------------------~~~~vld~~g~~~~~------r--~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
..+... ...-++...|++.-. . ....+.+|+||++||+.+. ++++|||-
T Consensus 463 Q~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 211100 011122233332110 0 1234567999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
|++||+.. ...+++++++-. .++|+|-|.|....-.
T Consensus 543 TsALDe~~------e~~l~q~l~~~l--p~~tvISV~Hr~tl~~ 578 (604)
T COG4178 543 TSALDEET------EDRLYQLLKEEL--PDATVISVGHRPTLWN 578 (604)
T ss_pred hhccChHH------HHHHHHHHHhhC--CCCEEEEeccchhhHH
Confidence 99999998 888999888743 4899999999876544
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.35 E-value=4.3e-13 Score=144.54 Aligned_cols=137 Identities=20% Similarity=0.136 Sum_probs=95.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc----------CceEec--------cc------c------
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----------KGIWMA--------RC------A------ 87 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~----------~gi~~~--------~~------~------ 87 (671)
.+|.++||+||||-||||.+|+|+|.+ .|.-|+.... +|-.++ +. +
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel----~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGEL----KPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCcc----ccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 688999999999999999999999999 7887862110 000000 00 0
Q ss_pred -----C-----------CCcchhhhhccCCCccc--ccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChh
Q 005892 88 -----G-----------IEPCTLIMDLEGTDGRE--RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKP 146 (671)
Q Consensus 88 -----~-----------~~~~~~vld~~g~~~~~--r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~ 146 (671)
+ ......+.+..++.... .....++++-||++||.+++ ++.++|||++-||..+
T Consensus 174 Pk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~q----- 248 (591)
T COG1245 174 PKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQ----- 248 (591)
T ss_pred HHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHH-----
Confidence 0 00011111222222111 11345677999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhh
Q 005892 147 LLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (671)
Q Consensus 147 ~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~l 185 (671)
+-.+..++++|.+. ++++|+|.||+.....++|-+.+
T Consensus 249 -Rl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI 285 (591)
T COG1245 249 -RLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHI 285 (591)
T ss_pred -HHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEE
Confidence 99999999999876 89999999999876655554433
No 400
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=7.6e-13 Score=144.64 Aligned_cols=170 Identities=17% Similarity=0.146 Sum_probs=120.9
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~ 86 (671)
.|.|++.++++.|.+..- .+...++++. ..-..++++|+||+||||+++++.|-. .|..|-.-......+...
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~~~~~~~d~--e~~sRi~~vg~ng~gkst~lKi~~~~l----~~~rgi~~~~~r~ri~~f 432 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QWRKQLGLDR--ESDSRISRVGENGDGKSTLLKILKGDL----TPTRGIVGRHPRLRIKYF 432 (582)
T ss_pred CCeeEEEeeeccCCCcch-hhhhccCCcc--chhhhhheeccCchhHHHHHHHHhccC----Ccccceeeecccceecch
Confidence 357999999999976422 6778888887 777789999999999999999999976 688774211111111100
Q ss_pred c--C---CC-------------------cchhhhhccCCCccc---ccccchHHHHHHHHHHHHHH---HHHhccccccC
Q 005892 87 A--G---IE-------------------PCTLIMDLEGTDGRE---RGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (671)
Q Consensus 87 ~--~---~~-------------------~~~~vld~~g~~~~~---r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~ 136 (671)
. . .+ .+.--+...|+++.. .....+++|+-||+||.... .+|+|||||+-
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNh 512 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNH 512 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcc
Confidence 0 0 00 000011112333221 11224567999999997777 89999999999
Q ss_pred CChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEE
Q 005892 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 137 LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~ 194 (671)
||..+ ...+.+.|+.. +-.||+||||.+++...|..+.+..+ |++..
T Consensus 513 LD~ds------l~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~-g~vt~ 559 (582)
T KOG0062|consen 513 LDRDS------LGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVED-GKVTP 559 (582)
T ss_pred ccHHH------HHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcC-CcEEe
Confidence 99998 88888888775 34799999999999999999998888 98864
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.33 E-value=1.4e-12 Score=130.76 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=75.4
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 105 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~ 105 (671)
.+..++++.. |++++|+||||||||||||+|+|..+ + ...|.........++ .........+.|....
T Consensus 15 ~v~n~i~l~~----g~~~~ltGpNg~GKSTllr~i~~~~~--l-~~~G~~v~a~~~~~q-~~~l~~~~~~~d~l~~---- 82 (199)
T cd03283 15 RVANDIDMEK----KNGILITGSNMSGKSTFLRTIGVNVI--L-AQAGAPVCASSFELP-PVKIFTSIRVSDDLRD---- 82 (199)
T ss_pred eecceEEEcC----CcEEEEECCCCCChHHHHHHHHHHHH--H-HHcCCEEecCccCcc-cceEEEeccchhcccc----
Confidence 4556666654 58999999999999999999998762 0 123431111111111 0000000001111000
Q ss_pred ccccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHH-HHHHhhCCCCcEEEEEecCCCccc
Q 005892 106 RGEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 106 r~~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~e-ll~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
+......+.+++.-++..+ +++|+|||++|+|+.. ...+.. ++..+.+ .|.++|++||+++.+.
T Consensus 83 -~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~------~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~ 152 (199)
T cd03283 83 -GISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRE------RQAASAAVLKFLKN-KNTIGIISTHDLELAD 152 (199)
T ss_pred -ccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHH------HHHHHHHHHHHHHH-CCCEEEEEcCcHHHHH
Confidence 0000111233333333332 7999999999999987 665544 5677764 4899999999998765
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.30 E-value=2.4e-12 Score=130.39 Aligned_cols=76 Identities=5% Similarity=0.044 Sum_probs=58.0
Q ss_pred cchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCC-cEEEEEecCCCcccccc
Q 005892 109 DDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK-TTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g-~TIl~VtHDl~~~~~~~ 180 (671)
..+.+|+|++.++.+++ +++++|||+++||+.. ...+++.+.++.++.| .++|++||++......+
T Consensus 126 ~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~------~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 126 HQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN------ERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred hccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH------HHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 44567999887765432 8999999999999998 9999999999865434 68999999986665555
Q ss_pred c--chhhhhcCCe
Q 005892 181 L--EPVLREDIQK 191 (671)
Q Consensus 181 ~--~~~ll~~~Gk 191 (671)
+ +++++.+ |+
T Consensus 200 ~~~~v~~l~~-g~ 211 (213)
T cd03277 200 EKMTVLCVYN-GP 211 (213)
T ss_pred CceEEEEEec-Cc
Confidence 4 4555555 54
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=1.2e-12 Score=133.30 Aligned_cols=150 Identities=14% Similarity=0.086 Sum_probs=94.3
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 105 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~ 105 (671)
.+..+++++. .++++++|.||||+||||||++++=..+ | ...|-........+. ....+++..|+....
T Consensus 18 ~v~~~~~~~~--~~~~~~~l~G~n~~GKstll~~i~~~~~--l-a~~g~~vpa~~~~~~------~~~~il~~~~l~d~~ 86 (222)
T cd03285 18 FIPNDVTLTR--GKSRFLIITGPNMGGKSTYIRQIGVIVL--M-AQIGCFVPCDSADIP------IVDCILARVGASDSQ 86 (222)
T ss_pred eEEeeEEEee--cCCeEEEEECCCCCChHHHHHHHHHHHH--H-HHhCCCcCcccEEEe------ccceeEeeeccccch
Confidence 4667788887 7889999999999999999999763321 1 122210000000010 001112223333222
Q ss_pred ccccchHHHHHHHHHHHHH--H---HHHhcccc---ccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 106 RGEDDTAFEKQSALFALAV--S---DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 106 r~~~~~~~qrQrv~iAlAL--~---evLlLDEp---t~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
....+.|+++++.++.++ + +++|+||| |+++|+.. +. ..++..+.+..|.++|++||+ .++.
T Consensus 87 -~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~------~~--~~il~~l~~~~~~~vlisTH~-~el~ 156 (222)
T cd03285 87 -LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG------LA--WAIAEYIATQIKCFCLFATHF-HELT 156 (222)
T ss_pred -hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH------HH--HHHHHHHHhcCCCeEEEEech-HHHH
Confidence 234468888888888888 4 99999999 88899876 32 222233333347899999996 5555
Q ss_pred ccccchhhhhcCCeEEEecC
Q 005892 178 LENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 178 ~~~~~~~ll~~~GkI~~~g~ 197 (671)
..|+++..+.+ |++...+.
T Consensus 157 ~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 157 ALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred HHhhcCCCeEE-EEEEEEEe
Confidence 67888777777 88877654
No 404
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=5.4e-12 Score=126.97 Aligned_cols=135 Identities=18% Similarity=0.134 Sum_probs=80.2
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCc-c
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDG-R 104 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~-~ 104 (671)
.+..++++.. .+|++++|+||||+|||||+++|+|+.+ -...|-... .........+.+.. ..+... .
T Consensus 17 ~v~~~~~~~~--~~~~~~~l~G~n~~GKstll~~i~~~~~---la~~G~~vp---a~~~~l~~~d~I~~---~~~~~d~~ 85 (204)
T cd03282 17 FIPNDIYLTR--GSSRFHIITGPNMSGKSTYLKQIALLAI---MAQIGCFVP---AEYATLPIFNRLLS---RLSNDDSM 85 (204)
T ss_pred EEEeeeEEee--CCCcEEEEECCCCCCHHHHHHHHHHHHH---HHHcCCCcc---hhhcCccChhheeE---ecCCcccc
Confidence 5677888888 7889999999999999999999997752 112231100 00000000111111 111111 1
Q ss_pred ccc-ccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHH-HHHHHHhhCCCCcEEEEEecCCCccccc
Q 005892 105 ERG-EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV-FQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (671)
Q Consensus 105 ~r~-~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v-~ell~~L~~~~g~TIl~VtHDl~~~~~~ 179 (671)
..+ ......++ ++..+.+++ +++++|||++|+|+.. ...+ ..++..+.+. |.++|++||+.+.+...
T Consensus 86 ~~~~S~fs~e~~-~~~~il~~~~~~~lvllDE~~~gt~~~~------~~~l~~~il~~l~~~-~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 86 ERNLSTFASEMS-ETAYILDYADGDSLVLIDELGRGTSSAD------GFAISLAILECLIKK-ESTVFFATHFRDIAAIL 157 (204)
T ss_pred chhhhHHHHHHH-HHHHHHHhcCCCcEEEeccccCCCCHHH------HHHHHHHHHHHHHhc-CCEEEEECChHHHHHHh
Confidence 111 11122344 444555555 9999999999999865 3333 3455555544 89999999999877643
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.20 E-value=1.5e-11 Score=131.28 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=109.2
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCC----CCCCCCCeeeccC---ceEeccccC--CC-----
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR----EMDAFKGRSQTTK---GIWMARCAG--IE----- 90 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~----~m~p~sG~~q~~~---gi~~~~~~~--~~----- 90 (671)
..++.++|+.+ .+|++++|+|+|||||||||++|.|..+. ..+|++|.+.... ...+.+..- ..
T Consensus 396 ryvlr~vNL~i--kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 396 RYVLRNLNLEI--KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeeeceeeEe--cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHH
Confidence 35788999999 99999999999999999999999998743 2457788632111 111111100 00
Q ss_pred --------c---chhhhhccCCCcc----cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHH
Q 005892 91 --------P---CTLIMDLEGTDGR----ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVF 152 (671)
Q Consensus 91 --------~---~~~vld~~g~~~~----~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ 152 (671)
+ ..-++...|+... ..-.+.+.+|+.|+-+|..++ .+++.||..+-||+.+ ...+.
T Consensus 474 ehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T------A~rVA 547 (593)
T COG2401 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT------AVRVA 547 (593)
T ss_pred HHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH------HHHHH
Confidence 0 1112222233221 111344567999999999999 7999999999999988 88888
Q ss_pred HHHHHhhCCCCcEEEEEecCCCcccccc-cchhhhhc
Q 005892 153 QVMMRLFSPRKTTLMFVIRDKTRTPLEN-LEPVLRED 188 (671)
Q Consensus 153 ell~~L~~~~g~TIl~VtHDl~~~~~~~-~~~~ll~~ 188 (671)
.-+.++.++.|.|+++|||..+....+. |..+++..
T Consensus 548 rkiselaRe~giTlivvThrpEv~~AL~PD~li~vgY 584 (593)
T COG2401 548 RKISELAREAGITLIVVTHRPEVGNALRPDTLILVGY 584 (593)
T ss_pred HHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeec
Confidence 8888998888999999999998876553 34444444
No 406
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.19 E-value=2e-11 Score=123.89 Aligned_cols=150 Identities=12% Similarity=0.082 Sum_probs=79.4
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccc
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRER 106 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r 106 (671)
+..+++++. +.++++|+|||||||||||++++++.+ -...|.........+.. .... ..++...+.
