Query 005892
Match_columns 671
No_of_seqs 577 out of 1961
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 7.1E-31 2.4E-35 273.6 7.4 185 8-207 6-237 (275)
2 4g1u_C Hemin import ATP-bindin 100.0 2E-30 6.9E-35 269.0 9.3 193 7-215 9-249 (266)
3 3tui_C Methionine import ATP-b 100.0 2.4E-30 8.1E-35 278.7 7.2 186 6-204 21-254 (366)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 3.1E-30 1.1E-34 277.4 7.1 181 8-205 3-230 (359)
5 3rlf_A Maltose/maltodextrin im 100.0 3.5E-30 1.2E-34 278.9 6.7 181 8-204 2-224 (381)
6 1g6h_A High-affinity branched- 100.0 2.6E-29 8.9E-34 259.3 8.9 177 7-200 5-239 (257)
7 3tif_A Uncharacterized ABC tra 100.0 2.8E-29 9.5E-34 255.8 7.8 179 9-201 1-232 (235)
8 2olj_A Amino acid ABC transpor 100.0 2.6E-29 9E-34 260.2 6.6 180 7-203 22-248 (263)
9 2nq2_C Hypothetical ABC transp 100.0 5.9E-29 2E-33 256.2 8.9 190 8-214 3-228 (253)
10 1vpl_A ABC transporter, ATP-bi 100.0 6.6E-29 2.2E-33 256.2 8.3 180 6-202 12-234 (256)
11 1g29_1 MALK, maltose transport 100.0 5.2E-29 1.8E-33 269.8 7.5 181 8-204 2-230 (372)
12 2yyz_A Sugar ABC transporter, 100.0 3.7E-29 1.3E-33 269.5 6.3 180 9-204 3-224 (359)
13 2it1_A 362AA long hypothetical 100.0 4.3E-29 1.5E-33 269.3 6.8 180 9-204 3-224 (362)
14 1b0u_A Histidine permease; ABC 99.9 8.9E-29 3E-33 256.1 8.4 179 8-203 5-242 (262)
15 2pcj_A ABC transporter, lipopr 99.9 6.8E-29 2.3E-33 251.1 7.1 173 7-197 2-222 (224)
16 1oxx_K GLCV, glucose, ABC tran 99.9 4E-29 1.4E-33 269.0 5.3 180 9-204 3-231 (353)
17 1ji0_A ABC transporter; ATP bi 99.9 8.5E-29 2.9E-33 253.0 6.8 179 8-203 5-228 (240)
18 1z47_A CYSA, putative ABC-tran 99.9 7.6E-29 2.6E-33 266.6 6.4 182 7-204 12-236 (355)
19 2ihy_A ABC transporter, ATP-bi 99.9 1.6E-28 5.6E-33 256.3 8.4 190 7-213 19-262 (279)
20 1v43_A Sugar-binding transport 99.9 6.4E-29 2.2E-33 268.9 5.1 182 7-204 9-232 (372)
21 2yz2_A Putative ABC transporte 99.9 4.1E-28 1.4E-32 251.6 9.9 182 9-204 2-228 (266)
22 2onk_A Molybdate/tungstate ABC 99.9 3.3E-28 1.1E-32 248.7 6.3 176 9-203 1-216 (240)
23 2d2e_A SUFC protein; ABC-ATPas 99.9 1.2E-27 4.1E-32 245.9 9.8 174 9-199 3-229 (250)
24 3d31_A Sulfate/molybdate ABC t 99.9 2.5E-28 8.5E-33 262.1 4.6 180 9-205 1-219 (348)
25 2cbz_A Multidrug resistance-as 99.9 1.8E-27 6E-32 242.8 9.4 178 8-202 2-216 (237)
26 2ixe_A Antigen peptide transpo 99.9 2.8E-27 9.7E-32 246.0 10.2 180 8-202 15-244 (271)
27 2qi9_C Vitamin B12 import ATP- 99.9 1.1E-27 3.8E-32 246.1 6.3 174 8-203 3-222 (249)
28 2zu0_C Probable ATP-dependent 99.9 5.6E-27 1.9E-31 243.3 11.6 180 7-201 18-252 (267)
29 2ff7_A Alpha-hemolysin translo 99.9 7.1E-27 2.4E-31 239.8 11.1 177 9-203 7-232 (247)
30 2pze_A Cystic fibrosis transme 99.9 3.4E-27 1.2E-31 239.4 7.4 179 8-203 5-218 (229)
31 1mv5_A LMRA, multidrug resista 99.9 7.5E-27 2.5E-31 238.9 7.6 175 9-202 1-225 (243)
32 3nh6_A ATP-binding cassette SU 99.9 6.4E-27 2.2E-31 247.1 6.7 176 9-203 53-277 (306)
33 2ghi_A Transport protein; mult 99.9 1.6E-26 5.6E-31 238.8 8.8 178 8-202 16-241 (260)
34 2pjz_A Hypothetical protein ST 99.9 6.1E-26 2.1E-30 234.9 10.7 176 9-203 1-215 (263)
35 1sgw_A Putative ABC transporte 99.9 1.1E-25 3.7E-30 226.2 10.5 166 8-192 9-210 (214)
36 3gd7_A Fusion complex of cysti 99.9 9.6E-26 3.3E-30 245.4 6.8 179 8-204 18-243 (390)
37 2bbs_A Cystic fibrosis transme 99.9 4.7E-25 1.6E-29 231.4 4.3 174 8-202 39-246 (290)
38 4a82_A Cystic fibrosis transme 99.9 2.2E-24 7.7E-29 246.5 7.8 179 9-204 339-565 (578)
39 3qf4_B Uncharacterized ABC tra 99.9 2.2E-24 7.7E-29 247.5 7.0 176 9-203 354-578 (598)
40 3b5x_A Lipid A export ATP-bind 99.9 1.2E-23 4E-28 240.8 12.6 179 9-204 341-568 (582)
41 2yl4_A ATP-binding cassette SU 99.9 4.5E-24 1.5E-28 244.8 8.8 178 10-203 342-570 (595)
42 3qf4_A ABC transporter, ATP-bi 99.9 3.3E-24 1.1E-28 245.5 7.2 178 9-203 341-566 (587)
43 3b60_A Lipid A export ATP-bind 99.9 1.2E-23 4.3E-28 240.6 10.8 177 9-203 341-567 (582)
44 1yqt_A RNAse L inhibitor; ATP- 99.9 3.9E-23 1.3E-27 234.2 7.3 180 8-203 286-493 (538)
45 3bk7_A ABC transporter ATP-bin 99.9 5.3E-23 1.8E-27 235.9 8.0 180 8-203 356-563 (607)
46 3ozx_A RNAse L inhibitor; ATP 99.9 1.1E-22 3.8E-27 230.3 8.0 177 8-200 268-474 (538)
47 3j16_B RLI1P; ribosome recycli 99.9 5.8E-23 2E-27 235.3 5.4 178 13-204 350-560 (608)
48 4f4c_A Multidrug resistance pr 99.9 1.1E-22 3.8E-27 251.8 8.2 179 9-204 1076-1305(1321)
49 3g5u_A MCG1178, multidrug resi 99.9 3.7E-22 1.3E-26 246.5 9.8 180 9-204 1030-1259(1284)
50 3bk7_A ABC transporter ATP-bin 99.9 5.1E-22 1.8E-26 227.7 9.8 164 9-188 83-303 (607)
51 3ux8_A Excinuclease ABC, A sub 99.8 7.2E-22 2.5E-26 229.5 9.0 89 107-204 200-299 (670)
52 1yqt_A RNAse L inhibitor; ATP- 99.8 7.5E-22 2.6E-26 223.6 8.8 163 10-188 21-233 (538)
53 3g5u_A MCG1178, multidrug resi 99.8 4.8E-22 1.6E-26 245.5 6.6 180 9-204 387-614 (1284)
54 4f4c_A Multidrug resistance pr 99.8 1.2E-21 4.2E-26 242.4 9.3 180 9-204 415-642 (1321)
55 2iw3_A Elongation factor 3A; a 99.8 4.8E-22 1.7E-26 236.2 5.0 172 8-197 670-981 (986)
56 3j16_B RLI1P; ribosome recycli 99.8 2.1E-21 7.1E-26 222.5 7.1 166 9-188 69-296 (608)
57 3ozx_A RNAse L inhibitor; ATP 99.8 2.5E-20 8.5E-25 211.0 9.1 158 14-188 4-212 (538)
58 3q5d_A Atlastin-1; G protein, 99.8 1.4E-18 4.6E-23 191.9 21.4 335 9-369 34-432 (447)
59 2iw3_A Elongation factor 3A; a 99.8 5.7E-20 2E-24 218.5 10.5 174 9-202 435-634 (986)
60 3ux8_A Excinuclease ABC, A sub 99.8 2.1E-20 7.1E-25 217.2 5.9 88 107-203 541-640 (670)
61 4gp7_A Metallophosphoesterase; 99.7 9.7E-20 3.3E-24 175.8 -1.9 137 30-177 1-163 (171)
62 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.5E-19 5E-24 201.0 -3.4 167 8-201 117-336 (460)
63 2vf7_A UVRA2, excinuclease ABC 99.7 1.2E-18 4.3E-23 205.1 4.0 89 108-204 729-828 (842)
64 3pih_A Uvrabc system protein A 99.7 1.3E-18 4.6E-23 206.4 3.2 88 108-204 804-903 (916)
65 2r6f_A Excinuclease ABC subuni 99.7 1.1E-17 3.7E-22 197.8 6.4 89 108-204 844-943 (972)
66 2ygr_A Uvrabc system protein A 99.7 2E-17 6.8E-22 196.2 7.9 88 108-203 862-960 (993)
67 4aby_A DNA repair protein RECN 99.6 1.3E-16 4.6E-21 174.0 6.1 77 110-196 296-381 (415)
68 3b85_A Phosphate starvation-in 99.6 2.6E-17 9E-22 164.4 -2.8 127 26-177 14-162 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 6.2E-16 2.1E-20 167.1 5.9 77 109-194 279-364 (365)
70 1tq4_A IIGP1, interferon-induc 99.5 1.8E-15 6.2E-20 165.7 5.3 145 26-184 37-248 (413)
71 1ye8_A Protein THEP1, hypothet 99.5 3E-15 1E-19 145.8 3.9 131 42-194 2-159 (178)
72 2ehv_A Hypothetical protein PH 99.5 2.5E-15 8.4E-20 151.5 3.0 159 9-187 6-206 (251)
73 3thx_A DNA mismatch repair pro 99.5 1.4E-14 4.7E-19 172.8 9.5 165 9-201 631-811 (934)
74 2o8b_B DNA mismatch repair pro 99.5 6.2E-15 2.1E-19 177.7 5.4 171 8-199 749-938 (1022)
75 1f5n_A Interferon-induced guan 99.5 1.3E-10 4.3E-15 132.4 40.2 334 38-394 36-423 (592)
76 2obl_A ESCN; ATPase, hydrolase 99.5 4.9E-15 1.7E-19 159.0 1.8 169 8-202 44-254 (347)
77 1znw_A Guanylate kinase, GMP k 99.5 3E-15 1E-19 148.4 -0.4 61 126-188 143-203 (207)
78 2pt7_A CAG-ALFA; ATPase, prote 99.5 7.5E-15 2.6E-19 156.5 1.5 128 27-191 160-291 (330)
79 4a74_A DNA repair and recombin 99.4 1.8E-14 6.3E-19 143.2 2.5 149 34-188 21-199 (231)
80 3szr_A Interferon-induced GTP- 99.4 3.3E-12 1.1E-16 146.7 21.3 183 8-203 9-228 (608)
81 2dpy_A FLII, flagellum-specifi 99.4 2.7E-14 9.3E-19 157.8 3.6 169 8-203 130-344 (438)
82 1tf7_A KAIC; homohexamer, hexa 99.4 2.6E-14 8.9E-19 161.4 2.5 168 9-188 12-209 (525)
83 1e69_A Chromosome segregation 99.4 4.9E-13 1.7E-17 141.7 12.1 81 109-199 219-309 (322)
84 3thx_B DNA mismatch repair pro 99.4 8E-14 2.7E-18 165.8 3.0 140 25-182 660-804 (918)
85 2w0m_A SSO2452; RECA, SSPF, un 99.4 3.6E-13 1.2E-17 133.6 5.4 145 27-188 11-191 (235)
86 2eyu_A Twitching motility prot 99.3 3.6E-13 1.2E-17 139.0 5.0 127 26-187 15-146 (261)
87 1tf7_A KAIC; homohexamer, hexa 99.3 4.2E-13 1.4E-17 151.6 5.2 145 32-191 275-444 (525)
88 3b9q_A Chloroplast SRP recepto 99.3 3.1E-13 1E-17 142.4 3.4 148 29-197 91-281 (302)
89 1cr0_A DNA primase/helicase; R 99.3 4.7E-13 1.6E-17 139.6 4.6 154 26-192 23-237 (296)
90 1wb9_A DNA mismatch repair pro 99.3 1.1E-12 3.9E-17 154.5 5.2 150 26-196 596-751 (800)
91 2og2_A Putative signal recogni 99.3 1.5E-12 5.1E-17 140.2 5.0 147 30-197 149-338 (359)
92 2v9p_A Replication protein E1; 99.3 4.1E-15 1.4E-19 156.7 -15.0 147 9-201 101-264 (305)
93 1z6g_A Guanylate kinase; struc 99.2 2.8E-13 9.4E-18 135.7 -2.5 146 25-185 10-206 (218)
94 3sop_A Neuronal-specific septi 99.2 3E-13 1E-17 140.2 -2.4 119 42-176 4-153 (270)
95 1ewq_A DNA mismatch repair pro 99.2 1.3E-12 4.4E-17 153.2 2.4 127 26-177 567-702 (765)
96 3qkt_A DNA double-strand break 99.2 3.1E-12 1.1E-16 136.5 5.1 70 110-187 249-327 (339)
97 2o5v_A DNA replication and rep 99.2 2.9E-11 1E-15 130.1 12.5 76 111-201 267-354 (359)
98 2qnr_A Septin-2, protein NEDD5 99.1 1.7E-12 5.7E-17 136.6 -4.0 134 13-174 2-168 (301)
99 2i3b_A HCR-ntpase, human cance 99.1 4.5E-12 1.5E-16 124.6 -1.2 136 40-195 1-168 (189)
100 3jvv_A Twitching mobility prot 99.1 3.4E-11 1.2E-15 129.5 4.8 120 38-188 121-245 (356)
101 4ido_A Atlastin-1; GTPase, GTP 99.0 3.4E-09 1.2E-13 116.6 18.0 308 38-366 65-429 (457)
102 1pzn_A RAD51, DNA repair and r 99.0 1.9E-10 6.3E-15 123.5 7.6 159 32-197 125-309 (349)
103 2qag_C Septin-7; cell cycle, c 99.0 3.7E-11 1.3E-15 131.9 0.8 142 8-176 10-180 (418)
104 1pui_A ENGB, probable GTP-bind 99.0 1.7E-10 5.8E-15 112.8 4.7 139 9-161 3-199 (210)
105 1rj9_A FTSY, signal recognitio 99.0 8.6E-11 2.9E-15 123.8 2.5 122 39-176 101-261 (304)
106 3ec2_A DNA replication protein 99.0 2.3E-10 7.8E-15 110.1 3.8 107 38-175 36-145 (180)
107 2cvh_A DNA repair and recombin 98.9 2.3E-10 7.7E-15 112.8 3.3 127 34-174 16-157 (220)
108 3aez_A Pantothenate kinase; tr 98.9 6.6E-12 2.3E-16 132.8 -8.9 116 38-176 88-231 (312)
109 3pih_A Uvrabc system protein A 98.9 3.3E-10 1.1E-14 134.8 3.8 88 107-203 462-560 (916)
110 1lw7_A Transcriptional regulat 98.9 9.4E-11 3.2E-15 126.2 -0.7 159 27-201 157-353 (365)
111 1nlf_A Regulatory protein REPA 98.9 9.2E-10 3.1E-14 113.8 5.3 129 34-176 26-184 (279)
112 1n0w_A DNA repair protein RAD5 98.9 1.3E-09 4.6E-14 108.9 5.5 137 33-176 19-177 (243)
113 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 1.6E-09 5.3E-14 102.4 5.0 73 107-187 55-136 (148)
114 1s96_A Guanylate kinase, GMP k 98.8 2.3E-10 7.8E-15 114.9 -1.4 27 38-64 14-40 (219)
115 2ewv_A Twitching motility prot 98.8 1.2E-09 4.2E-14 118.1 3.9 117 38-186 134-256 (372)
116 2r6f_A Excinuclease ABC subuni 98.8 1.4E-09 4.9E-14 128.9 4.7 89 108-204 503-601 (972)
117 3asz_A Uridine kinase; cytidin 98.8 1.1E-11 3.7E-16 122.3 -11.6 54 114-173 98-161 (211)
118 1htw_A HI0065; nucleotide-bind 98.8 3.4E-10 1.2E-14 108.0 -1.8 54 12-75 10-63 (158)
119 2kjq_A DNAA-related protein; s 98.8 3.1E-09 1.1E-13 100.1 3.8 90 39-173 35-125 (149)
120 2qag_B Septin-6, protein NEDD5 98.7 1.8E-09 6.1E-14 118.4 1.3 50 9-65 16-67 (427)
121 2vf7_A UVRA2, excinuclease ABC 98.7 4.1E-09 1.4E-13 124.5 4.2 90 107-204 377-476 (842)
122 2ygr_A Uvrabc system protein A 98.7 2.2E-09 7.5E-14 127.8 1.9 88 108-203 520-617 (993)
123 3e70_C DPA, signal recognition 98.7 5.1E-09 1.7E-13 111.4 4.4 117 38-173 127-279 (328)
124 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 4.2E-09 1.4E-13 114.5 -0.3 65 124-198 141-208 (392)
125 2gza_A Type IV secretion syste 98.6 9.2E-09 3.2E-13 110.7 2.4 132 29-188 166-301 (361)
126 2bdt_A BH3686; alpha-beta prot 98.6 6.7E-10 2.3E-14 107.6 -5.9 55 136-201 127-182 (189)
127 3lda_A DNA repair protein RAD5 98.6 2.9E-08 9.8E-13 108.3 5.7 134 33-173 173-328 (400)
128 2yhs_A FTSY, cell division pro 98.6 1.8E-08 6E-13 112.2 3.4 42 28-75 283-324 (503)
129 1udx_A The GTP-binding protein 98.4 6.9E-08 2.4E-12 105.8 3.6 139 29-181 148-317 (416)
130 3euj_A Chromosome partition pr 98.4 2E-07 6.9E-12 103.7 5.8 42 26-74 18-59 (483)
131 2qm8_A GTPase/ATPase; G protei 98.4 1.4E-08 4.8E-13 108.3 -3.8 58 9-75 29-86 (337)
132 2dr3_A UPF0273 protein PH0284; 98.4 3.5E-07 1.2E-11 91.3 6.1 46 126-175 130-175 (247)
133 2px0_A Flagellar biosynthesis 98.3 1.3E-07 4.6E-12 99.0 2.0 134 38-194 103-246 (296)
134 1sxj_E Activator 1 40 kDa subu 98.3 4.4E-07 1.5E-11 96.1 5.8 42 126-176 136-177 (354)
135 1sq5_A Pantothenate kinase; P- 98.3 4.6E-08 1.6E-12 102.9 -2.4 57 9-74 37-112 (308)
136 2jeo_A Uridine-cytidine kinase 98.3 2.5E-07 8.5E-12 93.6 3.1 38 25-64 12-49 (245)
137 3kta_B Chromosome segregation 98.2 4.6E-07 1.6E-11 87.6 3.6 69 108-185 63-138 (173)
138 4ad8_A DNA repair protein RECN 98.2 1.7E-07 5.9E-12 105.4 0.1 69 111-188 399-472 (517)
139 3tr0_A Guanylate kinase, GMP k 98.2 6.8E-07 2.3E-11 86.9 3.5 27 38-64 5-31 (205)
140 1ls1_A Signal recognition part 98.2 3.2E-06 1.1E-10 88.4 8.7 104 39-158 97-209 (295)
141 3nwj_A ATSK2; P loop, shikimat 98.1 3.9E-07 1.3E-11 93.2 1.2 53 8-64 16-72 (250)
142 3c8u_A Fructokinase; YP_612366 98.1 7.2E-07 2.5E-11 87.9 2.2 27 38-64 20-46 (208)
143 3lnc_A Guanylate kinase, GMP k 98.1 7.6E-07 2.6E-11 89.0 2.3 37 26-64 15-52 (231)
144 3a00_A Guanylate kinase, GMP k 98.1 1E-06 3.5E-11 85.2 3.1 25 40-64 1-25 (186)
145 1lvg_A Guanylate kinase, GMP k 98.1 1.1E-06 3.9E-11 86.1 3.0 26 39-64 3-28 (198)
146 2e87_A Hypothetical protein PH 98.1 2.3E-06 7.9E-11 91.6 5.4 122 40-175 167-294 (357)
147 1qhl_A Protein (cell division 98.0 3.3E-07 1.1E-11 92.4 -2.5 49 9-74 9-57 (227)
148 1oix_A RAS-related protein RAB 98.0 3.5E-06 1.2E-10 81.4 4.8 24 42-65 31-54 (191)
149 3t34_A Dynamin-related protein 98.0 4.6E-06 1.6E-10 89.3 5.6 47 13-64 12-58 (360)
150 1u0l_A Probable GTPase ENGC; p 98.0 2.8E-06 9.7E-11 88.9 3.8 34 38-75 167-200 (301)
151 3kta_A Chromosome segregation 98.0 6.4E-06 2.2E-10 78.7 5.8 37 30-73 19-55 (182)
152 2zr9_A Protein RECA, recombina 97.9 5.8E-06 2E-10 88.5 5.0 127 34-174 57-199 (349)
153 1vma_A Cell division protein F 97.9 4.8E-06 1.6E-10 87.6 4.0 33 38-74 102-134 (306)
154 1zp6_A Hypothetical protein AT 97.9 4.5E-06 1.5E-10 80.2 3.5 27 38-64 7-33 (191)
155 2rcn_A Probable GTPase ENGC; Y 97.9 6.1E-06 2.1E-10 88.6 4.4 34 38-75 213-247 (358)
156 2j41_A Guanylate kinase; GMP, 97.9 5.4E-06 1.9E-10 80.5 3.5 27 38-64 4-30 (207)
157 1kgd_A CASK, peripheral plasma 97.9 5.9E-06 2E-10 79.4 3.4 27 38-64 3-29 (180)
158 1p9r_A General secretion pathw 97.9 6.7E-06 2.3E-10 90.1 4.1 34 38-75 165-198 (418)
159 1w1w_A Structural maintenance 97.8 7.1E-06 2.4E-10 90.0 3.4 70 110-187 334-410 (430)
160 2oap_1 GSPE-2, type II secreti 97.8 4.6E-06 1.6E-10 93.7 1.9 42 27-74 249-290 (511)
161 2bbw_A Adenylate kinase 4, AK4 97.8 5.4E-06 1.9E-10 83.6 2.2 33 38-74 25-60 (246)
162 3uie_A Adenylyl-sulfate kinase 97.8 6.1E-06 2.1E-10 80.6 2.2 46 14-64 4-49 (200)
163 1t9h_A YLOQ, probable GTPase E 97.8 3.5E-06 1.2E-10 88.7 0.4 34 38-75 171-204 (307)
164 2yv5_A YJEQ protein; hydrolase 97.8 1.2E-05 4.1E-10 84.2 4.3 33 38-75 163-195 (302)
165 3auy_A DNA double-strand break 97.8 1.1E-05 3.8E-10 86.8 4.0 73 110-191 281-363 (371)
166 3hr8_A Protein RECA; alpha and 97.7 2.8E-05 9.4E-10 83.4 6.5 29 34-64 57-85 (356)
167 4eun_A Thermoresistant glucoki 97.7 1.1E-05 3.8E-10 78.7 3.1 27 38-64 27-53 (200)
168 3lxx_A GTPase IMAP family memb 97.7 2.1E-05 7.1E-10 78.8 4.4 24 42-65 31-54 (239)
169 4e22_A Cytidylate kinase; P-lo 97.7 9.7E-06 3.3E-10 82.5 1.7 34 38-75 25-61 (252)
170 3tau_A Guanylate kinase, GMP k 97.7 2.2E-05 7.6E-10 77.2 4.0 27 38-64 6-32 (208)
171 3vaa_A Shikimate kinase, SK; s 97.6 2.2E-05 7.7E-10 76.4 3.4 45 18-64 5-49 (199)
172 2vp4_A Deoxynucleoside kinase; 97.6 2.1E-05 7.2E-10 78.6 3.2 26 38-63 18-43 (230)
173 3ney_A 55 kDa erythrocyte memb 97.5 4.9E-05 1.7E-09 74.9 4.2 27 38-64 17-43 (197)
174 1rz3_A Hypothetical protein rb 97.5 2.7E-05 9.3E-10 76.1 2.3 32 38-73 20-51 (201)
175 2ce7_A Cell division protein F 97.5 8.5E-05 2.9E-09 82.6 6.4 105 43-175 52-166 (476)
176 1knq_A Gluconate kinase; ALFA/ 97.5 3.9E-05 1.3E-09 72.7 3.1 27 38-64 6-32 (175)
177 1kag_A SKI, shikimate kinase I 97.5 3.7E-05 1.3E-09 72.5 2.8 25 40-64 4-28 (173)
178 2r6a_A DNAB helicase, replicat 97.5 2.9E-05 9.8E-10 85.8 2.2 133 27-171 192-362 (454)
179 1w1w_A Structural maintenance 97.5 4.6E-05 1.6E-09 83.5 3.6 45 9-64 6-50 (430)
180 2x8a_A Nuclear valosin-contain 97.4 5.2E-05 1.8E-09 78.2 2.9 35 26-64 34-68 (274)
181 1fnn_A CDC6P, cell division co 97.4 0.00014 4.7E-09 77.3 6.1 27 38-64 40-68 (389)
182 2gj8_A MNME, tRNA modification 97.4 9.8E-05 3.4E-09 69.9 4.3 29 37-65 1-29 (172)
183 2f1r_A Molybdopterin-guanine d 97.4 2.1E-05 7.1E-10 75.7 -0.7 27 41-71 3-29 (171)
184 1svm_A Large T antigen; AAA+ f 97.4 5.3E-05 1.8E-09 81.9 2.4 38 25-64 156-193 (377)
185 3tqc_A Pantothenate kinase; bi 97.4 7.5E-05 2.6E-09 79.0 3.4 23 42-64 94-116 (321)
186 1ega_A Protein (GTP-binding pr 97.4 6.8E-05 2.3E-09 78.4 3.1 28 38-65 6-33 (301)
187 2qby_A CDC6 homolog 1, cell di 97.3 0.00011 3.8E-09 77.6 4.4 27 38-64 43-69 (386)
188 1in4_A RUVB, holliday junction 97.3 1.3E-05 4.6E-10 84.8 -3.4 53 9-64 18-75 (334)
189 3lxw_A GTPase IMAP family memb 97.3 0.00021 7.3E-09 72.2 5.5 120 42-175 23-151 (247)
190 2f9l_A RAB11B, member RAS onco 97.3 0.00018 6E-09 69.5 4.5 24 42-65 7-30 (199)
191 1nij_A Hypothetical protein YJ 97.2 0.00011 3.7E-09 77.4 3.1 34 41-74 5-42 (318)
192 3cr8_A Sulfate adenylyltranfer 97.2 7.8E-05 2.7E-09 84.4 1.4 32 38-73 367-398 (552)
193 1ixz_A ATP-dependent metallopr 97.2 0.00014 4.6E-09 73.4 2.7 35 26-64 39-73 (254)
194 2pez_A Bifunctional 3'-phospho 97.2 0.00016 5.3E-09 68.9 3.0 28 37-64 2-29 (179)
195 2p67_A LAO/AO transport system 97.2 2.4E-05 8.2E-10 83.3 -3.1 50 10-64 31-80 (341)
196 2dy1_A Elongation factor G; tr 97.1 0.0003 1E-08 81.4 5.6 27 38-64 7-33 (665)
197 2qt1_A Nicotinamide riboside k 97.1 0.00021 7.1E-09 69.7 3.5 27 38-64 19-45 (207)
198 1zu4_A FTSY; GTPase, signal re 97.1 0.00017 5.7E-09 76.2 2.8 40 29-74 96-135 (320)
199 1jjv_A Dephospho-COA kinase; P 97.1 0.00022 7.5E-09 69.4 3.4 22 42-63 4-25 (206)
200 1iy2_A ATP-dependent metallopr 97.1 0.00017 6E-09 73.8 2.7 35 26-64 63-97 (278)
201 4dcu_A GTP-binding protein ENG 97.1 0.00046 1.6E-08 76.2 6.0 119 42-176 25-144 (456)
202 2z4s_A Chromosomal replication 97.1 0.00044 1.5E-08 76.1 5.7 103 40-173 130-237 (440)
203 1cke_A CK, MSSA, protein (cyti 97.1 0.00022 7.5E-09 70.2 2.9 24 41-64 6-29 (227)
204 3kl4_A SRP54, signal recogniti 97.0 0.00021 7.3E-09 78.4 3.0 26 39-64 96-121 (433)
205 2www_A Methylmalonic aciduria 97.0 0.0002 6.9E-09 76.4 2.5 33 38-74 72-104 (349)
206 2ius_A DNA translocase FTSK; n 97.0 0.00013 4.3E-09 81.9 0.1 25 38-62 165-189 (512)
207 3iev_A GTP-binding protein ERA 97.0 0.0011 3.8E-08 69.3 7.4 62 41-105 11-73 (308)
208 2xau_A PRE-mRNA-splicing facto 96.9 8.3E-05 2.8E-09 87.6 -1.6 125 38-177 107-256 (773)
209 2if2_A Dephospho-COA kinase; a 96.9 0.00034 1.2E-08 67.8 2.9 21 42-62 3-23 (204)
210 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00047 1.6E-08 64.4 3.6 24 41-64 24-47 (149)
211 3b9p_A CG5977-PA, isoform A; A 96.9 0.0016 5.5E-08 66.8 7.9 26 39-64 53-78 (297)
212 1ypw_A Transitional endoplasmi 96.8 0.002 6.8E-08 76.2 8.7 111 38-176 236-353 (806)
213 2zej_A Dardarin, leucine-rich 96.8 0.00064 2.2E-08 64.6 3.8 23 42-64 4-26 (184)
214 1odf_A YGR205W, hypothetical 3 96.8 0.0005 1.7E-08 71.5 3.2 27 38-64 29-55 (290)
215 1mky_A Probable GTP-binding pr 96.8 0.00046 1.6E-08 75.8 2.8 23 42-64 182-204 (439)
216 2qor_A Guanylate kinase; phosp 96.8 0.00059 2E-08 66.5 3.1 27 38-64 10-36 (204)
217 2wji_A Ferrous iron transport 96.7 0.00071 2.4E-08 63.1 3.3 24 42-65 5-28 (165)
218 2cjw_A GTP-binding protein GEM 96.7 0.0011 3.8E-08 63.8 4.3 23 42-64 8-30 (192)
219 4fcw_A Chaperone protein CLPB; 96.7 0.002 6.9E-08 66.3 6.5 25 40-64 47-71 (311)
220 4eaq_A DTMP kinase, thymidylat 96.6 0.0013 4.4E-08 65.8 4.1 27 38-64 24-50 (229)
221 3t61_A Gluconokinase; PSI-biol 96.5 0.00093 3.2E-08 64.7 2.7 24 41-64 19-42 (202)
222 1v5w_A DMC1, meiotic recombina 96.5 0.0028 9.6E-08 67.3 6.7 28 34-63 118-145 (343)
223 4ad8_A DNA repair protein RECN 96.5 0.0006 2.1E-08 76.5 1.5 33 29-64 52-84 (517)
224 2z43_A DNA repair and recombin 96.5 0.0016 5.3E-08 68.6 4.5 28 34-63 103-130 (324)
225 2wjg_A FEOB, ferrous iron tran 96.5 0.0012 4.2E-08 62.3 3.2 23 42-64 9-31 (188)
226 3ice_A Transcription terminati 96.5 0.0007 2.4E-08 73.1 1.7 51 10-64 134-198 (422)
227 1m7g_A Adenylylsulfate kinase; 96.5 0.0006 2E-08 66.8 1.0 32 38-73 23-54 (211)
228 1m2o_B GTP-binding protein SAR 96.5 0.0018 6.3E-08 61.9 4.3 45 26-73 12-56 (190)
229 2yvu_A Probable adenylyl-sulfa 96.5 0.0015 5.2E-08 62.3 3.7 27 38-64 11-37 (186)
230 3qks_A DNA double-strand break 96.4 0.0015 5.1E-08 64.1 3.6 24 41-64 24-47 (203)
231 1wf3_A GTP-binding protein; GT 96.4 0.0017 5.9E-08 67.7 4.3 24 42-65 9-32 (301)
232 1f6b_A SAR1; gtpases, N-termin 96.4 0.00099 3.4E-08 64.3 2.2 47 24-73 12-58 (198)
233 2qtf_A Protein HFLX, GTP-bindi 96.4 0.00096 3.3E-08 71.6 2.3 24 42-65 181-204 (364)
234 4a1f_A DNAB helicase, replicat 96.4 0.00069 2.4E-08 72.1 1.0 117 33-171 41-164 (338)
235 3cm0_A Adenylate kinase; ATP-b 96.4 0.0016 5.5E-08 61.9 3.3 25 39-63 3-27 (186)
236 3k53_A Ferrous iron transport 96.4 0.00091 3.1E-08 68.3 1.6 24 42-65 5-28 (271)
237 2xtp_A GTPase IMAP family memb 96.4 0.0043 1.5E-07 62.4 6.6 23 42-64 24-46 (260)
238 2qag_A Septin-2, protein NEDD5 96.4 0.0005 1.7E-08 73.7 -0.5 45 9-64 17-61 (361)
239 3k1j_A LON protease, ATP-depen 96.3 0.00096 3.3E-08 76.3 1.8 42 25-72 47-88 (604)
240 1y63_A LMAJ004144AAA protein; 96.3 0.0022 7.4E-08 61.4 3.7 31 31-63 3-33 (184)
241 1np6_A Molybdopterin-guanine d 96.3 0.0019 6.3E-08 62.2 3.2 24 41-64 7-30 (174)
242 1q3t_A Cytidylate kinase; nucl 96.3 0.002 6.7E-08 64.3 3.4 27 38-64 14-40 (236)
243 3kb2_A SPBC2 prophage-derived 96.3 0.0019 6.6E-08 60.1 3.2 23 42-64 3-25 (173)
244 3pqc_A Probable GTP-binding pr 96.3 0.0029 9.8E-08 59.7 4.3 32 42-73 25-56 (195)
245 1u94_A RECA protein, recombina 96.1 0.0051 1.7E-07 65.8 5.8 29 34-64 59-87 (356)
246 3lw7_A Adenylate kinase relate 96.1 0.0027 9.3E-08 58.8 3.2 19 42-60 3-21 (179)
247 2nzj_A GTP-binding protein REM 96.1 0.0035 1.2E-07 58.1 3.8 32 42-73 6-37 (175)
248 3m6a_A ATP-dependent protease 96.0 0.0023 7.9E-08 72.2 2.9 39 29-74 100-138 (543)
249 2dyk_A GTP-binding protein; GT 96.0 0.0024 8.3E-08 58.3 2.5 23 42-64 3-25 (161)
250 3auy_A DNA double-strand break 96.0 0.0056 1.9E-07 65.6 5.6 22 41-62 26-47 (371)
251 1upt_A ARL1, ADP-ribosylation 96.0 0.0044 1.5E-07 57.1 4.1 32 42-73 9-40 (171)
252 1qhx_A CPT, protein (chloramph 96.0 0.0034 1.2E-07 59.1 3.4 25 40-64 3-27 (178)
253 2oil_A CATX-8, RAS-related pro 96.0 0.0047 1.6E-07 58.6 4.4 24 42-65 27-50 (193)
254 1kht_A Adenylate kinase; phosp 96.0 0.0035 1.2E-07 59.4 3.4 25 40-64 3-27 (192)
255 1r8s_A ADP-ribosylation factor 96.0 0.0045 1.5E-07 56.8 3.9 32 42-73 2-33 (164)
256 3b1v_A Ferrous iron uptake tra 96.0 0.0055 1.9E-07 62.9 5.0 23 42-64 5-27 (272)
257 3q72_A GTP-binding protein RAD 96.0 0.0028 9.6E-08 58.3 2.5 24 42-65 4-27 (166)
258 1vht_A Dephospho-COA kinase; s 95.9 0.0039 1.3E-07 61.0 3.4 23 41-63 5-27 (218)
259 1fzq_A ADP-ribosylation factor 95.9 0.002 6.9E-08 61.0 1.2 32 42-73 18-49 (181)
260 3h4m_A Proteasome-activating n 95.9 0.0091 3.1E-07 60.7 6.2 26 39-64 50-75 (285)
261 2jaq_A Deoxyguanosine kinase; 95.9 0.0039 1.3E-07 59.7 3.2 23 42-64 2-24 (205)
262 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0021 7E-08 68.7 1.3 38 25-64 9-48 (359)
263 1j8m_F SRP54, signal recogniti 95.9 0.0028 9.6E-08 66.1 2.3 31 31-64 92-122 (297)