T Consensus 20 v~n~~~l~~---~~~~~~l~Gpn~sGKstllr~i~~~~~---l~~~g~~vp~~~~~i~~---~~~i-----~~~~~~~~~ 85 (216)
T cd03284 20 VPNDTELDP---ERQILLITGPNMAGKSTYLRQVALIAL---LAQIGSFVPASKAEIGV---VDRI-----FTRIGASDD 85 (216)
T ss_pred EeeeEEecC---CceEEEEECCCCCChHHHHHHHHHHHH---HhccCCeeccccceecc---eeeE-----eccCCchhh
Confidence 555666665 238999999999999999999987652 12334211100000000 0000 011111110
Q ss_pred c-ccchHHHHHHHHHHHHHH-----HHHhcccc---ccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 107 G-EDDTAFEKQSALFALAVS-----DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 107 ~-~~~~~~qrQrv~iAlAL~-----evLlLDEp---t~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
. ...+.|......++.++. .++|+||| |+++|... . ...++..+.+..+.++|++||+.+...
T Consensus 86 ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~------~--~~~il~~l~~~~~~~vi~~TH~~~l~~ 157 (216)
T cd03284 86 LAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS------I--AWAIVEYLHEKIGAKTLFATHYHELTE 157 (216)
T ss_pred hccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH------H--HHHHHHHHHhccCCcEEEEeCcHHHHH
Confidence 0 011334444444444443 89999999 66677543 1 222333333323789999999975433
Q ss_pred ccccchhhhhcCCeEEEecCccc
Q 005892 178 LENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 178 ~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
.+++...+.+ |++...+.+.+
T Consensus 158 -l~~~~~~v~~-~~~~~~~~~~~ 178 (216)
T cd03284 158 -LEGKLPRVKN-FHVAVKEKGGG 178 (216)
T ss_pred -HhhcCCCeEE-EEEEEEeeCCe
Confidence 4555444445 77766555443
No 407
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.16 E-value=5.7e-11 Score=121.25 Aligned_cols=134 Identities=47% Similarity=0.648 Sum_probs=86.8
Q ss_pred cCCccEEEEEcCCCCChHHHHHHHhcc--cCCCCCCCCCeeeccCceEeccccCC---CcchhhhhccCCCcccccccch
Q 005892 37 GLSYAVVSIMGPQSSGKSTLLNHLFGT--NFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDT 111 (671)
Q Consensus 37 g~~geivaIlGpNGSGKSTLLn~L~Gl--~f~~m~p~sG~~q~~~gi~~~~~~~~---~~~~~vld~~g~~~~~r~~~~~ 111 (671)
+.+..+|+|+|+.++|||||||.|+|. .|+++.. ..++|+|+|+...+.. ....+++|.+|+...++.. .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~---~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~--~ 78 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDT---SQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE--F 78 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCC---CCCCccceEEEeccccCCCcceEEEEecCCcCccccCc--h
Confidence 356679999999999999999999999 7765533 2458999999865432 4567889999999887653 1
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCChhhhhChhHHHHH----HHHHHHhhCCCCcEEEEEecCCCc
Q 005892 112 AFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTV----FQVMMRLFSPRKTTLMFVIRDKTR 175 (671)
Q Consensus 112 ~~qrQrv~iAlAL~evLlLDEpt~~LD~~~~~~~~~~~~v----~ell~~L~~~~g~TIl~VtHDl~~ 175 (671)
....+..+++..+++++|++-+....+........+.+.. ..............+++|.+|...
T Consensus 79 ~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 79 EDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred hhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 2233344444445799999988654332221111122211 011112223457889999999854
No 408
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.16 E-value=5.4e-11 Score=120.51 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=77.4
Q ss_pred ccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCccc--
Q 005892 28 IKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE-- 105 (671)
Q Consensus 28 l~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~-- 105 (671)
-.++.++. ..+.+++|.||||+||||||+.|..... -+..|.........+.. .+... ..+....
T Consensus 19 pnd~~l~~--~~~~~~~itGpNg~GKStlLk~i~~~~~---la~~G~~v~a~~~~~~~---~d~i~-----~~l~~~~si 85 (213)
T cd03281 19 PNDTEIGG--GGPSIMVITGPNSSGKSVYLKQVALIVF---LAHIGSFVPADSATIGL---VDKIF-----TRMSSRESV 85 (213)
T ss_pred cceEEecC--CCceEEEEECCCCCChHHHHHHHHHHHH---HHhCCCeeEcCCcEEee---eeeee-----eeeCCccCh
Confidence 33444443 2247899999999999999999984320 14455321111111110 00000 0111111
Q ss_pred -ccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHH-HHHHHHhhCC--CCcEEEEEecCCCcccc
Q 005892 106 -RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV-FQVMMRLFSP--RKTTLMFVIRDKTRTPL 178 (671)
Q Consensus 106 -r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v-~ell~~L~~~--~g~TIl~VtHDl~~~~~ 178 (671)
........+-+++.++++++ .++|+|||++|+|+.. ...+ ..++..+.+. .+.++|++||+++.+..
T Consensus 86 ~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~------~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 86 SSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTED------GAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred hhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH------HHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 11111233778888888877 9999999999999864 3333 4566666543 24689999999987664
No 409
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.14 E-value=3.3e-11 Score=119.31 Aligned_cols=123 Identities=16% Similarity=0.078 Sum_probs=68.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHHHHH
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 121 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iA 121 (671)
++.|.||||+||||||+.++-..+ -+..|.........+... +.. +...+....... ....|.++...++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~---la~~G~~v~a~~~~~~~~---d~i---l~~~~~~d~~~~-~~s~fs~~~~~l~ 70 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI---MAQIGSFVPAESAELPVF---DRI---FTRIGASDSLAQ-GLSTFMVEMKETA 70 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH---HHHhCCCeeehheEeccc---ceE---EEEeCCCCchhc-cccHHHHHHHHHH
Confidence 368999999999999999983221 244553211111111110 011 111122111111 1123323322344
Q ss_pred HHHH-----HHHhccccccCCChhhhhChhHHHHHH-HHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 122 LAVS-----DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 122 lAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~-ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
.++. +++|+|||++|+|+.. ...+. .++..+.+..+.++|++||+++. ...++
T Consensus 71 ~~l~~~~~~~llllDEp~~g~d~~~------~~~~~~~~l~~l~~~~~~~iii~TH~~~l-~~~~~ 129 (185)
T smart00534 71 NILKNATENSLVLLDELGRGTSTYD------GVAIAAAVLEYLLEKIGALTLFATHYHEL-TKLAD 129 (185)
T ss_pred HHHHhCCCCeEEEEecCCCCCCHHH------HHHHHHHHHHHHHhcCCCeEEEEecHHHH-HHHhh
Confidence 4443 7999999999999986 55554 44555544348899999999954 33444
No 410
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.07 E-value=2.6e-10 Score=125.02 Aligned_cols=178 Identities=14% Similarity=0.148 Sum_probs=132.4
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~ 86 (671)
.+.++++|++..=... ...+.+++|.+ ..|||+||.|-.|-|-+-|+.+|+|+. +|.+|++...+.-...+.
T Consensus 255 ~~vL~V~~L~v~~~~~--~~~v~~vs~~V--r~GEIvGIAGV~GNGQ~eL~eaisGlr----~~~~G~I~l~G~~v~~~~ 326 (501)
T COG3845 255 EVVLEVEDLSVKDRRG--VTAVKDVSFEV--RAGEIVGIAGVAGNGQSELVEAISGLR----KPASGRILLNGKDVLGRL 326 (501)
T ss_pred CeEEEEeeeEeecCCC--CceeeeeeeEE--ecCcEEEEEecCCCCHHHHHHHHhCCC----ccCCceEEECCEeccccC
Confidence 4579999999876432 35788899999 999999999999999999999999998 678887432211000000
Q ss_pred c-------C-------------------CCcchhh----------------------------hhccCCCcccccccchH
Q 005892 87 A-------G-------------------IEPCTLI----------------------------MDLEGTDGRERGEDDTA 112 (671)
Q Consensus 87 ~-------~-------------------~~~~~~v----------------------------ld~~g~~~~~r~~~~~~ 112 (671)
. + .+|..+- +|+..-.........++
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSG 406 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSG 406 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCC
Confidence 0 0 0000000 00000011111122345
Q ss_pred HHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcC
Q 005892 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (671)
Q Consensus 113 ~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~ 189 (671)
+..|++.+|+=+. ++||+..||.|||... ...+.+.|.++.+. |+.||+|+-|++++..+||++.++.+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA------~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi~~- 478 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGA------IEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYE- 478 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHH------HHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeeeeC-
Confidence 5899999999999 9999999999999988 88999999999765 99999999999999999999999999
Q ss_pred CeEEEecCccc
Q 005892 190 QKIWDSVPKPQ 200 (671)
Q Consensus 190 GkI~~~g~~~e 200 (671)
|+|+...++++
T Consensus 479 Gri~~~~~~~~ 489 (501)
T COG3845 479 GRIVGIVPPEE 489 (501)
T ss_pred Cceeccccccc
Confidence 99999888765
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=8e-11 Score=126.18 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=104.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccC
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~ 88 (671)
-|.|+|.+.+-.+. .+.-+.++.+ .-|..+|++||||-||||||++|+.--++. +|.-.-..|...+.....+.
T Consensus 264 DIKiEnF~ISA~Gk---~LFvnA~L~I--v~GRRYGLVGPNG~GKTTLLkHIa~RalaI-PpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQGK---LLFVNASLTI--VYGRRYGLVGPNGMGKTTLLKHIAARALAI-PPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeecccc---eeeeccceEE--EecceecccCCCCCchHHHHHHHHhhhccC-CCCCceEeeeeeeeecCcHH
Confidence 47888877766442 4555667777 778899999999999999999999755432 23322111222221111100
Q ss_pred CC--------------------------------cchhhh---hccCCCccc-c-----------------c-ccchHHH
Q 005892 89 IE--------------------------------PCTLIM---DLEGTDGRE-R-----------------G-EDDTAFE 114 (671)
Q Consensus 89 ~~--------------------------------~~~~vl---d~~g~~~~~-r-----------------~-~~~~~~q 114 (671)
.. ..--+. .-.|.+..+ + . ...+++-
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGW 417 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGW 417 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCce
Confidence 00 000000 001111111 0 0 0112336
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCe
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~Gk 191 (671)
|.||.+|+||. -+|+|||||+.||... .--+-+.|.-. ++|+++|+||-.+....|.+++-+.+ .+
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNA------VIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~-qk 486 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNA------VIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDN-QK 486 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccce------eeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhh-hh
Confidence 78999999999 7899999999999876 44444444443 57999999999999989999888776 55
Q ss_pred EE
Q 005892 192 IW 193 (671)
Q Consensus 192 I~ 193 (671)
+-
T Consensus 487 Lh 488 (807)
T KOG0066|consen 487 LH 488 (807)
T ss_pred hh
Confidence 53
No 412
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.04 E-value=2.9e-10 Score=118.99 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=75.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCC--C-cchhhhhccCCCccccc---ccchHHH
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--E-PCTLIMDLEGTDGRERG---EDDTAFE 114 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~--~-~~~~vld~~g~~~~~r~---~~~~~~q 114 (671)
.-++|+||||||||||+++|+|+. .|.+|++ ++.+.... + ..-......+.+....+ .......
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i------~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL----STGISQL------GLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc----CCCCceE------EECCEEeecchhHHHHHHHhcccccccccccccccccch
Confidence 468999999999999999999999 7888863 33221110 0 00111111111111111 0111112
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCc--c-----------cc
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR--T-----------PL 178 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~--~-----------~~ 178 (671)
+...++.+..+ +++++|||.. ...+..++..+. .|.++|+++|+... + ..
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~------------~e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~ 247 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGR------------EEDVEALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENE 247 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCc------------HHHHHHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcC
Confidence 23333444443 9999999853 334445555543 49999999998654 3 23
Q ss_pred cccchhhhhcCCeEEEecCccccc
Q 005892 179 ENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 179 ~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
.++++++|.+ |+ ..|++.+++
T Consensus 248 ~~~r~i~L~~-~~--~~g~~~~i~ 268 (270)
T TIGR02858 248 AFERYVVLSR-RK--GPGTVEAVY 268 (270)
T ss_pred ceEEEEEEec-CC--CCCceeecc
Confidence 4566666655 44 455554443
No 413
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.04 E-value=2.9e-10 Score=115.88 Aligned_cols=134 Identities=14% Similarity=0.173 Sum_probs=78.8
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 105 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~ 105 (671)
.+..++++.. .+|++++|+||||+||||+|++++|..+ .+..|.........+.. .+.+.. . .+.....
T Consensus 19 ~v~n~i~~~~--~~g~~~~itG~N~~GKStll~~i~~~~~---la~~G~~v~a~~~~~~~---~~~i~~--~-~~~~d~~ 87 (222)
T cd03287 19 FVPNDIHLSA--EGGYCQIITGPNMGGKSSYIRQVALITI---MAQIGSFVPASSATLSI---FDSVLT--R-MGASDSI 87 (222)
T ss_pred EEEEeEEEEe--cCCcEEEEECCCCCCHHHHHHHHHHHHH---HHhCCCEEEcCceEEec---cceEEE--E-ecCcccc
Confidence 4566778887 7889999999999999999999999442 46777532111111110 001100 0 1111111
Q ss_pred ccccchHH--HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHH-HHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 106 RGEDDTAF--EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKT-VFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 106 r~~~~~~~--qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~-v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
. ...+.| +-+++.-.+..+ .++|+|||.+|.++.. ... ...++..+.+..+.++|++||+++.+.
T Consensus 88 ~-~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d------~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 88 Q-HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHD------GIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred c-cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhh------HHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 1 112344 333443333333 8999999999888654 333 234444544434889999999998754
No 414
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.99 E-value=2.5e-09 Score=118.82 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=104.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc-----CceE
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-----KGIW 82 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~-----~gi~ 82 (671)
.+|++++++..-+.. ...+..++++.+ .+|+-+.|.||||||||+|||.|+|+- +-.+|+.+.. ++++
T Consensus 432 n~i~~e~v~l~tPt~-g~~lie~Ls~~V--~~g~~LLItG~sG~GKtSLlRvlggLW----p~~~G~l~k~~~~~~~~lf 504 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN-GDLLIENLSLEV--PSGQNLLITGPSGCGKTSLLRVLGGLW----PSTGGKLTKPTDGGPKDLF 504 (659)
T ss_pred ceEEeeeeeecCCCC-CceeeeeeeeEe--cCCCeEEEECCCCCchhHHHHHHhccc----ccCCCeEEecccCCCCceE
Confidence 479999999888653 345777899999 999999999999999999999999998 4467764311 1122
Q ss_pred e-ccccC------CC-------------------cchhhhhcc----------CCCcc---cccccchHHHHHHHHHHHH
Q 005892 83 M-ARCAG------IE-------------------PCTLIMDLE----------GTDGR---ERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 83 ~-~~~~~------~~-------------------~~~~vld~~----------g~~~~---~r~~~~~~~qrQrv~iAlA 123 (671)
+ +..+. .+ .+...++.. |++.. .-....+.+|+||+++||-
T Consensus 505 flPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARL 584 (659)
T KOG0060|consen 505 FLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARL 584 (659)
T ss_pred EecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHH
Confidence 2 11110 00 111111111 22210 0112235669999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
+. ++-+|||-|++++... -..+.+.+++ .|+|.|=|.|.-....
T Consensus 585 fy~kPk~AiLDE~TSAv~~dv------E~~~Yr~~r~----~giT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 585 FYHKPKFAILDECTSAVTEDV------EGALYRKCRE----MGITFISVGHRKSLWK 631 (659)
T ss_pred HhcCCceEEeechhhhccHHH------HHHHHHHHHH----cCCeEEEeccHHHHHh
Confidence 98 9999999999998765 4445554444 5999999999887654
No 415
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=9.1e-10 Score=115.81 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 110 DTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 110 ~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
.+++|+||+.+|++++ +++++|||+++||+.. ...+.+.+.++.+ +.|+|++||++... ..+++
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~------~~~l~~~l~~~~~--~~tii~isH~~~~~-~~~d~ 241 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEV------AQAVGKKLKELSR--SHQVLCITHLPQVA-AMADN 241 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEechHHHH-HhcCc
Confidence 3567999999997532 8999999999999998 9999999999853 78999999999754 57888
Q ss_pred hhhhhc
Q 005892 183 PVLRED 188 (671)
Q Consensus 183 ~~ll~~ 188 (671)
++++.+
T Consensus 242 ~~~l~~ 247 (276)
T cd03241 242 HFLVEK 247 (276)
T ss_pred EEEEEE
Confidence 777766
No 416
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.92 E-value=3.4e-09 Score=121.72 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchh
Q 005892 111 TAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ 184 (671)
+++|-||+-+|.=|. -+.||||||+||-... .+.++++|.+|... |-|||+|.|+++.+. .||-++
T Consensus 824 SGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~D------i~kLl~VL~rLvd~-GnTViVIEHNLdVIk-~AD~II 895 (935)
T COG0178 824 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDD------IKKLLEVLHRLVDK-GNTVIVIEHNLDVIK-TADWII 895 (935)
T ss_pred cchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecccceEe-ecCEEE
Confidence 344999999999998 6889999999998887 99999999999875 999999999999887 245444
Q ss_pred hh-----hcCCeEEEecCcccccC
Q 005892 185 LR-----EDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 185 ll-----~~~GkI~~~g~~~e~~~ 203 (671)
=+ ...|+|++.|+|+++.+
T Consensus 896 DLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 896 DLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EcCCCCCCCCceEEEecCHHHHHh
Confidence 33 34589999999998764
No 417
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.91 E-value=3.9e-09 Score=115.94 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=98.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc--CceE-ecc
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--KGIW-MAR 85 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~--~gi~-~~~ 85 (671)
.|.++|+-.--.. .+.+...++|.+ .+|--+.|+||||||||+|+++|.|+- +...|..... ..++ ++.
T Consensus 481 gI~lenIpvItP~--~~vvv~~Ltf~i--~~G~hLLItGPNGCGKSSLfRILggLW----Pvy~g~L~~P~~~~mFYIPQ 552 (728)
T KOG0064|consen 481 GIILENIPVITPA--GDVLVPKLTFQI--EPGMHLLITGPNGCGKSSLFRILGGLW----PVYNGLLSIPRPNNIFYIPQ 552 (728)
T ss_pred ceEEecCceeccC--cceeecceeEEe--cCCceEEEECCCCccHHHHHHHHhccC----cccCCeeecCCCcceEeccC
Confidence 3666777665543 245777888998 899999999999999999999999998 4456652111 0111 111
Q ss_pred cc------CCC-------------------cchhhhhcc----------CCCccc-ccccchHHHHHHHHHHHHHH---H
Q 005892 86 CA------GIE-------------------PCTLIMDLE----------GTDGRE-RGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 86 ~~------~~~-------------------~~~~vld~~----------g~~~~~-r~~~~~~~qrQrv~iAlAL~---e 126 (671)
.+ -.+ +...+++.. |++... -.....++++||+.+|+-.. .
T Consensus 553 RPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPk 632 (728)
T KOG0064|consen 553 RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPK 632 (728)
T ss_pred CCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcc
Confidence 10 001 111111111 111111 01234567999999999998 8
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
..+|||-|+++.+.- -..+++..++ .|.++|-|||......
T Consensus 633 yalLDEcTsAvsidv------E~~i~~~ak~----~gi~llsithrpslwk 673 (728)
T KOG0064|consen 633 YALLDECTSAVSIDV------EGKIFQAAKD----AGISLLSITHRPSLWK 673 (728)
T ss_pred hhhhhhhhcccccch------HHHHHHHHHh----cCceEEEeecCccHHH
Confidence 999999999876654 5567776665 5999999999987765
No 418
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.87 E-value=7e-09 Score=115.41 Aligned_cols=153 Identities=17% Similarity=0.067 Sum_probs=95.1
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhh---hhccCCC
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLI---MDLEGTD 102 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~v---ld~~g~~ 102 (671)
.++..+ +.+ .+|++++|+|+||+|||||+++|+|.. .|+.|. +.+.+..+.+-..++ ++..++.
T Consensus 147 ~vid~l-~~i--~~Gq~i~I~G~sG~GKStLl~~I~~~~----~~~~gv------I~~~Gerg~ev~e~~~~~l~~~~l~ 213 (438)
T PRK07721 147 RAIDSL-LTV--GKGQRVGIFAGSGVGKSTLMGMIARNT----SADLNV------IALIGERGREVREFIERDLGPEGLK 213 (438)
T ss_pred hhhhee-eee--cCCcEEEEECCCCCCHHHHHHHHhccc----CCCeEE------EEEEecCCccHHHHHHhhcChhhhc
Confidence 466777 778 899999999999999999999999998 787774 222222111111111 1111110
Q ss_pred ccc---ccccchHHHHH-HHHHHHHHH-------------------------HH-Hhcccc--ccCCChhhhhChhHHHH
Q 005892 103 GRE---RGEDDTAFEKQ-SALFALAVS-------------------------DI-VLINMW--CHDIGREQAANKPLLKT 150 (671)
Q Consensus 103 ~~~---r~~~~~~~qrQ-rv~iAlAL~-------------------------ev-LlLDEp--t~~LD~~~~~~~~~~~~ 150 (671)
..- ...+....+|- ....|++++ ++ +.+.|| +.|+|+.. ...
T Consensus 214 r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~------~~~ 287 (438)
T PRK07721 214 RSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSV------FAI 287 (438)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHH------HHH
Confidence 000 00011122222 233444454 22 123465 35677766 888
Q ss_pred HHHHHHHhhC-CCCc-----EEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 151 VFQVMMRLFS-PRKT-----TLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 151 v~ell~~L~~-~~g~-----TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+.+++.++.. ..|. ||++.+||++. .+|+++.++.+ |+|+.++...+
T Consensus 288 l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~d-G~Ivls~~la~ 340 (438)
T PRK07721 288 LPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILD-GHFVLDRQLAN 340 (438)
T ss_pred HHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecC-EEEEEeccHHH
Confidence 8899988864 3475 99999999985 46888888888 99999887543
No 419
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.86 E-value=1.8e-09 Score=127.95 Aligned_cols=122 Identities=13% Similarity=0.124 Sum_probs=74.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee-eccCceEeccccCCCcchhhhhccCCCc--ccccccchHHHH
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS-QTTKGIWMARCAGIEPCTLIMDLEGTDG--RERGEDDTAFEK 115 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~-q~~~gi~~~~~~~~~~~~~vld~~g~~~--~~r~~~~~~~qr 115 (671)
..++++|+||||+||||||++|+|... -+..|-. ....+..+.. .+... ...|... .......+..++
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l---~aq~G~~Vpa~~~~~~~~---~d~i~---~~i~~~~si~~~LStfS~~m~ 391 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLAL---MFQSGIPIPANEHSEIPY---FEEIF---ADIGDEQSIEQNLSTFSGHMK 391 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHH---HHHhCCCccCCccccccc---hhhee---eecChHhHHhhhhhHHHHHHH
Confidence 347999999999999999999999831 2555521 0000000100 00000 0001000 001112234577
Q ss_pred HHHHHHHHHH--HHHhccccccCCChhhhhChhHHHHHH-HHHHHhhCCCCcEEEEEecCCCcc
Q 005892 116 QSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 116 Qrv~iAlAL~--evLlLDEpt~~LD~~~~~~~~~~~~v~-ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
+.+.++..+. .++|+|||++|+|+.. ...+. .++..+.+ .|.++|++||+.+..
T Consensus 392 ~~~~il~~~~~~sLvLlDE~g~GtD~~e------g~ala~aiLe~l~~-~g~~viitTH~~eL~ 448 (771)
T TIGR01069 392 NISAILSKTTENSLVLFDELGAGTDPDE------GSALAISILEYLLK-QNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHhcCCCcEEEecCCCCCCCHHH------HHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence 7777666544 8999999999999988 66663 55666654 589999999998753
No 420
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.83 E-value=2.9e-09 Score=108.22 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=78.4
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 105 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~ 105 (671)
.+..++++.. .++++++|.||||+|||||++++++..+ -...|-........+.. .+.+.. . .+.....
T Consensus 18 ~v~ndi~l~~--~~~~~~~itG~n~~gKs~~l~~i~~~~~---la~~G~~vpa~~~~i~~---~~~i~~--~-~~~~d~~ 86 (218)
T cd03286 18 FVPNDVDLGA--TSPRILVLTGPNMGGKSTLLRTVCLAVI---MAQMGMDVPAKSMRLSL---VDRIFT--R-IGARDDI 86 (218)
T ss_pred eEEeeeEEee--cCCcEEEEECCCCCchHHHHHHHHHHHH---HHHcCCccCccccEecc---ccEEEE--e-cCccccc
Confidence 4566778877 6789999999999999999999998752 12234211100111110 000000 0 0111111
Q ss_pred ccccchHH--HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHH-HHHhhCCCCcEEEEEecCCCccccc
Q 005892 106 RGEDDTAF--EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLE 179 (671)
Q Consensus 106 r~~~~~~~--qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~el-l~~L~~~~g~TIl~VtHDl~~~~~~ 179 (671)
. ...+.| +-+++.-.+..+ .++|+|||..|.++.. ...+... +..+.+..+.++|++||+++.+...
T Consensus 87 ~-~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~d------g~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 87 M-KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHD------GYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred c-cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchH------HHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 1 112344 333333333333 7999999999999876 4455554 4444432389999999999876644
No 421
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.75 E-value=5.2e-09 Score=125.81 Aligned_cols=87 Identities=11% Similarity=0.015 Sum_probs=76.9
Q ss_pred ccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 108 EDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
...+++|+||+.||++|+ +++||||||+|||+.. ...++++|.+|.+ .|.|||+|+||++++. .||+
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~------~~~L~~~L~~L~~-~G~TVIvVeH~~~~i~-~aD~ 559 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NDRLIETLKHLRD-LGNTLIVVEHDEDTIR-AADY 559 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCE
Confidence 456788999999999998 4799999999999999 9999999999975 4999999999998876 5899
Q ss_pred hhhh------hcCCeEEEecCcccccC
Q 005892 183 PVLR------EDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 183 ~~ll------~~~GkI~~~g~~~e~~~ 203 (671)
++++ .+ |+|+..|++.++..