264 2p5t_B PEZT; postsegregational 95.8 0.0031 1.1E-07 63.7 2.5 27 38-64 30-56 (253)
265 2ze6_A Isopentenyl transferase 95.8 0.0038 1.3E-07 63.2 3.2 23 42-64 3-25 (253)
266 2hjg_A GTP-binding protein ENG 95.8 0.011 3.6E-07 64.8 6.7 32 42-73 5-36 (436)
267 1ex7_A Guanylate kinase; subst 95.8 0.0043 1.5E-07 60.3 3.0 23 42-64 3-25 (186)
268 2dhr_A FTSH; AAA+ protein, hex 95.8 0.0044 1.5E-07 69.3 3.5 34 27-64 55-88 (499)
269 2ohf_A Protein OLA1, GTP-bindi 95.8 0.0042 1.4E-07 67.4 3.2 25 40-64 22-46 (396)
270 1ly1_A Polynucleotide kinase; 95.8 0.0048 1.6E-07 57.8 3.3 21 42-62 4-24 (181)
271 2rhm_A Putative kinase; P-loop 95.7 0.005 1.7E-07 58.5 3.3 26 39-64 4-29 (193)
272 2ged_A SR-beta, signal recogni 95.7 0.0045 1.5E-07 58.7 2.9 24 42-65 50-73 (193)
273 1via_A Shikimate kinase; struc 95.7 0.0045 1.5E-07 58.4 2.9 23 42-64 6-28 (175)
274 4dhe_A Probable GTP-binding pr 95.7 0.0048 1.6E-07 60.0 3.1 23 42-64 31-53 (223)
275 1z2a_A RAS-related protein RAB 95.7 0.0049 1.7E-07 56.5 2.9 24 42-65 7-30 (168)
276 3r20_A Cytidylate kinase; stru 95.7 0.005 1.7E-07 62.0 3.2 22 42-63 11-32 (233)
277 2erx_A GTP-binding protein DI- 95.6 0.0055 1.9E-07 56.3 3.1 24 42-65 5-28 (172)
278 3bh0_A DNAB-like replicative h 95.6 0.0062 2.1E-07 63.8 3.8 32 30-63 60-91 (315)
279 1kao_A RAP2A; GTP-binding prot 95.6 0.0053 1.8E-07 56.0 2.9 24 42-65 5-28 (167)
280 2fg5_A RAB-22B, RAS-related pr 95.6 0.0071 2.4E-07 57.6 3.9 24 42-65 25-48 (192)
281 2ce2_X GTPase HRAS; signaling 95.6 0.0049 1.7E-07 56.0 2.6 24 42-65 5-28 (166)
282 1gtv_A TMK, thymidylate kinase 95.6 0.0024 8.2E-08 62.0 0.5 23 42-64 2-24 (214)
283 2ffh_A Protein (FFH); SRP54, s 95.6 0.005 1.7E-07 67.4 3.1 32 39-74 97-128 (425)
284 3iby_A Ferrous iron transport 95.6 0.0034 1.2E-07 63.8 1.7 23 42-64 3-25 (256)
285 3iij_A Coilin-interacting nucl 95.6 0.0056 1.9E-07 58.0 3.0 26 39-64 10-35 (180)
286 2v54_A DTMP kinase, thymidylat 95.6 0.0064 2.2E-07 58.4 3.5 26 39-64 3-28 (204)
287 1u8z_A RAS-related protein RAL 95.6 0.0055 1.9E-07 55.9 2.9 24 42-65 6-29 (168)
288 1h65_A Chloroplast outer envel 95.6 0.0071 2.4E-07 61.6 3.9 24 42-65 41-64 (270)
289 1xjc_A MOBB protein homolog; s 95.6 0.006 2.1E-07 58.4 3.2 24 41-64 5-28 (169)
290 1lv7_A FTSH; alpha/beta domain 95.5 0.0063 2.2E-07 61.1 3.4 23 42-64 47-69 (257)
291 2plr_A DTMP kinase, probable t 95.5 0.0067 2.3E-07 58.4 3.5 25 40-64 4-28 (213)
292 1uf9_A TT1252 protein; P-loop, 95.5 0.0067 2.3E-07 58.2 3.4 24 40-63 8-31 (203)
293 1z0j_A RAB-22, RAS-related pro 95.5 0.0059 2E-07 56.1 2.9 24 42-65 8-31 (170)
294 3def_A T7I23.11 protein; chlor 95.5 0.0074 2.5E-07 61.2 3.9 24 42-65 38-61 (262)
295 1moz_A ARL1, ADP-ribosylation 95.5 0.0034 1.2E-07 58.8 1.3 32 42-73 20-51 (183)
296 2iwr_A Centaurin gamma 1; ANK 95.5 0.0067 2.3E-07 56.6 3.3 32 42-73 9-40 (178)
297 1ek0_A Protein (GTP-binding pr 95.5 0.006 2E-07 55.9 2.9 24 42-65 5-28 (170)
298 1sxj_C Activator 1 40 kDa subu 95.5 0.003 1E-07 66.4 0.9 37 26-64 32-70 (340)
299 3tw8_B RAS-related protein RAB 95.5 0.0059 2E-07 56.7 2.8 24 42-65 11-34 (181)
300 1g16_A RAS-related protein SEC 95.5 0.0058 2E-07 56.1 2.6 24 42-65 5-28 (170)
301 3q85_A GTP-binding protein REM 95.5 0.0066 2.2E-07 55.9 3.0 23 42-64 4-26 (169)
302 2qu8_A Putative nucleolar GTP- 95.5 0.0042 1.4E-07 61.2 1.8 24 42-65 31-54 (228)
303 1z08_A RAS-related protein RAB 95.5 0.0065 2.2E-07 55.9 3.0 24 42-65 8-31 (170)
304 3trf_A Shikimate kinase, SK; a 95.5 0.0072 2.5E-07 57.3 3.3 25 40-64 5-29 (185)
305 1nks_A Adenylate kinase; therm 95.5 0.0067 2.3E-07 57.4 3.1 23 42-64 3-25 (194)
306 1gvn_B Zeta; postsegregational 95.5 0.0074 2.5E-07 62.4 3.6 27 38-64 31-57 (287)
307 1ky3_A GTP-binding protein YPT 95.4 0.0065 2.2E-07 56.5 2.9 24 42-65 10-33 (182)
308 2c95_A Adenylate kinase 1; tra 95.4 0.0074 2.5E-07 57.5 3.4 26 39-64 8-33 (196)
309 3ake_A Cytidylate kinase; CMP 95.4 0.0067 2.3E-07 58.4 3.1 23 42-64 4-26 (208)
310 1c1y_A RAS-related protein RAP 95.4 0.0065 2.2E-07 55.6 2.9 24 42-65 5-28 (167)
311 3i8s_A Ferrous iron transport 95.4 0.0047 1.6E-07 63.3 2.0 24 42-65 5-28 (274)
312 1svi_A GTP-binding protein YSX 95.4 0.0059 2E-07 57.8 2.6 23 42-64 25-47 (195)
313 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0068 2.3E-07 56.3 2.9 24 42-65 9-32 (177)
314 1tev_A UMP-CMP kinase; ploop, 95.4 0.0079 2.7E-07 57.0 3.4 25 40-64 3-27 (196)
315 2fn4_A P23, RAS-related protei 95.4 0.0066 2.2E-07 56.4 2.7 24 42-65 11-34 (181)
316 1ksh_A ARF-like protein 2; sma 95.4 0.011 3.6E-07 55.7 4.2 32 42-73 20-51 (186)
317 2wwf_A Thymidilate kinase, put 95.4 0.0078 2.7E-07 58.2 3.3 26 39-64 9-34 (212)
318 1r2q_A RAS-related protein RAB 95.3 0.0075 2.6E-07 55.3 2.9 24 42-65 8-31 (170)
319 2lkc_A Translation initiation 95.3 0.0099 3.4E-07 55.2 3.7 26 40-65 8-33 (178)
320 4dsu_A GTPase KRAS, isoform 2B 95.3 0.0077 2.6E-07 56.4 2.9 24 42-65 6-29 (189)
321 3clv_A RAB5 protein, putative; 95.3 0.0077 2.6E-07 56.8 2.9 24 42-65 9-32 (208)
322 2z0h_A DTMP kinase, thymidylat 95.3 0.0085 2.9E-07 57.1 3.2 23 42-64 2-24 (197)
323 2cxx_A Probable GTP-binding pr 95.3 0.0071 2.4E-07 56.8 2.6 24 42-65 3-26 (190)
324 4bas_A ADP-ribosylation factor 95.3 0.0098 3.4E-07 56.4 3.6 27 41-67 18-44 (199)
325 2g6b_A RAS-related protein RAB 95.3 0.012 4.2E-07 54.7 4.2 24 42-65 12-35 (180)
326 2h57_A ADP-ribosylation factor 95.3 0.011 3.7E-07 56.0 3.8 23 42-64 23-45 (190)
327 1nn5_A Similar to deoxythymidy 95.3 0.009 3.1E-07 57.8 3.3 26 39-64 8-33 (215)
328 1jwy_B Dynamin A GTPase domain 95.2 0.0084 2.9E-07 62.0 3.2 25 41-65 25-49 (315)
329 3bc1_A RAS-related protein RAB 95.2 0.0083 2.8E-07 56.3 2.9 24 42-65 13-36 (195)
330 2hxs_A RAB-26, RAS-related pro 95.2 0.0092 3.1E-07 55.4 3.1 24 42-65 8-31 (178)
331 2y8e_A RAB-protein 6, GH09086P 95.2 0.0082 2.8E-07 55.6 2.6 24 42-65 16-39 (179)
332 3t5d_A Septin-7; GTP-binding p 95.2 0.0075 2.6E-07 61.6 2.5 23 42-64 10-32 (274)
333 1z0f_A RAB14, member RAS oncog 95.1 0.0095 3.2E-07 55.2 2.9 24 42-65 17-40 (179)
334 3t5g_A GTP-binding protein RHE 95.1 0.014 4.8E-07 54.5 4.1 23 42-64 8-30 (181)
335 1xp8_A RECA protein, recombina 95.1 0.029 1E-06 60.1 7.0 28 34-63 70-97 (366)
336 3con_A GTPase NRAS; structural 95.1 0.0097 3.3E-07 56.2 2.9 24 42-65 23-46 (190)
337 2a9k_A RAS-related protein RAL 95.1 0.0098 3.3E-07 55.5 2.9 24 42-65 20-43 (187)
338 3dm5_A SRP54, signal recogniti 95.1 0.023 8E-07 62.4 6.2 26 39-64 99-124 (443)
339 2vli_A Antibiotic resistance p 95.1 0.0089 3E-07 56.3 2.6 26 39-64 4-29 (183)
340 2bwj_A Adenylate kinase 5; pho 95.1 0.011 3.7E-07 56.5 3.2 25 40-64 12-36 (199)
341 1zd9_A ADP-ribosylation factor 95.0 0.015 5.3E-07 55.0 4.2 24 42-65 24-47 (188)
342 2pbr_A DTMP kinase, thymidylat 95.0 0.012 3.9E-07 55.9 3.3 23 42-64 2-24 (195)
343 2efe_B Small GTP-binding prote 95.0 0.011 3.6E-07 55.1 3.0 24 42-65 14-37 (181)
344 1jal_A YCHF protein; nucleotid 95.0 0.013 4.6E-07 62.7 4.1 23 42-64 4-26 (363)
345 2h17_A ADP-ribosylation factor 95.0 0.0081 2.8E-07 56.5 2.1 32 42-73 23-54 (181)
346 2bov_A RAla, RAS-related prote 95.0 0.01 3.6E-07 56.5 2.9 24 42-65 16-39 (206)
347 3fb4_A Adenylate kinase; psych 95.0 0.012 4E-07 57.4 3.2 23 42-64 2-24 (216)
348 2bme_A RAB4A, RAS-related prot 95.0 0.01 3.4E-07 55.7 2.6 24 42-65 12-35 (186)
349 1vg8_A RAS-related protein RAB 94.9 0.011 3.8E-07 56.5 2.9 24 42-65 10-33 (207)
350 3t1o_A Gliding protein MGLA; G 94.9 0.011 3.8E-07 55.6 2.9 23 42-64 16-38 (198)
351 1e6c_A Shikimate kinase; phosp 94.9 0.011 3.9E-07 55.1 2.8 23 42-64 4-26 (173)
352 2gf0_A GTP-binding protein DI- 94.9 0.011 3.7E-07 56.1 2.7 24 42-65 10-33 (199)
353 3ihw_A Centg3; RAS, centaurin, 94.9 0.012 4.1E-07 55.9 3.0 24 42-65 22-45 (184)
354 3cf0_A Transitional endoplasmi 94.9 0.012 4.1E-07 61.0 3.2 27 38-64 47-73 (301)
355 2gf9_A RAS-related protein RAB 94.9 0.012 4E-07 55.8 2.9 24 42-65 24-47 (189)
356 3cbq_A GTP-binding protein REM 94.9 0.01 3.4E-07 57.1 2.4 23 42-64 25-47 (195)
357 2cdn_A Adenylate kinase; phosp 94.9 0.015 5.3E-07 55.9 3.7 27 38-64 18-44 (201)
358 1zj6_A ADP-ribosylation factor 94.9 0.011 3.7E-07 55.9 2.5 24 42-65 18-41 (187)
359 3kkq_A RAS-related protein M-R 94.9 0.012 4.1E-07 55.0 2.9 24 42-65 20-43 (183)
360 1nrj_B SR-beta, signal recogni 94.8 0.012 4.1E-07 57.0 2.9 24 42-65 14-37 (218)
361 1qf9_A UMP/CMP kinase, protein 94.8 0.013 4.4E-07 55.4 3.0 24 41-64 7-30 (194)
362 1m7b_A RND3/RHOE small GTP-bin 94.8 0.012 4E-07 55.6 2.6 24 42-65 9-32 (184)
363 1ukz_A Uridylate kinase; trans 94.8 0.015 5.2E-07 55.9 3.5 26 39-64 14-39 (203)
364 3tkl_A RAS-related protein RAB 94.8 0.013 4.3E-07 55.4 2.9 24 42-65 18-41 (196)
365 2pt5_A Shikimate kinase, SK; a 94.8 0.015 5.2E-07 54.0 3.3 23 42-64 2-24 (168)
366 1mh1_A RAC1; GTP-binding, GTPa 94.8 0.013 4.4E-07 54.7 2.9 24 42-65 7-30 (186)
367 1zuh_A Shikimate kinase; alpha 94.8 0.015 5.1E-07 54.3 3.3 26 39-64 6-31 (168)
368 3dl0_A Adenylate kinase; phosp 94.8 0.014 4.8E-07 56.8 3.2 23 42-64 2-24 (216)
369 1aky_A Adenylate kinase; ATP:A 94.8 0.016 5.3E-07 56.8 3.5 26 39-64 3-28 (220)
370 2wsm_A Hydrogenase expression/ 94.8 0.013 4.6E-07 56.9 3.0 24 41-64 31-54 (221)
371 1zd8_A GTP:AMP phosphotransfer 94.8 0.014 4.8E-07 57.5 3.2 26 39-64 6-31 (227)
372 1zbd_A Rabphilin-3A; G protein 94.7 0.014 4.8E-07 55.7 3.0 24 42-65 10-33 (203)
373 1uj2_A Uridine-cytidine kinase 94.7 0.015 5E-07 58.6 3.2 24 41-64 23-46 (252)
374 1z06_A RAS-related protein RAB 94.7 0.014 4.9E-07 55.1 2.9 24 42-65 22-45 (189)
375 2il1_A RAB12; G-protein, GDP, 94.7 0.013 4.5E-07 55.8 2.7 24 42-65 28-51 (192)
376 3dz8_A RAS-related protein RAB 94.7 0.013 4.6E-07 55.5 2.6 24 42-65 25-48 (191)
377 3oes_A GTPase rhebl1; small GT 94.7 0.013 4.6E-07 56.1 2.6 24 42-65 26-49 (201)
378 2iyv_A Shikimate kinase, SK; t 94.6 0.014 4.8E-07 55.2 2.8 23 42-64 4-26 (184)
379 2a5j_A RAS-related protein RAB 94.6 0.015 5.1E-07 55.2 2.9 24 42-65 23-46 (191)
380 3a1s_A Iron(II) transport prot 94.6 0.015 5.1E-07 59.0 3.1 24 42-65 7-30 (258)
381 2dby_A GTP-binding protein; GD 94.6 0.014 4.6E-07 62.8 2.9 23 42-64 3-25 (368)
382 2aka_B Dynamin-1; fusion prote 94.6 0.013 4.5E-07 59.9 2.6 24 42-65 28-51 (299)
383 2bcg_Y Protein YP2, GTP-bindin 94.6 0.014 4.7E-07 56.1 2.6 24 42-65 10-33 (206)
384 2x77_A ADP-ribosylation factor 94.6 0.01 3.5E-07 56.0 1.7 32 42-73 24-55 (189)
385 2o52_A RAS-related protein RAB 94.6 0.015 5E-07 55.9 2.8 24 42-65 27-50 (200)
386 2fh5_B SR-beta, signal recogni 94.6 0.022 7.7E-07 54.9 4.1 24 42-65 9-32 (214)
387 1zak_A Adenylate kinase; ATP:A 94.6 0.015 5E-07 57.1 2.8 25 40-64 5-29 (222)
388 3bwd_D RAC-like GTP-binding pr 94.6 0.016 5.4E-07 54.0 2.9 24 42-65 10-33 (182)
389 3cph_A RAS-related protein SEC 94.6 0.015 5.3E-07 55.7 2.9 24 42-65 22-45 (213)
390 2grj_A Dephospho-COA kinase; T 94.6 0.017 5.9E-07 56.1 3.2 24 40-63 12-35 (192)
391 3bos_A Putative DNA replicatio 94.6 0.019 6.5E-07 56.0 3.5 26 39-64 51-76 (242)
392 1x3s_A RAS-related protein RAB 94.5 0.016 5.5E-07 54.6 2.9 24 42-65 17-40 (195)
393 2atv_A RERG, RAS-like estrogen 94.5 0.016 5.5E-07 55.2 2.9 24 42-65 30-53 (196)
394 2p5s_A RAS and EF-hand domain 94.5 0.016 5.5E-07 55.4 2.9 24 42-65 30-53 (199)
395 3reg_A RHO-like small GTPase; 94.5 0.016 5.6E-07 54.9 2.9 24 42-65 25-48 (194)
396 2ew1_A RAS-related protein RAB 94.5 0.016 5.4E-07 56.2 2.6 24 42-65 28-51 (201)
397 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.021 7.1E-07 57.9 3.5 25 40-64 4-28 (260)
398 2f7s_A C25KG, RAS-related prot 94.4 0.019 6.7E-07 55.4 3.1 24 42-65 27-50 (217)
399 2fv8_A H6, RHO-related GTP-bin 94.3 0.018 6E-07 55.6 2.7 24 42-65 27-50 (207)
400 2xb4_A Adenylate kinase; ATP-b 94.3 0.021 7.3E-07 56.3 3.3 23 42-64 2-24 (223)
401 1a7j_A Phosphoribulokinase; tr 94.3 0.014 4.6E-07 60.6 2.0 25 40-64 5-29 (290)
402 3c5c_A RAS-like protein 12; GD 94.3 0.019 6.6E-07 54.4 2.9 24 42-65 23-46 (187)
403 2q3h_A RAS homolog gene family 94.3 0.02 6.9E-07 54.5 3.0 24 42-65 22-45 (201)
404 2fu5_C RAS-related protein RAB 94.3 0.013 4.5E-07 54.8 1.7 24 42-65 10-33 (183)
405 3llm_A ATP-dependent RNA helic 94.3 0.02 6.9E-07 56.8 3.0 25 38-62 74-98 (235)
406 2f6r_A COA synthase, bifunctio 94.3 0.02 6.9E-07 58.8 3.1 23 40-62 75-97 (281)
407 2j1l_A RHO-related GTP-binding 94.2 0.02 6.8E-07 55.7 2.9 24 42-65 36-59 (214)
408 1gwn_A RHO-related GTP-binding 94.2 0.019 6.6E-07 55.6 2.6 24 42-65 30-53 (205)
409 3llu_A RAS-related GTP-binding 94.2 0.021 7.1E-07 54.5 2.8 23 42-64 22-44 (196)
410 4ag6_A VIRB4 ATPase, type IV s 94.1 0.019 6.4E-07 61.7 2.6 26 39-64 34-59 (392)
411 2b6h_A ADP-ribosylation factor 94.1 0.02 6.7E-07 54.7 2.5 25 41-65 30-54 (192)
412 4djt_A GTP-binding nuclear pro 94.1 0.013 4.3E-07 56.9 1.1 23 42-64 13-35 (218)
413 4a9a_A Ribosome-interacting GT 94.1 0.013 4.5E-07 63.0 1.3 23 42-64 74-96 (376)
414 2gco_A H9, RHO-related GTP-bin 94.1 0.021 7.2E-07 54.8 2.6 24 42-65 27-50 (201)
415 2w58_A DNAI, primosome compone 94.1 0.026 8.7E-07 54.3 3.2 24 41-64 55-78 (202)
416 3tlx_A Adenylate kinase 2; str 94.1 0.028 9.6E-07 56.3 3.6 25 39-63 28-52 (243)
417 1l8q_A Chromosomal replication 94.0 0.023 7.8E-07 59.1 2.9 26 39-64 36-61 (324)
418 3cnl_A YLQF, putative uncharac 94.0 0.026 8.9E-07 57.6 3.3 23 42-64 101-123 (262)
419 2atx_A Small GTP binding prote 94.0 0.023 7.9E-07 53.8 2.7 24 42-65 20-43 (194)
420 1njg_A DNA polymerase III subu 94.0 0.03 1E-06 53.9 3.6 24 41-64 46-69 (250)
421 4b4t_M 26S protease regulatory 93.9 0.14 4.7E-06 56.1 9.0 24 41-64 216-239 (434)
422 1e4v_A Adenylate kinase; trans 93.9 0.026 8.9E-07 55.0 3.0 23 42-64 2-24 (214)
423 1jbk_A CLPB protein; beta barr 93.9 0.034 1.2E-06 51.7 3.6 25 40-64 43-67 (195)
424 2g3y_A GTP-binding protein GEM 93.9 0.028 9.4E-07 55.3 3.1 23 42-64 39-61 (211)
425 2hf9_A Probable hydrogenase ni 93.9 0.026 8.9E-07 55.0 2.9 25 41-65 39-63 (226)
426 2yc2_C IFT27, small RAB-relate 93.8 0.013 4.4E-07 55.8 0.5 22 42-63 22-43 (208)
427 3gj0_A GTP-binding nuclear pro 93.8 0.014 4.8E-07 56.8 0.8 23 42-64 17-40 (221)
428 3be4_A Adenylate kinase; malar 93.8 0.03 1E-06 54.8 3.2 26 39-64 4-29 (217)
429 2hup_A RAS-related protein RAB 93.8 0.027 9.2E-07 54.1 2.7 24 42-65 31-54 (201)
430 3cpj_B GTP-binding protein YPT 93.7 0.03 1E-06 54.6 2.9 24 42-65 15-38 (223)
431 4b4t_L 26S protease subunit RP 93.7 0.15 5.2E-06 55.9 8.8 24 41-64 216-239 (437)
432 1ltq_A Polynucleotide kinase; 93.7 0.032 1.1E-06 57.2 3.3 21 42-62 4-24 (301)
433 4b4t_K 26S protease regulatory 93.6 0.12 4E-06 56.6 7.7 23 42-64 208-230 (428)
434 4b4t_J 26S protease regulatory 93.5 0.14 4.9E-06 55.4 8.2 23 42-64 184-206 (405)
435 1ak2_A Adenylate kinase isoenz 93.5 0.041 1.4E-06 54.5 3.6 26 39-64 15-40 (233)
436 1mky_A Probable GTP-binding pr 93.5 0.028 9.7E-07 61.4 2.7 23 42-64 3-25 (439)
437 3d3q_A TRNA delta(2)-isopenten 93.5 0.035 1.2E-06 58.9 3.2 23 42-64 9-31 (340)
438 2q6t_A DNAB replication FORK h 93.5 0.043 1.5E-06 60.1 4.0 30 33-64 195-224 (444)
439 4edh_A DTMP kinase, thymidylat 93.5 0.04 1.4E-06 54.4 3.4 27 38-64 4-30 (213)
440 2h92_A Cytidylate kinase; ross 93.4 0.033 1.1E-06 54.2 2.7 24 41-64 4-27 (219)
441 2x2e_A Dynamin-1; nitration, h 93.4 0.025 8.5E-07 60.0 2.0 24 42-65 33-56 (353)
442 4gzl_A RAS-related C3 botulinu 93.4 0.032 1.1E-06 53.7 2.6 23 42-64 32-54 (204)
443 3ld9_A DTMP kinase, thymidylat 93.4 0.043 1.5E-06 54.8 3.5 28 37-64 18-45 (223)
444 3q3j_B RHO-related GTP-binding 93.4 0.036 1.2E-06 53.9 2.9 24 42-65 29-52 (214)
445 2j0v_A RAC-like GTP-binding pr 93.3 0.034 1.2E-06 53.5 2.6 24 42-65 11-34 (212)
446 3gee_A MNME, tRNA modification 93.3 0.022 7.5E-07 63.3 1.3 23 42-64 235-257 (476)
447 3geh_A MNME, tRNA modification 93.2 0.02 6.7E-07 63.4 0.8 24 41-64 225-248 (462)
448 3umf_A Adenylate kinase; rossm 93.2 0.051 1.7E-06 54.0 3.7 27 38-64 27-53 (217)
449 3zvl_A Bifunctional polynucleo 93.2 0.045 1.5E-06 59.5 3.6 27 38-64 256-282 (416)
450 3v9p_A DTMP kinase, thymidylat 93.1 0.041 1.4E-06 55.0 2.9 26 39-64 24-49 (227)
451 3lv8_A DTMP kinase, thymidylat 93.1 0.047 1.6E-06 54.9 3.3 27 38-64 25-51 (236)
452 2qmh_A HPR kinase/phosphorylas 93.1 0.051 1.7E-06 53.4 3.4 27 38-64 32-58 (205)
453 2p65_A Hypothetical protein PF 93.0 0.045 1.5E-06 50.9 2.8 25 40-64 43-67 (187)
454 2ocp_A DGK, deoxyguanosine kin 92.9 0.05 1.7E-06 54.0 3.3 25 40-64 2-26 (241)
455 4tmk_A Protein (thymidylate ki 92.9 0.053 1.8E-06 53.6 3.3 26 39-64 2-27 (213)
456 1sky_E F1-ATPase, F1-ATP synth 92.9 0.049 1.7E-06 60.2 3.4 27 38-64 149-175 (473)
457 1p5z_B DCK, deoxycytidine kina 92.9 0.038 1.3E-06 55.8 2.3 27 38-64 22-48 (263)
458 1puj_A YLQF, conserved hypothe 92.8 0.049 1.7E-06 56.1 3.0 24 41-64 121-144 (282)
459 3crm_A TRNA delta(2)-isopenten 92.8 0.054 1.8E-06 57.1 3.3 23 42-64 7-29 (323)
460 3exa_A TRNA delta(2)-isopenten 92.8 0.059 2E-06 56.6 3.5 24 41-64 4-27 (322)
461 3sr0_A Adenylate kinase; phosp 92.7 0.056 1.9E-06 53.1 3.2 23 42-64 2-24 (206)
462 3l0i_B RAS-related protein RAB 92.7 0.016 5.6E-07 55.4 -0.7 23 42-64 35-57 (199)
463 1wxq_A GTP-binding protein; st 92.5 0.051 1.8E-06 58.8 2.9 23 42-64 2-24 (397)
464 3tmk_A Thymidylate kinase; pho 92.5 0.064 2.2E-06 53.2 3.3 26 39-64 4-29 (216)
465 2v3c_C SRP54, signal recogniti 92.5 0.047 1.6E-06 59.8 2.5 25 40-64 99-123 (432)
466 3p32_A Probable GTPase RV1496/ 92.5 0.058 2E-06 57.3 3.2 26 39-64 78-103 (355)
467 1qvr_A CLPB protein; coiled co 92.4 0.11 3.9E-06 61.5 6.0 24 41-64 589-612 (854)
468 3a8t_A Adenylate isopentenyltr 92.4 0.069 2.4E-06 56.6 3.5 26 39-64 39-64 (339)
469 3cmw_A Protein RECA, recombina 92.4 0.11 3.7E-06 65.7 5.8 29 34-64 728-756 (1706)
470 1sxj_D Activator 1 41 kDa subu 92.4 0.064 2.2E-06 55.8 3.3 22 43-64 61-82 (353)
471 3th5_A RAS-related C3 botulinu 91.6 0.024 8.2E-07 54.3 0.0 23 42-64 32-54 (204)
472 3r7w_A Gtpase1, GTP-binding pr 92.4 0.061 2.1E-06 55.9 3.1 22 42-63 5-26 (307)
473 2v1u_A Cell division control p 92.3 0.055 1.9E-06 56.7 2.7 27 38-64 42-68 (387)
474 1xzp_A Probable tRNA modificat 92.2 0.026 9E-07 62.7 0.1 23 42-64 245-267 (482)
475 2qz4_A Paraplegin; AAA+, SPG7, 92.2 0.078 2.7E-06 52.7 3.6 24 41-64 40-63 (262)
476 3foz_A TRNA delta(2)-isopenten 92.2 0.072 2.5E-06 55.8 3.3 24 41-64 11-34 (316)
477 2qpt_A EH domain-containing pr 92.1 0.06 2.1E-06 60.8 2.9 25 41-65 66-90 (550)
478 1ojl_A Transcriptional regulat 91.9 0.13 4.5E-06 53.3 5.0 25 40-64 25-49 (304)
479 4b4t_I 26S protease regulatory 91.8 0.28 9.7E-06 53.5 7.5 24 41-64 217-240 (437)
480 3ec1_A YQEH GTPase; atnos1, at 91.7 0.076 2.6E-06 56.8 2.9 24 40-63 162-185 (369)
481 4b4t_H 26S protease regulatory 91.7 0.23 7.8E-06 54.7 6.8 26 39-64 242-267 (467)
482 2chg_A Replication factor C sm 91.6 0.087 3E-06 50.1 3.0 23 42-64 40-62 (226)
483 4dcu_A GTP-binding protein ENG 91.6 0.13 4.4E-06 56.5 4.7 25 40-64 195-219 (456)
484 1ypw_A Transitional endoplasmi 91.5 0.045 1.5E-06 64.6 1.0 31 32-64 505-535 (806)
485 2orw_A Thymidine kinase; TMTK, 91.4 0.1 3.5E-06 50.1 3.2 25 39-63 2-27 (184)
486 3n70_A Transport activator; si 91.4 0.098 3.4E-06 47.8 3.0 25 40-64 24-48 (145)
487 1ko7_A HPR kinase/phosphatase; 91.4 0.092 3.1E-06 55.1 3.1 24 39-62 143-166 (314)
488 2j69_A Bacterial dynamin-like 91.4 0.13 4.5E-06 59.6 4.7 25 40-64 69-93 (695)
489 2i1q_A DNA repair and recombin 91.3 0.094 3.2E-06 54.6 3.0 28 33-62 93-120 (322)
490 3syl_A Protein CBBX; photosynt 91.3 0.11 3.6E-06 53.3 3.4 27 38-64 65-91 (309)
491 2r62_A Cell division protease 91.2 0.05 1.7E-06 54.7 0.8 22 43-64 47-68 (268)
492 4hlc_A DTMP kinase, thymidylat 91.1 0.12 4E-06 50.6 3.4 25 40-64 2-26 (205)
493 3h2y_A GTPase family protein; 91.1 0.082 2.8E-06 56.6 2.4 25 40-64 160-184 (368)
494 1yrb_A ATP(GTP)binding protein 91.1 0.12 4.2E-06 51.4 3.6 27 38-64 12-38 (262)
495 3eph_A TRNA isopentenyltransfe 91.1 0.098 3.3E-06 56.7 3.0 23 42-64 4-26 (409)
496 3cmu_A Protein RECA, recombina 91.0 0.31 1.1E-05 62.5 7.8 29 34-64 379-407 (2050)
497 2zts_A Putative uncharacterize 91.0 0.15 5.1E-06 50.0 4.0 25 34-60 26-50 (251)
498 2j37_W Signal recognition part 91.0 0.11 3.9E-06 57.9 3.5 26 39-64 100-125 (504)
499 3tqf_A HPR(Ser) kinase; transf 90.9 0.12 4.1E-06 49.7 3.1 24 39-62 15-38 (181)
500 3lvq_E ARF-GAP with SH3 domain 90.9 0.16 5.6E-06 56.0 4.7 32 42-73 324-355 (497)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=7.1e-31 Score=273.60 Aligned_cols=185 Identities=12% Similarity=0.147 Sum_probs=142.6
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|++. ..++.++++.+ .+|++++|+||||||||||+|+|+|+. +|++|++...+
T Consensus 6 ~~l~i~~ls~~y~~~--~~~L~~isl~i--~~Ge~~~iiGpnGsGKSTLl~~l~Gl~----~p~~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 6 YILKVEELNYNYSDG--THALKGINMNI--KRGEVTAILGGNGVGKSTLFQNFNGIL----KPSSGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEEECTTS--CEEEEEEEEEE--ETTSEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEECCCSHH
T ss_pred cEEEEEEEEEEECCC--CeEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeEEEECCEECCcccc
Confidence 479999999999643 35899999999 999999999999999999999999999 89999853211
Q ss_pred ---------ceEecccc-C------CCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHH
Q 005892 80 ---------GIWMARCA-G------IEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ---------gi~~~~~~-~------~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlA 123 (671)
+..++... . .++..+. ++..|+... ......+++|||||+||+|
T Consensus 78 ~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp HHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 11111100 0 0111111 112222211 1223456789999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++|||||||++||+.. +..+++++.++.++.|+|||+||||++.+..+|++++++.+ |+|+..|++.+
T Consensus 158 L~~~P~lLlLDEPts~LD~~~------~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~-G~i~~~g~~~~ 230 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMG------VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE-GRVILQGNPKE 230 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEET-TEEEEEECHHH
T ss_pred HHcCCCEEEEECccccCCHHH------HHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 99 9999999999999999 99999999999733399999999999999989999999988 99999999988
Q ss_pred ccCCccc
Q 005892 201 AHMETPL 207 (671)
Q Consensus 201 ~~~~~~l 207 (671)
++....+
T Consensus 231 ~~~~~~~ 237 (275)
T 3gfo_A 231 VFAEKEV 237 (275)
T ss_dssp HTHHHHH
T ss_pred HhcCHHH
Confidence 7754433
No 2
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=2e-30 Score=269.03 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=149.7
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
+++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||+|+|+|+. +|++|++...+
T Consensus 9 ~~~l~~~~l~~~~~~---~~vL~~vsl~i--~~Ge~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~~~~~~ 79 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ---QALINDVSLHI--ASGEMVAIIGPNGAGKSTLLRLLTGYL----SPSHGECHLLGQNLNSWQ 79 (266)
T ss_dssp CCEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECCTTSCHHHHHHHHTSSS----CCSSCEEEETTEETTTSC
T ss_pred cceEEEEeEEEEeCC---eeEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCEECCcCC
Confidence 357999999999965 47999999999 999999999999999999999999999 89999843111
Q ss_pred --------ceEeccccC------CCcch----------------hhhhccCCCcc--cccccchHHHHHHHHHHHHHHH-
Q 005892 80 --------GIWMARCAG------IEPCT----------------LIMDLEGTDGR--ERGEDDTAFEKQSALFALAVSD- 126 (671)
Q Consensus 80 --------gi~~~~~~~------~~~~~----------------~vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~e- 126 (671)
+...+.... .++.. .+++..|+... ......+++|+||++||+|++.