T Consensus 560 vi~LgpgaG~~~-G~iv~~g~~~e~~~ 585 (943)
T PRK00349 560 IVDIGPGAGVHG-GEVVASGTPEEIMK 585 (943)
T ss_pred EEEeccccCCCC-CEEeeccCHHHHhc
Confidence 8888 66 99999999887654
No 422
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.74 E-value=3.2e-09 Score=114.20 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=93.9
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc------cC------------
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC------AG------------ 88 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~------~~------------ 88 (671)
+-..|..|.- ...+++..+|.||.|||||+++++|.+ .|+.|.-...-.+.+... .+
T Consensus 355 F~L~i~~Gef-sdSeiivmlgEngtgkTTfi~mlag~~----~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ 429 (592)
T KOG0063|consen 355 FCLCIKVGEF-SDSEIIVMLGENGTGKTTFIRMLAGRL----KPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRD 429 (592)
T ss_pred EEEEEeeccc-CCceeEEEEccCCcchhHHHHHHhcCC----CCCccCcccccceeccccccCccccchHHHHHHHHhHh
Confidence 3444444431 356799999999999999999999988 788875111111111100 00
Q ss_pred -CCcchhhhhcc------CCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHh
Q 005892 89 -IEPCTLIMDLE------GTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRL 158 (671)
Q Consensus 89 -~~~~~~vld~~------g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L 158 (671)
..+..++-|+. ..-.. .....++++.||+++|+.+- ++.++|||.+-||..+ +...-.++++.
T Consensus 430 ay~~pqF~~dvmkpL~ie~i~dq-evq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQ------Ri~AskvikRf 502 (592)
T KOG0063|consen 430 AYMHPQFVNDVMKPLQIENIIDQ-EVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQ------RIIASKVIKRF 502 (592)
T ss_pred hhcCHHHHHhhhhhhhHHHHHhH-HhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHH------HHHHHHHHHHH
Confidence 01111222211 11111 11234567999999999888 9999999999999988 76666777776
Q ss_pred hCCCCcEEEEEecCCCcccccccchh
Q 005892 159 FSPRKTTLMFVIRDKTRTPLENLEPV 184 (671)
Q Consensus 159 ~~~~g~TIl~VtHDl~~~~~~~~~~~ 184 (671)
.-+.++|-.+|.||+-.+..++|+++
T Consensus 503 ilhakktafvVEhdfImaTYladrvi 528 (592)
T KOG0063|consen 503 ILHAKKTAFVVEHDFIMATYLADRVI 528 (592)
T ss_pred HHhccchhhhhhhHHHHHHhhcceeE
Confidence 55568899999999876655555543
No 423
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.74 E-value=4.6e-09 Score=124.77 Aligned_cols=128 Identities=14% Similarity=0.090 Sum_probs=77.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-ceEeccccCCCcchhhhhccCCC-cc-cccccchHHH
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIWMARCAGIEPCTLIMDLEGTD-GR-ERGEDDTAFE 114 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-gi~~~~~~~~~~~~~vld~~g~~-~~-~r~~~~~~~q 114 (671)
..+.++.|.|||++||||+|+.++...+ -+..|-..... +..++ .++.+.. + .|.. .. ......+..|
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~---maq~G~~vpa~~~~~i~---~~~~i~~--~-ig~~~si~~~lStfS~~m 395 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAAL---MAKSGLPIPANEPSEIP---VFKEIFA--D-IGDEQSIEQSLSTFSGHM 395 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHH---HHHhCCCcccCCCcccc---ccceEEE--e-cCCccchhhchhHHHHHH
Confidence 4567899999999999999999975531 13444211000 00000 0011100 1 1111 11 1112234568
Q ss_pred HHHHHHHHHHH--HHHhccccccCCChhhhhChhHHHHHHH-HHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 115 KQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 115 rQrv~iAlAL~--evLlLDEpt~~LD~~~~~~~~~~~~v~e-ll~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
++++.+++++. .++|+|||++|+|+.. ...+.. ++..+.. .|.++|++||+.+.+...++
T Consensus 396 ~~~~~Il~~~~~~sLvLlDE~~~GtDp~e------g~ala~aile~l~~-~~~~vIitTH~~el~~~~~~ 458 (782)
T PRK00409 396 TNIVRILEKADKNSLVLFDELGAGTDPDE------GAALAISILEYLRK-RGAKIIATTHYKELKALMYN 458 (782)
T ss_pred HHHHHHHHhCCcCcEEEecCCCCCCCHHH------HHHHHHHHHHHHHH-CCCEEEEECChHHHHHHHhc
Confidence 88888888766 8999999999999987 666654 4555544 48999999999877654333
No 424
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.73 E-value=6.8e-09 Score=124.59 Aligned_cols=87 Identities=10% Similarity=0.027 Sum_probs=77.3
Q ss_pred cccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 107 GEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 107 ~~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
....+++|+||+.||++++ .++||||||+|||+.. ...++++|.++.+. |.|||+|+||++++. .||
T Consensus 485 ~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~------~~~L~~~L~~L~~~-G~TVIvVeHd~~~i~-~aD 556 (924)
T TIGR00630 485 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NERLINTLKRLRDL-GNTVIVVEHDEETIR-AAD 556 (924)
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCC
Confidence 3456889999999999998 4999999999999999 99999999999765 999999999998876 789
Q ss_pred chhhh------hcCCeEEEecCccccc
Q 005892 182 EPVLR------EDIQKIWDSVPKPQAH 202 (671)
Q Consensus 182 ~~~ll------~~~GkI~~~g~~~e~~ 202 (671)
++++| .+ |+|+..|++.++.
T Consensus 557 ~vi~LgpgaG~~~-G~Iv~~g~~~el~ 582 (924)
T TIGR00630 557 YVIDIGPGAGIHG-GEVVASGTPEEIL 582 (924)
T ss_pred EEEEecccccCCC-CEEeeccCHHHHh
Confidence 98888 56 9999999987764
No 425
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=7.9e-09 Score=108.38 Aligned_cols=69 Identities=6% Similarity=0.049 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHH------------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc
Q 005892 112 AFEKQSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (671)
Q Consensus 112 ~~qrQrv~iAlAL~------------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~ 179 (671)
.+|+|++.+|++++ +++++|||+++||+.. +..+++.+.++. .+++++|+...+...
T Consensus 186 ~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~------~~~l~~~l~~~~-----q~ii~~~~~~~~~~~ 254 (270)
T cd03242 186 QGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGR------QAALLDAIEGRV-----QTFVTTTDLADFDAL 254 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHH------HHHHHHHhhcCC-----CEEEEeCCchhccch
Confidence 44999999999873 7899999999999988 888888887652 466777777665555
Q ss_pred c---cchhhhhcCCeE
Q 005892 180 N---LEPVLREDIQKI 192 (671)
Q Consensus 180 ~---~~~~ll~~~GkI 192 (671)
| .+++.+.+ |+|
T Consensus 255 ~~~~~~i~~l~~-g~i 269 (270)
T cd03242 255 WLRRAQIFRVDA-GTL 269 (270)
T ss_pred hccCccEEEEeC-cEE
Confidence 4 33444444 654
No 426
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.71 E-value=1.2e-08 Score=122.85 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=117.4
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce-------------------Eecc
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-------------------WMAR 85 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi-------------------~~~~ 85 (671)
..++++++.-+ .+|+.+.++||.||||||||+.|+|-......+ .|++ +..|. .++.
T Consensus 128 ~~il~~~sg~~--~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~-~~~i-sy~G~~~~e~~~~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 128 IQILKDISGII--KPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKS-SGEI-TYNGHDLKEFVPKKTVAYNSEQDVHFPE 203 (1391)
T ss_pred ceeecCcceeE--cCCceEEEecCCCCchHHHHHHHhCCCcccccC-CCce-eECCCcccccccCceEEeccccccccce
Confidence 36888888888 999999999999999999999999987322221 2321 11110 0000
Q ss_pred ccCCCcchhh--------------------------hhccCCCc-------ccccccchHHHHHHHHHHHHHH---HHHh
Q 005892 86 CAGIEPCTLI--------------------------MDLEGTDG-------RERGEDDTAFEKQSALFALAVS---DIVL 129 (671)
Q Consensus 86 ~~~~~~~~~v--------------------------ld~~g~~~-------~~r~~~~~~~qrQrv~iAlAL~---evLl 129 (671)
....+.+.++ +...|++. ..-.+..+++||+||.++-+++ .++.
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 0001111111 12222211 0001112455999999998888 9999
Q ss_pred ccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC-CcccccccchhhhhcCCeEEEecCccccc
Q 005892 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 130 LDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl-~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
+||+|.|||-.+ .-++.+.++.+.+-.+.|.++..+.. .++-.+.|++++|.+ |+++..|+..++.
T Consensus 284 ~De~t~GLDSsT------al~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 284 WDEITRGLDSST------AFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRDEVL 350 (1391)
T ss_pred eecccccccHHH------HHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHHHHH
Confidence 999999999888 88888888888877899999999998 577778899999998 9999999987653
No 427
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.65 E-value=7.4e-08 Score=97.45 Aligned_cols=61 Identities=10% Similarity=0.115 Sum_probs=48.2
Q ss_pred cchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 109 DDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
..+++|+..+++|+-++ .+++|||+.++||... +..+.++|.++.+ +.-+|++||+.....
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~------~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~ 203 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQN------RKRLADLLKELSK--QSQFIITTHNPEMFE 203 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHH------HHHHHHHHHHHTT--TSEEEEE-S-HHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccc------ccccccccccccc--ccccccccccccccc
Confidence 34677999999988777 7889999999999999 9999999999863 578999999976544
No 428
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.61 E-value=1.1e-07 Score=93.00 Aligned_cols=43 Identities=5% Similarity=0.103 Sum_probs=38.0
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~ 175 (671)
-+.+||||.++|.|.. +-.++..|.++.+. |.-+||+||..-.
T Consensus 148 GiYiLDEPEa~LSp~R------Qlella~l~~la~s-GaQ~IiATHSPiL 190 (233)
T COG3910 148 GIYILDEPEAALSPSR------QLELLAILRDLADS-GAQIIIATHSPIL 190 (233)
T ss_pred ceEEecCccccCCHHH------HHHHHHHHHHHHhc-CCeEEEEecChhh
Confidence 6889999999999987 88899999999875 9999999998744
No 429
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.51 E-value=7.4e-08 Score=121.17 Aligned_cols=87 Identities=8% Similarity=-0.035 Sum_probs=75.6
Q ss_pred ccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 108 EDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
...+++|+||+.||++++ .++||||||++||+.. +..++++|.++.+. |.|||+|+||++ +...||+
T Consensus 475 ~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~------~~~L~~lL~~L~~~-G~TVIvVeHd~~-vi~~aDr 546 (1809)
T PRK00635 475 ATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQD------THKLINVIKKLRDQ-GNTVLLVEHDEQ-MISLADR 546 (1809)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCcHH-HHHhCCE
Confidence 456788999999999999 3799999999999999 99999999999765 999999999998 5568999
Q ss_pred hhhhh-----cCCeEEEecCccccc
Q 005892 183 PVLRE-----DIQKIWDSVPKPQAH 202 (671)
Q Consensus 183 ~~ll~-----~~GkI~~~g~~~e~~ 202 (671)
++++. ..|+|+..|++++++
T Consensus 547 Vi~L~pGag~~gG~Iv~~G~~~eil 571 (1809)
T PRK00635 547 IIDIGPGAGIFGGEVLFNGSPREFL 571 (1809)
T ss_pred EEEEcCCcccCCCEEEEecCHHHHh
Confidence 98885 238999999877653
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.48 E-value=2.6e-07 Score=94.83 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=26.0
Q ss_pred ccccCCccEEEEEcCCCCChHHH-HHHHhccc
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTL-LNHLFGTN 64 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTL-Ln~L~Gl~ 64 (671)
++ .+|+++.|+|++||||||| ++.++|+.
T Consensus 20 gi--~~g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 20 GI--PAGSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred CC--CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46 7788999999999999999 79999876
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.47 E-value=3.1e-07 Score=92.62 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHH---HHHhccccc-----cCCChhhhhChhHHHHHHHHHHHhhC
Q 005892 114 EKQSALFALAVS---DIVLINMWC-----HDIGREQAANKPLLKTVFQVMMRLFS 160 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt-----~~LD~~~~~~~~~~~~v~ell~~L~~ 160 (671)
+++++.+|++++ +++++|||| ++||+.. +..+.+++.+++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~------~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPEL------VAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHH------HHHHHHHHHHHhh
Confidence 888899999998 999999999 9999998 9999999999853
No 432
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.46 E-value=1.3e-07 Score=101.23 Aligned_cols=146 Identities=13% Similarity=0.079 Sum_probs=83.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeec--cCceEeccccCCCcchhhhhccCCCcccccccchHHHH
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--TKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEK 115 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~--~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qr 115 (671)
..|..++|.||+|||||||+++|+|.. ++..|-+.. .....+.. .....+..... ..+ ....-.
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~----~~~~~iv~ied~~El~~~~---~~~~~l~~~~~-----~~~-~~~~~~- 207 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEI----PKDERIITIEDTREIFLPH---PNYVHLFYSKG-----GQG-LAKVTP- 207 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccC----CccccEEEEcCccccCCCC---CCEEEEEecCC-----CCC-cCccCH-
Confidence 568899999999999999999999998 555442110 00000000 00000000000 000 000001
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
.-+++.++. +++++|||.+ .++++++..+... +.+++.++|..+... ..++.+.+.. |++
T Consensus 208 -~~~l~~~Lr~~pd~ii~gE~r~-------------~e~~~~l~a~~~g-~~~~i~T~Ha~~~~~-~~~Rl~~l~~-~~~ 270 (308)
T TIGR02788 208 -KDLLQSCLRMRPDRIILGELRG-------------DEAFDFIRAVNTG-HPGSITTLHAGSPEE-AFEQLALMVK-SSQ 270 (308)
T ss_pred -HHHHHHHhcCCCCeEEEeccCC-------------HHHHHHHHHHhcC-CCeEEEEEeCCCHHH-HHHHHHHHhh-ccc
Confidence 112333343 9999999964 2345666666532 345689999998444 4666666666 888
Q ss_pred EEecCcccccCCccccchhcccc
Q 005892 193 WDSVPKPQAHMETPLSEFFNVEV 215 (671)
Q Consensus 193 ~~~g~~~e~~~~~~l~~~f~~~~ 215 (671)
...|.+.+.+ ...+...|++-+
T Consensus 271 ~~~g~~~~~~-~~~i~~~~d~ii 292 (308)
T TIGR02788 271 AGLGLDFAYI-VKLVREVIDIVV 292 (308)
T ss_pred cccCCCHHHH-HHHHHHhCCEEE
Confidence 8888877766 345556666544
No 433
>PRK13695 putative NTPase; Provisional
Probab=98.45 E-value=2.9e-07 Score=89.96 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=72.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc------cCCC------cchhhhhccCCCccc----
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC------AGIE------PCTLIMDLEGTDGRE---- 105 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~------~~~~------~~~~vld~~g~~~~~---- 105 (671)
.++|+|++|||||||++.|.+-. .+ .|.. ..+.+.... .+.. .....+...+.+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l----~~-~G~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 74 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL----KE-EGYK--VGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGK 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----HH-CCCe--EEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceee
Confidence 47999999999999999988765 23 3421 011111000 0000 000000111111111
Q ss_pred ccccchHHHHHHHHHHHHHH---HHHhcccc--ccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 106 RGEDDTAFEKQSALFALAVS---DIVLINMW--CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 106 r~~~~~~~qrQrv~iAlAL~---evLlLDEp--t~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
......++++-...++.... ++|++||| +..++ ..+.+.+..+.+ .|.++|+|+|+.. +...+
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----------~~~~~~l~~~~~-~~~~~i~v~h~~~-~~~~~ 142 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----------PKFVKAVEEVLD-SEKPVIATLHRRS-VHPFV 142 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----------HHHHHHHHHHHh-CCCeEEEEECchh-hHHHH
Confidence 11123455666665554443 99999995 32333 224455555553 4889999999853 33457
Q ss_pred cchhhhhcCCeEEEe
Q 005892 181 LEPVLREDIQKIWDS 195 (671)
Q Consensus 181 ~~~~ll~~~GkI~~~ 195 (671)
+++..+.+ |+|...
T Consensus 143 ~~i~~~~~-~~i~~~ 156 (174)
T PRK13695 143 QEIKSRPG-GRVYEL 156 (174)
T ss_pred HHHhccCC-cEEEEE
Confidence 77777777 888654
No 434
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.44 E-value=1.1e-07 Score=102.56 Aligned_cols=136 Identities=20% Similarity=0.169 Sum_probs=91.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------ecccc--------------C-CC------
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------MARCA--------------G-IE------ 90 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------~~~~~--------------~-~~------ 90 (671)
.+|++.|++|-||-||||-|++++|-+ +|.-|+.... ..| +.+.. . ..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~----kpnlg~~~~p-p~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ 172 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQ----KPNLGRYDNP-PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQ 172 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCC----CCCCCCCCCC-cchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHH
Confidence 579999999999999999999999998 7877762110 001 00000 0 00
Q ss_pred --------------------c---chhhhhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhC
Q 005892 91 --------------------P---CTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAAN 144 (671)
Q Consensus 91 --------------------~---~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~ 144 (671)
. ....+++.++..++. +..++++-||.+||++.. ++.++|||.+-||..+
T Consensus 173 ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~-~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQ--- 248 (592)
T KOG0063|consen 173 IPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREV-EQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQ--- 248 (592)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhh-hhcccchhhhhhhhhhhhhhcceeEecCCcccchHHH---
Confidence 0 000111112222222 123455888888888887 9999999999999988
Q ss_pred hhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhh
Q 005892 145 KPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (671)
Q Consensus 145 ~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll 186 (671)
+-.-...|+.|... ..=||+|.||++....+.|-+.++
T Consensus 249 ---RLkaA~~IRsl~~p-~~YiIVVEHDLsVLDylSDFiCcL 286 (592)
T KOG0063|consen 249 ---RLKAAITIRSLINP-DRYIIVVEHDLSVLDYLSDFICCL 286 (592)
T ss_pred ---hhhHHHHHHHhhCC-CCeEEEEEeechHHHhhhcceeEE
Confidence 77777888888765 778999999998876555554444
No 435
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.28 E-value=6.1e-07 Score=89.54 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Q 005892 111 TAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~ 175 (671)
..++++.+.+...+. .++++|||.++|.|.. +..+++.+..+.. .+.-+|++||....
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~------q~~l~~~l~~~~~-~~~QviitTHSp~i 301 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSW------QRKLIELLKELSK-KNIQVIITTHSPFI 301 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHH------HHHHHHHHHHTGG-GSSEEEEEES-GGG
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHH------HHHHHHHHHhhCc-cCCEEEEeCccchh
Confidence 456778777776666 4689999999999988 9999999988866 47899999998654
No 436
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.26 E-value=5.7e-07 Score=99.88 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=37.9
Q ss_pred ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 24 l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
+..++.+|++.+ .+|++++|+|||||||||||+ .|+. .|++|
T Consensus 18 l~~vL~~Vsl~i--~~GEiv~L~G~SGsGKSTLLr--~~l~----~~~sG 59 (504)
T TIGR03238 18 LERILVKFNKEL--PSSSLLFLCGSSGDGKSEILA--ENKR----KFSEG 59 (504)
T ss_pred HHHHHhCCceee--cCCCEEEEECCCCCCHHHHHh--cCCC----CCCCC
Confidence 567899999999 999999999999999999999 6776 67777
No 437
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.23 E-value=4.4e-06 Score=93.31 Aligned_cols=151 Identities=19% Similarity=0.078 Sum_probs=85.6
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 105 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~ 105 (671)
.++..+ +.+ .+|+.++|+|+||+|||||+++|+|.. +|+.|.+ ...+..+.+-..++-...+-....
T Consensus 152 ~~iD~l-~~i--~~Gq~~~I~G~sG~GKStLl~~I~~~~----~~~~~vi------~~iG~r~~ev~~~~~~~~~~~~l~ 218 (440)
T TIGR01026 152 RSIDGL-LTV--GKGQRIGIFAGSGVGKSTLLGMIARNT----EADVNVI------ALIGERGREVREFIEHDLGEEGLK 218 (440)
T ss_pred eeeeec-ccc--CCCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEE------EEEeecchHHHHHHHHHhcccccc
Confidence 456666 777 889999999999999999999999988 6765521 111111111111111111111000
Q ss_pred c------cccchHHHHHH-HHHHHHHH--------HHH------------------hccccc--cCCChhhhhChhHHHH
Q 005892 106 R------GEDDTAFEKQS-ALFALAVS--------DIV------------------LINMWC--HDIGREQAANKPLLKT 150 (671)
Q Consensus 106 r------~~~~~~~qrQr-v~iAlAL~--------evL------------------lLDEpt--~~LD~~~~~~~~~~~~ 150 (671)
+ ..+....+|.+ ...|++++ +|| .+.||. .|.++.. ...
T Consensus 219 ~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~------~~~ 292 (440)
T TIGR01026 219 RSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSV------FST 292 (440)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhH------HHH
Confidence 0 00111223332 33444444 222 234442 2444443 777
Q ss_pred HHHHHHHhhCCCCc-------EEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 151 VFQVMMRLFSPRKT-------TLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 151 v~ell~~L~~~~g~-------TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
+.+++.+.... +. ||++.+||+. ..+++.+..+.+ |+|+.+....
T Consensus 293 l~~l~ERag~~-~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~d-G~ivLsr~la 344 (440)
T TIGR01026 293 LPRLLERAGAS-GKGSITAFYTVLVEGDDMN--EPIADSVRGILD-GHIVLSRALA 344 (440)
T ss_pred HHHHHHHhccC-CCCeeeEEEEEEccCcCCC--cchhhhhccccc-eEEEEecchh
Confidence 77787777643 56 8888899984 335777777888 9999876643
No 438
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.21 E-value=2.2e-06 Score=80.93 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=62.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhh---hhccCCC------cccccccchH
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLI---MDLEGTD------GRERGEDDTA 112 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~v---ld~~g~~------~~~r~~~~~~ 112 (671)
++.|.||+|+|||||++.+++.. .+..|.. +++............ ....+.. ..... ....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~----~~~~~~v-----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 70 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI----ATKGGKV-----VYVDIEEEIEELTERLIGESLKGALDNLIIVFATAD-DPAA 70 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH----HhcCCEE-----EEEECCcchHHHHHHHhhhhhccccccEEEEEcCCC-CCcH
Confidence 47899999999999999999987 3433321 122111100000000 0000000 00000 1111
Q ss_pred HHHHHHHHHHHHH---HHHhccccccCCChhh----hhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcc
Q 005892 113 FEKQSALFALAVS---DIVLINMWCHDIGREQ----AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 113 ~qrQrv~iAlAL~---evLlLDEpt~~LD~~~----~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
....+...+.+.. +++++||++.-++... ..+......+.+++..+ ++.+.|+|+++|.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 71 ARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCcc
Confidence 1222333444443 7999999985443321 11122245555555554 34599999999988543
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.19 E-value=1.4e-06 Score=85.30 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=34.9
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~ 175 (671)
+++++|+|++.+|. ........+.+++..+.+. |+|+|+++|+...
T Consensus 97 ~~lviD~~~~~~~~---~~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~ 142 (187)
T cd01124 97 KRVVIDSVSGLLLM---EQSTARLEIRRLLFALKRF-GVTTLLTSEQSGL 142 (187)
T ss_pred CEEEEeCcHHHhhc---ChHHHHHHHHHHHHHHHHC-CCEEEEEeccccC
Confidence 78999999998882 1122267777888887654 9999999998764
No 440
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.10 E-value=2.1e-06 Score=77.61 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=30.7
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHh
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLF 61 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~ 61 (671)
.+++++++.+ .+|++++|+||||||||||++++.
T Consensus 3 ~aL~~vsl~i--~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDV--YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEE--cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4678888888 889999999999999999999975
No 441
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.07 E-value=9.4e-06 Score=83.15 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=75.7
Q ss_pred ccccccCCccEEEEEcCCCCChHHHHHHHh-cccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcc------
Q 005892 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLF-GTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR------ 104 (671)
Q Consensus 32 ~l~~~g~~geivaIlGpNGSGKSTLLn~L~-Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~------ 104 (671)
+-++ ++|.++.|.|++|||||||...++ +.. ..|+. ..++.-........--++..|++..
T Consensus 19 ~gG~--~~g~~~~i~G~~GsGKt~l~~~~~~~~~------~~g~~----~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g 86 (234)
T PRK06067 19 GGGI--PFPSLILIEGDHGTGKSVLSQQFVYGAL------KQGKK----VYVITTENTSKSYLKQMESVKIDISDFFLWG 86 (234)
T ss_pred CCCC--cCCcEEEEECCCCCChHHHHHHHHHHHH------hCCCE----EEEEEcCCCHHHHHHHHHHCCCChhHHHhCC
Confidence 3467 889999999999999999998874 333 12431 1222111000000000011111100
Q ss_pred ---------cccccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEe
Q 005892 105 ---------ERGEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVI 170 (671)
Q Consensus 105 ---------~r~~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~Vt 170 (671)
.........+.+.+......+ +++++|+|++.++... ......++..+..+.+ .|.|+++++
T Consensus 87 ~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~---~~~~~~~l~~l~~l~~-~g~tvllt~ 162 (234)
T PRK06067 87 YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAE---EDDILNFLTEAKNLVD-LGKTILITL 162 (234)
T ss_pred CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCC---HHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 000001122345555555554 6899999996544322 1224555555666655 489999999
Q ss_pred cCCCcccccccchhhhhcCCeEE
Q 005892 171 RDKTRTPLENLEPVLREDIQKIW 193 (671)
Q Consensus 171 HDl~~~~~~~~~~~ll~~~GkI~ 193 (671)
|+.......+.+...+.+ |.|.