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 80 PKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp HHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 111110000 00110 11122233221 1223457889999999999985
Q ss_pred --------HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 127 --------IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 127 --------vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+||+||||++||+.. +..++++++++.++.|+|||+||||++++..+|++++++.+ |+|+..|++
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~------~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~-G~i~~~g~~ 232 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYH------QQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQ-GKLVACGTP 232 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHH------HHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEET-TEEEEEECH
T ss_pred cccCCCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEEC-CEEEEEcCH
Confidence 899999999999999 99999999999766578999999999999888999999988 999999999
Q ss_pred ccccCCccccchhcccc
Q 005892 199 PQAHMETPLSEFFNVEV 215 (671)
Q Consensus 199 ~e~~~~~~l~~~f~~~~ 215 (671)
.+++....+.+.|+..+
T Consensus 233 ~~~~~~~~l~~~~~~~~ 249 (266)
T 4g1u_C 233 EEVLNAETLTQWYQADL 249 (266)
T ss_dssp HHHCCHHHHHHHCCSCE
T ss_pred HHHhCcHHHHHHhCCCc
Confidence 98887666777776554
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=2.4e-30 Score=278.65 Aligned_cols=186 Identities=11% Similarity=0.130 Sum_probs=145.0
Q ss_pred CcceEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-----
Q 005892 6 ECCSTQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----- 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----- 79 (671)
+++||+++|+++.|+... ...++.+++|.+ .+|+++||+||||||||||||+|+|+. +|++|++...+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i--~~Gei~~IiGpnGaGKSTLlr~i~GL~----~p~~G~I~i~G~~i~~ 94 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHV--PAGQIYGVIGASGAGKSTLIRCVNLLE----RPTEGSVLVDGQELTT 94 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECSS
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEE--cCCCEEEEEcCCCchHHHHHHHHhcCC----CCCceEEEECCEECCc
Confidence 456899999999996421 246899999999 999999999999999999999999999 89999843111
Q ss_pred -------------ceEecccc------CCCcchhh------------------hhccCCCcc--cccccchHHHHHHHHH
Q 005892 80 -------------GIWMARCA------GIEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALF 120 (671)
Q Consensus 80 -------------gi~~~~~~------~~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~i 120 (671)
+..++... ..++..+. ++..|+... ......+++|||||+|
T Consensus 95 ~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 95 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp CCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 11111100 01111111 222233221 1223457889999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
|+||+ ++||+||||++||+.. +..++++|+++.++.|+|||+||||++++..+|+++++|.+ |+|+..|+
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~------~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~-G~iv~~g~ 247 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPAT------TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN-GELIEQDT 247 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEET-TEEEECCB
T ss_pred HHHHhcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999 9999999999999999 99999999999876799999999999999989999999988 99999999
Q ss_pred cccccCC
Q 005892 198 KPQAHME 204 (671)
Q Consensus 198 ~~e~~~~ 204 (671)
+.+++.+
T Consensus 248 ~~ev~~~ 254 (366)
T 3tui_C 248 VSEVFSH 254 (366)
T ss_dssp HHHHHSS
T ss_pred HHHHHhC
Confidence 9888754
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=3.1e-30 Score=277.39 Aligned_cols=181 Identities=14% Similarity=0.183 Sum_probs=141.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------- 80 (671)
++|+++|++++|++ ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 3 ~~l~i~~ls~~y~~---~~~L~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~----~p~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 3 AALHIGHLSKSFQN---TPVLNDISLSL--DPGEILFIIGASGCGKTTLLRCLAGFE----QPDSGEISLSGKTIFSKNT 73 (359)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEEESTTSSHHHHHHHHHTSS----CCSEEEEEETTEEEESSSC
T ss_pred cEEEEEeEEEEECC---EEEEEeeEEEE--cCCCEEEEECCCCchHHHHHHHHhcCC----CCCCcEEEECCEECccccc
Confidence 37999999999964 47899999999 999999999999999999999999999 899998532211
Q ss_pred ----------eEeccccCCCcchhhhh-------------------------ccCCCcc--cccccchHHHHHHHHHHHH
Q 005892 81 ----------IWMARCAGIEPCTLIMD-------------------------LEGTDGR--ERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 81 ----------i~~~~~~~~~~~~~vld-------------------------~~g~~~~--~r~~~~~~~qrQrv~iAlA 123 (671)
..++. ....+...+.+ ..|+... ......+++|||||+||+|
T Consensus 74 ~~~~~~r~ig~vfQ~-~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 74 NLPVRERRLGYLVQE-GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp BCCGGGSCCEEECTT-CCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ccchhhCCEEEEeCC-CcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 11111 00111111111 1222211 1123456779999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
|+ ++|||||||++||+.. +..+.+.+.++.++.|+|+|+||||++++..+||++++|.+ |+|+..|++.+
T Consensus 153 L~~~P~lLLLDEPts~LD~~~------r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~-G~i~~~g~~~e 225 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQL------RRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQ-GRILQTASPHE 225 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEET-TEEEEEECHHH
T ss_pred HHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEEC-CEEEEEeCHHH
Confidence 99 9999999999999998 99999888887666699999999999999989999999988 99999999998
Q ss_pred ccCCc
Q 005892 201 AHMET 205 (671)
Q Consensus 201 ~~~~~ 205 (671)
++..+
T Consensus 226 l~~~p 230 (359)
T 3fvq_A 226 LYRQP 230 (359)
T ss_dssp HHHSC
T ss_pred HHhCc
Confidence 87543
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=3.5e-30 Score=278.88 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=143.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 2 ~~l~~~~l~~~yg~---~~~L~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~----~p~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 2 ASVQLQNVTKAWGE---VVVSKDINLDI--HEGEFVVFVGPSGCGKSTLLRMIAGLE----TITSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTCCG
T ss_pred CEEEEEeEEEEECC---EEEEeeeEEEE--CCCCEEEEEcCCCchHHHHHHHHHcCC----CCCCeEEEECCEECCCCCH
Confidence 46999999999964 47899999999 999999999999999999999999999 89999843211
Q ss_pred ---c--eEeccc------cCCCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---
Q 005892 80 ---G--IWMARC------AGIEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS--- 125 (671)
Q Consensus 80 ---g--i~~~~~------~~~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~--- 125 (671)
+ ..++.. +..+++.+. ++..|+... ......+++|||||+||+||+
T Consensus 73 ~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp GGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 1 111111 001122221 122233221 122345678999999999999
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++|||||||++||+.. +..+++.|+++.++.|+|+|+||||++++..+||++++|.+ |+|+..|++.+++..
T Consensus 153 ~lLLLDEPts~LD~~~------~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~-G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA-GRVAQVGKPLELYHY 224 (381)
T ss_dssp SEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHC
T ss_pred CEEEEECCCcCCCHHH------HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEEeCHHHHHhC
Confidence 9999999999999998 99999999999776699999999999999989999999998 999999999988654
No 6
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=2.6e-29 Score=259.30 Aligned_cols=177 Identities=15% Similarity=0.079 Sum_probs=136.8
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
+++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 5 ~~~l~i~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~~ 75 (257)
T 1g6h_A 5 MEILRTENIVKYFGE---FKALDGVSISV--NKGDVTLIIGPNGSGKSTLINVITGFL----KADEGRVYFENKDITNKE 75 (257)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEECCEE--ETTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEECTTCC
T ss_pred CcEEEEeeeEEEECC---EeeEeeeEEEE--eCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCC
Confidence 457999999999954 36899999999 999999999999999999999999999 89999853211
Q ss_pred -------ce-EeccccCC-------Ccchhh-------------------------------hhccCCCc--ccccccch
Q 005892 80 -------GI-WMARCAGI-------EPCTLI-------------------------------MDLEGTDG--RERGEDDT 111 (671)
Q Consensus 80 -------gi-~~~~~~~~-------~~~~~v-------------------------------ld~~g~~~--~~r~~~~~ 111 (671)
.+ ++...... ++..+. ++..|+.. .......+
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 155 (257)
T 1g6h_A 76 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155 (257)
T ss_dssp HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence 01 00000000 111111 01112111 01122345
Q ss_pred HHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 112 ~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
++|+|||+||+|++ ++|||||||++||+.. +..+++++.++.++ |+|||+||||++.+...|++++++.+
T Consensus 156 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL------AHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 67999999999999 9999999999999999 99999999999765 99999999999999888999999988
Q ss_pred CCeEEEecCccc
Q 005892 189 IQKIWDSVPKPQ 200 (671)
Q Consensus 189 ~GkI~~~g~~~e 200 (671)
|+++..|++++
T Consensus 229 -G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 -GQIIAEGRGEE 239 (257)
T ss_dssp -TEEEEEEESHH
T ss_pred -CEEEEEeCHHH
Confidence 99999998776
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=2.8e-29 Score=255.80 Aligned_cols=179 Identities=20% Similarity=0.208 Sum_probs=136.8
Q ss_pred eEEEEeeeEEecccc-ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVSG-IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~-l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
||+++|+++.|+... ...++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i--~~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNI--KEGEFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEECCEEcccCCH
Confidence 489999999996421 236899999999 999999999999999999999999999 89999853211
Q ss_pred -----------ceEeccccC------CCcchh---------------------hhhccCCCcc---cccccchHHHHHHH
Q 005892 80 -----------GIWMARCAG------IEPCTL---------------------IMDLEGTDGR---ERGEDDTAFEKQSA 118 (671)
Q Consensus 80 -----------gi~~~~~~~------~~~~~~---------------------vld~~g~~~~---~r~~~~~~~qrQrv 118 (671)
+..++.... .++..+ .++..|+... ......+++|+||+
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence 111111100 011111 1222344321 22345678899999
Q ss_pred HHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEe
Q 005892 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
+||+|++ ++||+||||++||+.. +..+++++.++.++.|+|||+||||++.+ ..|++++++.+ |+|+..
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~-G~i~~~ 226 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKT------GEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKD-GEVERE 226 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEET-TEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEEC-CEEEEE
Confidence 9999999 9999999999999999 99999999999765599999999999855 57999998888 999999
Q ss_pred cCcccc
Q 005892 196 VPKPQA 201 (671)
Q Consensus 196 g~~~e~ 201 (671)
+++.++
T Consensus 227 ~~~~~~ 232 (235)
T 3tif_A 227 EKLRGF 232 (235)
T ss_dssp EECC--
T ss_pred cChhhh
Confidence 887654
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=2.6e-29 Score=260.20 Aligned_cols=180 Identities=18% Similarity=0.146 Sum_probs=139.3
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------ 80 (671)
+++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 22 ~~~l~i~~l~~~y~~---~~vL~~vsl~i--~~Gei~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~i~~~~ 92 (263)
T 2olj_A 22 LQMIDVHQLKKSFGS---LEVLKGINVHI--REGEVVVVIGPSGSGKSTFLRCLNLLE----DFDEGEIIIDGINLKAKD 92 (263)
T ss_dssp CCSEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEESSSTT
T ss_pred hheEEEEeEEEEECC---EEEEEeeEEEE--cCCCEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEECCEECCCcc
Confidence 347999999999954 36899999999 999999999999999999999999999 899998532110
Q ss_pred ---------e-EeccccCC-------Ccchhh-------------------hhccCCCcc--cccccchHHHHHHHHHHH
Q 005892 81 ---------I-WMARCAGI-------EPCTLI-------------------MDLEGTDGR--ERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 81 ---------i-~~~~~~~~-------~~~~~v-------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAl 122 (671)
+ ++...... ++..+. ++..|+... ......+++|+||++||+
T Consensus 93 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 93 TNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp CCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred ccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHH
Confidence 0 11110000 111110 111122111 112345677999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++|||||||++||+.. +..++++|.++.++ |+|||+||||++.+..+|++++++.+ |+|+..|+++
T Consensus 173 aL~~~p~lllLDEPts~LD~~~------~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~ 244 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEM------VGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDG-GYIIEEGKPE 244 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999 9999999999999999 99999999999776 99999999999998888999999988 9999999887
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
+++.
T Consensus 245 ~~~~ 248 (263)
T 2olj_A 245 DLFD 248 (263)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 9
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=5.9e-29 Score=256.17 Aligned_cols=190 Identities=13% Similarity=0.222 Sum_probs=144.7
Q ss_pred ceEEEEeeeEEec-cccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce-Eecc
Q 005892 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-WMAR 85 (671)
Q Consensus 8 ~~I~i~nlsk~y~-~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi-~~~~ 85 (671)
+||+++|+++.|+ . ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.+ ++..
T Consensus 3 ~~l~i~~l~~~y~~~---~~vl~~isl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~~~i~~v~q 73 (253)
T 2nq2_C 3 KALSVENLGFYYQAE---NFLFQQLNFDL--NKGDILAVLGQNGCGKSTLLDLLLGIH----RPIQGKIEVYQSIGFVPQ 73 (253)
T ss_dssp EEEEEEEEEEEETTT---TEEEEEEEEEE--ETTCEEEEECCSSSSHHHHHHHHTTSS----CCSEEEEEECSCEEEECS
T ss_pred ceEEEeeEEEEeCCC---CeEEEEEEEEE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEEeccEEEEcC
Confidence 3799999999996 3 36899999999 999999999999999999999999999 8999986321111 1111
Q ss_pred ccC-------CCcchh----------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhcc
Q 005892 86 CAG-------IEPCTL----------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLIN 131 (671)
Q Consensus 86 ~~~-------~~~~~~----------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLD 131 (671)
... .++..+ +++..|+... ......+++|+||++||+|++ ++||||
T Consensus 74 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 74 FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp CCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 111 011111 1112233211 122345678999999999999 999999
Q ss_pred ccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCCccccchh
Q 005892 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFF 211 (671)
Q Consensus 132 Ept~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~~l~~~f 211 (671)
|||++||+.. +..+++++.++.++.|+|||+||||++.+...|++++++.+ |+ +..|++++++....+.+.|
T Consensus 154 EPts~LD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~-G~-~~~g~~~~~~~~~~~~~~~ 225 (253)
T 2nq2_C 154 EPTSALDLAN------QDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK-QN-FKFGETRNILTSENLTALF 225 (253)
T ss_dssp SSSTTSCHHH------HHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEET-TE-EEEEEHHHHCCHHHHHHHH
T ss_pred CCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC-Ce-EecCCHHHHhCcHHHHHHh
Confidence 9999999999 99999999999765589999999999998888999999888 99 8889887776544455555
Q ss_pred ccc
Q 005892 212 NVE 214 (671)
Q Consensus 212 ~~~ 214 (671)
+..
T Consensus 226 ~~~ 228 (253)
T 2nq2_C 226 HLP 228 (253)
T ss_dssp TSC
T ss_pred CCC
Confidence 443
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=6.6e-29 Score=256.24 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=139.1
Q ss_pred CcceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 6 ECCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 6 ~~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
.|++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 12 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i--~~Gei~~l~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~~~~~ 82 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEILKGISFEI--EEGEIFGLIGPNGAGKTTTLRIISTLI----KPSSGIVTVFGKNVVEE 82 (256)
T ss_dssp --CCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEETTTC
T ss_pred cCCeEEEEEEEEEECC---EEEEEeeEEEE--cCCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCcc
Confidence 3678999999999954 36899999999 999999999999999999999999999 89999853211
Q ss_pred ------ce-EeccccC-------CCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCAG-------IEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ------gi-~~~~~~~-------~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~ 125 (671)
.+ ++..... .++..+ +++..|+... ......+++|+||++||+|++
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 83 PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp HHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 11 1111111 011111 1111233221 122345678999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|||||||++||+.. +..++++|.++.++ |+|||+||||++.+..+|++++++.+ |+++..|++.++.
T Consensus 163 ~~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLN------AREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHN-GTIVETGTVEELK 234 (256)
T ss_dssp TCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEET-TEEEEEEEHHHHH
T ss_pred cCCCEEEEeCCccccCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEEC-CEEEEecCHHHHH
Confidence 9999999999999999 99999999999764 99999999999998888999999888 9999999877664
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=5.2e-29 Score=269.82 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=141.6
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI------ 81 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi------ 81 (671)
.+|+++|++++|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.-
T Consensus 2 ~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 2 AGVRLVDVWKVFGE---VTAVREMSLEV--KDGEFMILLGPSGCGKTTTLRMIAGLE----EPSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHTSS----CCSEEEEEETTEEEEEGGG
T ss_pred CEEEEEeEEEEECC---EEEEeeeEEEE--cCCCEEEEECCCCcHHHHHHHHHHcCC----CCCccEEEECCEECccccc
Confidence 36999999999954 36899999999 999999999999999999999999999 8999985322110
Q ss_pred -------------Eecccc------CCCcchhhh------------------hccCCCcc--cccccchHHHHHHHHHHH
Q 005892 82 -------------WMARCA------GIEPCTLIM------------------DLEGTDGR--ERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 82 -------------~~~~~~------~~~~~~~vl------------------d~~g~~~~--~r~~~~~~~qrQrv~iAl 122 (671)
.++... ..++..+.+ +..|+... ......+++|+|||+||+
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 011000 011111111 11232211 122345678999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
||+ ++|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++++..+|+++++|.+ |+|+..|++.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKL------RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHhcCCCEEEECCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 999 9999999999999998 99999999999765699999999999999888999999988 9999999998
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
+++..
T Consensus 226 ~l~~~ 230 (372)
T 1g29_1 226 EVYDK 230 (372)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 88754
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=3.7e-29 Score=269.52 Aligned_cols=180 Identities=14% Similarity=0.107 Sum_probs=141.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|+++|++++|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEV--KDGEFVALLGPSGCGKTTTLLMLAGIY----KPTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEE--cCCCEEEEEcCCCchHHHHHHHHHCCC----CCCccEEEECCEECCCCChh
Confidence 6999999999954 36899999999 999999999999999999999999999 89999853211
Q ss_pred --ce--Eecccc------CCCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---H
Q 005892 80 --GI--WMARCA------GIEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 80 --gi--~~~~~~------~~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---e 126 (671)
.+ .++... ..++..+ +++..|+... ......+++|+|||+||+|++ +
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 11 111100 0111111 1112233221 122345678999999999999 9
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
+|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++++..+|+++++|.+ |+|+..|++.+++..
T Consensus 154 lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~-G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 154 VLLFDEPLSNLDANL------RMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQ-GKLVQYGTPDEVYDS 224 (359)
T ss_dssp EEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHS
T ss_pred EEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHhC
Confidence 999999999999998 99999999999765699999999999999888999999988 999999999888754
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=4.3e-29 Score=269.30 Aligned_cols=180 Identities=15% Similarity=0.115 Sum_probs=141.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|+++|++++|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKI--KDGEFMALLGPSGSGKSTLLYTIAGIY----KPTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEE--CCCCEEEEECCCCchHHHHHHHHhcCC----CCCceEEEECCEECCcCCHh
Confidence 6999999999954 36899999999 999999999999999999999999999 89999853211
Q ss_pred --ce--Eecccc------CCCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH---H
Q 005892 80 --GI--WMARCA------GIEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS---D 126 (671)
Q Consensus 80 --gi--~~~~~~------~~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---e 126 (671)
.+ .++... ..++..+. ++..|+... ......+++|+|||+||+|++ +
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 11 111100 01111111 122233221 122345788999999999999 9
Q ss_pred HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 127 vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
+|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++++..+|+++++|.+ |+|+..|++.+++..
T Consensus 154 lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 154 VLLLDEPLSNLDALL------RLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIRE-GEILQVGTPDEVYYK 224 (362)
T ss_dssp EEEEESGGGGSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHS
T ss_pred EEEEECccccCCHHH------HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 999999999999998 99999999999765699999999999999888999999988 999999999888754
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.95 E-value=8.9e-29 Score=256.07 Aligned_cols=179 Identities=19% Similarity=0.178 Sum_probs=140.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 5 ~~l~i~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG---HEVLKGVSLQA--RAGDVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEECCEEEC
T ss_pred ceEEEeeEEEEECC---EEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEcccccc
Confidence 36999999999954 36899999999 999999999999999999999999999 89999853211
Q ss_pred --------------------ceEeccccC------CCcchh-------------------hhhccCCCcc---cccccch
Q 005892 80 --------------------GIWMARCAG------IEPCTL-------------------IMDLEGTDGR---ERGEDDT 111 (671)
Q Consensus 80 --------------------gi~~~~~~~------~~~~~~-------------------vld~~g~~~~---~r~~~~~ 111 (671)
+..++.... .++..+ +++..|+... ......+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 155 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence 001111000 011111 1112233322 1223457
Q ss_pred HHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 112 ~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
++|+|||+||+|++ ++|||||||++||+.. +..+++++.++.++ |+|||+||||++.+..+|++++++.+
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~------~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPEL------VGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQ 228 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEET
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 88999999999999 9999999999999999 99999999999776 99999999999998888999999988
Q ss_pred CCeEEEecCcccccC
Q 005892 189 IQKIWDSVPKPQAHM 203 (671)
Q Consensus 189 ~GkI~~~g~~~e~~~ 203 (671)
|+|+..|++.+++.
T Consensus 229 -G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 229 -GKIEEEGDPEQVFG 242 (262)
T ss_dssp -TEEEEEECHHHHHH
T ss_pred -CEEEEeCCHHHHHh
Confidence 99999998877653
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.95 E-value=6.8e-29 Score=251.10 Aligned_cols=173 Identities=16% Similarity=0.173 Sum_probs=133.8
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
++||+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 2 ~~~l~~~~l~~~y~~---~~~l~~vsl~i--~~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 72 (224)
T 2pcj_A 2 AEILRAENIKKVIRG---YEILKGISLSV--KKGEFVSIIGASGSGKSTLLYILGLLD----APTEGKVFLEGKEVDYTN 72 (224)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEEECTTSCHHHHHHHHTTSS----CCSEEEEEETTEECCSSC
T ss_pred CcEEEEEeEEEEECC---EeeEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCCCC
Confidence 357999999999954 46899999999 999999999999999999999999999 89999853211
Q ss_pred ----------ce-EeccccCC-------Ccchh------------------hhhccCCCcc--cccccchHHHHHHHHHH
Q 005892 80 ----------GI-WMARCAGI-------EPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 ----------gi-~~~~~~~~-------~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iA 121 (671)
.+ ++...... ++..+ +++..|+... ......+++|+||++||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (224)
T 2pcj_A 73 EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA 152 (224)
T ss_dssp HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 01 01111000 11111 1111233221 12234577899999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
+|++ ++|||||||++||+.. +..+++++.++.++ |+|||+||||++.+ ..|++++++.+ |+++..|+
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 153 RALANEPILLFADEPTGNLDSAN------TKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp HHTTTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEET-TEEEEEEE
T ss_pred HHHHcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEEC-CEEEEEee
Confidence 9999 9999999999999999 99999999999776 99999999999877 67899988888 99998876
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=4e-29 Score=268.99 Aligned_cols=180 Identities=12% Similarity=0.084 Sum_probs=140.8
Q ss_pred eEEEEeeeEEeccccccc--cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc------
Q 005892 9 STQLIDGDGTFNVSGIEH--FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~--vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------ 80 (671)
+|+++|+++.|+. .. ++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINI--ENGERFGILGPSGAGKTTFMRIIAGLD----VPSTGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEE--CTTCEEEEECSCHHHHHHHHHHHHTSS----CCSEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEE--CCCCEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECcccc
Confidence 6999999999954 35 899999999 999999999999999999999999999 899998532211
Q ss_pred ------------eEecccc------CCCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHH
Q 005892 81 ------------IWMARCA------GIEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 81 ------------i~~~~~~------~~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAl 122 (671)
..++... ..++..+. ++..|+... ......+++|+|||+||+
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 1111100 00111111 111222211 112345678999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++++..+|+++++|.+ |+|+..|++.
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARM------RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGG------HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999 9999999999999998 99999999999765699999999999999888999999988 9999999998
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
+++.+
T Consensus 227 ~l~~~ 231 (353)
T 1oxx_K 227 DLYDN 231 (353)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 88754
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=8.5e-29 Score=252.95 Aligned_cols=179 Identities=17% Similarity=0.157 Sum_probs=137.4
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
+||+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 5 ~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA---IHAIKGIDLKV--PRGQIVTLIGANGAGKTTTLSAIAGLV----RAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEECTTCCH
T ss_pred ceEEEEeEEEEECC---eeEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCCCCH
Confidence 47999999999964 36899999999 999999999999999999999999999 89999853211
Q ss_pred ------ce-EeccccCC-------Ccchhh-----------------hhcc-CCCc--ccccccchHHHHHHHHHHHHHH
Q 005892 80 ------GI-WMARCAGI-------EPCTLI-----------------MDLE-GTDG--RERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 80 ------gi-~~~~~~~~-------~~~~~v-----------------ld~~-g~~~--~~r~~~~~~~qrQrv~iAlAL~ 125 (671)
++ ++...... ++..+. ++.. |+.. .......+++|+||++||+|++
T Consensus 76 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred HHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 01 11111000 111110 0000 0110 1122335677999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++|||||||++||+.. +..+++++.++.+ .|+|||+||||++.+...|++++++.+ |+++..|++.+++
T Consensus 156 ~~p~lllLDEPts~LD~~~------~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPIL------VSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLET-GQIVLEGKASELL 227 (240)
T ss_dssp TCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEET-TEEEEEEEHHHHH
T ss_pred cCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHh
Confidence 9999999999999999 9999999999976 499999999999888888999999888 9999999887765
Q ss_pred C
Q 005892 203 M 203 (671)
Q Consensus 203 ~ 203 (671)
.
T Consensus 228 ~ 228 (240)
T 1ji0_A 228 D 228 (240)
T ss_dssp T
T ss_pred c
Confidence 4
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=7.6e-29 Score=266.58 Aligned_cols=182 Identities=12% Similarity=0.141 Sum_probs=142.5
Q ss_pred cceEEEEeeeEEe-ccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 7 CCSTQLIDGDGTF-NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y-~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
.++|+++|+++.| +. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 12 ~~~l~~~~l~~~y~g~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~ 82 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGG---ARSVRGVSFQI--REGEMVGLLGPSGSGKTTILRLIAGLE----RPTKGDVWIGGKRVTDL 82 (355)
T ss_dssp CEEEEEEEEEECCTTS---TTCEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTC
T ss_pred CceEEEEEEEEEEcCC---CEEEeeeEEEE--CCCCEEEEECCCCCcHHHHHHHHhCCC----CCCccEEEECCEECCcC
Confidence 3579999999999 54 36899999999 999999999999999999999999999 89999853211
Q ss_pred -----c--eEecccc------CCCcchhh------------------hhccCCCcc--cccccchHHHHHHHHHHHHHH-
Q 005892 80 -----G--IWMARCA------GIEPCTLI------------------MDLEGTDGR--ERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 80 -----g--i~~~~~~------~~~~~~~v------------------ld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~- 125 (671)
. ..++... ..++..+. ++..|+... ......+++|+|||+||+||+
T Consensus 83 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 1 1111100 01111111 122233221 122345778999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
++|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++++..+|+++++|.+ |+|+..|++.+++.
T Consensus 163 ~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQI------RRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHE-GNVEQFGTPEEVYE 235 (355)
T ss_dssp CCSEEEEESTTCCSSHHH------HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999999999998 99999999999765699999999999999888999999988 99999999988865
Q ss_pred C
Q 005892 204 E 204 (671)
Q Consensus 204 ~ 204 (671)
.
T Consensus 236 ~ 236 (355)
T 1z47_A 236 K 236 (355)
T ss_dssp S
T ss_pred C
Confidence 4
No 19
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=1.6e-28 Score=256.35 Aligned_cols=190 Identities=16% Similarity=0.116 Sum_probs=143.4
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------ 80 (671)
.++|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 19 ~~~l~~~~l~~~y~~---~~vL~~isl~i--~~Ge~~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG---KTILKKISWQI--AKGDKWILYGLNGAGKTTLLNILNAYE----PATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTBCCC---
T ss_pred CceEEEEeEEEEECC---EEEEEeeeEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCCeEEEECCEEccccc
Confidence 357999999999964 36899999999 999999999999999999999999999 899998532110
Q ss_pred ---------e--EeccccC-CCcchhhhh-----------------------------ccCCCcc--cccccchHHHHHH
Q 005892 81 ---------I--WMARCAG-IEPCTLIMD-----------------------------LEGTDGR--ERGEDDTAFEKQS 117 (671)
Q Consensus 81 ---------i--~~~~~~~-~~~~~~vld-----------------------------~~g~~~~--~r~~~~~~~qrQr 117 (671)
+ ..+.... ......+.+ ..|+... ......+++|+||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQR 169 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 1 0010000 000001111 1122111 1122346779999
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEE--EEEecCCCcccccccchhhhhcCCeE
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL--MFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TI--l~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
++||+|++ ++|||||||++||+.. +..++++|.++.++ |+|| |+||||++.+...|++++++.+ |+|
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~-G~i 241 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIA------RESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKD-GQS 241 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEET-TEE
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHH------HHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEEC-CEE
Confidence 99999999 9999999999999999 99999999999765 8999 9999999998888999999988 999
Q ss_pred EEecCcccccCCccccchhcc
Q 005892 193 WDSVPKPQAHMETPLSEFFNV 213 (671)
Q Consensus 193 ~~~g~~~e~~~~~~l~~~f~~ 213 (671)
+..|++++++....+.++|+.
T Consensus 242 ~~~g~~~~~~~~~~~~~~~~~ 262 (279)
T 2ihy_A 242 IQQGAVEDILTSENMSRFFQK 262 (279)
T ss_dssp EEEEEHHHHCSHHHHHHHHTS
T ss_pred EEECCHHHHhccHHHHHHhCC
Confidence 999988877654444455543
No 20
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=6.4e-29 Score=268.87 Aligned_cols=182 Identities=14% Similarity=0.147 Sum_probs=140.3
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
|.+|+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 9 M~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~ 79 (372)
T 1v43_A 9 MVEVKLENLTKRFGN---FTAVNKLNLTI--KDGEFLVLLGPSGCGKTTTLRMIAGLE----EPTEGRIYFGDRDVTYLP 79 (372)
T ss_dssp CCCEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSC
T ss_pred eeeEEEEEEEEEECC---EEEEeeeEEEE--CCCCEEEEECCCCChHHHHHHHHHcCC----CCCceEEEECCEECCCCC
Confidence 446999999999954 36899999999 999999999999999999999999999 89999853211
Q ss_pred ------ceEecccc------CCCcchh------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH--
Q 005892 80 ------GIWMARCA------GIEPCTL------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS-- 125 (671)
Q Consensus 80 ------gi~~~~~~------~~~~~~~------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~-- 125 (671)
+..++... ..++..+ +++..|+... ......+++|+|||+||+||+
T Consensus 80 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 80 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp GGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 11111100 0011111 1111222111 111234556999999999999
Q ss_pred -HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCC
Q 005892 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 126 -evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~ 204 (671)
++|||||||++||+.. +..+.+.|+++.++.|+|+|+||||++++..+||++++|.+ |+|+..|++.+++..
T Consensus 160 P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKL------RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR-GQLLQIGSPTEVYLR 232 (372)
T ss_dssp CSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHC
T ss_pred CCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHhC
Confidence 9999999999999998 99999999999765689999999999999888999999988 999999999888754
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=4.1e-28 Score=251.60 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=140.8
Q ss_pred eEEEEeeeEEeccccc--cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVSGI--EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l--~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
||+++|+++.|+.... ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i--~~Ge~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~I~~~g~~~~~~~ 75 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVI--NEGECLLVAGNTGSGKSTLLQIVAGLI----EPTSGDVLYDGERKKGYE 75 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEECCHHH
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEECCEECchHH
Confidence 6999999999962111 36899999999 999999999999999999999999999 89999853211
Q ss_pred -----ceEeccc-cC------CCcchh-----------------hhhccCCC--cc--cccccchHHHHHHHHHHHHHH-
Q 005892 80 -----GIWMARC-AG------IEPCTL-----------------IMDLEGTD--GR--ERGEDDTAFEKQSALFALAVS- 125 (671)
Q Consensus 80 -----gi~~~~~-~~------~~~~~~-----------------vld~~g~~--~~--~r~~~~~~~qrQrv~iAlAL~- 125 (671)
+...+.. .. .++..+ +++..|+. .. ......+++|+||++||+|++
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc
Confidence 1111110 00 011111 12223443 21 122346788999999999999
Q ss_pred --HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 126 --evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
++|||||||++||+.. +..++++|.++.++ |.|||+||||++.+...|++++++.+ |+++..|++.+++.
T Consensus 156 ~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREG------KTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEK-GKKVFDGTRMEFLE 227 (266)
T ss_dssp CCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEET-TEEEEEEEHHHHHH
T ss_pred CCCEEEEcCccccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 9999999999999999 99999999999766 99999999999999888999999888 99999998877654
Q ss_pred C
Q 005892 204 E 204 (671)
Q Consensus 204 ~ 204 (671)
.