T Consensus 163 ~~~~~~~~~~~~~~~l~D-gvI~ 184 (234)
T PRK06067 163 HPYAFSEELLSRIRSICD-VYLK 184 (234)
T ss_pred cCCcCCHHHHHHHHhheE-EEEE
Confidence 987654433444444444 5543
No 442
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=8.6e-06 Score=90.45 Aligned_cols=160 Identities=14% Similarity=0.012 Sum_probs=91.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccC
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~ 88 (671)
.++...++..|... ..++.. .+.+ .+|+.++|+|++|+|||||+++|+|.. .|+.|.+ .+-+..+
T Consensus 130 ~~~r~~i~~~l~TG--iraID~-ll~I--~~Gqri~I~G~sG~GKTtLl~~Ia~~~----~~~~gvI------~~iGerg 194 (432)
T PRK06793 130 AFEREEITDVFETG--IKSIDS-MLTI--GIGQKIGIFAGSGVGKSTLLGMIAKNA----KADINVI------SLVGERG 194 (432)
T ss_pred chheechhhccCCC--CEEEec-ccee--cCCcEEEEECCCCCChHHHHHHHhccC----CCCeEEE------EeCCCCc
Confidence 35566666666431 234444 3677 789999999999999999999999998 6776632 2222222
Q ss_pred CCcchh---hhhccCCCcc---cccccchHHHHHHHHHH-HHHH---------HHHhccccccCCChhhhhChhHHHHHH
Q 005892 89 IEPCTL---IMDLEGTDGR---ERGEDDTAFEKQSALFA-LAVS---------DIVLINMWCHDIGREQAANKPLLKTVF 152 (671)
Q Consensus 89 ~~~~~~---vld~~g~~~~---~r~~~~~~~qrQrv~iA-lAL~---------evLlLDEpt~~LD~~~~~~~~~~~~v~ 152 (671)
.+-.-+ .+...|+... ....+....++.++..+ .+++ -+|++|++|...++ .+++-
T Consensus 195 ~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A--------~reis 266 (432)
T PRK06793 195 REVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA--------RRSVD 266 (432)
T ss_pred ccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH--------HHHHH
Confidence 211111 1222222211 01123345677776544 5554 35678999988776 34555
Q ss_pred HHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 153 QVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 153 ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
..+.+.-.. |.+..+.+| + +.++.+...... |.|....+
T Consensus 267 l~~~e~p~~-G~~~~~~s~-l---~~L~ERag~~~~-GSiT~~~t 305 (432)
T PRK06793 267 IAVKELPIG-GKTLLMESY-M---KKLLERSGKTQK-GSITGIYT 305 (432)
T ss_pred HHhcCCCCC-Ceeeeeecc-c---hhHHHHhccCCC-cceEEEEE
Confidence 555555443 777777777 3 222333333333 77766544
No 443
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.01 E-value=6.5e-06 Score=99.30 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=70.7
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccc
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRER 106 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r 106 (671)
+-.++.++ ..+.++.|.|||++||||+|+.++-+.. -...|-........+.- .+.+. -..|......
T Consensus 597 vpnd~~l~---~~~~~~iiTGpN~~GKSt~lr~v~l~~i---lAq~G~~VPa~~a~i~~---~d~I~---triga~d~i~ 664 (854)
T PRK05399 597 VPNDCDLD---EERRLLLITGPNMAGKSTYMRQVALIVL---LAQIGSFVPAESARIGI---VDRIF---TRIGASDDLA 664 (854)
T ss_pred EecceeeC---CCCcEEEEECCCCCCcHHHHHHHHHHHH---HHhcCCceeccceEecc---cCeee---eccCcccccc
Confidence 33445554 3567999999999999999999875431 13344211111111110 00000 0112111111
Q ss_pred cccchHHHHHHHHHHHHHH-----HHHhcccc---ccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 107 GEDDTAFEKQSALFALAVS-----DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 107 ~~~~~~~qrQrv~iAlAL~-----evLlLDEp---t~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
...+.|+.....++..+. .++|+||| |+.+|. ....+.++..+.+..|.++||+||+.+...
T Consensus 665 -~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg--------~aia~aile~l~~~~~~~~l~aTH~~el~~ 734 (854)
T PRK05399 665 -SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG--------LSIAWAVAEYLHDKIGAKTLFATHYHELTE 734 (854)
T ss_pred -cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh--------HHHHHHHHHHHHhcCCceEEEEechHHHHH
Confidence 123566666655555554 79999999 555553 223344444554444689999999976543
No 444
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.96 E-value=4.7e-05 Score=68.84 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+..+.|+||+|+|||||++.|++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 5689999999999999999999988
No 445
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.93 E-value=4.3e-06 Score=96.70 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=62.5
Q ss_pred ccchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 108 EDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
...+++|++|+++|++++ +++|+|||++|||+.. ...+.+.+.++.+ +.+||+|||++..+. .|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~------~~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~a 509 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGET------AQAIAKKLAQLSE--RHQVLCVTHLPQVAA-HA 509 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEEChHHHHH-hc
Confidence 345788999999999887 4999999999999998 9999999999863 799999999998775 68
Q ss_pred cchhhhhc
Q 005892 181 LEPVLRED 188 (671)
Q Consensus 181 ~~~~ll~~ 188 (671)
++++++.+
T Consensus 510 d~~~~l~k 517 (563)
T TIGR00634 510 DAHFKVEK 517 (563)
T ss_pred CeEEEEEE
Confidence 88877765
No 446
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.89 E-value=1.1e-05 Score=83.16 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=64.9
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccc
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRER 106 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r 106 (671)
+-.++.++. ..+.++.|.|||.+||||+||.++=..+ | ...|-........+.- .+.+.. ..+......
T Consensus 32 v~ndi~~~~--~~~~~~iiTGpN~sGKSt~lk~i~~~~i--l-aq~G~~VPA~~~~i~~---~d~I~t---~~~~~d~~~ 100 (235)
T PF00488_consen 32 VPNDIELSN--NKSRIIIITGPNMSGKSTFLKQIGLIVI--L-AQIGCFVPAESAEIPI---FDRIFT---RIGDDDSIE 100 (235)
T ss_dssp --EEEEESS--SSSSEEEEESSTTSSHHHHHHHHHHHHH--H-HTTT--BSSSEEEEE-----SEEEE---EES---SST
T ss_pred ecceeecCC--CceeEEEEeCCCccchhhHHHHHHHHhh--h-hhcCceeeeccccccc---ccEEEe---ecccccccc
Confidence 334555554 4447999999999999999999875431 1 2334211111111100 011100 011111111
Q ss_pred cccchHHHHHHHHHHHHH--H---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 107 GEDDTAFEKQSALFALAV--S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 107 ~~~~~~~qrQrv~iAlAL--~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
...+.|+....-++..+ + .++|+||+..|-++..+ ..+...++ ..|.+..+..+|++||+.+.+.
T Consensus 101 -~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg--~ai~~ail---e~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 101 -SGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEG--IAIAIAIL---EYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp -TSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHH--HHHHHHHH---HHHHHTTT-EEEEEES-GGGGG
T ss_pred -cccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHH--HHHHHHHH---HHHHHhccccEEEEeccchhHH
Confidence 11244433332233222 2 67899999988877651 22233333 3343324788999999997654
No 447
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.79 E-value=1.9e-05 Score=82.11 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G 190 (671)
.+|++.+|+++. .++++ ||..+|.....+ .++ +..+.. .+.|.|+++|++.... .++.+.++.. |
T Consensus 142 ~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~-----~~i--~~~~~~-~~~~~ivls~~la~~~-~~paI~vl~s-~ 209 (249)
T cd01128 142 PKRFFGAARNIEEGGSLTII--ATALVDTGSRMD-----DVI--FEEFKG-TGNMELVLDRRLAERR-IFPAIDILKS-G 209 (249)
T ss_pred hHHHHHHhcCCCCCCceEEe--eeheecCCCccc-----chH--HHHHhc-CCCcEEEEchHHhhCC-CCCeEEEcCC-C
Confidence 389999998873 78888 888888544111 111 233322 3678899999987655 3567777777 7
Q ss_pred eE
Q 005892 191 KI 192 (671)
Q Consensus 191 kI 192 (671)
.+
T Consensus 210 sr 211 (249)
T cd01128 210 TR 211 (249)
T ss_pred Cc
Confidence 66
No 448
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.79 E-value=3.3e-05 Score=77.35 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++.|.||+||||||+++.|.+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998877
No 449
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.78 E-value=1.8e-05 Score=97.94 Aligned_cols=74 Identities=9% Similarity=0.062 Sum_probs=65.7
Q ss_pred ccchHHHHHHHHHHHHHH-------------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 005892 108 EDDTAFEKQSALFALAVS-------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-------------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~ 174 (671)
...+++|++++.||+|++ ++||+|||+++||+.. +..++++|.++.. .|.+|+||||+++
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~------~~~~~~~l~~l~~-~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDS------LDRAIGILDAIRE-GSKMIGIISHVPE 1021 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence 456899999999998886 4889999999999999 9999999999976 5999999999999
Q ss_pred cccccccchhhhhc
Q 005892 175 RTPLENLEPVLRED 188 (671)
Q Consensus 175 ~~~~~~~~~~ll~~ 188 (671)
+...+++++.|+..
T Consensus 1022 ~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 1022 FRERIPHRILVKKT 1035 (1042)
T ss_pred HHHhhCCEEEEEEC
Confidence 99888888887754
No 450
>PRK10869 recombination and repair protein; Provisional
Probab=97.76 E-value=1.5e-05 Score=91.87 Aligned_cols=72 Identities=13% Similarity=0.010 Sum_probs=61.9
Q ss_pred ccchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 108 EDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
...+++|++|+++|++++ +++|+|||++|||... ...+.+.+.++.+ +.+||+|||++..+ ..|
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~------~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~a 499 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPT------AAVVGKLLRQLGE--STQVMCVTHLPQVA-GCG 499 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHH-HhC
Confidence 345889999999999998 5999999999999998 8999999999953 68999999999876 467
Q ss_pred cchhhhhc
Q 005892 181 LEPVLRED 188 (671)
Q Consensus 181 ~~~~ll~~ 188 (671)
++.+++..
T Consensus 500 d~~~~v~k 507 (553)
T PRK10869 500 HQHFFVSK 507 (553)
T ss_pred CEEEEEec
Confidence 87777655
No 451
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.74 E-value=2.2e-05 Score=77.73 Aligned_cols=37 Identities=30% Similarity=0.209 Sum_probs=31.2
Q ss_pred ccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 32 ~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
.+.+ ..|+.++|+||||||||||+++|+|+. +|..|.
T Consensus 19 ~~~v--~~g~~i~I~G~tGSGKTTll~aL~~~i----~~~~~~ 55 (186)
T cd01130 19 WLAV--EARKNILISGGTGSGKTTLLNALLAFI----PPDERI 55 (186)
T ss_pred HHHH--hCCCEEEEECCCCCCHHHHHHHHHhhc----CCCCCE
Confidence 4445 678899999999999999999999998 666663
No 452
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.65 E-value=3.1e-05 Score=89.35 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=60.3
Q ss_pred cchHHHHHHHHHHHHHH-------------HHHhccccc-cCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 005892 109 DDTAFEKQSALFALAVS-------------DIVLINMWC-HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~-------------evLlLDEpt-~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~ 174 (671)
..+++|+||+++|++++ +++|+|||+ ++||+.. ...+.+++.++ . |.+||+|||+..
T Consensus 468 ~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~------~~~~~~~l~~~--~-~~~iiiish~~~ 538 (562)
T PHA02562 468 SFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEG------TKALLSILDSL--K-DTNVFVISHKDH 538 (562)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhH------HHHHHHHHHhC--C-CCeEEEEECchh
Confidence 45788999999998875 699999998 6899998 99999999998 3 789999999976
Q ss_pred cccccccchhhhhcCCeE
Q 005892 175 RTPLENLEPVLREDIQKI 192 (671)
Q Consensus 175 ~~~~~~~~~~ll~~~GkI 192 (671)
... .+++++++.+.|+.
T Consensus 539 ~~~-~~d~~~~l~~~~~~ 555 (562)
T PHA02562 539 DPQ-KFDRHLKMEKVGRF 555 (562)
T ss_pred chh-hhhcEEEEEEECCe
Confidence 554 57777777653443
No 453
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.63 E-value=3e-05 Score=95.78 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=59.4
Q ss_pred cccchHHHHHHHHHHHHHH-----------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Q 005892 107 GEDDTAFEKQSALFALAVS-----------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (671)
Q Consensus 107 ~~~~~~~qrQrv~iAlAL~-----------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~ 175 (671)
....+++|++++.||++|+ ++|++||||.+||+.. +..++++|..+... |++|+||||....
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~------~~~~~~~l~~l~~~-g~~v~iisH~~~l 1019 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSET------LDTALDALDALNAS-GKTIGVISHVEAM 1019 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEecHHHH
Confidence 4567899999999999986 6799999999999999 99999999999765 9999999996655
Q ss_pred ccccccchhh
Q 005892 176 TPLENLEPVL 185 (671)
Q Consensus 176 ~~~~~~~~~l 185 (671)
..++..++.|
T Consensus 1020 ~~~i~~qi~V 1029 (1047)
T PRK10246 1020 KERIPVQIKV 1029 (1047)
T ss_pred HHhccceEEE
Confidence 5544444433
No 454
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.63 E-value=4.6e-05 Score=62.03 Aligned_cols=26 Identities=42% Similarity=0.484 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.|.++.|.|||||||||||.+|.=++
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998777
No 455
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.61 E-value=4.3e-05 Score=75.62 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
|++++|+||||||||||+++|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 5699999999999999999999987
No 456
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.61 E-value=4.6e-05 Score=78.40 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=35.1
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~ 174 (671)
+++++| |++.+......++.....+++.+.++.++.|+++|+++|..-
T Consensus 113 ~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 113 DLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 889999 776542211223344788899898888777999999999873
No 457
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.60 E-value=4.3e-05 Score=75.25 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+|++++|+|+||||||||+++|+|++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999999988
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.60 E-value=3.7e-05 Score=77.37 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|.+++|+||||||||||++.|.|+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999988
No 459
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.57 E-value=0.00014 Score=87.73 Aligned_cols=45 Identities=2% Similarity=0.030 Sum_probs=38.3
Q ss_pred HHHhccccccCC-ChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 126 DIVLINMWCHDI-GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 126 evLlLDEpt~~L-D~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
.++++|||..+| |+.. ...+.+.++.+++. |.+++++||+++.+.