T Consensus 228 ~ 228 (266)
T 2yz2_A 228 K 228 (266)
T ss_dssp H
T ss_pred C
Confidence 3
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.94 E-value=3.3e-28 Score=248.67 Aligned_cols=176 Identities=13% Similarity=0.145 Sum_probs=135.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|+++.|+. ++.++++.+ .+ ++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 1 ml~~~~l~~~y~~-----~l~~isl~i--~~-e~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 1 MFLKVRAEKRLGN-----FRLNVDFEM--GR-DYCVLLGPTGAGKSVFLELIAGIV----KPDRGEVRLNGADITPLPPE 68 (240)
T ss_dssp CCEEEEEEEEETT-----EEEEEEEEE--CS-SEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCTT
T ss_pred CEEEEEEEEEeCC-----EEeeeEEEE--CC-EEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCchh
Confidence 4899999999943 488999999 88 999999999999999999999999 89999853211
Q ss_pred --ce-EeccccCC-------Ccchh----------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHH
Q 005892 80 --GI-WMARCAGI-------EPCTL----------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIV 128 (671)
Q Consensus 80 --gi-~~~~~~~~-------~~~~~----------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evL 128 (671)
.+ ++...... ++..+ +++..|+... ......+++|+||+++|+|++ ++|
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 148 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 00 00000000 01100 1122233221 122345778999999999999 999
Q ss_pred hccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 129 lLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
||||||++||+.. +..+++++.++.++.|+|||+||||++.+...|++++++.+ |+++..|++.+++.
T Consensus 149 lLDEPts~LD~~~------~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 149 LLDEPLSAVDLKT------KGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN-GRIVEKGKLKELFS 216 (240)
T ss_dssp EEESTTSSCCHHH------HHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9999999999999 99999999999654589999999999988888999999888 99999998877654
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=1.2e-27 Score=245.91 Aligned_cols=174 Identities=16% Similarity=0.085 Sum_probs=130.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcc--cCCCCCCCCCeeeccC-------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT--NFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl--~f~~m~p~sG~~q~~~------- 79 (671)
||+++|+++.|+. ..++.++++.+ .+|++++|+||||||||||+|+|+|+ . +|++|++...+
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~----~p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVV--PKGEVHALMGPNGAGKSTLGKILAGDPEY----TVERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHTCTTC----EEEEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEECC---EEEEeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCCC----CCCceEEEECCEECCCCC
Confidence 6999999999954 46899999999 99999999999999999999999998 5 68889743211
Q ss_pred -------ce-EeccccCC-------Ccchh---------------------hhhccCCC-c--cccccc-chHHHHHHHH
Q 005892 80 -------GI-WMARCAGI-------EPCTL---------------------IMDLEGTD-G--RERGED-DTAFEKQSAL 119 (671)
Q Consensus 80 -------gi-~~~~~~~~-------~~~~~---------------------vld~~g~~-~--~~r~~~-~~~~qrQrv~ 119 (671)
++ ++...... ++..+ +++..|+. . ...... .+++|+||++
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~ 153 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNE 153 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHH
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 11 01110000 11111 11112442 1 112234 6889999999
Q ss_pred HHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc-ccchhhhhcCCeEEEe
Q 005892 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKIWDS 195 (671)
Q Consensus 120 iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~-~~~~~ll~~~GkI~~~ 195 (671)
||+|++ ++|||||||++||+.. +..++++|.++.+ .|+|||+||||++.+... |++++++.+ |+++..
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~-G~i~~~ 225 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDA------LKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMD-GRVVAT 225 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHH------HHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEET-TEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEEC-CEEEEE
Confidence 999999 9999999999999999 9999999999965 499999999999988877 588888887 999998
Q ss_pred cCcc
Q 005892 196 VPKP 199 (671)
Q Consensus 196 g~~~ 199 (671)
|++.
T Consensus 226 g~~~ 229 (250)
T 2d2e_A 226 GGPE 229 (250)
T ss_dssp ESHH
T ss_pred eCHH
Confidence 8765
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.94 E-value=2.5e-28 Score=262.15 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=142.2
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
||+++|++++|+. . ++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 1 ml~~~~l~~~y~~---~-~l~~vsl~i--~~Ge~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~~~g~~i~~~~~~ 70 (348)
T 3d31_A 1 MIEIESLSRKWKN---F-SLDNLSLKV--ESGEYFVILGPTGAGKTLFLELIAGFH----VPDSGRILLDGKDVTDLSPE 70 (348)
T ss_dssp CEEEEEEEEECSS---C-EEEEEEEEE--CTTCEEEEECCCTHHHHHHHHHHHTSS----CCSEEEEEETTEECTTSCHH
T ss_pred CEEEEEEEEEECC---E-EEeeeEEEE--cCCCEEEEECCCCccHHHHHHHHHcCC----CCCCcEEEECCEECCCCchh
Confidence 4899999999953 3 899999999 999999999999999999999999999 89999853211
Q ss_pred ----ceEeccc------cCCCcchh---------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHh
Q 005892 80 ----GIWMARC------AGIEPCTL---------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVL 129 (671)
Q Consensus 80 ----gi~~~~~------~~~~~~~~---------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLl 129 (671)
+..++.. +..++..+ +++..|+... ......+++|+|||+||+|++ ++||
T Consensus 71 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL 150 (348)
T 3d31_A 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL 150 (348)
T ss_dssp HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1111111 00111111 1222233321 122456788999999999999 9999
Q ss_pred ccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccCCc
Q 005892 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMET 205 (671)
Q Consensus 130 LDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~~~ 205 (671)
|||||++||+.. +..+.+.|+++.++.|+|+|+||||++++..+|+++++|.+ |+|+..|++.+++..+
T Consensus 151 LDEP~s~LD~~~------~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~-G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 151 LDEPLSALDPRT------QENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMD-GKLIQVGKPEEIFEKP 219 (348)
T ss_dssp EESSSTTSCHHH------HHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESS-SCEEEEECHHHHHSSC
T ss_pred EECccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHHhCc
Confidence 999999999998 99999999999766699999999999999888999999988 9999999999887543
No 25
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.94 E-value=1.8e-27 Score=242.81 Aligned_cols=178 Identities=19% Similarity=0.162 Sum_probs=133.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE-eccc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-MARC 86 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~-~~~~ 86 (671)
.+|+++|+++.|+.. ...++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.+- +...
T Consensus 2 ~~l~~~~l~~~y~~~-~~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~i~~v~Q~ 74 (237)
T 2cbz_A 2 NSITVRNATFTWARS-DPPTLNGITFSI--PEGALVAVVGQVGCGKSSLLSALLAEM----DKVEGHVAIKGSVAYVPQQ 74 (237)
T ss_dssp CCEEEEEEEEESCTT-SCCSEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTCS----EEEEEEEEECSCEEEECSS
T ss_pred CeEEEEEEEEEeCCC-CCceeeeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEEEEEcCC
Confidence 369999999999631 246899999999 999999999999999999999999999 89999854332221 1111
Q ss_pred cC------CCcchh-----------hhhc------cCCC-------cccccccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 87 AG------IEPCTL-----------IMDL------EGTD-------GRERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 87 ~~------~~~~~~-----------vld~------~g~~-------~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
.. .++..+ +.+. .+.. ...+....+++|+||+++|+|++ ++||||||
T Consensus 75 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 75 AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 154 (237)
T ss_dssp CCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred CcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 10 011110 0010 0110 01223456789999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHHHHH---HhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 134 CHDIGREQAANKPLLKTVFQVMM---RLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~ell~---~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
|++||+.. +..+++.+. ++ . .|+|+|+||||++.+. .|++++++.+ |+|+..|+++++.
T Consensus 155 ts~LD~~~------~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~-~~d~v~~l~~-G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 155 LSAVDAHV------GKHIFENVIGPKGM-L-KNKTRILVTHSMSYLP-QVDVIIVMSG-GKISEMGSYQELL 216 (237)
T ss_dssp TTTSCHHH------HHHHHHHTTSTTST-T-TTSEEEEECSCSTTGG-GSSEEEEEET-TEEEEEECHHHHH
T ss_pred ccccCHHH------HHHHHHHHHHHHhh-c-CCCEEEEEecChHHHH-hCCEEEEEeC-CEEEEeCCHHHHh
Confidence 99999998 899999885 33 2 3899999999998875 5888888887 9999999887664
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=2.8e-27 Score=245.99 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=136.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
.+|+++|+++.|+......++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTL--YPGKVTALVGPNGSGKSTVAALLQNLY----QPTGGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEEGGGBCH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEECCEEcccCCH
Confidence 4699999999996411246899999999 999999999999999999999999999 89999853211
Q ss_pred -----ce-EeccccCCCcchhhhhcc-------------------------------CCCc--ccccccchHHHHHHHHH
Q 005892 80 -----GI-WMARCAGIEPCTLIMDLE-------------------------------GTDG--RERGEDDTAFEKQSALF 120 (671)
Q Consensus 80 -----gi-~~~~~~~~~~~~~vld~~-------------------------------g~~~--~~r~~~~~~~qrQrv~i 120 (671)
.+ ++.......+. .+.+.. |+.. .......+++|+||++|
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~l 167 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVAL 167 (271)
T ss_dssp HHHHHHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHH
T ss_pred HHHhccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHH
Confidence 00 11111000000 111110 1110 11223457889999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
|+|++ ++|||||||++||+.. +..++++|.++.++.|+|||+||||++.+.. |++++++.+ |+|+..|+
T Consensus 168 AraL~~~p~lllLDEPts~LD~~~------~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~-G~i~~~g~ 239 (271)
T 2ixe_A 168 ARALIRKPRLLILDNATSALDAGN------QLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKE-GSVCEQGT 239 (271)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHH------HHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEET-TEEEEEEC
T ss_pred HHHHhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEEC-CEEEEECC
Confidence 99999 9999999999999999 9999999999975569999999999988764 899888888 99999998
Q ss_pred ccccc
Q 005892 198 KPQAH 202 (671)
Q Consensus 198 ~~e~~ 202 (671)
+.+++
T Consensus 240 ~~~l~ 244 (271)
T 2ixe_A 240 HLQLM 244 (271)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.94 E-value=1.1e-27 Score=246.13 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=134.5
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------- 80 (671)
+||+++|+++. .++.++++.+ .+|++++|+||||||||||||+|+|+. +|+ |++...+.
T Consensus 3 ~~l~~~~l~~~-------~vl~~vsl~i--~~Ge~~~liG~NGsGKSTLlk~l~Gl~----~p~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 3 IVMQLQDVAES-------TRLGPLSGEV--RAGEILHLVGPNGAGKSTLLARMAGMT----SGK-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEEEET-------TTEEEEEEEE--ETTCEEEEECCTTSSHHHHHHHHTTSS----CCE-EEEEETTEEGGGSCH
T ss_pred cEEEEEceEEE-------EEEeeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhCCC----CCC-eEEEECCEECCcCCH
Confidence 36999999976 4788999999 999999999999999999999999999 899 98532110
Q ss_pred ------e-EeccccCCCcchh--------------------hhhccCCCcc--cccccchHHHHHHHHHHHHHH---H--
Q 005892 81 ------I-WMARCAGIEPCTL--------------------IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---D-- 126 (671)
Q Consensus 81 ------i-~~~~~~~~~~~~~--------------------vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---e-- 126 (671)
+ ++........... +++..|+... ......+++|+||++||+|++ +
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~ 148 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA 148 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcC
Confidence 0 1111111000001 1122233221 122345678999999999999 8
Q ss_pred -----HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 127 -----IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 127 -----vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+|||||||++||+.. +..+.+++.++.++ |+|||+||||++.+...|++++++.+ |+++..|+++++
T Consensus 149 ~~~~~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~~~ 220 (249)
T 2qi9_C 149 NPAGQLLLLDEPMNSLDVAQ------QSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKG-GKMLASGRREEV 220 (249)
T ss_dssp CTTCCEEEESSTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEEEHHHH
T ss_pred CCCCeEEEEECCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHH
Confidence 999999999999999 99999999999766 99999999999988888999998888 999999988777
Q ss_pred cC
Q 005892 202 HM 203 (671)
Q Consensus 202 ~~ 203 (671)
+.
T Consensus 221 ~~ 222 (249)
T 2qi9_C 221 LT 222 (249)
T ss_dssp SC
T ss_pred hc
Confidence 64
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.94 E-value=5.6e-27 Score=243.25 Aligned_cols=180 Identities=16% Similarity=0.052 Sum_probs=135.3
Q ss_pred cceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------
Q 005892 7 CCSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (671)
Q Consensus 7 ~~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------- 79 (671)
+++|+++|+++.|++ ..++.++++.+ .+|++++|+||||||||||||+|+|+.. .+|++|++...+
T Consensus 18 ~~~l~~~~l~~~y~~---~~vl~~vsl~i--~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~--~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED---KAILRGLSLDV--HPGEVHAIMGPNGSGKSTLSATLAGRED--YEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETT---EEEEEEEEEEE--CTTCEEEEECCTTSSHHHHHHHHHTCTT--CEEEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECC---EEEEEeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCeEEEECCEECCcCC
Confidence 357999999999954 46899999999 9999999999999999999999999830 047888743111
Q ss_pred -------ce-EeccccCC-------Ccch-------------------------hhhhccCCCc-c-c-ccc-cchHHHH
Q 005892 80 -------GI-WMARCAGI-------EPCT-------------------------LIMDLEGTDG-R-E-RGE-DDTAFEK 115 (671)
Q Consensus 80 -------gi-~~~~~~~~-------~~~~-------------------------~vld~~g~~~-~-~-r~~-~~~~~qr 115 (671)
++ ++...... ++.. -+++..|+.. . . ... ..+++||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 11 11111100 0000 0122234431 1 1 222 3789999
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc-ccchhhhhcCCe
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQK 191 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~-~~~~~ll~~~Gk 191 (671)
||++||+|++ ++|||||||++||+.. +..++++|.++.++ |+|||+||||++.+... |++++++.+ |+
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v~~l~~-G~ 242 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDA------LKVVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQ-GR 242 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHH------HHHHHHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEEEEEET-TE
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEEEEEEC-CE
Confidence 9999999999 9999999999999999 99999999999654 99999999999988775 788888887 99
Q ss_pred EEEecCcccc
Q 005892 192 IWDSVPKPQA 201 (671)
Q Consensus 192 I~~~g~~~e~ 201 (671)
|+..|+++++
T Consensus 243 i~~~g~~~~~ 252 (267)
T 2zu0_C 243 IVKSGDFTLV 252 (267)
T ss_dssp EEEEECTTHH
T ss_pred EEEEcCHHHH
Confidence 9999987654
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=7.1e-27 Score=239.78 Aligned_cols=177 Identities=15% Similarity=0.133 Sum_probs=134.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
-|+++|+++.|.+. ...++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPD-SPVILDNINLSI--KQGEVIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCCC-CcceeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEhhhCCHH
Confidence 58999999999321 136899999999 999999999999999999999999999 89999853211
Q ss_pred ----ce-EeccccCCCcchhhhhcc-------------------CCCc-------------ccccccchHHHHHHHHHHH
Q 005892 80 ----GI-WMARCAGIEPCTLIMDLE-------------------GTDG-------------RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ----gi-~~~~~~~~~~~~~vld~~-------------------g~~~-------------~~r~~~~~~~qrQrv~iAl 122 (671)
.+ ++.......+ ..+.+.. ++.. .......+++|+||++||+
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence 00 1111110000 0111111 1110 0112356788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++|||||||++||+.. +..++++|.++. + |+|||+||||++.+.. |++++++.+ |+|+..|++.
T Consensus 159 aL~~~p~lllLDEPts~LD~~~------~~~i~~~l~~~~-~-g~tviivtH~~~~~~~-~d~v~~l~~-G~i~~~g~~~ 228 (247)
T 2ff7_A 159 ALVNNPKILIFDEATSALDYES------EHVIMRNMHKIC-K-GRTVIIIAHRLSTVKN-ADRIIVMEK-GKIVEQGKHK 228 (247)
T ss_dssp HHTTCCSEEEECCCCSCCCHHH------HHHHHHHHHHHH-T-TSEEEEECSSGGGGTT-SSEEEEEET-TEEEEEECHH
T ss_pred HHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHc-C-CCEEEEEeCCHHHHHh-CCEEEEEEC-CEEEEECCHH
Confidence 999 9999999999999999 999999999994 4 8999999999988764 899888888 9999999887
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
+++.
T Consensus 229 ~l~~ 232 (247)
T 2ff7_A 229 ELLS 232 (247)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7654
No 30
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.93 E-value=3.4e-27 Score=239.44 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=133.8
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE-eccc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-MARC 86 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~-~~~~ 86 (671)
.+|+++|+++.|+.. ...++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.+- +...
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~i~~v~q~ 77 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKI--ERGQLLAVAGSTGAGKTSLLMMIMGEL----EPSEGKIKHSGRISFCSQF 77 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEE--ETTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEECSCEEEECSS
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----cCCccEEEECCEEEEEecC
Confidence 479999999999531 246899999999 999999999999999999999999999 89999854332221 1111
Q ss_pred cC------CCcchh-----------hhhccCCCc-------------ccccccchHHHHHHHHHHHHHH---HHHhcccc
Q 005892 87 AG------IEPCTL-----------IMDLEGTDG-------------RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (671)
Q Consensus 87 ~~------~~~~~~-----------vld~~g~~~-------------~~r~~~~~~~qrQrv~iAlAL~---evLlLDEp 133 (671)
.. .++..+ .++..++.. .......+++|+||+++|+|++ ++||||||
T Consensus 78 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 78 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp CCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 11 111111 001111110 0112456788999999999999 99999999
Q ss_pred ccCCChhhhhChhHHHHHHHHH-HHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccccC
Q 005892 134 CHDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~ell-~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
|++||+.. +..+++.+ .++. + |+|+|+||||++.+. .|++++++.+ |+++..|+++++..
T Consensus 158 ts~LD~~~------~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~-G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 158 FGYLDVLT------EKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHE-GSSYFYGTFSELQN 218 (229)
T ss_dssp TTTSCHHH------HHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HCSEEEEEET-TEEEEEECHHHHHT
T ss_pred ccCCCHHH------HHHHHHHHHHHhh-C-CCEEEEEcCChHHHH-hCCEEEEEEC-CEEEEECCHHHHHh
Confidence 99999998 88888864 4553 3 899999999998775 4889888888 99999998877654
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.93 E-value=7.5e-27 Score=238.93 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=132.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
||+++|+++.|++ ...++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 1 ml~~~~l~~~y~~--~~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 72 (243)
T 1mv5_A 1 MLSARHVDFAYDD--SEQILRDISFEA--QPNSIIAFAGPSGGGKSTIFSLLERFY----QPTAGEITIDGQPIDNISLE 72 (243)
T ss_dssp CEEEEEEEECSSS--SSCSEEEEEEEE--CTTEEEEEECCTTSSHHHHHHHHTTSS----CCSBSCEEETTEESTTTSCS
T ss_pred CEEEEEEEEEeCC--CCceEEEeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEhhhCCHH
Confidence 4899999999942 146899999999 999999999999999999999999999 899998532110
Q ss_pred -----e-EeccccCCCcchhhhhc--------------------cCCCcc-------------cccccchHHHHHHHHHH
Q 005892 81 -----I-WMARCAGIEPCTLIMDL--------------------EGTDGR-------------ERGEDDTAFEKQSALFA 121 (671)
Q Consensus 81 -----i-~~~~~~~~~~~~~vld~--------------------~g~~~~-------------~r~~~~~~~qrQrv~iA 121 (671)
+ ++.......+. .+.+. .++... ......+++|+||+++|
T Consensus 73 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp CCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred HHHhhEEEEcCCCccccc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 0 01000000000 11111 121110 11235678899999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+|++ ++|||||||++||+.. +..+++.+.++. + |+|||+||||++.+. .|++++++.+ |+++..|++
T Consensus 152 ral~~~p~lllLDEPts~LD~~~------~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 152 RAFLRNPKILMLDEATASLDSES------ESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp HHHHHCCSEEEEECCSCSSCSSS------CCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEET-TEECCCSCH
T ss_pred HHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEEC-CEEEEeCCH
Confidence 9999 9999999999999998 999999999986 4 899999999998775 4899888888 999988887
Q ss_pred cccc
Q 005892 199 PQAH 202 (671)
Q Consensus 199 ~e~~ 202 (671)
.+++
T Consensus 222 ~~~~ 225 (243)
T 1mv5_A 222 NELV 225 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.93 E-value=6.4e-27 Score=247.13 Aligned_cols=176 Identities=15% Similarity=0.162 Sum_probs=135.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
.|+++|+++.|++. ..++.+++|.+ .+|++++|+||||||||||+++|+|+. +|++|++... |..
T Consensus 53 ~i~~~~vs~~y~~~--~~vL~~isl~i--~~Ge~vaivG~sGsGKSTLl~ll~gl~----~p~~G~I~i~-G~~i~~~~~ 123 (306)
T 3nh6_A 53 RIEFENVHFSYADG--RETLQDVSFTV--MPGQTLALVGPSGAGKSTILRLLFRFY----DISSGCIRID-GQDISQVTQ 123 (306)
T ss_dssp CEEEEEEEEESSTT--CEEEEEEEEEE--CTTCEEEEESSSCHHHHHHHHHHTTSS----CCSEEEEEET-TEETTSBCH
T ss_pred eEEEEEEEEEcCCC--CceeeeeeEEE--cCCCEEEEECCCCchHHHHHHHHHcCC----CCCCcEEEEC-CEEcccCCH
Confidence 59999999999642 46899999999 999999999999999999999999999 8999984321 111
Q ss_pred ---------eccccC------CCcchhh------------hhccCC-----------C--cccccccchHHHHHHHHHHH
Q 005892 83 ---------MARCAG------IEPCTLI------------MDLEGT-----------D--GRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 83 ---------~~~~~~------~~~~~~v------------ld~~g~-----------~--~~~r~~~~~~~qrQrv~iAl 122 (671)
+..... .+++.+. +...++ . -.+++...+++||||++||+
T Consensus 124 ~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiAR 203 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203 (306)
T ss_dssp HHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred HHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHH
Confidence 110000 0111110 000011 0 01223356788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++|||||||++||+.. ...|++.|.++.+ +.|+|+|||++..+.. ||++++|.+ |+|++.|++.
T Consensus 204 AL~~~p~iLlLDEPts~LD~~~------~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~-G~iv~~G~~~ 273 (306)
T 3nh6_A 204 TILKAPGIILLDEATSALDTSN------ERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKD-GCIVERGRHE 273 (306)
T ss_dssp HHHHCCSEEEEECCSSCCCHHH------HHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEET-TEEEEEECHH
T ss_pred HHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEEC-CEEEEECCHH
Confidence 999 9999999999999998 9999999999864 6899999999988875 899999988 9999999988
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
+++.
T Consensus 274 el~~ 277 (306)
T 3nh6_A 274 ALLS 277 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=1.6e-26 Score=238.85 Aligned_cols=178 Identities=15% Similarity=0.108 Sum_probs=133.1
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
++|+++|+++.|+......++.++++.+ .+|++++|+||||||||||||+|+|+. +| +|++...+
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i--~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~~-~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFI--PSGTTCALVGHTGSGKSTIAKLLYRFY----DA-EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEE--CTTCEEEEECSTTSSHHHHHHHHTTSS----CC-EEEEEETTEEGGGBCH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEE--CCCCEEEEECCCCCCHHHHHHHHhccC----CC-CeEEEECCEEhhhcCH
Confidence 4699999999996421135899999999 999999999999999999999999998 56 78742211
Q ss_pred -----ce-EeccccCC------Ccchh------------hhhccCCCc-------------ccccccchHHHHHHHHHHH
Q 005892 80 -----GI-WMARCAGI------EPCTL------------IMDLEGTDG-------------RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 -----gi-~~~~~~~~------~~~~~------------vld~~g~~~-------------~~r~~~~~~~qrQrv~iAl 122 (671)
.+ ++...... ++..+ .++..++.. ..+....+++|+||+++|+
T Consensus 89 ~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAr 168 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIAR 168 (260)
T ss_dssp HHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHH
T ss_pred HHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHH
Confidence 01 11110000 01100 001111110 0122356788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++|||||||++||+.. +..+++++.++. + |+|||+||||++.+. .|++++++.+ |+|+..|+++
T Consensus 169 aL~~~p~lllLDEPts~LD~~~------~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~-G~i~~~g~~~ 238 (260)
T 2ghi_A 169 CLLKDPKIVIFDEATSSLDSKT------EYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNK-GKIVEKGTHK 238 (260)
T ss_dssp HHHHCCSEEEEECCCCTTCHHH------HHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEET-TEEEEEECHH
T ss_pred HHHcCCCEEEEECccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEEC-CEEEEECCHH
Confidence 999 9999999999999998 999999999985 3 799999999998876 4899888888 9999999877
Q ss_pred ccc
Q 005892 200 QAH 202 (671)
Q Consensus 200 e~~ 202 (671)
+++
T Consensus 239 ~l~ 241 (260)
T 2ghi_A 239 DLL 241 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 34
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=6.1e-26 Score=234.95 Aligned_cols=176 Identities=15% Similarity=0.105 Sum_probs=135.0
Q ss_pred eEEEEeeeEEeccc-cccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~-~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
||+++|+++.|+.. ....++.++++.+ . |++++|+||||||||||||+|+|+. |++|++...+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i--~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-----p~~G~I~~~g~~~~~~~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEV--N-GEKVIILGPNGSGKTTLLRAISGLL-----PYSGNIFINGMEVRKIRN 72 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEE--C-SSEEEEECCTTSSHHHHHHHHTTSS-----CCEEEEEETTEEGGGCSC
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEE--C-CEEEEEECCCCCCHHHHHHHHhCCC-----CCCcEEEECCEECcchHH
Confidence 48999999999541 0136899999999 8 9999999999999999999999997 7788753211
Q ss_pred --ce--EeccccCC-----Ccchh--------------hhhccCCC-c--ccccccchHHHHHHHHHHHHHH---HHHhc
Q 005892 80 --GI--WMARCAGI-----EPCTL--------------IMDLEGTD-G--RERGEDDTAFEKQSALFALAVS---DIVLI 130 (671)
Q Consensus 80 --gi--~~~~~~~~-----~~~~~--------------vld~~g~~-~--~~r~~~~~~~qrQrv~iAlAL~---evLlL 130 (671)
.+ ++...... ++..+ +++..|+. . .......+++|+||+++|+|++ ++|||
T Consensus 73 ~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 73 YIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp CTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred hhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 11 11111110 11111 12223444 2 1233456788999999999999 99999
Q ss_pred cccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc-chhhhhcCCeEEEecCcccccC
Q 005892 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 131 DEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~-~~~ll~~~GkI~~~g~~~e~~~ 203 (671)
||||++||+.. +..+++++.++.+ |+|+||||++.+...|+ +++++.+ |+++..|++++++.
T Consensus 153 DEPts~LD~~~------~~~l~~~L~~~~~----tviivtHd~~~~~~~~d~~i~~l~~-G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 153 DEPFENVDAAR------RHVISRYIKEYGK----EGILVTHELDMLNLYKEYKAYFLVG-NRLQGPISVSELLE 215 (263)
T ss_dssp ECTTTTCCHHH------HHHHHHHHHHSCS----EEEEEESCGGGGGGCTTSEEEEEET-TEEEEEEEHHHHHT
T ss_pred ECCccccCHHH------HHHHHHHHHHhcC----cEEEEEcCHHHHHHhcCceEEEEEC-CEEEEecCHHHHHh
Confidence 99999999999 9999999999843 99999999999888899 9888888 99999999887764
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.92 E-value=1.1e-25 Score=226.23 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=125.2
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
.+|+++|+++.|+. .++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+
T Consensus 9 ~~l~~~~ls~~y~~----~il~~vsl~i--~~Ge~~~iiG~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK----PVLERITMTI--EKGNVVNFHGPNGIGKTTLLKTISTYL----KPLKGEIIYNGVPITKVKG 78 (214)
T ss_dssp CEEEEEEEEEESSS----EEEEEEEEEE--ETTCCEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEEGGGGGG
T ss_pred ceEEEEEEEEEeCC----eEEeeeEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEhhhhcC
Confidence 47999999999942 6899999999 999999999999999999999999999 89999853221
Q ss_pred ce-EeccccC-------CCcchh----------------hhhccCCCc-ccccccchHHHHHHHHHHHHHH---HHHhcc
Q 005892 80 GI-WMARCAG-------IEPCTL----------------IMDLEGTDG-RERGEDDTAFEKQSALFALAVS---DIVLIN 131 (671)
Q Consensus 80 gi-~~~~~~~-------~~~~~~----------------vld~~g~~~-~~r~~~~~~~qrQrv~iAlAL~---evLlLD 131 (671)
.+ ++..... .++..+ +++..|+.. .......+++|+||+++|+|++ ++||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 11 1111111 011111 112223332 2223456788999999999999 999999
Q ss_pred ccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeE
Q 005892 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (671)
Q Consensus 132 Ept~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI 192 (671)
|||++||+.. +..+++++.++.++ |+|||+||||++.+...|++++ +.. |+|
T Consensus 159 EPts~LD~~~------~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~-~~~-~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDS------KHKVLKSILEILKE-KGIVIISSREELSYCDVNENLH-KYS-TKI 210 (214)
T ss_dssp STTTTSCTTT------HHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGG-GGB-C--
T ss_pred CCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE-EeC-Ccc
Confidence 9999999999 99999999998754 8999999999999887676655 444 666
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.91 E-value=9.6e-26 Score=245.44 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=133.7
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC--------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------- 79 (671)
..|+++|+++.|... ...++.++++.+ .+|++++|+||||||||||||+|+|+. + ++|++...+
T Consensus 18 ~~i~~~~l~~~y~~~-~~~~L~~vsl~i--~~Ge~~~llGpsGsGKSTLLr~iaGl~----~-~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG-GNAILENISFSI--SPGQRVGLLGRTGSGKSTLLSAFLRLL----N-TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESSSS-SCCSEEEEEEEE--CTTCEEEEEESTTSSHHHHHHHHHTCS----E-EEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEecCC-CeEEeeceeEEE--cCCCEEEEECCCCChHHHHHHHHhCCC----C-CCeEEEECCEECCcCCh
Confidence 469999999999531 247899999999 999999999999999999999999998 5 778742111
Q ss_pred -------ceEeccccCC-----Ccc-----------hhhhhccCCCccc--ccc-----------cchHHHHHHHHHHHH
Q 005892 80 -------GIWMARCAGI-----EPC-----------TLIMDLEGTDGRE--RGE-----------DDTAFEKQSALFALA 123 (671)
Q Consensus 80 -------gi~~~~~~~~-----~~~-----------~~vld~~g~~~~~--r~~-----------~~~~~qrQrv~iAlA 123 (671)
+..++....+ ++. .-+++..++.... ... ..+++|+|||+||+|
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 0111110000 000 0011122221110 111 168899999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
|+ ++|||||||++||+.. +..+.+.|+++. .++|+|+||||++.+. .||++++|.+ |+|+..|++.+
T Consensus 170 L~~~P~lLLLDEPts~LD~~~------~~~l~~~l~~~~--~~~tvi~vtHd~e~~~-~aDri~vl~~-G~i~~~g~~~e 239 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVT------YQIIRRTLKQAF--ADCTVILCEARIEAML-ECDQFLVIEE-NKVRQYDSILE 239 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHH------HHHHHHHHHTTT--TTSCEEEECSSSGGGT-TCSEEEEEET-TEEEEESSHHH
T ss_pred HhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHh--CCCEEEEEEcCHHHHH-hCCEEEEEEC-CEEEEECCHHH
Confidence 99 9999999999999988 999999998874 3899999999986554 5999999988 99999999998
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
++..
T Consensus 240 l~~~ 243 (390)
T 3gd7_A 240 LYHY 243 (390)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8754
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=4.7e-25 Score=231.36 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=120.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE-eccc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-MARC 86 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~-~~~~ 86 (671)
++|+++|+++.+ ..++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+.+- +...
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i--~~Ge~~~i~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~i~~v~Q~ 107 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKI--ERGQLLAVAGSTGAGKTSLLMMIMGEL----EPSEGKIKHSGRISFCSQN 107 (290)
T ss_dssp -----------C-----CCSEEEEEEEE--CTTCEEEEEESTTSSHHHHHHHHTTSS----CEEEEEEECCSCEEEECSS
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCEEEEEeCC
Confidence 468999999854 36899999999 999999999999999999999999999 89999854332221 1111
Q ss_pred cCC------Ccch----------hhhhccCCCcc-------------cccccchHHHHHHHHHHHHHH---HHHhccccc
Q 005892 87 AGI------EPCT----------LIMDLEGTDGR-------------ERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (671)
Q Consensus 87 ~~~------~~~~----------~vld~~g~~~~-------------~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt 134 (671)
... ++.. ..++..++... ......+++|+||++||+|++ ++|||||||
T Consensus 108 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 108 SWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp CCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred CccCcccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 111 1110 00011111100 011356788999999999999 999999999
Q ss_pred cCCChhhhhChhHHHHHHHHH-HHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 135 HDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 135 ~~LD~~~~~~~~~~~~v~ell-~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
++||+.. +..+++.+ .++. + |+|||+||||++.+. .|++++++.+ |+++..|+++++.
T Consensus 188 s~LD~~~------~~~i~~~ll~~~~-~-~~tviivtHd~~~~~-~~d~i~~l~~-G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 188 GYLDVLT------EKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHE-GSSYFYGTFSELQ 246 (290)
T ss_dssp TTCCHHH------HHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HSSEEEEEET-TEEEEEECHHHHH
T ss_pred ccCCHHH------HHHHHHHHHHHhh-C-CCEEEEEecCHHHHH-cCCEEEEEEC-CeEEEeCCHHHHh
Confidence 9999998 88888864 4553 3 899999999998775 4899888887 9999999887764
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=2.2e-24 Score=246.53 Aligned_cols=179 Identities=17% Similarity=0.109 Sum_probs=136.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|++++|++. ...+++++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+
T Consensus 339 ~i~~~~v~~~y~~~-~~~~l~~isl~i--~~G~~~~ivG~sGsGKSTll~~l~g~~----~p~~G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 339 RIDIDHVSFQYNDN-EAPILKDINLSI--EKGETVAFVGMSGGGKSTLINLIPRFY----DVTSGQILIDGHNIKDFLTG 411 (578)
T ss_dssp CEEEEEEEECSCSS-SCCSEEEEEEEE--CTTCEEEEECSTTSSHHHHHTTTTTSS----CCSEEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEE--CCCCEEEEECCCCChHHHHHHHHhcCC----CCCCcEEEECCEEhhhCCHH
Confidence 59999999999652 357999999999 999999999999999999999999999 89999843211
Q ss_pred ----ce-EeccccC------CCcchhh------------hhccC-------CC------cccccccchHHHHHHHHHHHH
Q 005892 80 ----GI-WMARCAG------IEPCTLI------------MDLEG-------TD------GRERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ----gi-~~~~~~~------~~~~~~v------------ld~~g-------~~------~~~r~~~~~~~qrQrv~iAlA 123 (671)
.+ ++...+. .++..+. .+..+ ++ -.+++...+++||||+++|+|
T Consensus 412 ~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 00 0111000 1111110 00001 11 012334567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++|++||||++||+.. ...+.+.+.++.+ ++|+|+||||++.+.. ||+++++.+ |+|++.|++++
T Consensus 492 l~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~-G~i~~~g~~~e 561 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLES------ESIIQEALDVLSK--DRTTLIVAHRLSTITH-ADKIVVIEN-GHIVETGTHRE 561 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHHH------HHHHHHHHHHHTT--TSEEEEECSSGGGTTT-CSEEEEEET-TEEEEEECHHH
T ss_pred HHcCCCEEEEECccccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHHc-CCEEEEEEC-CEEEEECCHHH
Confidence 99 9999999999999998 8999999988853 7899999999988764 899999888 99999999988
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
+...
T Consensus 562 l~~~ 565 (578)
T 4a82_A 562 LIAK 565 (578)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7643
No 39
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=2.2e-24 Score=247.46 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=135.3
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM----- 83 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~----- 83 (671)
.|+++|+++.|++. ..+++++++.+ .+|++++|+||||||||||+|+|+|+. +|++|++... |..+
T Consensus 354 ~i~~~~v~~~y~~~--~~~l~~isl~i--~~G~~~~ivG~sGsGKSTll~~l~g~~----~p~~G~i~~~-g~~i~~~~~ 424 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK--KPVLKDITFHI--KPGQKVALVGPTGSGKTTIVNLLMRFY----DVDRGQILVD-GIDIRKIKR 424 (598)
T ss_dssp CEEEEEEECCSSSS--SCSCCSEEEEC--CTTCEEEEECCTTSSTTHHHHHHTTSS----CCSEEEEEET-TEEGGGSCH
T ss_pred eEEEEEEEEECCCC--CccccceEEEE--cCCCEEEEECCCCCcHHHHHHHHhcCc----CCCCeEEEEC-CEEhhhCCH
Confidence 59999999999642 46899999999 999999999999999999999999999 8999974221 1111
Q ss_pred ----------ccccC------CCcchh------------hhhccCC-------Cc------ccccccchHHHHHHHHHHH
Q 005892 84 ----------ARCAG------IEPCTL------------IMDLEGT-------DG------RERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 84 ----------~~~~~------~~~~~~------------vld~~g~-------~~------~~r~~~~~~~qrQrv~iAl 122 (671)
..... .++..+ .....+. +. .+++...+++||||+++|+
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp HHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 00000 011110 0000010 00 0122345788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++|||||||++||+.. ...+.+.+.++. + |+|+|+|||+++.+.. ||+++++.+ |+|++.|+++
T Consensus 505 al~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~~l~~-G~i~~~g~~~ 574 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKT------EKSIQAAMWKLM-E-GKTSIIIAHRLNTIKN-ADLIIVLRD-GEIVEMGKHD 574 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHH------HHHHHHHHHHHH-T-TSEEEEESCCTTHHHH-CSEEEEECS-SSEEECSCHH
T ss_pred HHhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHc-C-CCEEEEEecCHHHHHc-CCEEEEEEC-CEEEEECCHH
Confidence 999 9999999999999998 999999999985 3 8999999999998764 899999988 9999999998
Q ss_pred cccC
Q 005892 200 QAHM 203 (671)
Q Consensus 200 e~~~ 203 (671)
++..
T Consensus 575 ~l~~ 578 (598)
T 3qf4_B 575 ELIQ 578 (598)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.89 E-value=1.2e-23 Score=240.81 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=136.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
+|+++|++++|++. ...+++++++.+ .+|++++|+||||||||||+|+|+|+. +|++|++...+
T Consensus 341 ~i~~~~v~~~y~~~-~~~~l~~i~l~i--~~G~~~~ivG~sGsGKSTll~~l~g~~----~p~~G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 341 EVDVKDVTFTYQGK-EKPALSHVSFSI--PQGKTVALVGRSGSGKSTIANLFTRFY----DVDSGSICLDGHDVRDYKLT 413 (582)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEE--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEECCEEhhhCCHH
Confidence 69999999999642 246899999999 999999999999999999999999999 89999843211
Q ss_pred ----ce-EeccccC------CCcchhh-------------hhccCCC-------------cccccccchHHHHHHHHHHH
Q 005892 80 ----GI-WMARCAG------IEPCTLI-------------MDLEGTD-------------GRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 80 ----gi-~~~~~~~------~~~~~~v-------------ld~~g~~-------------~~~r~~~~~~~qrQrv~iAl 122 (671)
.+ ++...+. .++..+. ++..++. -.+++...+++||||+++|+
T Consensus 414 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred HHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence 00 0000000 0111110 0111111 01123456788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~ 199 (671)
|++ ++|+|||||++||+.. ...+.+.+.++. + |+|+|+|||+++.+. .||+++++.+ |+|++.|+++
T Consensus 494 al~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~-G~i~~~g~~~ 563 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTES------ERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDE-GEIIERGRHA 563 (582)
T ss_pred HHHcCCCEEEEECccccCCHHH------HHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEEC-CEEEEECCHH
Confidence 999 9999999999999998 999999999985 3 899999999998776 5899998888 9999999988
Q ss_pred cccCC
Q 005892 200 QAHME 204 (671)
Q Consensus 200 e~~~~ 204 (671)
++...
T Consensus 564 ~l~~~ 568 (582)
T 3b5x_A 564 DLLAQ 568 (582)
T ss_pred HHHhC
Confidence 77643
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.89 E-value=4.5e-24 Score=244.84 Aligned_cols=178 Identities=18% Similarity=0.156 Sum_probs=133.7
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---------- 79 (671)
|+++|++++|++.....+++++++.+ .+|++++|+||||||||||+|+|+|+. +|++|++...+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i--~~G~~~~ivG~sGsGKSTLl~~l~g~~----~p~~G~i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSI--PSGSVTALVGPSGSGKSTVLSLLLRLY----DPASGTISLDGHDIRQLNPVW 415 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEE--CTTCEEEEECCTTSSSTHHHHHHTTSS----CCSEEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCcEEEECCEEhhhCCHHH
Confidence 99999999996421236899999999 999999999999999999999999999 89999843211
Q ss_pred ---ce-EeccccC------CCcchh---------------hhhccCC-------C------cccccccchHHHHHHHHHH
Q 005892 80 ---GI-WMARCAG------IEPCTL---------------IMDLEGT-------D------GRERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 ---gi-~~~~~~~------~~~~~~---------------vld~~g~-------~------~~~r~~~~~~~qrQrv~iA 121 (671)
.+ ++..... .++..+ +++..++ + -.+++...+++||||+++|
T Consensus 416 ~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iA 495 (595)
T 2yl4_A 416 LRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495 (595)
T ss_dssp HHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHH
T ss_pred HHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 00 0110000 011111 0111111 0 0112345678899999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+|++ ++|||||||++||+.. ...+.+.+.++.+ |+|+|+||||++.+. .||+++++.+ |+|++.|++
T Consensus 496 ral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~-G~i~~~g~~ 565 (595)
T 2yl4_A 496 RALLKNPKILLLDEATSALDAEN------EYLVQEALDRLMD--GRTVLVIAHRLSTIK-NANMVAVLDQ-GKITEYGKH 565 (595)
T ss_dssp HHHHHCCSEEEEECCCSSCCHHH------HHHHHHHHHHHHT--TSEEEEECCCHHHHH-HSSEEEEEET-TEEEEEECS
T ss_pred HHHHcCCCEEEEECcccCCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHH-cCCEEEEEEC-CEEEEECCH
Confidence 9999 9999999999999998 9999999999864 789999999998775 4899988888 999999998
Q ss_pred ccccC
Q 005892 199 PQAHM 203 (671)
Q Consensus 199 ~e~~~ 203 (671)
+++..
T Consensus 566 ~~l~~ 570 (595)
T 2yl4_A 566 EELLS 570 (595)
T ss_dssp CC---
T ss_pred HHHHh
Confidence 88764
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=3.3e-24 Score=245.48 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=136.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-------- 80 (671)
.|+++|++++|++. ...+++++++.+ .+|++++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 341 ~i~~~~v~~~y~~~-~~~~l~~isl~i--~~Ge~~~ivG~sGsGKSTll~~l~g~~----~~~~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 341 SVSFENVEFRYFEN-TDPVLSGVNFSV--KPGSLVAVLGETGSGKSTLMNLIPRLI----DPERGRVEVDELDVRTVKLK 413 (587)
T ss_dssp CEEEEEEEECSSSS-SCCSEEEEEEEE--CTTCEEEEECSSSSSHHHHHHTTTTSS----CCSEEEEEESSSBGGGBCHH
T ss_pred cEEEEEEEEEcCCC-CCcceeceEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCc----cCCCcEEEECCEEcccCCHH
Confidence 59999999999642 357999999999 999999999999999999999999999 899998432110
Q ss_pred -----e-EeccccC------CCcchh------------hhhcc-----------CCCc--ccccccchHHHHHHHHHHHH
Q 005892 81 -----I-WMARCAG------IEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 81 -----i-~~~~~~~------~~~~~~------------vld~~-----------g~~~--~~r~~~~~~~qrQrv~iAlA 123 (671)
+ ++..... .++..+ ..... |++. .+++...+++||||+++|+|
T Consensus 414 ~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARa 493 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARA 493 (587)
T ss_dssp HHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHH
T ss_pred HHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHH
Confidence 0 0110000 011100 00000 1111 12334567889999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++|||||||++||+.. ...+.+.+.++. .|+|+|+|||+++.+. .||+++++.+ |+|++.|++++
T Consensus 494 l~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~-G~i~~~g~~~e 563 (587)
T 3qf4_A 494 LVKKPKVLILDDCTSSVDPIT------EKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHE-GKVAGFGTHKE 563 (587)
T ss_dssp HHTCCSEEEEESCCTTSCHHH------HHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEET-TEEEEEECHHH
T ss_pred HHcCCCEEEEECCcccCCHHH------HHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEEC-CEEEEECCHHH
Confidence 99 9999999999999998 999999999984 3899999999998775 6899999888 99999999888
Q ss_pred ccC
Q 005892 201 AHM 203 (671)
Q Consensus 201 ~~~ 203 (671)
+.+
T Consensus 564 l~~ 566 (587)
T 3qf4_A 564 LLE 566 (587)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.89 E-value=1.2e-23 Score=240.55 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=135.6
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~------ 82 (671)
+|+++|++++|++. ...+++++++.+ .+|++++|+||||||||||+++|+|+. +|++|++... |..
T Consensus 341 ~i~~~~v~~~y~~~-~~~~l~~v~~~i--~~G~~~~ivG~sGsGKSTLl~~l~g~~----~p~~G~i~~~-g~~~~~~~~ 412 (582)
T 3b60_A 341 DLEFRNVTFTYPGR-EVPALRNINLKI--PAGKTVALVGRSGSGKSTIASLITRFY----DIDEGHILMD-GHDLREYTL 412 (582)
T ss_dssp CEEEEEEEECSSSS-SCCSEEEEEEEE--CTTCEEEEEECTTSSHHHHHHHHTTTT----CCSEEEEEET-TEETTTBCH
T ss_pred cEEEEEEEEEcCCC-CCccccceeEEE--cCCCEEEEECCCCCCHHHHHHHHhhcc----CCCCCeEEEC-CEEccccCH
Confidence 69999999999632 146899999999 999999999999999999999999999 8999984321 111
Q ss_pred ---------eccccC------CCcchhh-------------hhccCCCc-------------ccccccchHHHHHHHHHH
Q 005892 83 ---------MARCAG------IEPCTLI-------------MDLEGTDG-------------RERGEDDTAFEKQSALFA 121 (671)
Q Consensus 83 ---------~~~~~~------~~~~~~v-------------ld~~g~~~-------------~~r~~~~~~~qrQrv~iA 121 (671)
+...+. .++..+. ++..++.. .+++...+++||||+++|
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred HHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 111000 0111110 00111100 112345678899999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+|++ ++|+|||||++||+.. ...+.+.+.++.+ |+|+|+|||+++.+. .||+++++.+ |+|++.|++
T Consensus 493 ral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~-G~i~~~g~~ 562 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTES------ERAIQAALDELQK--NRTSLVIAHRLSTIE-QADEIVVVED-GIIVERGTH 562 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHH------HHHHHHHHHHHHT--TSEEEEECSCGGGTT-TCSEEEEEET-TEEEEEECH
T ss_pred HHHHhCCCEEEEECccccCCHHH------HHHHHHHHHHHhC--CCEEEEEeccHHHHH-hCCEEEEEEC-CEEEEecCH
Confidence 9999 9999999999999999 9999999999863 899999999998776 5899998888 999999998
Q ss_pred ccccC
Q 005892 199 PQAHM 203 (671)
Q Consensus 199 ~e~~~ 203 (671)
+++..
T Consensus 563 ~~l~~ 567 (582)
T 3b60_A 563 SELLA 567 (582)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=3.9e-23 Score=234.17 Aligned_cols=180 Identities=16% Similarity=0.087 Sum_probs=135.6
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE-eccc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-MARC 86 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~-~~~~ 86 (671)
+++++.|+++.|++ ..+..+++.+ .+|+++||+|||||||||||++|+|+. +|++|++.....+- +...
T Consensus 286 ~~l~~~~l~~~~~~----~~l~~~~~~i--~~Ge~~~i~G~NGsGKSTLlk~l~Gl~----~p~~G~i~~~~~i~~v~Q~ 355 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS----FRLEVEPGEI--KKGEVIGIVGPNGIGKTTFVKMLAGVE----EPTEGKIEWDLTVAYKPQY 355 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEE--ETTCEEEEECCTTSSHHHHHHHHHTSS----CCSBCCCCCCCCEEEECSS
T ss_pred eEEEEeeEEEEECC----EEEEeCcccc--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECceEEEEecC
Confidence 47999999999954 2356678888 899999999999999999999999999 89999753222111 1111
Q ss_pred cCC-------Ccch--------------hhhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChh
Q 005892 87 AGI-------EPCT--------------LIMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGRE 140 (671)
Q Consensus 87 ~~~-------~~~~--------------~vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~ 140 (671)
... +... -+++..|+... ......+++|+|||+||++++ ++|||||||++||+.
T Consensus 356 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 356 IKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp CCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred CcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 100 0000 01111233211 122456788999999999999 999999999999999
Q ss_pred hhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc-CCeEEEecCcccccC
Q 005892 141 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKPQAHM 203 (671)
Q Consensus 141 ~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~-~GkI~~~g~~~e~~~ 203 (671)
. +..++++|.++.++.|.|||+||||++++..+|++++++.+ .|++...|+|.+++.
T Consensus 436 ~------~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 436 Q------RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp H------HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred H------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9 99999999998654589999999999999889999988864 378888899877653
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=5.3e-23 Score=235.86 Aligned_cols=180 Identities=16% Similarity=0.092 Sum_probs=136.5
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCce--Eecc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI--WMAR 85 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi--~~~~ 85 (671)
.++++.|+++.|++ ..+..+++.+ .+|++++|+||||||||||||+|+|+. +|++|++.....+ ..+.
T Consensus 356 ~~l~~~~l~~~~~~----~~l~~~~~~v--~~Gei~~i~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~~~~i~~v~Q~ 425 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----FKLEVEPGEI--RKGEVIGIVGPNGIGKTTFVKMLAGVE----EPTEGKVEWDLTVAYKPQY 425 (607)
T ss_dssp EEEEECCEEEECSS----CEEEECCEEE--ETTCEEEEECCTTSSHHHHHHHHHTSS----CCSBSCCCCCCCEEEECSS
T ss_pred eEEEEeceEEEecc----eEEEeccccc--CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEEeeEEEEEecC
Confidence 47999999999954 2356677888 899999999999999999999999999 8999985322221 1111
Q ss_pred ccC------CCcch--------------hhhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChh
Q 005892 86 CAG------IEPCT--------------LIMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGRE 140 (671)
Q Consensus 86 ~~~------~~~~~--------------~vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~ 140 (671)
... .+... -+++..|+... ......+++|+|||+||++|+ ++|||||||++||+.
T Consensus 426 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505 (607)
T ss_dssp CCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred ccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence 100 00000 01122233221 223456788999999999999 999999999999999
Q ss_pred hhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc-CCeEEEecCcccccC
Q 005892 141 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKPQAHM 203 (671)
Q Consensus 141 ~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~-~GkI~~~g~~~e~~~ 203 (671)
+ +..++++|.++.++.|.|+|+||||++++..+|++++++.+ .|++...|+|.+++.
T Consensus 506 ~------~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 506 Q------RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp H------HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred H------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9 99999999998755689999999999999888999888864 477888899887664
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=1.1e-22 Score=230.26 Aligned_cols=177 Identities=13% Similarity=0.035 Sum_probs=129.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-ceEe-cc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIWM-AR 85 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-gi~~-~~ 85 (671)
+++++.|+++.|++. .+...++.+ .+|+++||+||||||||||+|+|+|+. +|++|++...+ .+.+ ..
T Consensus 268 ~~l~~~~l~~~~~~~----~l~~~~~~i--~~Gei~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~~~~i~~~~q 337 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF----QLVVDNGEA--KEGEIIGILGPNGIGKTTFARILVGEI----TADEGSVTPEKQILSYKPQ 337 (538)
T ss_dssp EEEEECCEEEEETTE----EEEECCEEE--ETTCEEEEECCTTSSHHHHHHHHTTSS----CCSBCCEESSCCCEEEECS
T ss_pred ceEEEcceEEEECCE----EEEeccceE--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCeeeEeech
Confidence 468999999999542 244457778 899999999999999999999999999 89999853211 1111 10
Q ss_pred ccCC-------Ccch---------------hhhhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccCCC
Q 005892 86 CAGI-------EPCT---------------LIMDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIG 138 (671)
Q Consensus 86 ~~~~-------~~~~---------------~vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD 138 (671)
.... ++.. .+++..++.. .......+++|+|||+||+|++ ++|||||||++||
T Consensus 338 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp SCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred hcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 0000 0000 0111112211 1123456788999999999999 9999999999999
Q ss_pred hhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc-CCeEEEecCccc
Q 005892 139 REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKPQ 200 (671)
Q Consensus 139 ~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~-~GkI~~~g~~~e 200 (671)
+.. +..++++|.++.++.|+|||+||||++++..+||+++++.+ .|.+...+++..
T Consensus 418 ~~~------~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~ 474 (538)
T 3ozx_A 418 VEE------RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVT 474 (538)
T ss_dssp HHH------HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHH
Confidence 999 99999999999766699999999999999989999988865 244555555544
No 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.8e-23 Score=235.30 Aligned_cols=178 Identities=17% Similarity=0.117 Sum_probs=130.4
Q ss_pred EeeeEEeccccccccccccccccccCCc-----cEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEec-cc
Q 005892 13 IDGDGTFNVSGIEHFIKEVKLSDCGLSY-----AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA-RC 86 (671)
Q Consensus 13 ~nlsk~y~~~~l~~vl~~v~l~~~g~~g-----eivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~-~~ 86 (671)
.++++.|.. ...++.++++.+ .+| ++++|+|||||||||||++|+|+. +|++|+.....++.+- ..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v--~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~----~p~~G~~~~~~~i~~~~q~ 421 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNV--EEGEFSDSEILVMMGENGTGKTTLIKLLAGAL----KPDEGQDIPKLNVSMKPQK 421 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEE--CCEECCTTCEEEEESCTTSSHHHHHHHHHTSS----CCSBCCCCCSCCEEEECSS
T ss_pred cceeEEecC--cccccCceEEEE--ecCccccceEEEEECCCCCcHHHHHHHHhcCC----CCCCCcCccCCcEEEeccc
Confidence 456677743 234566777776 555 889999999999999999999999 8999963222122111 00
Q ss_pred cC-C------Ccc--------------hhhhhccCCCc--ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChh
Q 005892 87 AG-I------EPC--------------TLIMDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGRE 140 (671)
Q Consensus 87 ~~-~------~~~--------------~~vld~~g~~~--~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~ 140 (671)
.. . +.. ..+++..++.. .......+++|+|||+||++|+ ++|||||||+|||+.
T Consensus 422 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~ 501 (608)
T 3j16_B 422 IAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501 (608)
T ss_dssp CCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHH
T ss_pred ccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 00 0 000 00111122221 1223456789999999999999 999999999999999
Q ss_pred hhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc-CCeEEEecCcccccCC
Q 005892 141 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKPQAHME 204 (671)
Q Consensus 141 ~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~-~GkI~~~g~~~e~~~~ 204 (671)
+ +..++++|+++.++.|.|||+||||++++..+|++++++.+ .|+++..|+|.+++..
T Consensus 502 ~------~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 502 Q------RIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp H------HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred H------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 8 99999999998755699999999999999989999998875 3899999999888753
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.86 E-value=1.1e-22 Score=251.77 Aligned_cols=179 Identities=18% Similarity=0.158 Sum_probs=138.6
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEe-----
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM----- 83 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~----- 83 (671)
.|+++|++++|+.....++++++++.+ .+|+.|||+||+|||||||+++|+|+. +|++|++... |+-+
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I--~~Ge~vaIVG~SGsGKSTL~~lL~rl~----~p~~G~I~iD-G~di~~i~~ 1148 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSV--EPGQTLALVGPSGCGKSTVVALLERFY----DTLGGEIFID-GSEIKTLNP 1148 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEE--CTTCEEEEECSTTSSTTSHHHHHTTSS----CCSSSEEEET-TEETTTBCH
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEE--CCCCEEEEECCCCChHHHHHHHHhcCc----cCCCCEEEEC-CEEhhhCCH
Confidence 599999999996543447999999999 999999999999999999999999999 8999984211 1111
Q ss_pred ----------ccccC------CCcchhhhh------------------------c-cCCCc--ccccccchHHHHHHHHH
Q 005892 84 ----------ARCAG------IEPCTLIMD------------------------L-EGTDG--RERGEDDTAFEKQSALF 120 (671)
Q Consensus 84 ----------~~~~~------~~~~~~vld------------------------~-~g~~~--~~r~~~~~~~qrQrv~i 120 (671)
...+. .+|+.+.+| . .|++. .+++...+++||||++|
T Consensus 1149 ~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai 1228 (1321)
T 4f4c_A 1149 EHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228 (1321)
T ss_dssp HHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH
T ss_pred HHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHH
Confidence 00000 111111111 0 12221 23444567889999999
Q ss_pred HHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 121 AlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
|||+. ++|||||||++||+.+ -+.|.+.|.++++ |+|+|+|+|.+..+. .||++++|++ |+|++.|+
T Consensus 1229 ARAllr~~~ILiLDEaTSaLD~~t------E~~Iq~~l~~~~~--~~TvI~IAHRLsTi~-~aD~I~Vld~-G~IvE~Gt 1298 (1321)
T 4f4c_A 1229 ARALVRNPKILLLDEATSALDTES------EKVVQEALDRARE--GRTCIVIAHRLNTVM-NADCIAVVSN-GTIIEKGT 1298 (1321)
T ss_dssp HHHHHSCCSEEEEESCCCSTTSHH------HHHHHHHHTTTSS--SSEEEEECSSSSTTT-TCSEEEEESS-SSEEEEEC
T ss_pred HHHHHhCCCEEEEeCccccCCHHH------HHHHHHHHHHHcC--CCEEEEeccCHHHHH-hCCEEEEEEC-CEEEEECC
Confidence 99999 9999999999999998 8888899988763 899999999998776 4899999988 99999999
Q ss_pred cccccCC
Q 005892 198 KPQAHME 204 (671)
Q Consensus 198 ~~e~~~~ 204 (671)
+.++++.
T Consensus 1299 h~eLl~~ 1305 (1321)
T 4f4c_A 1299 HTQLMSE 1305 (1321)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998754
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.85 E-value=3.7e-22 Score=246.53 Aligned_cols=180 Identities=15% Similarity=0.092 Sum_probs=136.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|+++.|+......+++++++.+ .+|+++||+||||||||||+++|+|+. +|++|++...+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i--~~Ge~v~ivG~sGsGKSTl~~~l~g~~----~p~~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEV--KKGQTLALVGSSGCGKSTVVQLLERFY----DPMAGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEE--CSSSEEEEECSSSTTHHHHHHHHTTSS----CCSEEEEESSSSCTTSSCHH
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEE--cCCCEEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEECCEEcccCCHH
Confidence 599999999996532346999999999 999999999999999999999999999 89999843211
Q ss_pred ------ceEecccc-----CCCcchh--------------hhhc-------cCCC------cccccccchHHHHHHHHHH
Q 005892 80 ------GIWMARCA-----GIEPCTL--------------IMDL-------EGTD------GRERGEDDTAFEKQSALFA 121 (671)
Q Consensus 80 ------gi~~~~~~-----~~~~~~~--------------vld~-------~g~~------~~~r~~~~~~~qrQrv~iA 121 (671)
++..+... ..+|..+ .... ..++ -.+++...+++||||++||
T Consensus 1104 ~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp HHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred HHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence 01111000 0001000 0000 0111 1123345678999999999
Q ss_pred HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCc
Q 005892 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (671)
Q Consensus 122 lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~ 198 (671)
+|++ ++|||||||++||+.. ...+.+.+.++. .|+|+|+||||++.+.. ||+++++.+ |+|++.|++
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~------~~~i~~~l~~~~--~~~tvi~isH~l~~i~~-~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTES------EKVVQEALDKAR--EGRTCIVIAHRLSTIQN-ADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHH------HHHHHHHHHHHS--SSSCEEEECSCTTGGGS-CSEEEEEET-BEEEEEECH
T ss_pred HHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhC--CCCEEEEEecCHHHHHc-CCEEEEEEC-CEEEEECCH
Confidence 9999 9999999999999998 899999998864 38999999999998764 999999988 999999999
Q ss_pred ccccCC
Q 005892 199 PQAHME 204 (671)
Q Consensus 199 ~e~~~~ 204 (671)
+++++.
T Consensus 1254 ~~l~~~ 1259 (1284)
T 3g5u_A 1254 QQLLAQ 1259 (1284)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 887643
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.85 E-value=5.1e-22 Score=227.67 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=121.3
Q ss_pred eEEE--------EeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeee----
Q 005892 9 STQL--------IDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ---- 76 (671)
Q Consensus 9 ~I~i--------~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q---- 76 (671)
+|++ +|++++|+.. ..++.+++ .+ .+|++++|+||||||||||||+|+|++ .|++|+..
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i--~~Ge~~~LiG~NGsGKSTLlkiL~Gll----~p~~G~~~~~~~ 153 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IV--KDGMVVGIVGPNGTGKTTAVKILAGQL----IPNLCEDNDSWD 153 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CC--CTTSEEEEECCTTSSHHHHHHHHTTSS----CCCTTTTCCCHH
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CC--CCCCEEEEECCCCChHHHHHHHHhCCC----CCCCCccccccc
Confidence 5888 7778888542 13788888 78 899999999999999999999999999 79999730
Q ss_pred ----ccCceEec-----------------cccCC-------------------CcchhhhhccCCCcc--cccccchHHH
Q 005892 77 ----TTKGIWMA-----------------RCAGI-------------------EPCTLIMDLEGTDGR--ERGEDDTAFE 114 (671)
Q Consensus 77 ----~~~gi~~~-----------------~~~~~-------------------~~~~~vld~~g~~~~--~r~~~~~~~q 114 (671)
...|..+. ..... ....-+++..|+... ......+++|
T Consensus 154 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGe 233 (607)
T 3bk7_A 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGE 233 (607)
T ss_dssp HHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHH
T ss_pred hhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHH
Confidence 00010000 00000 000011222233321 1223457889
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
+|||+||+||+ ++|||||||++||+.. +..++++|.++.+. |.|||+||||++++..+|++++++.+
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~------~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQ------RLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEECC
Confidence 99999999999 9999999999999999 99999999999765 99999999999988888888887754
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.85 E-value=7.2e-22 Score=229.50 Aligned_cols=89 Identities=8% Similarity=0.013 Sum_probs=78.3
Q ss_pred cccchHHHHHHHHHHHHHH---H--HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 107 GEDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 107 ~~~~~~~qrQrv~iAlAL~---e--vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
....+++|+|||+||+||+ + +|||||||++||+.. +..++++|+++.+. |.|||+||||++.+. .|+
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~------~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~-~~d 271 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD------NDRLIATLKSMRDL-GNTLIVVEHDEDTML-AAD 271 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGG------HHHHHHHHHHHHHT-TCEEEEECCCHHHHH-HCS
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHh-hCC
Confidence 3456788999999999999 5 999999999999999 99999999999765 999999999998765 589
Q ss_pred chhhh------hcCCeEEEecCcccccCC
Q 005892 182 EPVLR------EDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 182 ~~~ll------~~~GkI~~~g~~~e~~~~ 204 (671)
+++++ .+ |+++..|+++++..+
T Consensus 272 ~ii~l~~g~~~~~-G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 272 YLIDIGPGAGIHG-GEVVAAGTPEEVMND 299 (670)
T ss_dssp EEEEECSSSGGGC-CSEEEEECHHHHHTC
T ss_pred EEEEecccccccC-CEEEEecCHHHHhcC
Confidence 98888 56 999999998887643
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.85 E-value=7.5e-22 Score=223.64 Aligned_cols=163 Identities=15% Similarity=0.070 Sum_probs=119.3
Q ss_pred EEE-EeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeee--------ccCc
Q 005892 10 TQL-IDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ--------TTKG 80 (671)
Q Consensus 10 I~i-~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q--------~~~g 80 (671)
.++ +|++++|++. ..++.+++ .+ .+|++++|+||||||||||||+|+|+. +|++|+.. ...|
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i--~~Ge~~~LvG~NGaGKSTLlk~l~Gl~----~p~~G~~~~~~~~~~~~~~g 91 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VV--KEGMVVGIVGPNGTGKSTAVKILAGQL----IPNLCGDNDSWDGVIRAFRG 91 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CC--CTTSEEEEECCTTSSHHHHHHHHHTSS----CCCTTTTCCSHHHHHHHTTT
T ss_pred hhHhcCcEEEECCc--cccccCcC-cC--CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCCccCcchhhhHHhhCC
Confidence 455 5899999642 24788888 88 899999999999999999999999999 79988730 0001
Q ss_pred eEe-----------------ccccCC-C------------------cchhhhhccCCCcc--cccccchHHHHHHHHHHH
Q 005892 81 IWM-----------------ARCAGI-E------------------PCTLIMDLEGTDGR--ERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 81 i~~-----------------~~~~~~-~------------------~~~~vld~~g~~~~--~r~~~~~~~qrQrv~iAl 122 (671)
..+ ...... . ...-+++..|+... ......+++|+|||+||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAr 171 (538)
T 1yqt_A 92 NELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAA 171 (538)
T ss_dssp STHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHH
Confidence 000 000000 0 00011222333221 122456788999999999
Q ss_pred HHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
|++ ++|||||||++||+.. +..++++|.++.+. |+|||+||||++++..+|++++++.+
T Consensus 172 aL~~~P~lLlLDEPTs~LD~~~------~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 172 ALLRNATFYFFDEPSSYLDIRQ------RLNAARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 999 9999999999999999 99999999999764 99999999999998888999888764
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.84 E-value=4.8e-22 Score=245.50 Aligned_cols=180 Identities=15% Similarity=0.068 Sum_probs=136.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|++++|++.....+++++++.+ .+|+++||+||||||||||+++|+|+. +|++|++...+
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i--~~G~~~~ivG~sGsGKSTl~~ll~g~~----~~~~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKV--KSGQTVALVGNSGCGKSTTVQLMQRLY----DPLDGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEE--CTTCEEEEECCSSSSHHHHHHHTTTSS----CCSEEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEHHhCCHH
Confidence 599999999996532346999999999 999999999999999999999999999 89999843221
Q ss_pred ------ceEeccc-----cCCCcchhh------------hhc-------cCCC------cccccccchHHHHHHHHHHHH
Q 005892 80 ------GIWMARC-----AGIEPCTLI------------MDL-------EGTD------GRERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ------gi~~~~~-----~~~~~~~~v------------ld~-------~g~~------~~~r~~~~~~~qrQrv~iAlA 123 (671)
+...+.. +..+|+.+. ... ..++ -.+++...+++||||++||+|
T Consensus 461 ~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARa 540 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540 (1284)
T ss_dssp HHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHH
T ss_pred HHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHH
Confidence 0111100 001111110 000 0111 123344568899999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
++ ++|||||||++||+.. ...+.+.+..+. .|+|+|+|||+++.+.. ||+++++.+ |+|++.|++++
T Consensus 541 l~~~p~iliLDEpts~LD~~~------~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~-G~i~~~g~~~~ 610 (1284)
T 3g5u_A 541 LVRNPKILLLDEATSALDTES------EAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDG-GVIVEQGNHDE 610 (1284)
T ss_dssp HHHCCSEEEEESTTCSSCHHH------HHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSS-SCCCCEECHHH
T ss_pred HhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEEC-CEEEEECCHHH
Confidence 99 9999999999999988 888888888775 38999999999988765 899999988 99999999988
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
+...
T Consensus 611 l~~~ 614 (1284)
T 3g5u_A 611 LMRE 614 (1284)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7643
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.84 E-value=1.2e-21 Score=242.43 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=139.4
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---------
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~--------- 79 (671)
.|+++|++++|+......+++++++.+ .+|+.++|+||+|||||||+++|.|+. +|++|++...+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i--~~G~~vaivG~sGsGKSTll~ll~~~~----~~~~G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRV--NAGQTVALVGSSGCGKSTIISLLLRYY----DVLKGKITIDGVDVRDINLE 488 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEE--CTTCEEEEEECSSSCHHHHHHHHTTSS----CCSEEEEEETTEETTTSCHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEee--cCCcEEEEEecCCCcHHHHHHHhcccc----ccccCcccCCCccchhccHH
Confidence 599999999996543457999999999 999999999999999999999999999 89999853211
Q ss_pred ----ce-------EeccccCCCcchh----------------------hhhcc-CCC--cccccccchHHHHHHHHHHHH
Q 005892 80 ----GI-------WMARCAGIEPCTL----------------------IMDLE-GTD--GRERGEDDTAFEKQSALFALA 123 (671)
Q Consensus 80 ----gi-------~~~~~~~~~~~~~----------------------vld~~-g~~--~~~r~~~~~~~qrQrv~iAlA 123 (671)
.+ |+...+..+|+.+ +...+ |.+ -.+++...+++||||++||||
T Consensus 489 ~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp HHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred HHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 00 1100000111111 01111 111 123455568899999999999
Q ss_pred HH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCccc
Q 005892 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (671)
Q Consensus 124 L~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e 200 (671)
+. ++|||||||++||+.. .+.+.+.+.++.+ |+|+|+|||++..+. .||+++++.+ |+|++.|+.++
T Consensus 569 l~~~~~IliLDE~tSaLD~~t------e~~i~~~l~~~~~--~~T~iiiaHrls~i~-~aD~Iivl~~-G~ive~Gth~e 638 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAES------EGIVQQALDKAAK--GRTTIIIAHRLSTIR-NADLIISCKN-GQVVEVGDHRA 638 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTT------HHHHHHHHHHHHT--TSEEEEECSCTTTTT-TCSEEEEEET-TEEEEEECHHH
T ss_pred HccCCCEEEEecccccCCHHH------HHHHHHHHHHHhC--CCEEEEEcccHHHHH-hCCEEEEeeC-CeeeccCCHHH
Confidence 99 9999999999999988 8889999988863 899999999998776 4899999988 99999999998
Q ss_pred ccCC
Q 005892 201 AHME 204 (671)
Q Consensus 201 ~~~~ 204 (671)
+.+.
T Consensus 639 L~~~ 642 (1321)
T 4f4c_A 639 LMAQ 642 (1321)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8754
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.84 E-value=4.8e-22 Score=236.24 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=126.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc--e-Eec
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--I-WMA 84 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g--i-~~~ 84 (671)
++|+++|+++.|++. ...++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|++...+. + ++.