T Consensus 654 ~illlDE~~~~L~d~~~------~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 654 SLIILDEAWLMLGHPVF------RDKIREWLKVLRKA-NCAVVLATQSISDAE 699 (818)
T ss_pred cEEEEECchhhcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHh
Confidence 678899999999 5766 88899999998764 899999999997654
No 460
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.53 E-value=0.00011 Score=81.83 Aligned_cols=57 Identities=16% Similarity=0.039 Sum_probs=46.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
..++..++++.|... ..++..+. .+ .+|++++|+||+||||||||++|+|+. +|+.|
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I--~~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~g 194 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PL--CAGQRIGIFAGSGVGKSTLLAMLARAD----AFDTV 194 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-ee--cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCee
Confidence 358899999999542 34555553 56 789999999999999999999999998 68777
No 461
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.51 E-value=7.8e-05 Score=74.47 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|++++|+||+|||||||++.|++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578899999999999999999999986
No 462
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.49 E-value=6.9e-05 Score=76.72 Aligned_cols=33 Identities=30% Similarity=0.296 Sum_probs=29.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
.+..++||.||||||||||++.|.|++ ++..|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l----~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL----QQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh----hhccCC
Confidence 456799999999999999999999999 677663
No 463
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=97.47 E-value=0.00012 Score=88.26 Aligned_cols=132 Identities=13% Similarity=0.116 Sum_probs=69.6
Q ss_pred ccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCccccc
Q 005892 28 IKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERG 107 (671)
Q Consensus 28 l~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~ 107 (671)
-.++.++ ....++.|.|||.+||||+||.++=+.. | ...|-...-....+. ..+.+. -..|.......
T Consensus 583 pNdi~l~---~~~~~~iITGPNmgGKSt~lrqvali~i--m-Aq~G~~VPA~~a~i~---~~D~If---trig~~d~i~~ 650 (840)
T TIGR01070 583 PNDLEMA---HNRRMLLITGPNMGGKSTYMRQTALIAL--L-AQIGSFVPAESAELP---LFDRIF---TRIGASDDLAS 650 (840)
T ss_pred eeeeecC---CCccEEEEECCCCCCchHHHHHHHHHHH--H-HhcCCCccchheEec---cccEEE---EecCcccchhc
Confidence 3444444 3456899999999999999998763321 1 233421110011110 001110 01111111111
Q ss_pred ccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 108 EDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
..+.|+-...-++..|- .++|+||+..|.++.. +..+...+.+.+.+ ..|..+||+||.++...
T Consensus 651 -g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~d--g~aia~ai~e~l~~---~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 651 -GRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYD--GLALAWAIAEYLHE---HIRAKTLFATHYFELTA 719 (840)
T ss_pred -CcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhH--HHHHHHHHHHHHHh---cCCCEEEEEcCchHHHH
Confidence 12455444444444443 7999999988877665 22233344444443 24789999999987653
No 464
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.46 E-value=0.00031 Score=64.24 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+..+.|.||+|+|||||++.+....
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 346689999999999999999999987
No 465
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.43 E-value=0.00024 Score=76.44 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
.++++++|+||||+||||++..|++.. .+..|+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l----~~~g~~ 144 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY----KAQGKK 144 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH----HhcCCe
Confidence 468899999999999999999999998 555444
No 466
>COG1159 Era GTPase [General function prediction only]
Probab=97.42 E-value=0.00022 Score=74.84 Aligned_cols=123 Identities=21% Similarity=0.267 Sum_probs=74.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHH
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 118 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv 118 (671)
+..+|||+|+..+|||||+|.|.|... ...|-..|||+....+-....+....+.|++|+....+ ....+|.+.+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki---sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~--~l~~~m~~~a 79 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI---SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH--ALGELMNKAA 79 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce---EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch--HHHHHHHHHH
Confidence 444899999999999999999999864 34555566776443332222345667789999877632 2234455555
Q ss_pred HHHHHHHHHHhccc-cccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 119 LFALAVSDIVLINM-WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 119 ~iAlAL~evLlLDE-pt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
--++.=+|++++=- .+.+.++. -..+++.+++. ++-+|++..-.+.+.
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~-------d~~il~~lk~~----~~pvil~iNKID~~~ 128 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPG-------DEFILEQLKKT----KTPVILVVNKIDKVK 128 (298)
T ss_pred HHHhccCcEEEEEEeccccCCcc-------HHHHHHHHhhc----CCCeEEEEEccccCC
Confidence 55544457766522 22223432 45566666652 345666665555443
No 467
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.39 E-value=0.00035 Score=77.01 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=90.0
Q ss_pred ccccccCCccEEEEEcCCCCChHHHHHHHh-cccCCCCCCCCCe--eecc-CceEeccccC-----CCcchhhhhcc-CC
Q 005892 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLF-GTNFREMDAFKGR--SQTT-KGIWMARCAG-----IEPCTLIMDLE-GT 101 (671)
Q Consensus 32 ~l~~~g~~geivaIlGpNGSGKSTLLn~L~-Gl~f~~m~p~sG~--~q~~-~gi~~~~~~~-----~~~~~~vld~~-g~ 101 (671)
.+++ .+| |+.|+|.+--||||||++|- |.. +. -|-.|| +.+. ..+.+.-..+ .+-..|+-++. |.
T Consensus 239 GMGI--p~G-vTlIvGGGyHGKSTLL~Ale~GVY-nH-ipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~ 313 (448)
T PF09818_consen 239 GMGI--PKG-VTLIVGGGYHGKSTLLEALERGVY-NH-IPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGK 313 (448)
T ss_pred EEee--CCc-EEEEECCCCccHHHHHHHHHhccc-CC-CCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCC
Confidence 4566 777 99999999999999999996 665 11 144465 1111 1111111001 11111222222 22
Q ss_pred Ccc-cccccchHHHHHHHHHHHHHH---HHHhccccccCCCh-----hh-hh---ChhHHHHHHHHHHHhhCCCCcEEEE
Q 005892 102 DGR-ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGR-----EQ-AA---NKPLLKTVFQVMMRLFSPRKTTLMF 168 (671)
Q Consensus 102 ~~~-~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~-----~~-~~---~~~~~~~v~ell~~L~~~~g~TIl~ 168 (671)
+.. ..-+..++-.-|.+.|.-|+- ++||+||=|++-.. .. .. +..-..-+.+.++.|.++.|.+.|+
T Consensus 314 dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIl 393 (448)
T PF09818_consen 314 DTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTIL 393 (448)
T ss_pred CCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEE
Confidence 211 112344556778888888887 99999998876321 10 00 1111344566677777778999999
Q ss_pred EecCCCcccccccchhhhhc
Q 005892 169 VIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 169 VtHDl~~~~~~~~~~~ll~~ 188 (671)
|+--.+.-...+|++++|.+
T Consensus 394 V~Ggsgdy~~vAD~Vi~Md~ 413 (448)
T PF09818_consen 394 VVGGSGDYFDVADRVIMMDE 413 (448)
T ss_pred EeccchhhHhhCCEEEEecC
Confidence 99888776667888777765
No 468
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.38 E-value=9.8e-05 Score=93.41 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=57.0
Q ss_pred cchHHHHH------HHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhC----CCCcEEEEEecCCCc
Q 005892 109 DDTAFEKQ------SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS----PRKTTLMFVIRDKTR 175 (671)
Q Consensus 109 ~~~~~qrQ------rv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~----~~g~TIl~VtHDl~~ 175 (671)
..+++|+| |+++|++++ ++|+|||||++||+.. ...+.+.|.++.. ..|.+||+||||+.+
T Consensus 1199 ~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~------~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~ 1272 (1311)
T TIGR00606 1199 RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDREN------IESLAHALVEIIKSRSQQRNFQLLVITHDEDF 1272 (1311)
T ss_pred CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHH------HHHHHHHHHHHHHhhhhccCCeEEEEecCHHH
Confidence 56889999 999999999 9999999999999998 8888888777632 248899999999998
Q ss_pred cccccc
Q 005892 176 TPLENL 181 (671)
Q Consensus 176 ~~~~~~ 181 (671)
+..+|.
T Consensus 1273 ~~~~~~ 1278 (1311)
T TIGR00606 1273 VELLGR 1278 (1311)
T ss_pred HHHHhh
Confidence 876653
No 469
>PRK03918 chromosome segregation protein; Provisional
Probab=97.38 E-value=9.8e-05 Score=89.77 Aligned_cols=72 Identities=10% Similarity=0.060 Sum_probs=57.3
Q ss_pred ccchHHHHHHHHHHH------HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccc
Q 005892 108 EDDTAFEKQSALFAL------AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (671)
Q Consensus 108 ~~~~~~qrQrv~iAl------AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~ 178 (671)
...+++|+++++||+ +++ +++|+||||++||+.. +..+.+++..+... +.+||+||||.+.. .
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~------~~~l~~~l~~~~~~-~~~iiiith~~~~~-~ 858 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEER------RRKLVDIMERYLRK-IPQVIIVSHDEELK-D 858 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHH------HHHHHHHHHHHHhc-CCEEEEEECCHHHH-H
Confidence 345788999766654 333 7899999999999998 99999999887654 78999999998754 5
Q ss_pred cccchhhhh
Q 005892 179 ENLEPVLRE 187 (671)
Q Consensus 179 ~~~~~~ll~ 187 (671)
.|++++++.
T Consensus 859 ~~d~~~~l~ 867 (880)
T PRK03918 859 AADYVIRVS 867 (880)
T ss_pred hCCeEEEEE
Confidence 678777765
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.37 E-value=0.00028 Score=76.74 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++.++.|.||+||||||+|+.|.+..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 457799999999999999999999876
No 471
>PRK00098 GTPase RsgA; Reviewed
Probab=97.35 E-value=0.0002 Score=76.39 Aligned_cols=34 Identities=35% Similarity=0.367 Sum_probs=28.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (671)
..|.+++++|+||+|||||+|.|.|.. .+.+|.+
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~----~~~~g~v 195 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDL----ELKTGEI 195 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCc----CCCCcce
Confidence 356799999999999999999999987 5666653
No 472
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.34 E-value=0.00012 Score=77.61 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++||.||||||||||+++|.+++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 599999999999999999999998
No 473
>PRK01156 chromosome segregation protein; Provisional
Probab=97.32 E-value=0.00014 Score=88.77 Aligned_cols=74 Identities=5% Similarity=0.062 Sum_probs=56.8
Q ss_pred ccchHHHHHHHHHH------HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCC-C-cEEEEEecCCCcc
Q 005892 108 EDDTAFEKQSALFA------LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-K-TTLMFVIRDKTRT 176 (671)
Q Consensus 108 ~~~~~~qrQrv~iA------lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~-g-~TIl~VtHDl~~~ 176 (671)
...+++|++++++| ++++ +++++||||++||+.. ...+.+++....... | .++|+||||++.+
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~------~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~ 873 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDR------RTNLKDIIEYSLKDSSDIPQVIMISHHRELL 873 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCCCeEEEEECchHHH
Confidence 34678899998765 3443 8899999999999998 888888887543332 3 4899999999876
Q ss_pred cccccchhhhhc
Q 005892 177 PLENLEPVLRED 188 (671)
Q Consensus 177 ~~~~~~~~ll~~ 188 (671)
. .|++++.+..
T Consensus 874 ~-~~d~ii~~~~ 884 (895)
T PRK01156 874 S-VADVAYEVKK 884 (895)
T ss_pred H-hcCeEEEEEe
Confidence 4 6888777664
No 474
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.31 E-value=0.00017 Score=70.53 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
|.+++|+||||||||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 5689999999999999999999976
No 475
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.30 E-value=0.0002 Score=68.92 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=26.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++|+|++|||||||++.|.|..+....|+.|
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g 47 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQG 47 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCC
Confidence 58999999999999999999986443456656
No 476
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.30 E-value=0.00052 Score=76.50 Aligned_cols=56 Identities=23% Similarity=0.097 Sum_probs=44.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++...++..|... ..++..+ +.+ .+|+.++|+|+||+||||||++|+|.. .++.|
T Consensus 129 ~~~r~~v~~~l~tG--i~aID~l-l~i--~~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~ 184 (433)
T PRK07594 129 AMVRQPITQPLMTG--IRAIDSV-ATC--GEGQRVGIFSAPGVGKSTLLAMLCNAP----DADSN 184 (433)
T ss_pred ceeccCHhheeCCC--ceeeeee-eec--CCCCEEEEECCCCCCccHHHHHhcCCC----CCCEE
Confidence 46667777777432 3577777 778 899999999999999999999999988 67655
No 477
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.30 E-value=0.00018 Score=70.28 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
|++++|+||||||||||++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999987
No 478
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.29 E-value=0.0003 Score=73.09 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=29.5
Q ss_pred cccccccccccccCC-ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 25 EHFIKEVKLSDCGLS-YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~-geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..++..+.... .+ ..++.|.||+|+|||||++.+++..