T Consensus 670 ~mL~v~nLs~~Y~g~-~~~iL~dVSl~I--~~GeivaIiGpNGSGKSTLLklLaGll----~P~sG~I~~~~~~~I~yv~ 742 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGT-SKPQITDINFQC--SLSSRIAVIGPNGAGKSTLINVLTGEL----LPTSGEVYTHENCRIAYIK 742 (986)
T ss_dssp EEEEEEEEEECCTTC-SSCSEEEEEEEE--ETTCEEEECSCCCHHHHHHHHHHTTSS----CCSEEEEEECTTCCEEEEC
T ss_pred ceEEEEeeEEEeCCC-CceeeeccEEEE--cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEEcCccceEeec
Confidence 479999999999542 246899999999 999999999999999999999999999 899997532110 0 000
Q ss_pred cc----------------------cC------------------------------------------------------
Q 005892 85 RC----------------------AG------------------------------------------------------ 88 (671)
Q Consensus 85 ~~----------------------~~------------------------------------------------------ 88 (671)
.. .+
T Consensus 743 Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~s 822 (986)
T 2iw3_A 743 QHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFL 822 (986)
T ss_dssp HHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhh
Confidence 00 00
Q ss_pred -----------------CCc-------------------------------------chhhhhccCCCc----ccccccc
Q 005892 89 -----------------IEP-------------------------------------CTLIMDLEGTDG----RERGEDD 110 (671)
Q Consensus 89 -----------------~~~-------------------------------------~~~vld~~g~~~----~~r~~~~ 110 (671)
.++ ..-+++..|+.. .......
T Consensus 823 v~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~L 902 (986)
T 2iw3_A 823 LGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGL 902 (986)
T ss_dssp EEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGC
T ss_pred hhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCcccc
Confidence 000 000111223332 1123456
Q ss_pred hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhh
Q 005892 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~ 187 (671)
+++|+||++||++++ ++|||||||++||+.. +..+.+.|.++ |.|||+||||++++..+|++++++.
T Consensus 903 SGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s------~~~L~~~L~~~----g~tVIiISHD~e~v~~l~DrVivL~ 972 (986)
T 2iw3_A 903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS------LGALSKALKEF----EGGVIIITHSAEFTKNLTEEVWAVK 972 (986)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHH------HHHHHHHHHSC----SSEEEEECSCHHHHTTTCCEEECCB
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH------HHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 788999999999999 9999999999999988 88888887664 5699999999999988899999988
Q ss_pred cCCeEEEecC
Q 005892 188 DIQKIWDSVP 197 (671)
Q Consensus 188 ~~GkI~~~g~ 197 (671)
+ |+|+..|+
T Consensus 973 ~-G~Iv~~G~ 981 (986)
T 2iw3_A 973 D-GRMTPSGH 981 (986)
T ss_dssp T-TBCCC---
T ss_pred C-CEEEEeCC
Confidence 8 99987664
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-21 Score=222.47 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=116.2
Q ss_pred eEEEEeeeEEeccc-----cccc-cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeecc----
Q 005892 9 STQLIDGDGTFNVS-----GIEH-FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT---- 78 (671)
Q Consensus 9 ~I~i~nlsk~y~~~-----~l~~-vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~---- 78 (671)
+|+|+|+.+.|... +... .+..+. .. .+|+++||+||||||||||||+|+|++ +|++|++...
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~--~~Gei~~LvGpNGaGKSTLLkiL~Gll----~P~~G~i~~~~~~~ 141 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSANSFKLHRLP-TP--RPGQVLGLVGTNGIGKSTALKILAGKQ----KPNLGRFDDPPEWQ 141 (608)
T ss_dssp CEEEEEESSSSSTTEEEECSTTSCEEECCC-CC--CTTSEEEEECCTTSSHHHHHHHHHTSS----CCCTTTTCCSSCHH
T ss_pred ceEEecCChhhcCCeEEEECCCceeecCCC-CC--CCCCEEEEECCCCChHHHHHHHHhcCC----CCCCceEecccchh
Confidence 58888876444211 0011 233333 45 789999999999999999999999999 8999974100
Q ss_pred ------CceEecc--------c-------cCCC--------------------------cchhhhhccCCCcc--ccccc
Q 005892 79 ------KGIWMAR--------C-------AGIE--------------------------PCTLIMDLEGTDGR--ERGED 109 (671)
Q Consensus 79 ------~gi~~~~--------~-------~~~~--------------------------~~~~vld~~g~~~~--~r~~~ 109 (671)
.|..+.. . ...+ ....+++..|+... .....
T Consensus 142 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 221 (608)
T 3j16_B 142 EIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEK 221 (608)
T ss_dssp HHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTT
T ss_pred hhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHH
Confidence 0000000 0 0000 00011222233321 12345
Q ss_pred chHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhh
Q 005892 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (671)
Q Consensus 110 ~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll 186 (671)
.+++|+||++||+|++ ++|||||||++||+.. +..++++++++.++ |.|||+||||++++..+|++++++
T Consensus 222 LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~------~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQ------RLNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH------HHHHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 6788999999999999 9999999999999998 99999999999865 999999999999998889998888
Q ss_pred hc
Q 005892 187 ED 188 (671)
Q Consensus 187 ~~ 188 (671)
.+
T Consensus 295 ~~ 296 (608)
T 3j16_B 295 YG 296 (608)
T ss_dssp ES
T ss_pred eC
Confidence 65
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.81 E-value=2.5e-20 Score=211.01 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=110.8
Q ss_pred eeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeec----------cCc---
Q 005892 14 DGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT----------TKG--- 80 (671)
Q Consensus 14 nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~----------~~g--- 80 (671)
+...+|+..++ -+.++..- .+|+++||+||||||||||||+|+|++ .|++|++.. ..+
T Consensus 4 ~~~~~~~~~~f--~l~~l~~~---~~Gei~gLiGpNGaGKSTLlkiL~Gl~----~p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 4 EVIHRYKVNGF--KLFGLPTP---KNNTILGVLGKNGVGKTTVLKILAGEI----IPNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CEEEESSTTSC--EEECCCCC---CTTEEEEEECCTTSSHHHHHHHHTTSS----CCCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCceecCCCce--eecCCCCC---CCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCCccccccchhhHHhhcCCeeH
Confidence 45678865322 22333322 589999999999999999999999999 899996410 000
Q ss_pred -------------eEeccccC-C-------------------CcchhhhhccCCCcc--cccccchHHHHHHHHHHHHHH
Q 005892 81 -------------IWMARCAG-I-------------------EPCTLIMDLEGTDGR--ERGEDDTAFEKQSALFALAVS 125 (671)
Q Consensus 81 -------------i~~~~~~~-~-------------------~~~~~vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~ 125 (671)
+....... . .....+++..|+... ......+++|+|||+||+|++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 00000000 0 000011122233221 122345788999999999999
Q ss_pred ---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 126 ---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
++|||||||++||+.. +..++++|+++. + |+|||+||||++++..+|++++++.+
T Consensus 155 ~~p~illlDEPts~LD~~~------~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRE------RMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYG 212 (538)
T ss_dssp SCCSEEEEESTTTTCCHHH------HHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred cCCCEEEEECCcccCCHHH------HHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecC
Confidence 9999999999999998 999999999995 4 89999999999998888888887765
No 58
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=99.80 E-value=1.4e-18 Score=191.86 Aligned_cols=335 Identities=16% Similarity=0.182 Sum_probs=219.3
Q ss_pred eEEEEee--eEEe--ccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcc------------------cCC
Q 005892 9 STQLIDG--DGTF--NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT------------------NFR 66 (671)
Q Consensus 9 ~I~i~nl--sk~y--~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl------------------~f~ 66 (671)
.|++... +..+ +...+..++...... +.+..+|+|+|+.++|||||||.|+|. .|+
T Consensus 34 piqlv~~~~~~~l~v~~eal~~iL~~~~~~--~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~ 111 (447)
T 3q5d_A 34 PVQVLIVKDDHSFELDETALNRILLSEAVR--DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS 111 (447)
T ss_dssp EEEEEEECTTSCEEECHHHHHHHHCCTTTT--TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC
T ss_pred ceeEEEECCCCCEEECHHHHHHHHhccccC--CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec
Confidence 4666554 2322 322233344442222 267789999999999999999999985 343
Q ss_pred CCCCCCCeeeccCceEecccc-------CCCcchhhhhccCCCcccccccchHHHHHHHHHHHHH--HHHHhccccccCC
Q 005892 67 EMDAFKGRSQTTKGIWMARCA-------GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV--SDIVLINMWCHDI 137 (671)
Q Consensus 67 ~m~p~sG~~q~~~gi~~~~~~-------~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL--~evLlLDEpt~~L 137 (671)
+. .|+..+|+|||+...+ +....++++|++|+...++ ..+.....||+++ ++++|.+-+ ..+
T Consensus 112 ~~---~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~~~~-----~~~~d~~ifal~~lLSs~~IyN~~-~~i 182 (447)
T 3q5d_A 112 WR---GGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQS-----TLRDSATVFALSTMISSIQVYNLS-QNV 182 (447)
T ss_dssp SC---CSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCSSHH-----HHHHHHHHHHHHHHHCSEEEEEES-SSC
T ss_pred CC---CCCCCceeEEEEecCccccccCCCCcceEEEEcCCccccccc-----chhhhHHHHHHHHHHhhHHHHhhc-ccc
Confidence 32 2444578899997532 2234578899999976653 3344444555555 488888864 233
Q ss_pred ChhhhhChhHHHHHHHHHHHhhCC----CCcEEEEEecCCCcc---------cccccchhhhhcCCeEEEecCccccc-C
Q 005892 138 GREQAANKPLLKTVFQVMMRLFSP----RKTTLMFVIRDKTRT---------PLENLEPVLREDIQKIWDSVPKPQAH-M 203 (671)
Q Consensus 138 D~~~~~~~~~~~~v~ell~~L~~~----~g~TIl~VtHDl~~~---------~~~~~~~~ll~~~GkI~~~g~~~e~~-~ 203 (671)
+.. +...+..+.++.+.+... .-..++|+.+|...- +.......+... . +..++.- -
T Consensus 183 ~~~---~l~~L~~~~e~~~~~~~~~~~~~fp~l~wvvRD~~~~l~~~~g~~t~~eyLe~~L~~~-~-----~~~~~~~~~ 253 (447)
T 3q5d_A 183 QED---DLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVS-G-----NQHEELQNV 253 (447)
T ss_dssp CHH---HHHHHHHHHHHHHHTSCCCSSCSEEEEEEEEEEECCTTTSCSBHHHHHHHHHHHHHSS-T-----TCSSSSCCH
T ss_pred cHH---HHHHHHHHHHHHHHHHHhhcccCCCceEEEEeeccccccccCCCCCHHHHHHHHHhhc-c-----CccHHHHHH
Confidence 322 344466666655533222 123889999998542 111122222211 1 1122211 1
Q ss_pred Cccccchh-cccccccccchhh--------------HHHHHHHHHHhhcccccccCCCCCCCCCCCccccCCccchhhHH
Q 005892 204 ETPLSEFF-NVEVVALSSFEEK--------------EELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEI 268 (671)
Q Consensus 204 ~~~l~~~f-~~~~~~lp~~~~~--------------~~~f~~~v~~L~~~f~~~~~~~~~~~~~~~~ip~~g~~~~~~~~ 268 (671)
...+..+| +...+.+||...+ .+.|.+++..|+..+..+..... +......++..+|..|++.+
T Consensus 254 r~~i~~~F~~~~cf~lp~P~~~v~~~~~~~~~l~~L~~~F~~~l~~l~~~i~~~~~~~~-K~~~G~~vtg~~L~~~~~~y 332 (447)
T 3q5d_A 254 RKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDI-KEINGNKITCRGLVEYFKAY 332 (447)
T ss_dssp HHHHHHHEEEEEEEEEECCCHHHHHCTTCCSBGGGSCHHHHHHHHHHHHHHHSTTTCCC-CEETTEECBHHHHHHHHHHH
T ss_pred HHHHHHhCCCceEEeccCcccchhhhhhhhcchhhccHHHHHHHHHHHHHhcCcccccc-cccCCEeecHHHHHHHHHHH
Confidence 24577788 4677777776421 36799999999999885322110 11223345556699999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHhhhHHHHHHHHhhhhhhhhHHHHHHHHh-cCC---cchHHHHHHHHHHHHhhchhhhhc
Q 005892 269 WKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQ-SGP---ISSFGKKLSSILETCLSGYDGEVL 344 (671)
Q Consensus 269 w~~I~~n~dLdlp~q~~~~a~~rc~ei~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~yd~~a~ 344 (671)
|++|.+|.-..+|++-+++|+++|.++..++++.|... +.+... ..+ .++|........++|++.|+..+.
T Consensus 333 v~ain~~~~P~~~s~~~~~a~~~~~~a~~~A~~~Y~~~-----m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~ 407 (447)
T 3q5d_A 333 IKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKK-----MEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKK 407 (447)
T ss_dssp HHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998653 333332 122 346999999999999999999997
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHH
Q 005892 345 YFDEGVRSAKRKQLEDKLLQLVQPA 369 (671)
Q Consensus 345 ~y~~~v~~~kr~~L~~~~~~~~~~~ 369 (671)
++.++++++.+++|+++|...+...
T Consensus 408 ~g~~~~~~~~~~~L~~~l~~~~~~~ 432 (447)
T 3q5d_A 408 MGGEEFSRRYLQQLESEIDELYIQY 432 (447)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999887765443
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.80 E-value=5.7e-20 Score=218.53 Aligned_cols=174 Identities=13% Similarity=0.016 Sum_probs=127.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEecccc-
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA- 87 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~- 87 (671)
.|...|+++.|++ ..++.+++|.+ .+|++++|+||||||||||||+|+|-.... .+..+.. +..++....
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I--~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g-~~~~~~~---~~~~v~q~~~ 505 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRL--KRARRYGICGPNGCGKSTLMRAIANGQVDG-FPTQEEC---RTVYVEHDID 505 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEE--ETTCEEEEECSTTSSHHHHHHHHHHTCSTT-CCCTTTS---CEEETTCCCC
T ss_pred eeEEeeEEEEECC---EEeEecceEEE--cCCCEEEEECCCCCCHHHHHHHHhCCCcCC-Cccccce---eEEEEccccc
Confidence 4667799999964 36899999999 999999999999999999999999522100 0111110 001111100
Q ss_pred C-------CCc-----------chhhhhccCCCc---ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhh
Q 005892 88 G-------IEP-----------CTLIMDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAA 143 (671)
Q Consensus 88 ~-------~~~-----------~~~vld~~g~~~---~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~ 143 (671)
. .++ ...+++..|+.. .......+++||||++||++++ ++|||||||++||+..
T Consensus 506 ~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~-- 583 (986)
T 2iw3_A 506 GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN-- 583 (986)
T ss_dssp CCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHH--
T ss_pred ccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH--
Confidence 0 000 111234445531 1233456889999999999999 9999999999999998
Q ss_pred ChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE-EecCccccc
Q 005892 144 NKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKPQAH 202 (671)
Q Consensus 144 ~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~-~~g~~~e~~ 202 (671)
+..+.++|.+ .|.|+|+||||++++...|++++++.+ |+++ ..|++.++.
T Consensus 584 ----~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~-G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 584 ----VAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEG-LKLRKYKGNFTEFV 634 (986)
T ss_dssp ----HHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEET-TEEEEEESCHHHHH
T ss_pred ----HHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEEC-CeeecCCCCHHHHH
Confidence 9999999987 389999999999999888999999888 9996 578877654
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.79 E-value=2.1e-20 Score=217.24 Aligned_cols=88 Identities=9% Similarity=0.054 Sum_probs=77.9
Q ss_pred cccchHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 107 GEDDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 107 ~~~~~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
....+++|+|||+||+||+ ++|||||||++||+.. ...+++++.++.++ |.|||+||||++.+. .|
T Consensus 541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~------~~~i~~~l~~l~~~-g~tvi~vtHd~~~~~-~~ 612 (670)
T 3ux8_A 541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD------IARLLDVLHRLVDN-GDTVLVIEHNLDVIK-TA 612 (670)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT-TC
T ss_pred chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-hC
Confidence 3456889999999999998 2999999999999999 99999999999865 999999999998775 58
Q ss_pred cchhhh------hcCCeEEEecCcccccC
Q 005892 181 LEPVLR------EDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 181 ~~~~ll------~~~GkI~~~g~~~e~~~ 203 (671)
|++++| .+ |+|+..|+++++..
T Consensus 613 d~i~~l~~~~g~~~-G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 613 DYIIDLGPEGGDRG-GQIVAVGTPEEVAE 640 (670)
T ss_dssp SEEEEEESSSGGGC-CEEEEEECHHHHHT
T ss_pred CEEEEecCCcCCCC-CEEEEecCHHHHHh
Confidence 998888 56 99999999988753
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.73 E-value=9.7e-20 Score=175.82 Aligned_cols=137 Identities=12% Similarity=0.052 Sum_probs=90.0
Q ss_pred ccccccccCCccEEEEEcCCCCChHHHHH------------HHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhh
Q 005892 30 EVKLSDCGLSYAVVSIMGPQSSGKSTLLN------------HLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMD 97 (671)
Q Consensus 30 ~v~l~~~g~~geivaIlGpNGSGKSTLLn------------~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld 97 (671)
++++.+ .+|++++|+||||||||||+| .+.|+. .++.|.....+.. .... .......-
T Consensus 1 ~vsl~i--~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~----~~~~~~~~~~~~~-~~~~---~~~~~~~~ 70 (171)
T 4gp7_A 1 SMKLTI--PELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLM----SDDENDQTVTGAA-FDVL---HYIVSKRL 70 (171)
T ss_dssp CEEEEE--ESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHH----CSSTTCGGGHHHH-HHHH---HHHHHHHH
T ss_pred CccccC--CCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHh----cCcccchhhHHHH-HHHH---HHHHHHHH
Confidence 467788 899999999999999999999 677777 3555532111000 0000 00000000
Q ss_pred ccCCCcc-cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhC----------hhHHHHHHHHHHHhhCCCC
Q 005892 98 LEGTDGR-ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAAN----------KPLLKTVFQVMMRLFSPRK 163 (671)
Q Consensus 98 ~~g~~~~-~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~----------~~~~~~v~ell~~L~~~~g 163 (671)
..|.... ........+|+|++++|++++ ++|++|||+++||+....- ......+.+.+.++.++ |
T Consensus 71 ~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g 149 (171)
T 4gp7_A 71 QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-G 149 (171)
T ss_dssp HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-T
T ss_pred hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-C
Confidence 0111111 111234778999999999999 9999999999999883100 00257788888888766 9
Q ss_pred cEEEEEecCCCccc
Q 005892 164 TTLMFVIRDKTRTP 177 (671)
Q Consensus 164 ~TIl~VtHDl~~~~ 177 (671)
.|+|+||||++++.
T Consensus 150 ~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 150 FRYVYILNSPEEVE 163 (171)
T ss_dssp CSEEEEECSHHHHH
T ss_pred CcEEEEeCCHHHhh
Confidence 99999999998775
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-19 Score=200.97 Aligned_cols=167 Identities=12% Similarity=0.144 Sum_probs=114.0
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC-e-eeccC----ce
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG-R-SQTTK----GI 81 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG-~-~q~~~----gi 81 (671)
+||++.|+++.|+ ++++.+ .+|++++|+||||||||||+|+|+|+. .|++| + +...+ ++
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i--~~Ge~v~IvGpnGsGKSTLlr~L~Gl~----~p~~G~~pI~vdg~~~~~i 181 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSN--FEGPRVVIVGGSQTGKTSLSRTLCSYA----LKFNAYQPLYINLDPQQPI 181 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHS--SSCCCEEEEESTTSSHHHHHHHHHHTT----HHHHCCCCEEEECCTTSCS
T ss_pred chhhhhhhhehhh---------cCceEe--CCCCEEEEECCCCCCHHHHHHHHhCcc----cccCCceeEEEcCCccCCe
Confidence 4567777777773 577888 899999999999999999999999998 78888 6 32111 00
Q ss_pred -Eecccc----------CCCcc---------------hhhhhccCCCcccccccchHHHHHHHHHHHH--HH---HH---
Q 005892 82 -WMARCA----------GIEPC---------------TLIMDLEGTDGRERGEDDTAFEKQSALFALA--VS---DI--- 127 (671)
Q Consensus 82 -~~~~~~----------~~~~~---------------~~vld~~g~~~~~r~~~~~~~qrQrv~iAlA--L~---ev--- 127 (671)
.+.+.. ..++. .-++...|+.........+++|+||+++|++ ++ ++
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~s 261 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRS 261 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHS
T ss_pred eeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcc
Confidence 000000 00011 0011111222211133456789999999999 99 99
Q ss_pred -Hhccc-cccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC------cccccccc-----hhhhhcCCeEEE
Q 005892 128 -VLINM-WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT------RTPLENLE-----PVLREDIQKIWD 194 (671)
Q Consensus 128 -LlLDE-pt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~------~~~~~~~~-----~~ll~~~GkI~~ 194 (671)
||||| |+++||+. ...+.+++.+ .+.|+|+|+||+. ++..+|++ ++++...|+|+
T Consensus 262 GLlLDEpPts~LD~~-------~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv- 329 (460)
T 2npi_A 262 GCIVDTPSISQLDEN-------LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS- 329 (460)
T ss_dssp CEEEECCCGGGSCSS-------CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-
T ss_pred eEEEeCCcccccChh-------HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-
Confidence 99999 99999985 3445555544 3778999999998 66677888 78777239999
Q ss_pred ecCcccc
Q 005892 195 SVPKPQA 201 (671)
Q Consensus 195 ~g~~~e~ 201 (671)
.|++.++
T Consensus 330 ~g~~~~~ 336 (460)
T 2npi_A 330 AVDDVYK 336 (460)
T ss_dssp CCCHHHH
T ss_pred ECCHHHH
Confidence 8887654
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.72 E-value=1.2e-18 Score=205.11 Aligned_cols=89 Identities=8% Similarity=0.018 Sum_probs=77.9
Q ss_pred ccchHHHHHHHHHHHHHHH------HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 108 EDDTAFEKQSALFALAVSD------IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~e------vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
...+++|+|||.||++|+. +|||||||+|||+.. ...++++|.++.+. |.|||+||||++++ ..||
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~------~~~l~~lL~~L~~~-G~tVIvisHdl~~i-~~aD 800 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD------VERLQRQLVKLVDA-GNTVIAVEHKMQVV-AASD 800 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCC
Confidence 4567889999999999993 999999999999998 99999999999765 99999999999988 5789
Q ss_pred chhhhh-----cCCeEEEecCcccccCC
Q 005892 182 EPVLRE-----DIQKIWDSVPKPQAHME 204 (671)
Q Consensus 182 ~~~ll~-----~~GkI~~~g~~~e~~~~ 204 (671)
++++|. +.|+|+..|++++++..
T Consensus 801 rii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 801 WVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 988883 33999999999887654
No 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.71 E-value=1.3e-18 Score=206.42 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=78.4
Q ss_pred ccchHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 108 EDDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
...+++|+|||.||++|+ ++|||||||+|||+.. ...++++|.++.+. |.|||+|+||++.+.. ||
T Consensus 804 ~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~------~~~L~~lL~~L~~~-G~TVIvI~HdL~~i~~-AD 875 (916)
T 3pih_A 804 TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFED------VRKLVEVLHRLVDR-GNTVIVIEHNLDVIKN-AD 875 (916)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHTT-CS
T ss_pred cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHh-CC
Confidence 456788999999999997 3999999999999999 99999999999765 9999999999988764 89
Q ss_pred chhhh------hcCCeEEEecCcccccCC
Q 005892 182 EPVLR------EDIQKIWDSVPKPQAHME 204 (671)
Q Consensus 182 ~~~ll------~~~GkI~~~g~~~e~~~~ 204 (671)
++++| .+ |+|++.|+|+++..+
T Consensus 876 rIivLgp~gg~~~-G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 876 HIIDLGPEGGKEG-GYIVATGTPEEIAKN 903 (916)
T ss_dssp EEEEEESSSGGGC-CEEEEEESHHHHHSC
T ss_pred EEEEecCCCCCCC-CEEEEEcCHHHHHhC
Confidence 98888 55 999999999988754
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.69 E-value=1.1e-17 Score=197.82 Aligned_cols=89 Identities=9% Similarity=0.022 Sum_probs=77.7
Q ss_pred ccchHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 108 EDDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
...+++|+|||.||++|+ ++|||||||+|||+.. +..++++|.++.+. |.|||+||||++++. .||
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~------~~~l~~lL~~L~~~-G~TVIvisHdl~~i~-~aD 915 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD------IARLLDVLHRLVDN-GDTVLVIEHNLDVIK-TAD 915 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT-TCS
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH-hCC
Confidence 456788999999999999 5999999999999998 99999999999765 999999999998774 688
Q ss_pred chhhhh-----cCCeEEEecCcccccCC
Q 005892 182 EPVLRE-----DIQKIWDSVPKPQAHME 204 (671)
Q Consensus 182 ~~~ll~-----~~GkI~~~g~~~e~~~~ 204 (671)
++++|. +.|+|+..|++.++...
T Consensus 916 rIivL~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 916 YIIDLGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp EEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred EEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence 988883 34999999998887643
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.68 E-value=2e-17 Score=196.18 Aligned_cols=88 Identities=7% Similarity=0.008 Sum_probs=77.0
Q ss_pred ccchHHHHHHHHHHHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 108 EDDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
...+++|+|||.||++|+ ++|||||||+|||+.. ...++++|.++.+. |.|||+||||++++. .|+
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~------~~~l~~lL~~L~~~-G~TVIvisHdl~~i~-~aD 933 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD------IRKLLNVINGLVDK-GNTVIVIEHNLDVIK-TSD 933 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT-TCS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH-hCC
Confidence 345788999999999999 5999999999999998 99999999999765 999999999998874 689
Q ss_pred chhhhh-----cCCeEEEecCcccccC
Q 005892 182 EPVLRE-----DIQKIWDSVPKPQAHM 203 (671)
Q Consensus 182 ~~~ll~-----~~GkI~~~g~~~e~~~ 203 (671)
++++|. +.|+|+..|+++++..
T Consensus 934 rIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 934 WIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 988883 3499999999887754
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.63 E-value=1.3e-16 Score=174.04 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchh
Q 005892 110 DTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (671)
Q Consensus 110 ~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ 184 (671)
.+++|+||+++|++++ ++|||||||++||+.. +..+.+.|.++. + |.|||+||||++.+. .|++++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~------~~~l~~~L~~l~-~-~~~vi~itH~~~~~~-~~d~i~ 366 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA------AIAVAEQLSRLA-D-TRQVLVVTHLAQIAA-RAHHHY 366 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHH------HHHHHHHHHHHT-T-TSEEEEECSCHHHHT-TCSEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHh-C-CCEEEEEeCcHHHHh-hcCeEE
Confidence 4889999999999998 5899999999999999 999999999996 3 899999999997664 688888
Q ss_pred hh----hcCCeEEEec
Q 005892 185 LR----EDIQKIWDSV 196 (671)
Q Consensus 185 ll----~~~GkI~~~g 196 (671)
++ .+ |+++...
T Consensus 367 ~l~k~~~~-G~~~~~~ 381 (415)
T 4aby_A 367 KVEKQVED-GRTVSHV 381 (415)
T ss_dssp EEEEEEET-TEEEEEE
T ss_pred EEEEeccC-CceEEEE
Confidence 88 66 8887654
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.60 E-value=2.6e-17 Score=164.41 Aligned_cols=127 Identities=16% Similarity=0.120 Sum_probs=79.2
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceE-----eccccC------CCcc-h
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-----MARCAG------IEPC-T 93 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~-----~~~~~~------~~~~-~ 93 (671)
.++.++ .+|++++|+|||||||||||++|+|+. |++|++... .+. .....+ .++. .
T Consensus 14 ~~l~~i------~~Ge~~~liG~nGsGKSTLl~~l~Gl~-----p~~G~I~~~-~~~~~~~~~~~~ig~v~q~~~enl~~ 81 (208)
T 3b85_A 14 HYVDAI------DTNTIVFGLGPAGSGKTYLAMAKAVQA-----LQSKQVSRI-ILTRPAVEAGEKLGFLPGTLNEKIDP 81 (208)
T ss_dssp HHHHHH------HHCSEEEEECCTTSSTTHHHHHHHHHH-----HHTTSCSEE-EEEECSCCTTCCCCSSCC------CT
T ss_pred HHHHhc------cCCCEEEEECCCCCCHHHHHHHHhcCC-----CcCCeeeeE-EecCCchhhhcceEEecCCHHHHHHH
Confidence 466664 467799999999999999999999993 788875210 000 000011 1111 1
Q ss_pred hh---hh-ccCCCcccccccc---hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCC
Q 005892 94 LI---MD-LEGTDGRERGEDD---TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK 163 (671)
Q Consensus 94 ~v---ld-~~g~~~~~r~~~~---~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g 163 (671)
+. .+ ..+.....+.... ..+|+||+++|+|++ ++|||||||++ . +..+.++|.++ ++ |
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~------~~~l~~~l~~l-~~-g 149 (208)
T 3b85_A 82 YLRPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----T------PAQMKMFLTRL-GF-G 149 (208)
T ss_dssp TTHHHHHHHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----C------HHHHHHHHTTB-CT-T
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----c------HHHHHHHHHHh-cC-C
Confidence 10 00 0110000000000 116999999999999 99999999998 4 88899999998 54 8
Q ss_pred cEEEEEecCCCccc
Q 005892 164 TTLMFVIRDKTRTP 177 (671)
Q Consensus 164 ~TIl~VtHDl~~~~ 177 (671)
+||| ||||++.+.
T Consensus 150 ~tii-vtHd~~~~~ 162 (208)
T 3b85_A 150 SKMV-VTGDITQVD 162 (208)
T ss_dssp CEEE-EEEC-----
T ss_pred CEEE-EECCHHHHh
Confidence 9999 999998765
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.58 E-value=6.2e-16 Score=167.11 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=67.7
Q ss_pred cchHHHHHHHHHHHHHH---------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc
Q 005892 109 DDTAFEKQSALFALAVS---------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~---------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~ 179 (671)
..+++|+||++||+|++ ++|||||||++||+.. +..+++++.++.+. |.|||+||||++.+ ..
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~------~~~~~~~l~~l~~~-g~tvi~itH~~~~~-~~ 350 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTEN------KEKIASVLKELERL-NKVIVFITHDREFS-EA 350 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHH------HHHHHHHHHGGGGS-SSEEEEEESCHHHH-TT
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecchHHH-Hh
Confidence 46788999999999998 6899999999999999 99999999999765 99999999999874 46
Q ss_pred ccchhhhhcCCeEEE
Q 005892 180 NLEPVLREDIQKIWD 194 (671)
Q Consensus 180 ~~~~~ll~~~GkI~~ 194 (671)
|++++++.+ |+|+.
T Consensus 351 ~d~~~~l~~-G~i~~ 364 (365)
T 3qf7_A 351 FDRKLRITG-GVVVN 364 (365)
T ss_dssp CSCEEEEET-TEEC-
T ss_pred CCEEEEEEC-CEEEe
Confidence 888888887 99864
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.55 E-value=1.8e-15 Score=165.67 Aligned_cols=145 Identities=18% Similarity=0.123 Sum_probs=100.9
Q ss_pred ccccccccccccCCcc--------------------EEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC------
Q 005892 26 HFIKEVKLSDCGLSYA--------------------VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (671)
Q Consensus 26 ~vl~~v~l~~~g~~ge--------------------ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~------ 79 (671)
.++.++++.+ .+|+ ++||+||||||||||+|+|+|+. +|++|.+...+
T Consensus 37 ~~l~~is~~i--~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~----~p~~GsI~~~g~~~t~~ 110 (413)
T 1tq4_A 37 EILNLIELRM--RAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG----NEEEGAAKTGVVEVTME 110 (413)
T ss_dssp HHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC----TTSTTSCCCCC----CC
T ss_pred HHhhhcccee--cCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC----CccCceEEECCeeccee
Confidence 5788899998 8999 99999999999999999999999 78888743211
Q ss_pred ceEeccccCCCcchhhhhccCCCcc----------------cccccchHH--HHHHHHHHHHHH-------------HHH
Q 005892 80 GIWMARCAGIEPCTLIMDLEGTDGR----------------ERGEDDTAF--EKQSALFALAVS-------------DIV 128 (671)
Q Consensus 80 gi~~~~~~~~~~~~~vld~~g~~~~----------------~r~~~~~~~--qrQrv~iAlAL~-------------evL 128 (671)
++.+.. . ..+...+.|..|+... ...-..+.+ |+|++.+|++++ +++
T Consensus 111 ~~v~q~-~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 111 RHPYKH-P-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp CEEEEC-S-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred EEeccc-c-ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 222221 1 1112223333332210 000001223 999999999997 489
Q ss_pred hccccccCCChhhhhChhHHHHHHHHHHHhh-----CC---CCcEEEEEecCCCc--ccccccchh
Q 005892 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLF-----SP---RKTTLMFVIRDKTR--TPLENLEPV 184 (671)
Q Consensus 129 lLDEpt~~LD~~~~~~~~~~~~v~ell~~L~-----~~---~g~TIl~VtHDl~~--~~~~~~~~~ 184 (671)
++||||++||+.. +..+++.++++. +. ...++++++|++.. +..+++.+.
T Consensus 189 lLDEPtsgLD~~~------~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 189 ITNEADGEPQTFD------KEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCCTTCC------HHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ccCcccccCCHHH------HHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999999999998 888888888874 11 24678899999976 666666553
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.52 E-value=3e-15 Score=145.84 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=81.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCC-CCCeee-cc--------CceEeccccCCCcchhhhhccCCC----ccccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQ-TT--------KGIWMARCAGIEPCTLIMDLEGTD----GRERG 107 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-~sG~~q-~~--------~gi~~~~~~~~~~~~~vld~~g~~----~~~r~ 107 (671)
.++|+||||||||||+++|+|++ .. ..|... .. -+.......+..+. +...+.. .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l----~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 74 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL----GKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI---FSSKFFTSKKLVGSYG 74 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----GGGEEEEEEEEEC------CCEEEEEETTCCEEE---EEETTCCCSSEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCcCCCEEhhhhccccccceeEEEeecCcHHHHH---HHhhcCCccccccccc
Confidence 58999999999999999999987 21 123210 00 01111000000011 0000111 01122
Q ss_pred ccchHHHHHHHHHHHH-----HH---HHHhccc--cccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEec---CCC
Q 005892 108 EDDTAFEKQSALFALA-----VS---DIVLINM--WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIR---DKT 174 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlA-----L~---evLlLDE--pt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtH---Dl~ 174 (671)
...+++|+||+.+|++ ++ +++++|| |++++|+.. ...+.+++.+ .+.|+|+++| |+.
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~------~~~l~~~l~~----~~~~~i~~~H~~h~~~ 144 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF------RDLVRQIMHD----PNVNVVATIPIRDVHP 144 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHH------HHHHHHHHTC----TTSEEEEECCSSCCSH
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHH------HHHHHHHHhc----CCCeEEEEEccCCCch
Confidence 3467899999999996 77 8999999 999999887 7777777654 4778999986 555
Q ss_pred cccccccchhhhhcCCeEEE
Q 005892 175 RTPLENLEPVLREDIQKIWD 194 (671)
Q Consensus 175 ~~~~~~~~~~ll~~~GkI~~ 194 (671)
++..++++ .+ |+|+.
T Consensus 145 ~~~~i~~r----~~-~~i~~ 159 (178)
T 1ye8_A 145 LVKEIRRL----PG-AVLIE 159 (178)
T ss_dssp HHHHHHTC----TT-CEEEE
T ss_pred HHHHHHhc----CC-cEEEE
Confidence 55544443 33 78875
No 72
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.52 E-value=2.5e-15 Score=151.48 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=84.0
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHh--cccCCCCCCCCCeeeccCceEeccc
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLF--GTNFREMDAFKGRSQTTKGIWMARC 86 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~--Gl~f~~m~p~sG~~q~~~gi~~~~~ 86 (671)
++++.+++..|.. ++.++.+ ++ .+|++++|+||||||||||+++|+ |+. .+..|. +++...
T Consensus 6 ~~~~~~i~tg~~~--lD~~l~G---gi--~~G~~~~l~GpnGsGKSTLl~~i~~~~~~----~~~~~~------~~~~~~ 68 (251)
T 2ehv_A 6 YQPVRRVKSGIPG--FDELIEG---GF--PEGTTVLLTGGTGTGKTTFAAQFIYKGAE----EYGEPG------VFVTLE 68 (251)
T ss_dssp --CCCEECCSCTT--TGGGTTT---SE--ETTCEEEEECCTTSSHHHHHHHHHHHHHH----HHCCCE------EEEESS
T ss_pred ccccceeecCCHh--HHHHhcC---CC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHH----hCCCeE------EEEEcc
Confidence 4666676666632 3444332 66 789999999999999999999999 763 243342 222211
Q ss_pred c------------CCCcc-------hhhhhccCCCccc---c---c-ccchHHHHHHHHHHHH-HH--HHHhccccccCC
Q 005892 87 A------------GIEPC-------TLIMDLEGTDGRE---R---G-EDDTAFEKQSALFALA-VS--DIVLINMWCHDI 137 (671)
Q Consensus 87 ~------------~~~~~-------~~vld~~g~~~~~---r---~-~~~~~~qrQrv~iAlA-L~--evLlLDEpt~~L 137 (671)
. +.... ..+.+........ . . ......+......... .. ++|++|||++++
T Consensus 69 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~l 148 (251)
T 2ehv_A 69 ERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIA 148 (251)
T ss_dssp SCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHH
T ss_pred CCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHH
Confidence 0 00000 0000100000000 0 0 0000011111111111 11 899999999998
Q ss_pred ChhhhhCh-hHHHHHHHHHHHhhCCCCcEEEEEecCCCcc---------cccc-cchhhhh
Q 005892 138 GREQAANK-PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT---------PLEN-LEPVLRE 187 (671)
Q Consensus 138 D~~~~~~~-~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~---------~~~~-~~~~ll~ 187 (671)
|... ++ ..+..+.+++..+.+. |+|||+|||++..+ ...| |+++++.
T Consensus 149 d~~~--d~~~~~~~l~~l~~~l~~~-g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 149 LRLE--EERKIREVLLKLNTILLEM-GVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHSS--SGGGHHHHHHHHHHHHHHH-CCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHC-CCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 7311 22 2255588888888654 99999999999876 4566 7777774
No 73
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.51 E-value=1.4e-14 Score=172.82 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=107.0
Q ss_pred eEEEEeeeEEeccc--cccccccccccccccCCccEEEEEcCCCCChHHHHHHH--------hcccCCCCCCCCCeeecc
Q 005892 9 STQLIDGDGTFNVS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHL--------FGTNFREMDAFKGRSQTT 78 (671)
Q Consensus 9 ~I~i~nlsk~y~~~--~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L--------~Gl~f~~m~p~sG~~q~~ 78 (671)
.|.++++..-+-.. +...+..+++++. .+|++++|+||||||||||||+| .|.. -|..+.
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~--~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~----vpa~~~---- 700 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEK--DKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF----VPCESA---- 700 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEET--TTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC----BSEEEE----
T ss_pred ceEeecCccchhhhcCCceeecccceeec--CCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc----cccccc----
Confidence 35555544333111 1235778899998 88999999999999999999999 4433 232221
Q ss_pred CceEeccccCCCcchhhhhccCCCcccccccchHHHHHHHHHHHHH--H---HHHhccccccCCChhhhhChhHHHHH-H
Q 005892 79 KGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV--S---DIVLINMWCHDIGREQAANKPLLKTV-F 152 (671)
Q Consensus 79 ~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL--~---evLlLDEpt~~LD~~~~~~~~~~~~v-~ 152 (671)
.+.. .+. ++...|...... ...+.|+.++..+|.++ + ++||||||++|+|+.. ...+ .
T Consensus 701 ---~~~~---~d~---i~~~ig~~d~l~-~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~------~~~i~~ 764 (934)
T 3thx_A 701 ---EVSI---VDC---ILARVGAGDSQL-KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYD------GFGLAW 764 (934)
T ss_dssp ---EEEC---CSE---EEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHH------HHHHHH
T ss_pred ---cchH---HHH---HHHhcCchhhHH-HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHH------HHHHHH
Confidence 1100 000 111222221111 12356666666666666 3 8999999999999987 6666 5
Q ss_pred HHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 153 QVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 153 ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
.++..+.++.|+++||+||+++.+. +++++..+.+ |++...+++.++
T Consensus 765 ~il~~l~~~~g~~vl~aTH~~el~~-lad~~~~v~n-g~v~~~~~~~~l 811 (934)
T 3thx_A 765 AISEYIATKIGAFCMFATHFHELTA-LANQIPTVNN-LHVTALTTEETL 811 (934)
T ss_dssp HHHHHHHHTTCCEEEEEESCGGGGG-GGGTCTTEEE-EEEEEEEETTEE
T ss_pred HHHHHHHhcCCCEEEEEcCcHHHHH-HhcccceeEe-eEEEEEecCCcE
Confidence 6666666545999999999987664 6888888888 999988876654
No 74
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.50 E-value=6.2e-15 Score=177.67 Aligned_cols=171 Identities=17% Similarity=0.073 Sum_probs=102.1
Q ss_pred ceEEEEe-----eeEEeccccccccccccccccccCC-------ccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee
Q 005892 8 CSTQLID-----GDGTFNVSGIEHFIKEVKLSDCGLS-------YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (671)
Q Consensus 8 ~~I~i~n-----lsk~y~~~~l~~vl~~v~l~~~g~~-------geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (671)
++|+++| +++.|.+. ..++.+++++. .+ |++++|+||||||||||||+| |+.. .| ...|-.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~--~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-~~-aqiG~~ 821 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGC--EEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-VM-AQMGCY 821 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESC--CCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-HH-HTTTCC
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeecc--ccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-HH-hheeEE
Confidence 4699999 99998322 36888899887 55 899999999999999999999 9871 11 122310
Q ss_pred eccCceEeccccCCCcchhhhhccCCCccc-ccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHH-HH
Q 005892 76 QTTKGIWMARCAGIEPCTLIMDLEGTDGRE-RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLL-KT 150 (671)
Q Consensus 76 q~~~gi~~~~~~~~~~~~~vld~~g~~~~~-r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~-~~ 150 (671)
....... ....+.+. ...|..... .+......+.++++++++++ ++||||||++|+|+.. . ..
T Consensus 822 Vpq~~~~---l~v~d~I~---~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~d------g~~~ 889 (1022)
T 2o8b_B 822 VPAEVCR---LTPIDRVF---TRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFD------GTAI 889 (1022)
T ss_dssp EESSEEE---ECCCSBEE---EECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHH------HHHH
T ss_pred eccCcCC---CCHHHHHH---HHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHH------HHHH
Confidence 0000000 01111111 112222111 11111223445588888887 8999999999999875 3 34
Q ss_pred HHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEE--EecCcc
Q 005892 151 VFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW--DSVPKP 199 (671)
Q Consensus 151 v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~--~~g~~~ 199 (671)
++.++..+.+..|.++||+||+++.+...+++..++ + |++. ..|++.
T Consensus 890 ~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~-g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 890 ANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-L-GHMACMVENECE 938 (1022)
T ss_dssp HHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-E-EEEEEC------
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-c-CeEEEEEecCcc
Confidence 677788886555899999999999888777777664 5 7887 445443
No 75
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.50 E-value=1.3e-10 Score=132.43 Aligned_cols=334 Identities=16% Similarity=0.186 Sum_probs=200.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe-eeccCceEeccc---cCCCcchhhhhccCCCcccccccchHH
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR-SQTTKGIWMARC---AGIEPCTLIMDLEGTDGRERGEDDTAF 113 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~-~q~~~gi~~~~~---~~~~~~~~vld~~g~~~~~r~~~~~~~ 113 (671)
.+.-+|+|+|+.|+|||||+|.|+|..... +..|+ ..++.|+|+... ........++|++|+....++......
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 344589999999999999999999976211 22232 235678876421 112345678899999876553221111
Q ss_pred HHHHHHHHHHHHHHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCC------------------CcEEEEEecCCCc
Q 005892 114 EKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR------------------KTTLMFVIRDKTR 175 (671)
Q Consensus 114 qrQrv~iAlAL~evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~------------------g~TIl~VtHDl~~ 175 (671)
...+++..++.++|+|- +.+++... ......+.+..+.+..+. -..++|+.+|...
T Consensus 114 --~~fala~llss~lv~n~-~~~i~~~d---l~~l~~v~e~~~~l~~k~~~~~~~~~~~~~~~~~~~fP~~~wvvRD~~l 187 (592)
T 1f5n_A 114 --WIFALAVLLSSTFVYNS-IGTINQQA---MDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSL 187 (592)
T ss_dssp --HHHHHHHHHCSEEEEEE-ESCSSHHH---HHTTHHHHTHHHHCBSCCC-------CCGGGGHHHHCCEEEEEEETCCC
T ss_pred --HHHHHHHHhcCeEEEEC-CCCccHHH---HHHHHHHHHHhhhhhcccCcccccccccchhhhhccCCceEEEEecccc
Confidence 12234444558888883 34454432 222344444444443210 1478999999964
Q ss_pred ccccc-----cchhhhhcCCeEEEecCcccccC----Cccccchhc-ccccccccch--------------hhHHHHHHH
Q 005892 176 TPLEN-----LEPVLREDIQKIWDSVPKPQAHM----ETPLSEFFN-VEVVALSSFE--------------EKEELFKEQ 231 (671)
Q Consensus 176 ~~~~~-----~~~~ll~~~GkI~~~g~~~e~~~----~~~l~~~f~-~~~~~lp~~~--------------~~~~~f~~~ 231 (671)
-...- .+.++-.... .. .|..+++.. ...+..+|. ...+.+||.. .-.+.|.++
T Consensus 188 ~~~~~g~~~t~~eyLe~~L~-~~-~~~~~~~~~~n~~R~~I~~~F~~~~cf~lp~P~~~~~l~~L~~~~~~~L~peF~~~ 265 (592)
T 1f5n_A 188 DLEADGQPLTPDEYLTYSLK-LK-KGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQQ 265 (592)
T ss_dssp CCCCSSSCCCHHHHHHHHTC-CC-CCCSHHHHHHHHHHHHHHHHCSCEEEEECCCCSCGGGGGGGGGSCGGGSCHHHHHH
T ss_pred hhccCCCCCCHHHHHHHHHh-hc-cCCChhhHhhhhHHHHHHHhCCCCcEEEeCCCCcHHHHhhhccCChhhCCHHHHHH
Confidence 32110 0111111100 11 122222211 134556664 3444454432 124679999
Q ss_pred HHHhhcccccccCCCCCCCCCCCccccCC--ccchhhHHHHHHHhcCCCCCchHHHHHHHhhhHHHHHHHHhhhhhhhhH
Q 005892 232 VASLRQRFYHSVAPGGLAGDRRGVVPASG--FSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEW 309 (671)
Q Consensus 232 v~~L~~~f~~~~~~~~~~~~~~~~ip~~g--~~~~~~~~w~~I~~n~dLdlp~q~~~~a~~rc~ei~~~~~~~~~~~~~~ 309 (671)
+..|+..+.....+..+. +.+++.| |..++...|++|.++.-..+++.-.++|...|..+...++..|...
T Consensus 266 l~~l~~~i~~~~~~K~~~----gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s~~~a~a~~e~~~av~~A~~~Y~~~--- 338 (592)
T 1f5n_A 266 VADFCSYIFSNSKTKTLS----GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQ--- 338 (592)
T ss_dssp HHHHHHHHHHHCCCCEET----TTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHccccceeec----CCccccHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999998755443322 2345555 9999999999999988888888889999999999999999988653
Q ss_pred HHHHHHHhcCCc---chHHHHHHHHHHHHhhchhhhhcccchHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005892 310 CELEAAVQSGPI---SSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQ---SMLGHIRSGTLD 383 (671)
Q Consensus 310 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~yd~~a~~y~~~v~~~kr~~L~~~~~~~~~~~~~---~~l~~l~~~~~~ 383 (671)
+.+.+ .-|. +.|-..-.....+|++.|...+.. ++..+-+.+|...|...+..+.. ..-...+..+++
T Consensus 339 --M~~~~-~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~---d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~ 412 (592)
T 1f5n_A 339 --MGQKV-QLPTESLQELLDLHRDSEREAIEVFIRSSFK---DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQ 412 (592)
T ss_dssp --HHHHC-CSSCSSHHHHHHHHHHHHHHHHHHHHHHCCC---CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHhhc-CCCCCCHHHHHHHHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2233 247777788899999999987632 34455567777777666554443 333446677777
Q ss_pred HHHHHHHhhhc
Q 005892 384 KFKDAFDKALS 394 (671)
Q Consensus 384 ~f~~~l~~~~~ 394 (671)
.+-..|.+.++
T Consensus 413 ~l~~~l~~~i~ 423 (592)
T 1f5n_A 413 VIFSPLEEEVK 423 (592)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 76666666554
No 76
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.48 E-value=4.9e-15 Score=159.01 Aligned_cols=169 Identities=11% Similarity=-0.047 Sum_probs=111.9
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------- 80 (671)
+++++.++++.|+.. ..++.++ +.+ .+|++++|+||||||||||+++|+|+. .|+.|.+...+.
T Consensus 44 ~~i~~~~l~~~~~tg--~~ald~l-l~i--~~Gq~~gIiG~nGaGKTTLl~~I~g~~----~~~~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 44 DPLLRQVIDQPFILG--VRAIDGL-LTC--GIGQRIGIFAGSGVGKSTLLGMICNGA----SADIIVLALIGERGREVNE 114 (347)
T ss_dssp CSTTCCCCCSEECCS--CHHHHHH-SCE--ETTCEEEEEECTTSSHHHHHHHHHHHS----CCSEEEEEEESCCHHHHHH
T ss_pred CCeeecccceecCCC--CEEEEee-eee--cCCCEEEEECCCCCCHHHHHHHHhcCC----CCCEEEEEEecccHHHHHH
Confidence 468999999999632 3688888 998 899999999999999999999999998 788775311100
Q ss_pred -------------eEeccccCCC---cchhhhhccCCCcc------------cccccchHHHHHHHHHHHHHHHHHhccc
Q 005892 81 -------------IWMARCAGIE---PCTLIMDLEGTDGR------------ERGEDDTAFEKQSALFALAVSDIVLINM 132 (671)
Q Consensus 81 -------------i~~~~~~~~~---~~~~vld~~g~~~~------------~r~~~~~~~qrQrv~iAlAL~evLlLDE 132 (671)
+.+....... .........++... .........| |++++| +-+.
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-------l~~p 186 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-------SGEP 186 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-------TTCC
T ss_pred HHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-------cCCC
Confidence 0000000000 00000000000000 0001112345 666665 3344
Q ss_pred c-ccCCChhhhhChhHHHHHHHHHHHhhC-CCCc-----EEEEEecCCCcccccccchhhhhcCCeEEEecCccccc
Q 005892 133 W-CHDIGREQAANKPLLKTVFQVMMRLFS-PRKT-----TLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (671)
Q Consensus 133 p-t~~LD~~~~~~~~~~~~v~ell~~L~~-~~g~-----TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~~ 202 (671)
| +.|+|+.. ...+.+++.++.+ +.|. ||+++|||++ ..+|+++.++.+ |+|+.++++.+..
T Consensus 187 ~~t~Gldp~~------~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~d-G~Ivl~~~l~~~~ 254 (347)
T 2obl_A 187 DVRGGFPPSV------FSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILD-GHIVLTRELAEEN 254 (347)
T ss_dssp CCBTTBCHHH------HHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCS-EEEEBCHHHHTTT
T ss_pred CcccCCCHHH------HHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeC-cEEEEeCCHHHcC
Confidence 5 58999988 9999999999875 4587 9999999998 446888888888 9999999877653
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.47 E-value=3e-15 Score=148.40 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=47.9
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
+++++|||++++|.. .++..+..+.+++.++.++.|.|+|+||||++++..+|++++++..
T Consensus 143 ~~~~LDep~~~l~~~--~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 143 SWQDLQARLIGRGTE--TADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp CHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 688999999998532 1223388999999999765689999999999999989999888754
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.46 E-value=7.5e-15 Score=156.54 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=91.6
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccc
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRER 106 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r 106 (671)
++.++++.+ .+|++++|+||||||||||||+|+|+. +|++|.+ .+.+.... ..... +..
T Consensus 160 ~l~~l~~~i--~~g~~v~i~G~~GsGKTTll~~l~g~~----~~~~g~i------~i~~~~e~-------~~~~~--~~~ 218 (330)
T 2pt7_A 160 AISAIKDGI--AIGKNVIVCGGTGSGKTTYIKSIMEFI----PKEERII------SIEDTEEI-------VFKHH--KNY 218 (330)
T ss_dssp HHHHHHHHH--HHTCCEEEEESTTSCHHHHHHHGGGGS----CTTSCEE------EEESSCCC-------CCSSC--SSE
T ss_pred HHhhhhhhc--cCCCEEEEECCCCCCHHHHHHHHhCCC----cCCCcEE------EECCeecc-------ccccc--hhE
Confidence 567788888 899999999999999999999999999 7888853 33322100 00000 000
Q ss_pred cccc-hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 107 GEDD-TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 107 ~~~~-~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
.... .++|+|++++|+|+. ++|++|||++. ++.+++..+... +.|+|+++|+.+ +...+++
T Consensus 219 i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~~-------------e~~~~l~~~~~g-~~tvi~t~H~~~-~~~~~dr 283 (330)
T 2pt7_A 219 TQLFFGGNITSADCLKSCLRMRPDRIILGELRSS-------------EAYDFYNVLCSG-HKGTLTTLHAGS-SEEAFIR 283 (330)
T ss_dssp EEEECBTTBCHHHHHHHHTTSCCSEEEECCCCST-------------HHHHHHHHHHTT-CCCEEEEEECSS-HHHHHHH
T ss_pred EEEEeCCChhHHHHHHHHhhhCCCEEEEcCCChH-------------HHHHHHHHHhcC-CCEEEEEEcccH-HHHHhhh
Confidence 0000 056899999999999 99999999871 134566666532 568999999998 6667888
Q ss_pred hhhhhcCCe
Q 005892 183 PVLREDIQK 191 (671)
Q Consensus 183 ~~ll~~~Gk 191 (671)
++++.. |.
T Consensus 284 i~~l~~-g~ 291 (330)
T 2pt7_A 284 LANMSS-SN 291 (330)
T ss_dssp HHHHHH-TS
T ss_pred heehhc-CC
Confidence 888877 64
No 79
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.44 E-value=1.8e-14 Score=143.23 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=82.6
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeee-ccCceEeccccCC--CcchhhhhccCCCccc---c-
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-TTKGIWMARCAGI--EPCTLIMDLEGTDGRE---R- 106 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q-~~~gi~~~~~~~~--~~~~~vld~~g~~~~~---r- 106 (671)
++ .+|++++|+||||||||||+++|+|+. .+..|... ..+.+++.+.... .....+....++.... .
T Consensus 21 gi--~~G~~~~l~G~nGsGKSTll~~l~g~~----~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GI--ETQAITEVFGEFGSGKTQLAHTLAVMV----QLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SE--ESSEEEEEEESTTSSHHHHHHHHHHHT----TSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTE
T ss_pred CC--CCCcEEEEECCCCCCHHHHHHHHHHHH----hcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcE
Confidence 66 789999999999999999999999965 33222110 1112333332111 1122222323332210 0
Q ss_pred ---cccchHHHHHHHHHHHHHHH----------HHhccccccCCChhhhhC------hhHHHHHHHHHHHhhCCCCcEEE
Q 005892 107 ---GEDDTAFEKQSALFALAVSD----------IVLINMWCHDIGREQAAN------KPLLKTVFQVMMRLFSPRKTTLM 167 (671)
Q Consensus 107 ---~~~~~~~qrQrv~iAlAL~e----------vLlLDEpt~~LD~~~~~~------~~~~~~v~ell~~L~~~~g~TIl 167 (671)
.......+.+.+..+..++. +|++|||++.+|+....+ ......+++.+.++.++.|+|||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi 174 (231)
T 4a74_A 95 YVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVF 174 (231)
T ss_dssp EEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 00111223333444444444 888999999988743111 11134677778777666699999
Q ss_pred EEecCCCc----ccccccchhhhhc
Q 005892 168 FVIRDKTR----TPLENLEPVLRED 188 (671)
Q Consensus 168 ~VtHDl~~----~~~~~~~~~ll~~ 188 (671)
+|+|+... +...++.++++.+
T Consensus 175 ~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 175 VTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp EEEECC---------CCSEEEEEEE
T ss_pred EEeecccCcchhhHhhceEEEEEEe
Confidence 99996654 5656666666654
No 80
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.44 E-value=3.3e-12 Score=146.66 Aligned_cols=183 Identities=13% Similarity=0.102 Sum_probs=83.5
Q ss_pred ceEEEEeeeEEecccccccccccc------ccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCC-CCCeeeccCc
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEV------KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQTTKG 80 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v------~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p-~sG~~q~~~g 80 (671)
+++.+.|+++.|+.. ...++..+ +.+. ...-..++|+|||||||||||++|+|+. .| ++|.+. ..|
T Consensus 9 ~~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~-~l~lp~iaIvG~nGsGKSTLL~~I~Gl~----~P~~sG~vt-~~g 81 (608)
T 3szr_A 9 GSVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQ-DLALPAIAVIGDQSSGKSSVLEALSGVA----LPRGSGIVT-RCP 81 (608)
T ss_dssp -----------CHHH-HHHHHHHHHHHHHHSCCS-SCCCCCEECCCCTTSCHHHHHHHHHSCC-----------CC-CSC
T ss_pred chhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCC-cccCCeEEEECCCCChHHHHHHHHhCCC----CCCCCCeEE-EcC
Confidence 368899999999642 22222222 1110 0112249999999999999999999998 57 688642 122
Q ss_pred eEe--cccc----CCCcchhhhhccCCCcccccccchHHH------------HHHHHHHHHH---HHHHhcccc------
Q 005892 81 IWM--ARCA----GIEPCTLIMDLEGTDGRERGEDDTAFE------------KQSALFALAV---SDIVLINMW------ 133 (671)
Q Consensus 81 i~~--~~~~----~~~~~~~vld~~g~~~~~r~~~~~~~q------------rQrv~iAlAL---~evLlLDEp------ 133 (671)
..+ .... ......++.....+............. ++.+.++.+. -+++++|||
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~ 161 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVA 161 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC-----
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccc
Confidence 221 1000 000001111101111100000000000 0000000000 158899999
Q ss_pred ccCCChhhhhChhHHHHHHHHHHHh-hCCCCcEEEEEecCCCcccccccchhhhh--cCCeEEEecCcccccC
Q 005892 134 CHDIGREQAANKPLLKTVFQVMMRL-FSPRKTTLMFVIRDKTRTPLENLEPVLRE--DIQKIWDSVPKPQAHM 203 (671)
Q Consensus 134 t~~LD~~~~~~~~~~~~v~ell~~L-~~~~g~TIl~VtHDl~~~~~~~~~~~ll~--~~GkI~~~g~~~e~~~ 203 (671)
|++||+.. ...+.+++.++ .++.++++++++||++.+...+.+.+-.. ..++.+...++.+...
T Consensus 162 t~~LD~~~------~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 162 VGNQPADI------GYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp -CCSSCSH------HHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred cCCCCHHH------HHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence 99999987 88999999995 45568999999999987755444433222 2134555555555543
No 81
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.43 E-value=2.7e-14 Score=157.76 Aligned_cols=169 Identities=13% Similarity=-0.049 Sum_probs=115.3
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-------
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g------- 80 (671)
+++++.++++.|... ..++.++ +.+ .+|++++|+|||||||||||++|+|+. +|+.|.+...+.
T Consensus 130 ~~l~~~~v~~~~~tg--~~vld~v-l~i--~~Gq~~~IvG~sGsGKSTLl~~Iag~~----~~~~G~i~~~G~r~~ev~~ 200 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG--VRAINAL-LTV--GRGQRMGLFAGSGVGKSVLLGMMARYT----RADVIVVGLIGERGREVKD 200 (438)
T ss_dssp CTTTSCCCCSBCCCS--CHHHHHH-SCC--BTTCEEEEEECTTSSHHHHHHHHHHHS----CCSEEEEEEESCCHHHHHH
T ss_pred CceEEeccceecCCC--ceEEeee-EEe--cCCCEEEEECCCCCCHHHHHHHHhccc----CCCeEEEEEeceecHHHHH
Confidence 468899999999532 3688899 999 999999999999999999999999999 788886321110
Q ss_pred --------------e-Eecc-ccC-------CCcchhhhhccCCCccc------ccccchHHHHHHHHHHHHHHHHHhcc
Q 005892 81 --------------I-WMAR-CAG-------IEPCTLIMDLEGTDGRE------RGEDDTAFEKQSALFALAVSDIVLIN 131 (671)
Q Consensus 81 --------------i-~~~~-~~~-------~~~~~~vld~~g~~~~~------r~~~~~~~qrQrv~iAlAL~evLlLD 131 (671)
+ ++.. ... .++..+.....+..... ........| |++++| +.
T Consensus 201 ~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--------l~ 271 (438)
T 2dpy_A 201 FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--------IG 271 (438)
T ss_dssp HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--------TT
T ss_pred HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--------hC
Confidence 0 0000 000 00001111110000000 001123446 888877 56
Q ss_pred cc--ccCCChhhhhChhHHHHHHHHHHHhhC---CCCc-----EEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 132 MW--CHDIGREQAANKPLLKTVFQVMMRLFS---PRKT-----TLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 132 Ep--t~~LD~~~~~~~~~~~~v~ell~~L~~---~~g~-----TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
+| ++|||+.. ...+.+++.++.+ +.|. ||++++||++ ...|++++++.+ |+|+.++++.+.
T Consensus 272 ~p~~t~glD~~~------~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~d-G~Ivl~~~~~~~ 342 (438)
T 2dpy_A 272 EPPATKGYPPSV------FAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILD-GHIVLSRRLAEA 342 (438)
T ss_dssp CCCCSSSCCTTH------HHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSS-EEEEECHHHHHT
T ss_pred CCcccccCCHHH------HHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeC-cEEEEeCCHHHc
Confidence 66 88999988 9999999999876 3374 9999999999 446888888888 999999988766
Q ss_pred cC
Q 005892 202 HM 203 (671)
Q Consensus 202 ~~ 203 (671)
..
T Consensus 343 ~~ 344 (438)
T 2dpy_A 343 GH 344 (438)
T ss_dssp TC
T ss_pred cC
Confidence 53
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.42 E-value=2.6e-14 Score=161.43 Aligned_cols=168 Identities=12% Similarity=0.027 Sum_probs=100.2
Q ss_pred eEEEEeeeEEecccccccccccccc-ccccCCccEEEEEcCCCCChHHHHHH--HhcccCCCCCCCCCeeeccCceE---
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKL-SDCGLSYAVVSIMGPQSSGKSTLLNH--LFGTNFREMDAFKGRSQTTKGIW--- 82 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l-~~~g~~geivaIlGpNGSGKSTLLn~--L~Gl~f~~m~p~sG~~q~~~gi~--- 82 (671)
+++..++.+.+.+ ..++.++++ ++ .+|++++|+||||||||||+++ ++|+. +|.+|.+...+.-.
T Consensus 12 ~~~~~~~~~~~~g---~~~Ld~i~~G~i--~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~----~~~~g~i~v~g~~~~~~ 82 (525)
T 1tf7_A 12 NSEHQAIAKMRTM---IEGFDDISHGGL--PIGRSTLVSGTSGTGKTLFSIQFLYNGII----EFDEPGVFVTFEETPQD 82 (525)
T ss_dssp --CCSSCCEECCC---CTTHHHHTTSSE--ETTSEEEEEESTTSSHHHHHHHHHHHHHH----HHCCCEEEEESSSCHHH
T ss_pred CccccccccccCC---chhHHHhcCCCC--CCCeEEEEEcCCCCCHHHHHHHHHHHHHH----hCCCCEEEEEEeCCHHH
Confidence 4555566544422 468999999 88 9999999999999999999999 78998 67778532111000
Q ss_pred ---eccccCCC--cc-----hhhhhccCCCcccc-cccchHHHHHHHHHHHHHH----HHHhccccccCCChhhhhChhH
Q 005892 83 ---MARCAGIE--PC-----TLIMDLEGTDGRER-GEDDTAFEKQSALFALAVS----DIVLINMWCHDIGREQAANKPL 147 (671)
Q Consensus 83 ---~~~~~~~~--~~-----~~vld~~g~~~~~r-~~~~~~~qrQrv~iAlAL~----evLlLDEpt~~LD~~~~~~~~~ 147 (671)
.....+.. +. ...++... ..... .-.........-.+..+|+ ++|++|||++.+.. ...|+..
T Consensus 83 ~~~~~~~~g~~~q~~~~~~~l~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-~~lD~~~ 160 (525)
T 1tf7_A 83 IIKNARSFGWDLAKLVDEGKLFILDASP-DPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-YDASSVV 160 (525)
T ss_dssp HHHHHGGGTCCHHHHHHTTSEEEEECCC-CSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-TCCHHHH
T ss_pred HHHHHHHcCCChHHhhccCcEEEEecCc-ccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-cCCHHHH
Confidence 00000100 00 00011000 00000 0011222333333444554 89999999975421 1112233
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEecCCCcc---------cccccchhhhhc
Q 005892 148 LKTVFQVMMRLFSPRKTTLMFVIRDKTRT---------PLENLEPVLRED 188 (671)
Q Consensus 148 ~~~v~ell~~L~~~~g~TIl~VtHDl~~~---------~~~~~~~~ll~~ 188 (671)
+..+++++..+.+ .|+|+|++||+++.+ ..+||+++++.+
T Consensus 161 ~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 161 RRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 8999999999976 499999999999875 334888888866
No 83
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.42 E-value=4.9e-13 Score=141.68 Aligned_cols=81 Identities=10% Similarity=-0.058 Sum_probs=63.2
Q ss_pred cchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 109 DDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 109 ~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
..+.+|+|++++|++++ ++|||||||++||+.. ...+++++.++. + |.++|+|||+.+ +...|+
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~------~~~l~~~l~~~~-~-~~~vi~~tH~~~-~~~~~d 289 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYN------AERFKRLLKENS-K-HTQFIVITHNKI-VMEAAD 289 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHH------HHHHHHHHHHHT-T-TSEEEEECCCTT-GGGGCS
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHhc-C-CCeEEEEECCHH-HHhhCc
Confidence 45678999999999985 6999999999999998 999999999984 3 889999999975 444677
Q ss_pred ch--hhhhcCCe-EEEecCcc
Q 005892 182 EP--VLREDIQK-IWDSVPKP 199 (671)
Q Consensus 182 ~~--~ll~~~Gk-I~~~g~~~ 199 (671)
++ +++.+ |. .+.....+
T Consensus 290 ~~~~v~~~~-g~s~~~~~~~~ 309 (322)
T 1e69_A 290 LLHGVTMVN-GVSAIVPVEVE 309 (322)
T ss_dssp EEEEEEESS-SCEEEEECCC-
T ss_pred eEEEEEEeC-CEEEEEEEEcc
Confidence 64 55666 53 34444433
No 84
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.38 E-value=8e-14 Score=165.81 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=89.2
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcc
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 104 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~ 104 (671)
..+..+++++. .+|++++|+||||||||||||+|+++.. .+..|.........+.. .+. ++...|....
T Consensus 660 ~~V~ndvsl~~--~~g~i~~ItGPNGaGKSTlLr~i~~i~~---~aq~g~~vpa~~~~i~~---~d~---i~~~ig~~d~ 728 (918)
T 3thx_B 660 QYVPNNTDLSE--DSERVMIITGPNMGGKSSYIKQVALITI---MAQIGSYVPAEEATIGI---VDG---IFTRMGAADN 728 (918)
T ss_dssp SSCCEEEEECT--TSCCEEEEESCCCHHHHHHHHHHHHHHH---HHHHTCCBSSSEEEEEC---CSE---EEEEC-----
T ss_pred ceecccccccC--CCCeEEEEECCCCCchHHHHHHHHHHHH---HhhcCccccchhhhhhH---HHH---HHHhCChHHH
Confidence 45788999998 8999999999999999999999987641 11122110000000100 000 0111121111
Q ss_pred c--ccccchHHHHHHHHHHHHHH--HHHhccccccCCChhhhhChhHHHHHH-HHHHHhhCCCCcEEEEEecCCCccccc
Q 005892 105 E--RGEDDTAFEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (671)
Q Consensus 105 ~--r~~~~~~~qrQrv~iAlAL~--evLlLDEpt~~LD~~~~~~~~~~~~v~-ell~~L~~~~g~TIl~VtHDl~~~~~~ 179 (671)
. .....+..|++++.++.++. ++||||||++|+|+.. ...+. .++..+.++.|+|+||+|||++.+. +
T Consensus 729 l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~------~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l 801 (918)
T 3thx_B 729 IYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHD------GIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-L 801 (918)
T ss_dssp -----CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHH------HHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-H
T ss_pred HHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-H
Confidence 1 11223456888888887744 8999999999999987 77776 6666675546999999999987764 3
Q ss_pred ccc
Q 005892 180 NLE 182 (671)
Q Consensus 180 ~~~ 182 (671)
+++
T Consensus 802 ~~~ 804 (918)
T 3thx_B 802 EKN 804 (918)
T ss_dssp HHH
T ss_pred Hhh
Confidence 444
No 85
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.35 E-value=3.6e-13 Score=133.65 Aligned_cols=145 Identities=8% Similarity=-0.062 Sum_probs=86.3
Q ss_pred ccccccc-ccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCc--
Q 005892 27 FIKEVKL-SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDG-- 103 (671)
Q Consensus 27 vl~~v~l-~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~-- 103 (671)
.+.++.. ++ .+|++++|+||||||||||++.|+|.. .+..|.+ .++............+...+...