T Consensus 29 ~~~~~~l~~~~--~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 29 KRAMAYLEYGL--SQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHHH--hcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 34555555554 33 4489999999999999999999877
No 479
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.29 E-value=0.00033 Score=69.71 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-++|+|++|+|||||+|.|+|-.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 37999999999999999999975
No 480
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.28 E-value=0.00076 Score=66.29 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl 63 (671)
.|+|+|++|+|||||+|.|.|-
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 481
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=97.27 E-value=0.0006 Score=73.95 Aligned_cols=148 Identities=17% Similarity=0.083 Sum_probs=88.7
Q ss_pred ccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe--eecc---------CceEeccccCCCcchhhhhccC
Q 005892 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR--SQTT---------KGIWMARCAGIEPCTLIMDLEG 100 (671)
Q Consensus 32 ~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~--~q~~---------~gi~~~~~~~~~~~~~vld~~g 100 (671)
.+++ .+| |+.|.|+|--|||||+++|..=..+. -|-.|+ +.++ .+.++.+. +-..|+..+.|
T Consensus 237 gmgI--p~g-it~ItG~nfhGKTTLl~Aie~gvdnH-ipGDGRE~vVTd~~lakaeae~gr~vsg~---D~SlFi~~LPg 309 (554)
T COG3044 237 GMGI--PQG-ITLITGGNFHGKTTLLTAIERGVDNH-IPGDGRERVVTDVKLAKAEAEEGRCVSGL---DLSLFINHLPG 309 (554)
T ss_pred ccCC--Ccc-eEEEecCCccchhHHHHHHHhccccc-CCCCCceEEEehhhhhhhhcccceeeecc---chHHHHHhCCC
Confidence 4567 777 99999999999999999997433222 244465 1111 13444432 22223333332
Q ss_pred C---CcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhh----h---hChhHHHHHHHHHHHhhCCCCcEEE
Q 005892 101 T---DGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQ----A---ANKPLLKTVFQVMMRLFSPRKTTLM 167 (671)
Q Consensus 101 ~---~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~----~---~~~~~~~~v~ell~~L~~~~g~TIl 167 (671)
. +..-+ .+.++-+.+...|-.++- ..|++||=+++..... + .+......+.+.+.++... +.++|
T Consensus 310 gkdTp~fvt-gdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd-~iS~i 387 (554)
T COG3044 310 GKDTPDFVT-GDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGD-LISTI 387 (554)
T ss_pred CCCCccccc-CCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccC-ceEEE
Confidence 2 22222 344566777777777877 8999999877643211 0 0122233344444444322 48999
Q ss_pred EEecCCCcccccccchhhhhc
Q 005892 168 FVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 168 ~VtHDl~~~~~~~~~~~ll~~ 188 (671)
.|+--++.....+|+.++|++
T Consensus 388 aVtgglddlla~aDRaIvMeD 408 (554)
T COG3044 388 AVTGGLDDLLAVADRAIVMED 408 (554)
T ss_pred EEeccchhhhhhcceEEEecc
Confidence 999998776667888888877
No 482
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.26 E-value=0.00023 Score=81.01 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=25.1
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHH--hccc
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHL--FGTN 64 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L--~Gl~ 64 (671)
++ .+|.++.|.||+|||||||...+ .|+.
T Consensus 17 Gl--p~g~~~Li~G~pGsGKT~la~qfl~~g~~ 47 (484)
T TIGR02655 17 GL--PIGRSTLVSGTSGTGKTLFSIQFLYNGII 47 (484)
T ss_pred CC--CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 67 78999999999999999999876 4655
No 483
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.26 E-value=0.00025 Score=64.23 Aligned_cols=60 Identities=28% Similarity=0.415 Sum_probs=34.3
Q ss_pred EEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCccc
Q 005892 43 VSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 105 (671)
Q Consensus 43 vaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~ 105 (671)
|+|+|+.|+|||||+|.|+|.......+..| ++................+.|.+|+....
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPG---TTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTT---SSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred EEEECCCCCCHHHHHHHHhcccccccccccc---ceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 7999999999999999999953110011222 33333221111112233577888876543
No 484
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.22 E-value=0.00015 Score=73.91 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++||.||||||||||++.|.+++
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999988
No 485
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.22 E-value=0.00051 Score=69.57 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=55.4
Q ss_pred EEEEcCCCCChHHHHHHHhcccCCCCCCCCCe--eeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHHHH
Q 005892 43 VSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR--SQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 120 (671)
Q Consensus 43 vaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~--~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~i 120 (671)
+.|+|++||||||+.|.|.|-. ...+|. ...+................+.|.+|+....... ... .+.+.-
T Consensus 3 IlllG~tGsGKSs~~N~ilg~~----~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~--~~~-~~~i~~ 75 (212)
T PF04548_consen 3 ILLLGKTGSGKSSLGNSILGKE----VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD--EEI-IREIKR 75 (212)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS-----SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH--HHH-HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc----ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH--HHH-HHHHHH
Confidence 6899999999999999999976 222221 1112121111111122355677888875433211 111 111211
Q ss_pred HHHHH----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCC--CCcEEEEEecC
Q 005892 121 ALAVS----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRD 172 (671)
Q Consensus 121 AlAL~----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~--~g~TIl~VtHD 172 (671)
++.+. .++|+=-|...+... -+.+++.+.+++.+ .+-+||+.||-
T Consensus 76 ~l~~~~~g~ha~llVi~~~r~t~~-------~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 76 CLSLCSPGPHAFLLVIPLGRFTEE-------DREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp HHHHTTT-ESEEEEEEETTB-SHH-------HHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred HHHhccCCCeEEEEEEecCcchHH-------HHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 22222 344443444434332 45566667766643 24577777774
No 486
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.19 E-value=0.00027 Score=66.53 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=22.8
Q ss_pred EEEEcCCCCChHHHHHHHh--cccCCCCCCCCCe
Q 005892 43 VSIMGPQSSGKSTLLNHLF--GTNFREMDAFKGR 74 (671)
Q Consensus 43 vaIlGpNGSGKSTLLn~L~--Gl~f~~m~p~sG~ 74 (671)
++|+|++|||||||+|.|. +.. .+.+|+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~----~~~~~~ 31 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL----ARTSKT 31 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce----eeecCC
Confidence 6899999999999999999 444 445554
No 487
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.18 E-value=0.0002 Score=71.36 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++||.||+|||||||.++|.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 488
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.14 E-value=0.00047 Score=75.80 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=44.4
Q ss_pred eEEEEeeeEEecccccccccc-----------ccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 9 STQLIDGDGTFNVSGIEHFIK-----------EVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~-----------~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.++|++..|... ..++. ++.+.+ .+|+.++|+||.|+|||||++.|+...
T Consensus 130 ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pi--g~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 130 RVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPI--GKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CeEEEEeeecCCCc--cceeecCccccceeeeeeEEEe--CCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 58999999999653 23453 778888 899999999999999999999999876
No 489
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.14 E-value=0.00037 Score=79.19 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=45.3
Q ss_pred EEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 12 i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
+.|++..|+. ..+...+++.. ..|+.++|+||||+|||||+++|.|++ +|.+|.
T Consensus 187 ~~d~~~v~Gq---~~~~~al~laa--~~G~~llliG~~GsGKTtLak~L~gll----pp~~g~ 240 (506)
T PRK09862 187 QHDLSDVIGQ---EQGKRGLEITA--AGGHNLLLIGPPGTGKTMLASRINGLL----PDLSNE 240 (506)
T ss_pred ccCeEEEECc---HHHHhhhheec--cCCcEEEEECCCCCcHHHHHHHHhccC----CCCCCc
Confidence 3477777744 35777788888 789999999999999999999999999 788886
No 490
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.14 E-value=0.00092 Score=68.08 Aligned_cols=28 Identities=18% Similarity=0.161 Sum_probs=24.2
Q ss_pred ccccccCCccEEEEEcCCCCChHHHHHHHh
Q 005892 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLF 61 (671)
Q Consensus 32 ~l~~~g~~geivaIlGpNGSGKSTLLn~L~ 61 (671)
.-++ ++|+++.|.||+|||||||...++
T Consensus 14 ~GGi--~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 14 EGGI--PRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred cCCC--cCCeEEEEECCCCCChHHHHHHHH
Confidence 3467 889999999999999999988655
No 491
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.13 E-value=0.00085 Score=68.21 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.6
Q ss_pred cccccCCccEEEEEcCCCCChHHHHHHHh
Q 005892 33 LSDCGLSYAVVSIMGPQSSGKSTLLNHLF 61 (671)
Q Consensus 33 l~~~g~~geivaIlGpNGSGKSTLLn~L~ 61 (671)
-++ .+|.++.|.|++|+|||||.-.++
T Consensus 11 gGi--~~g~~~li~G~~G~GKt~~~~~~~ 37 (224)
T TIGR03880 11 GGF--PEGHVIVVIGEYGTGKTTFSLQFL 37 (224)
T ss_pred CCC--CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356 789999999999999999966554
No 492
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.13 E-value=0.00032 Score=73.91 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++||+|+||||||||++.|.|++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999999998
No 493
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.11 E-value=0.00094 Score=80.61 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=41.0
Q ss_pred HHHhccccccCCC-hhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 126 DIVLINMWCHDIG-REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 126 evLlLDEpt~~LD-~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
.++++|||...|| +.. ...+.+.++.+++ .|..++++||+++.+...-.-..++.+
T Consensus 644 ~il~iDE~w~~L~~~~~------~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~s~~~~~i~~~ 700 (800)
T PRK13898 644 SMIVLDEAWALIDNPVF------APKIKDWLKVLRK-LNTFVIFATQSVEDASKSAISDTLVQQ 700 (800)
T ss_pred cEEEEeCChhhCCCHHH------HHHHHHHHHHHHH-cCCEEEEEeCCHHHHHhChhHHHHHHh
Confidence 5778999999888 555 7788888888865 488999999999766532223444554
No 494
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.10 E-value=0.00096 Score=74.61 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=35.6
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++..+ +.+ .+|++++|+|+||+|||||+++|+|.. .++.|
T Consensus 152 ~~ID~l-~~i--~~Gq~~~I~G~sG~GKTtLl~~ia~~~----~~d~~ 192 (441)
T PRK09099 152 RIVDGL-MTL--GEGQRMGIFAPAGVGKSTLMGMFARGT----QCDVN 192 (441)
T ss_pred eeccce-eee--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCeE
Confidence 466777 777 799999999999999999999999988 67665
No 495
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.10 E-value=0.00088 Score=74.52 Aligned_cols=37 Identities=30% Similarity=0.154 Sum_probs=33.2
Q ss_pred cccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 31 VKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 31 v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
..+.+ .+|+.++|+|+||+|||||+++|+|.. .|+.|
T Consensus 133 ~~~~i--~~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~g 169 (418)
T TIGR03498 133 TFLPL--CRGQRLGIFAGSGVGKSTLLSMLARNT----DADVV 169 (418)
T ss_pred eeccc--cCCcEEEEECCCCCChHHHHHHHhCCC----CCCEE
Confidence 46777 889999999999999999999999998 67766
No 496
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.09 E-value=0.00033 Score=78.04 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=33.3
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++..+ +.+ .+|++++|+|+||+|||||+++|+|..
T Consensus 144 ~aID~l-l~I--~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 144 NAINGL-LTI--GKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred eeccce-EeE--ecceEEEEECCCCCCccHHHHHHhccc
Confidence 577788 888 899999999999999999999999988
No 497
>PRK15494 era GTPase Era; Provisional
Probab=97.08 E-value=0.00052 Score=74.60 Aligned_cols=53 Identities=26% Similarity=0.294 Sum_probs=43.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCcc-------EEEEEcCCCCChHHHHHHHhcccC
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYA-------VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~ge-------ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++..++++.|.. ....+..+++.+ ..|+ .++|+|+.|+|||||+|.|.|-.+
T Consensus 18 ~~~~~~~~~~~~~--~~~~~~~~~~~~--~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~ 77 (339)
T PRK15494 18 DTEALAAAVREDA--STGSTSKLPLEV--KFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKL 77 (339)
T ss_pred ccccccccccCCC--CcccccCCcccc--ccccccccceeEEEEEcCCCCCHHHHHHHHhCCce
Confidence 3677888888863 355777777776 7777 899999999999999999999764
No 498
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.07 E-value=0.00039 Score=69.94 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++.+++|.|++|||||||.+.|.+.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999987
No 499
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.06 E-value=0.00069 Score=73.21 Aligned_cols=25 Identities=44% Similarity=0.587 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+..++|+|++|+|||||++.|++..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999999999875
No 500
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.02 E-value=0.00064 Score=76.70 Aligned_cols=30 Identities=27% Similarity=0.161 Sum_probs=26.7
Q ss_pred cccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 33 LSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 33 l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-++ .+|+++.|.|++|+|||||+..+++-.
T Consensus 89 GGi--~~GsvilI~G~pGsGKTTL~lq~a~~~ 118 (454)
T TIGR00416 89 GGI--VPGSLILIGGDPGIGKSTLLLQVACQL 118 (454)
T ss_pred CCc--cCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367 889999999999999999999987755
Done!