T Consensus 11 ~Ld~~~~ggi--~~G~~~~i~G~~GsGKTtl~~~l~~~~----~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (235)
T 2w0m_A 11 DFDKLIQGGI--PQGFFIALTGEPGTGKTIFSLHFIAKG----LRDGDPC-----IYVTTEESRDSIIRQAKQFNWDFEE 79 (235)
T ss_dssp HHHGGGTTSE--ETTCEEEEECSTTSSHHHHHHHHHHHH----HHHTCCE-----EEEESSSCHHHHHHHHHHTTCCCGG
T ss_pred HHHHHhcCCC--cCCCEEEEEcCCCCCHHHHHHHHHHHH----HHCCCeE-----EEEEcccCHHHHHHHHHHhcchHHH
Confidence 4455555 56 789999999999999999999999877 4555532 11111000000000000000000
Q ss_pred ------------------ccccccchHHHHHHHHHHHHHH---H--HHhccccccCC--ChhhhhChhHHHHHHHHHHHh
Q 005892 104 ------------------RERGEDDTAFEKQSALFALAVS---D--IVLINMWCHDI--GREQAANKPLLKTVFQVMMRL 158 (671)
Q Consensus 104 ------------------~~r~~~~~~~qrQrv~iAlAL~---e--vLlLDEpt~~L--D~~~~~~~~~~~~v~ell~~L 158 (671)
..........+.++...+.... + +|++|||++.+ |+.. ...+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~------~~~~~~~l~~~ 153 (235)
T 2w0m_A 80 YIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAM------ARKISYYLKRV 153 (235)
T ss_dssp GBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGG------HHHHHHHHHHH
T ss_pred HhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHH------HHHHHHHHHHH
Confidence 0000011233444444444333 6 99999999877 7655 88899999988
Q ss_pred hCCCCcEEEEEecCC--------Ccccccccchhhhhc
Q 005892 159 FSPRKTTLMFVIRDK--------TRTPLENLEPVLRED 188 (671)
Q Consensus 159 ~~~~g~TIl~VtHDl--------~~~~~~~~~~~ll~~ 188 (671)
.++.|+|+|+++|+. ..+...||.++++..
T Consensus 154 ~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 154 LNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp HHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 766799999999999 446666777776654
No 86
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.35 E-value=3.6e-13 Score=138.95 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=81.4
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC-CCeeeccCceEeccccCCCcchhh-hhccCCCc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-KGRSQTTKGIWMARCAGIEPCTLI-MDLEGTDG 103 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~-sG~~q~~~gi~~~~~~~~~~~~~v-ld~~g~~~ 103 (671)
.++.+++ . .+|++++|+|||||||||||++|+|+. +|+ +|++...+. .+... ......++ ....|...
T Consensus 15 ~vl~~i~--i--~~g~~v~i~Gp~GsGKSTll~~l~g~~----~~~~~G~I~~~g~-~i~~~-~~~~~~~v~q~~~gl~~ 84 (261)
T 2eyu_A 15 DKVLELC--H--RKMGLILVTGPTGSGKSTTIASMIDYI----NQTKSYHIITIED-PIEYV-FKHKKSIVNQREVGEDT 84 (261)
T ss_dssp THHHHGG--G--CSSEEEEEECSTTCSHHHHHHHHHHHH----HHHCCCEEEEEES-SCCSC-CCCSSSEEEEEEBTTTB
T ss_pred HHHHHHh--h--CCCCEEEEECCCCccHHHHHHHHHHhC----CCCCCCEEEEcCC-cceee-cCCcceeeeHHHhCCCH
Confidence 4677777 6 789999999999999999999999998 676 786422110 00000 00000000 00111111
Q ss_pred ccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 104 RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 104 ~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
. .-++++++++. ++|++|||+ |+.. ...+ +... . .|.++++++|+.+ +...+
T Consensus 85 -------~---~l~~~la~aL~~~p~illlDEp~---D~~~------~~~~---l~~~-~-~g~~vl~t~H~~~-~~~~~ 139 (261)
T 2eyu_A 85 -------K---SFADALRAALREDPDVIFVGEMR---DLET------VETA---LRAA-E-TGHLVFGTLHTNT-AIDTI 139 (261)
T ss_dssp -------S---CHHHHHHHHHHHCCSEEEESCCC---SHHH------HHHH---HHHH-H-TTCEEEEEECCSS-HHHHH
T ss_pred -------H---HHHHHHHHHHhhCCCEEEeCCCC---CHHH------HHHH---HHHH-c-cCCEEEEEeCcch-HHHHH
Confidence 1 12789999998 899999998 7655 4333 3332 3 4899999999987 55567
Q ss_pred cchhhhh
Q 005892 181 LEPVLRE 187 (671)
Q Consensus 181 ~~~~ll~ 187 (671)
++++.+.
T Consensus 140 dri~~l~ 146 (261)
T 2eyu_A 140 HRIVDIF 146 (261)
T ss_dssp HHHHHTS
T ss_pred HHHhhhc
Confidence 7766664
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.34 E-value=4.2e-13 Score=151.55 Aligned_cols=145 Identities=12% Similarity=0.016 Sum_probs=98.4
Q ss_pred ccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCC---------
Q 005892 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD--------- 102 (671)
Q Consensus 32 ~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~--------- 102 (671)
+.++ .+|++++|+||||||||||+++++|+. .|. |.. .+++...........-....|.+
T Consensus 275 ~g~i--~~G~i~~i~G~~GsGKSTLl~~l~g~~----~~~-G~~----vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~ 343 (525)
T 1tf7_A 275 GGGF--FKDSIILATGATGTGKTLLVSRFVENA----CAN-KER----AILFAYEESRAQLLRNAYSWGMDFEEMERQNL 343 (525)
T ss_dssp TSSE--ESSCEEEEEECTTSSHHHHHHHHHHHH----HTT-TCC----EEEEESSSCHHHHHHHHHTTSCCHHHHHHTTS
T ss_pred CCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHH----HhC-CCC----EEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCC
Confidence 3467 889999999999999999999999998 454 631 12222110000000000001111
Q ss_pred -cc--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC---
Q 005892 103 -GR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK--- 173 (671)
Q Consensus 103 -~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl--- 173 (671)
.. ......+..|+|++++|+++. ++|++| |+++||+.. .+...+..+.+++..+.+. |+|+|+|+|+.
T Consensus 344 ~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~-~~~~~~~~i~~ll~~l~~~-g~tvilvsh~~~~~ 420 (525)
T 1tf7_A 344 LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGV-SNNAFRQFVIGVTGYAKQE-EITGLFTNTSDQFM 420 (525)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSS-CHHHHHHHHHHHHHHHHHT-TCEEEEEEECSSSS
T ss_pred EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhC-ChHHHHHHHHHHHHHHHhC-CCEEEEEECccccc
Confidence 00 011234678999999999998 999999 999999871 0011388888998888754 99999999999
Q ss_pred -------CcccccccchhhhhcCCe
Q 005892 174 -------TRTPLENLEPVLREDIQK 191 (671)
Q Consensus 174 -------~~~~~~~~~~~ll~~~Gk 191 (671)
..+..+||+++++.+ |+
T Consensus 421 ~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 421 GAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp CCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred CcccccCcccceeeeEEEEEEE-EE
Confidence 666777888888876 65
No 88
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.33 E-value=3.1e-13 Score=142.39 Aligned_cols=148 Identities=13% Similarity=0.044 Sum_probs=89.0
Q ss_pred cccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------------------ceE-eccccC
Q 005892 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------------------GIW-MARCAG 88 (671)
Q Consensus 29 ~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------------------gi~-~~~~~~ 88 (671)
..+++.. .+|++++|+||||||||||+++|+|+. .|++|++...+ ++. +.....
T Consensus 91 ~~l~~~~--~~g~vi~lvG~nGsGKTTll~~Lag~l----~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~ 164 (302)
T 3b9q_A 91 TELQLGF--RKPAVIMIVGVNGGGKTTSLGKLAHRL----KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 164 (302)
T ss_dssp CSCCCCS--SSCEEEEEECCTTSCHHHHHHHHHHHH----HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred ccccccc--CCCcEEEEEcCCCCCHHHHHHHHHHHH----HHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence 3567777 789999999999999999999999998 78888732110 010 110111
Q ss_pred -CCcch----------------hhhhccCCCcccccccchHHHHHHHHHHHHHH---H--HHhccccccCCChhhhhChh
Q 005892 89 -IEPCT----------------LIMDLEGTDGRERGEDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKP 146 (671)
Q Consensus 89 -~~~~~----------------~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---e--vLlLDEpt~~LD~~~~~~~~ 146 (671)
..+.. .++|..|....... .....-+||+++|++++ + +|++| ||+|+|+..
T Consensus 165 ~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~----- 237 (302)
T 3b9q_A 165 KAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP----- 237 (302)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH-----
T ss_pred ccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH-----
Confidence 11100 11222232211110 11123489999999998 7 99999 999999865
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC-eEEEecC
Q 005892 147 LLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ-KIWDSVP 197 (671)
Q Consensus 147 ~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G-kI~~~g~ 197 (671)
+ +.++.+..|.|+|++|| ++.+........+....| .|...|.
T Consensus 238 -~------~~~~~~~~g~t~iiiTh-lD~~~~~g~~l~~~~~~~~pi~~i~~ 281 (302)
T 3b9q_A 238 -Q------AREFNEVVGITGLILTK-LDGSARGGCVVSVVEELGIPVKFIGV 281 (302)
T ss_dssp -H------HHHHHHHTCCCEEEEEC-CSSCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred -H------HHHHHHhcCCCEEEEeC-CCCCCccChheehHHHHCCCEEEEeC
Confidence 2 23343335899999999 555554444444443324 4544443
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.33 E-value=4.7e-13 Score=139.55 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=91.6
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC-eeeccCceEecccc--------------CCC
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG-RSQTTKGIWMARCA--------------GIE 90 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG-~~q~~~gi~~~~~~--------------~~~ 90 (671)
..+.++++++ .+|++++|+||||||||||++.|+|.. .|.+| ++. ++.... +..
T Consensus 23 ~~Ld~i~~~l--~~G~~~~i~G~~G~GKTTl~~~ia~~~----~~~~G~~v~-----~~~~e~~~~~~~~r~~~~~~~~~ 91 (296)
T 1cr0_A 23 TGINDKTLGA--RGGEVIMVTSGSGMGKSTFVRQQALQW----GTAMGKKVG-----LAMLEESVEETAEDLIGLHNRVR 91 (296)
T ss_dssp TTHHHHHCSB--CTTCEEEEEESTTSSHHHHHHHHHHHH----HHTSCCCEE-----EEESSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCC--CCCeEEEEEeCCCCCHHHHHHHHHHHH----HHHcCCeEE-----EEeCcCCHHHHHHHHHHHHcCCC
Confidence 4677888888 999999999999999999999999998 56767 321 111000 000
Q ss_pred cc----hh---------------hhhccCCCcccccccchHHH-HHHHHHHHHHH---HHHhccccccCCChhhhhCh-h
Q 005892 91 PC----TL---------------IMDLEGTDGRERGEDDTAFE-KQSALFALAVS---DIVLINMWCHDIGREQAANK-P 146 (671)
Q Consensus 91 ~~----~~---------------vld~~g~~~~~r~~~~~~~q-rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~-~ 146 (671)
.. .. ++...++.-..........+ +|++. ++++. ++|++|||++.++.....++ .
T Consensus 92 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~ 170 (296)
T 1cr0_A 92 LRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERK 170 (296)
T ss_dssp GGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CH
T ss_pred hhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHH
Confidence 00 00 00000110000001112223 56666 77666 99999999994432110122 3
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEecCC--C--------------------cccccccchhhhhcCCeE
Q 005892 147 LLKTVFQVMMRLFSPRKTTLMFVIRDK--T--------------------RTPLENLEPVLREDIQKI 192 (671)
Q Consensus 147 ~~~~v~ell~~L~~~~g~TIl~VtHDl--~--------------------~~~~~~~~~~ll~~~GkI 192 (671)
....+++.|+++.++.|+|||+++|+. + .+...|+.++++.+ |+.
T Consensus 171 ~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~~ 237 (296)
T 1cr0_A 171 MIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C--
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Ccc
Confidence 367888999998776799999999996 4 55667888888877 654
No 90
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.29 E-value=1.1e-12 Score=154.46 Aligned_cols=150 Identities=14% Similarity=0.077 Sum_probs=89.4
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcc-
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR- 104 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~- 104 (671)
.++.+++++ .+|++++|+||||||||||||+|+|+.. ....|.........+. ..+.. +...|....
T Consensus 596 ~vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl~~---~~q~G~~vpa~~~~i~---~~~~i---~~~~~~~d~l 663 (800)
T 1wb9_A 596 FIANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALIAL---MAYIGSYVPAQKVEIG---PIDRI---FTRVGAADDL 663 (800)
T ss_dssp CCCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHHHH---HHTTTCCBSSSEEEEC---CCCEE---EEEEC-----
T ss_pred eeeeccccc---CCCcEEEEECCCCCChHHHHHHHHHHHH---HHhcCcccchhcccce---eHHHH---HhhCCHHHHH
Confidence 467788887 5889999999999999999999999852 1233421110000010 00000 011111100
Q ss_pred ccc-ccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHH-HHHHHHhhCCCCcEEEEEecCCCccccc
Q 005892 105 ERG-EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV-FQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (671)
Q Consensus 105 ~r~-~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v-~ell~~L~~~~g~TIl~VtHDl~~~~~~ 179 (671)
..+ ......+ +++..++..+ ++||||||++|+|+.. ...+ ..++..+.+..|.++||+||+++.+. +
T Consensus 664 ~~~~stf~~e~-~~~~~il~~a~~psLlLLDEp~~Gtd~~d------~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l 735 (800)
T 1wb9_A 664 ASGRSTFMVEM-TETANILHNATEYSLVLMDEIGRGTSTYD------GLSLAWACAENLANKIKALTLFATHYFELTQ-L 735 (800)
T ss_dssp ------CHHHH-HHHHHHHHHCCTTEEEEEESCCCCSSSSH------HHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-H
T ss_pred HhhhhhhhHHH-HHHHHHHHhccCCCEEEEECCCCCCChhH------HHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-H
Confidence 000 0112223 3333333334 8999999999999876 4443 66777776545899999999997764 6
Q ss_pred ccchhhhhcCCeEEEec
Q 005892 180 NLEPVLREDIQKIWDSV 196 (671)
Q Consensus 180 ~~~~~ll~~~GkI~~~g 196 (671)
+++...+.+ |++....
T Consensus 736 ~d~~~~v~n-~~~~~~~ 751 (800)
T 1wb9_A 736 PEKMEGVAN-VHLDALE 751 (800)
T ss_dssp HHHSTTEEE-EEEEEEE
T ss_pred hhhhhceEE-EEEEEEE
Confidence 777666666 7776544
No 91
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.28 E-value=1.5e-12 Score=140.19 Aligned_cols=147 Identities=13% Similarity=0.043 Sum_probs=90.2
Q ss_pred ccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------------------ceE-eccccC-
Q 005892 30 EVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------------------GIW-MARCAG- 88 (671)
Q Consensus 30 ~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------------------gi~-~~~~~~- 88 (671)
.+++.. .+|++++|+||||||||||++.|+|++ .|.+|++.... ++. +.....
T Consensus 149 ~l~l~~--~~g~vi~lvG~nGsGKTTll~~Lag~l----~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~ 222 (359)
T 2og2_A 149 ELQLGF--RKPAVIMIVGVNGGGKTTSLGKLAHRL----KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 222 (359)
T ss_dssp SCCCCS--SSSEEEEEECCTTSCHHHHHHHHHHHH----HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS
T ss_pred Ccceec--CCCeEEEEEcCCCChHHHHHHHHHhhc----cccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc
Confidence 466777 789999999999999999999999998 68888732110 010 111111
Q ss_pred CCcch----------------hhhhccCCCcccccccchHHHHHHHHHHHHHH---H--HHhccccccCCChhhhhChhH
Q 005892 89 IEPCT----------------LIMDLEGTDGRERGEDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPL 147 (671)
Q Consensus 89 ~~~~~----------------~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---e--vLlLDEpt~~LD~~~~~~~~~ 147 (671)
..+.. .++|..|...... ......-+||+++|++++ + +|++| ||+|+|+..
T Consensus 223 ~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~------ 294 (359)
T 2og2_A 223 AKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP------ 294 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCH-HHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH------
T ss_pred cChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhh-hHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH------
Confidence 11100 1122223322111 011123489999999998 7 99999 999999865
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCC-eEEEecC
Q 005892 148 LKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ-KIWDSVP 197 (671)
Q Consensus 148 ~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~G-kI~~~g~ 197 (671)
+ +..+.+..|.|+|++|| ++.+........+....| .|...|.
T Consensus 295 ~------~~~~~~~~g~t~iiiTh-lD~~~~gG~~lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 295 Q------AREFNEVVGITGLILTK-LDGSARGGCVVSVVEELGIPVKFIGV 338 (359)
T ss_dssp H------HHHHHHHTCCCEEEEES-CTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred H------HHHHHHhcCCeEEEEec-CcccccccHHHHHHHHhCCCEEEEeC
Confidence 2 12333335899999999 565555555555554334 5655544
No 92
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.27 E-value=4.1e-15 Score=156.69 Aligned_cols=147 Identities=12% Similarity=-0.003 Sum_probs=95.9
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC---ceEecc
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---GIWMAR 85 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~---gi~~~~ 85 (671)
+|+++|+++.|+ ..++.++++.+ .+|++++|+||||||||||+++|+|+. +|++.... ...+.+
T Consensus 101 ~i~~~~vs~~y~----~~vL~~vsl~i--~~Ge~vaIvGpsGsGKSTLl~lL~gl~-------~G~I~~~v~q~~~lf~~ 167 (305)
T 2v9p_A 101 FFNYQNIELITF----INALKLWLKGI--PKKNCLAFIGPPNTGKSMLCNSLIHFL-------GGSVLSFANHKSHFWLA 167 (305)
T ss_dssp HHHHTTCCHHHH----HHHHHHHHHTC--TTCSEEEEECSSSSSHHHHHHHHHHHH-------TCEEECGGGTTSGGGGG
T ss_pred eEEEEEEEEEcC----hhhhccceEEe--cCCCEEEEECCCCCcHHHHHHHHhhhc-------CceEEEEecCccccccc
Confidence 478889999995 36899999999 999999999999999999999999986 46642100 000111
Q ss_pred ccCCC-cchhh----------hhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHH
Q 005892 86 CAGIE-PCTLI----------MDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV 151 (671)
Q Consensus 86 ~~~~~-~~~~v----------ld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v 151 (671)
+..+ ++.+. ++.. ++....+...+++|||| |+|++ ++|| |++||+.. ...+
T Consensus 168 -ti~~~ni~~~~~~~~~~~~~i~~~-L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~------~~~i 232 (305)
T 2v9p_A 168 -SLADTRAALVDDATHACWRYFDTY-LRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA------EDRY 232 (305)
T ss_dssp -GGTTCSCEEEEEECHHHHHHHHHT-TTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTT------CGGG
T ss_pred -cHHHHhhccCccccHHHHHHHHHH-hHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH------HHHH
Confidence 1111 11110 1110 11111133456779999 88888 6776 99999987 3333
Q ss_pred HHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 152 FQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 152 ~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
.. ++|++..+. .++++ ++.+ |+|+..|++.++
T Consensus 233 ~~---------------ltH~~~~~~-~aD~i-vl~~-G~iv~~g~~~el 264 (305)
T 2v9p_A 233 LY---------------LHSRVQTFR-FEQPC-TDES-GEQPFNITDADW 264 (305)
T ss_dssp GG---------------GTTTEEEEE-CCCCC-CCC----CCCCCCHHHH
T ss_pred HH---------------HhCCHHHHH-hCCEE-EEeC-CEEEEeCCHHHH
Confidence 21 178876554 68888 8877 999999987765
No 93
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.25 E-value=2.8e-13 Score=135.73 Aligned_cols=146 Identities=14% Similarity=-0.008 Sum_probs=81.0
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeec-----c----------CceEeccccCC
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-----T----------KGIWMARCAGI 89 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~-----~----------~gi~~~~~~~~ 89 (671)
+.-+.+++|.+ .+|++++|+||||||||||+++|+|+. | |.+.. + .++.+.....+
T Consensus 10 ~~~l~~isl~i--~~G~~~~lvGpsGsGKSTLl~~L~g~~-----p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (218)
T 1z6g_A 10 HSSGLVPRGSM--NNIYPLVICGPSGVGKGTLIKKLLNEF-----P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIF 80 (218)
T ss_dssp --------------CCCCEEEECSTTSSHHHHHHHHHHHS-----T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHH
T ss_pred cccccCCceec--CCCCEEEEECCCCCCHHHHHHHHHhhC-----C--CcEEEeecccCCCCCcccccCCeEEECCHHHH
Confidence 35678899999 899999999999999999999999987 4 54221 0 00000000000
Q ss_pred Cc------ch----hhhhccCCCcc------------cccccchHHHHHHHHH-----HHHHH---HHHhccccccCCCh
Q 005892 90 EP------CT----LIMDLEGTDGR------------ERGEDDTAFEKQSALF-----ALAVS---DIVLINMWCHDIGR 139 (671)
Q Consensus 90 ~~------~~----~vld~~g~~~~------------~r~~~~~~~qrQrv~i-----AlAL~---evLlLDEpt~~LD~ 139 (671)
.. .. +.....|.+.. ......+++|+||+++ ++++. ++++||||++++|.
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 81 EDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp HHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred HHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 00 00 00000011100 0001236789999999 56666 79999999999998
Q ss_pred hhhhChhHHHHHHHHHHHhhCC------CCcEEEEEecCCCcccccccchhh
Q 005892 140 EQAANKPLLKTVFQVMMRLFSP------RKTTLMFVIRDKTRTPLENLEPVL 185 (671)
Q Consensus 140 ~~~~~~~~~~~v~ell~~L~~~------~g~TIl~VtHDl~~~~~~~~~~~l 185 (671)
.. ...+.+.+.++... .+...|+++||++++....++++.
T Consensus 161 ~~------~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 161 EN------QEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp CC------HHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CC------HHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 76 55565555544321 367889999998887766655544
No 94
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.24 E-value=3e-13 Score=140.16 Aligned_cols=119 Identities=19% Similarity=0.203 Sum_probs=71.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC----------ceE-eccccCCCcchhhhhccCCCccccc---
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----------GIW-MARCAGIEPCTLIMDLEGTDGRERG--- 107 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~----------gi~-~~~~~~~~~~~~vld~~g~~~~~r~--- 107 (671)
.++|+||||||||||+|+|+|+. .|++|++...+ .+- +....+......+.|..++......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~----~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ----VSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----C------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 58999999999999999999999 78888632110 000 0000111122334455544321111
Q ss_pred -----------------ccchHHHHHHHHHHHHHHHHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEe
Q 005892 108 -----------------EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVI 170 (671)
Q Consensus 108 -----------------~~~~~~qrQrv~iAlAL~evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~Vt 170 (671)
...+++|+||+.+|++++-++++|||+++||+.. .++++.+.+. +++|+|+
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----------~~~l~~L~~~--~~vI~Vi 147 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----------LEFMKHLSKV--VNIIPVI 147 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----------HHHHHHHHTT--SEEEEEE
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----------HHHHHHHHhc--CcEEEEE
Confidence 0112238899999999999999999999999854 4556666543 8899999
Q ss_pred cCCCcc
Q 005892 171 RDKTRT 176 (671)
Q Consensus 171 HDl~~~ 176 (671)
|..+.+
T Consensus 148 ~K~D~l 153 (270)
T 3sop_A 148 AKADTM 153 (270)
T ss_dssp TTGGGS
T ss_pred eccccC
Confidence 987644
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.24 E-value=1.3e-12 Score=153.21 Aligned_cols=127 Identities=18% Similarity=0.239 Sum_probs=82.2
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 105 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~ 105 (671)
.++.+++++ |++++|+||||||||||||+|+|+.. .+..|.........+.. ... ++...+.....
T Consensus 567 ~vl~disl~-----g~i~~I~GpNGsGKSTlLr~iagl~~---~~~~G~~vpa~~~~i~~---v~~---i~~~~~~~d~l 632 (765)
T 1ewq_A 567 FVPNDLEMA-----HELVLITGPNMAGKSTFLRQTALIAL---LAQVGSFVPAEEAHLPL---FDG---IYTRIGASDDL 632 (765)
T ss_dssp CCCEEEEES-----SCEEEEESCSSSSHHHHHHHHHHHHH---HHTTTCCBSSSEEEECC---CSE---EEEECCC----
T ss_pred eEeeeccCC-----CcEEEEECCCCCChHHHHHHHHhhhh---hcccCceeehhccceee---HHH---hhccCCHHHHH
Confidence 566777775 78999999999999999999999862 25667432111111110 000 01111111111
Q ss_pred ccccchHHHHHHHHHHHHH--H---HHHhcccc---ccCCChhhhhChhHH-HHHHHHHHHhhCCCCcEEEEEecCCCcc
Q 005892 106 RGEDDTAFEKQSALFALAV--S---DIVLINMW---CHDIGREQAANKPLL-KTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 106 r~~~~~~~qrQrv~iAlAL--~---evLlLDEp---t~~LD~~~~~~~~~~-~~v~ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
.. ..+.|+++++.++.++ + +++||||| |+++|+.. . ..+.+.+.+ .|.++||+||+++.+
T Consensus 633 ~~-g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~------~~~~i~~~L~~----~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 633 AG-GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVA------IATAVAEALHE----RRAYTLFATHYFELT 701 (765)
T ss_dssp ---CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHH------HHHHHHHHHHH----HTCEEEEECCCHHHH
T ss_pred Hh-cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHH------HHHHHHHHHHh----CCCEEEEEeCCHHHH
Confidence 11 1246788999999888 4 89999999 88888765 4 456676665 388999999998765
Q ss_pred c
Q 005892 177 P 177 (671)
Q Consensus 177 ~ 177 (671)
.
T Consensus 702 ~ 702 (765)
T 1ewq_A 702 A 702 (765)
T ss_dssp T
T ss_pred H
Confidence 4
No 96
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.24 E-value=3.1e-12 Score=136.52 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=55.9
Q ss_pred chHHHHHHHHHH------HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 110 DTAFEKQSALFA------LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 110 ~~~~qrQrv~iA------lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
.+++|+|++++| ++++ ++|||||||++||+.. +..+++++.++... |.|+|+||||.+ +...|
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~------~~~l~~~l~~~~~~-~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER------RRKLITIMERYLKK-IPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHH------HHHHHHHHHHTGGG-SSEEEEEESCGG-GGGGC
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEEChHH-HHHhC
Confidence 467899965544 4444 7999999999999998 99999999998765 889999999965 45567
Q ss_pred cchhhhh
Q 005892 181 LEPVLRE 187 (671)
Q Consensus 181 ~~~~ll~ 187 (671)
++++++.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 7776653
No 97
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.24 E-value=2.9e-11 Score=130.13 Aligned_cols=76 Identities=5% Similarity=0.069 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHH------------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccc
Q 005892 111 TAFEKQSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~------------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~ 178 (671)
+.+|+|++++|++++ ++||||||+++||+.. +..+++.+.++. .|+|++|| ++.
T Consensus 267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~------~~~l~~~l~~~~----qt~i~~th-~~~--- 332 (359)
T 2o5v_A 267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHR------RQYLLDLAASVP----QAIVTGTE-LAP--- 332 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHH------HHHHHHHHHHSS----EEEEEESS-CCT---
T ss_pred CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHH------HHHHHHHHHhcC----cEEEEEEe-ccc---
Confidence 345999999999998 6999999999999998 999999998873 69999999 444
Q ss_pred cccchhhhhcCCeEEEecCcccc
Q 005892 179 ENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 179 ~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
.+++++++.+ |+|+..|++.++
T Consensus 333 ~~~~i~~l~~-G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQA-GRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEET-TEEEECCCTTTS
T ss_pred cCCEEEEEEC-CEEEecCCHHHH
Confidence 5788888877 999999988765
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.12 E-value=1.7e-12 Score=136.62 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=64.0
Q ss_pred EeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcc-cCCCCCCCCCeee-------cc-----C
Q 005892 13 IDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT-NFREMDAFKGRSQ-------TT-----K 79 (671)
Q Consensus 13 ~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl-~f~~m~p~sG~~q-------~~-----~ 79 (671)
.|+++.|+. ..++.++++. ++|+||||+|||||+|+|+|. . .|.+| +. .+ .
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~--------I~lvG~nG~GKSTLl~~L~g~~~----~~~~g-i~~~g~~~~~t~~~~~~ 65 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFT--------LMVVGESGLGKSTLINSLFLTDL----YPERV-ISGAAEKIERTVQIEAS 65 (301)
T ss_dssp -------------------CEE--------EEEEEETTSSHHHHHHHHHC-----------------------------C
T ss_pred CCCcceECC---EEEEcCCCEE--------EEEECCCCCCHHHHHHHHhCCCc----cCCCC-cccCCcccCCcceEeeE
Confidence 478888854 3677777776 399999999999999999998 6 46666 11 01 0
Q ss_pred ceEeccccCCCcchhhhhccCCCcc----ccc-cc--------------chHHHHHHHHHHHHHHHHHhcccccc-CCCh
Q 005892 80 GIWMARCAGIEPCTLIMDLEGTDGR----ERG-ED--------------DTAFEKQSALFALAVSDIVLINMWCH-DIGR 139 (671)
Q Consensus 80 gi~~~~~~~~~~~~~vld~~g~~~~----~r~-~~--------------~~~~qrQrv~iAlAL~evLlLDEpt~-~LD~ 139 (671)
++.+. ..+......+.|..|.... ++. .. .+++|+|++.+|++++ +|++|||++ +||+
T Consensus 66 ~~~~q-~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~-ll~ldePt~~~Ld~ 143 (301)
T 2qnr_A 66 TVEIE-ERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC-CFYFISPFGHGLKP 143 (301)
T ss_dssp EEEEC----CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE-EEEEECSSSSSCCH
T ss_pred EEEec-CCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh-eeeeecCcccCCCH
Confidence 11111 0111223345566665211 100 00 1112555665555553 889999987 5998
Q ss_pred hhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 005892 140 EQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (671)
Q Consensus 140 ~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~ 174 (671)
.. . ++++++....++++|++.||+.
T Consensus 144 ~~------~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 144 LD------V----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HH------H----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HH------H----HHHHHHHhcCCEEEEEEeCCCC
Confidence 64 2 5666665545889999999984
No 99
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.11 E-value=4.5e-12 Score=124.58 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=74.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccC-CCcchh-hhhccC---------CCc-----
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEPCTL-IMDLEG---------TDG----- 103 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~-~~~~~~-vld~~g---------~~~----- 103 (671)
|++++|+||||||||||+++|+|+. + ++| +.. .+........ .....+ +.+..| ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~----~-~~G-i~~-~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~ 73 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL----K-SSG-VPV-DGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKR 73 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH----H-HTT-CCC-EEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc----c-cCC-EEE-cCEecchhHhhhceEEEEEEecccceehhhcccccCCcccc
Confidence 5789999999999999999999998 5 666 321 1211110000 000000 001000 000
Q ss_pred ----ccccccchHHHHHHH-HHHH---HHH---HHHhccc--cccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEE---
Q 005892 104 ----RERGEDDTAFEKQSA-LFAL---AVS---DIVLINM--WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM--- 167 (671)
Q Consensus 104 ----~~r~~~~~~~qrQrv-~iAl---AL~---evLlLDE--pt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl--- 167 (671)
...+.....+|++++ ++++ |+. ++||+|| |++.+|+.. ...+.+++. ..+.+||
T Consensus 74 ~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~------~~~l~~~l~----~~~~~ilgti 143 (189)
T 2i3b_A 74 ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF------IQAVRQTLS----TPGTIILGTI 143 (189)
T ss_dssp CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH------HHHHHHHHH----CSSCCEEEEC
T ss_pred ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH------HHHHHHHHh----CCCcEEEEEe
Confidence 011123456777766 3333 234 8999999 777676654 555555544 2233342
Q ss_pred EEecCCCcccccccchhhhhcCCeEEEe
Q 005892 168 FVIRDKTRTPLENLEPVLREDIQKIWDS 195 (671)
Q Consensus 168 ~VtHDl~~~~~~~~~~~ll~~~GkI~~~ 195 (671)
.|+|+.+ ..+.+++..+.+ |+|+..
T Consensus 144 ~vsh~~~--~~~vd~i~~~~~-~~i~~~ 168 (189)
T 2i3b_A 144 PVPKGKP--LALVEEIRNRKD-VKVFNV 168 (189)
T ss_dssp CCCCSSC--CTTHHHHHTTCC-SEEEEC
T ss_pred ecCCCCc--hHHHHHHeecCC-cEEEEe
Confidence 3448875 224556666555 898874
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.10 E-value=3.4e-11 Score=129.53 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=71.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC-CCeeeccCc-eEeccccCCCcchhhhhccCCCcccccccchHHHH
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-KGRSQTTKG-IWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEK 115 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~-sG~~q~~~g-i~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qr 115 (671)
.+|++++|+|||||||||||++|+|+. +|. .|.+.+... +.+.. ......+.. .........+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~----~~~~~~~i~t~ed~~e~~~---~~~~~~v~q------~~~~~~~~~~-- 185 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL----NNTKYHHILTIEDPIEFVH---ESKKCLVNQ------REVHRDTLGF-- 185 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH----HHHCCCEEEEEESSCCSCC---CCSSSEEEE------EEBTTTBSCH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc----cCCCCcEEEEccCcHHhhh---hccccceee------eeeccccCCH--
Confidence 577899999999999999999999998 666 343211100 00000 000000000 0000011111
Q ss_pred HHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhc
Q 005892 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (671)
Q Consensus 116 Qrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~ 188 (671)
.-+++++|. ++|++|||+ |+.. ++.+.++.. .|.++|+++|+.+.+ ..+++++.+..
T Consensus 186 -~~~La~aL~~~PdvillDEp~---d~e~----------~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 186 -SEALRSALREDPDIILVGEMR---DLET----------IRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp -HHHHHHHTTSCCSEEEESCCC---SHHH----------HHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred -HHHHHHHhhhCcCEEecCCCC---CHHH----------HHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 127778887 999999998 4432 333344444 399999999999877 46777776643
No 101
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=99.05 E-value=3.4e-09 Score=116.60 Aligned_cols=308 Identities=16% Similarity=0.168 Sum_probs=184.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcc------------------cCCCCCCCCCeeeccCceEecccc-------CCCcc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGT------------------NFREMDAFKGRSQTTKGIWMARCA-------GIEPC 92 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl------------------~f~~m~p~sG~~q~~~gi~~~~~~-------~~~~~ 92 (671)
.+--+|+|+|+.++|||||||.|+++ -|+++ .|...+|+|||+...+ +....
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~---~~~~~~TkGIWmw~~p~~~~~~~g~~~~ 141 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR---GGSERETTGIQIWSEIFLINKPDGKKVA 141 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCC---CSSSCCCCSEEEESSCEEEECTTSCEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeC---CCCCCcCceEEEecCcccccCCCCCeeE
Confidence 45569999999999999999988643 23221 2334589999997543 22345
Q ss_pred hhhhhccCCCcccccccchHHHHHHHHHHHH--HHHHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCC----cEE
Q 005892 93 TLIMDLEGTDGRERGEDDTAFEKQSALFALA--VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK----TTL 166 (671)
Q Consensus 93 ~~vld~~g~~~~~r~~~~~~~qrQrv~iAlA--L~evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g----~TI 166 (671)
++++|.+|+...++. .+.....||++ |+.++|+|-. ..+|... ...+.-+.++-..+....+ ..+
T Consensus 142 vlllDTEG~~d~~~~-----~~~d~~ifaLa~LLSS~~IyN~~-~~i~~~~---L~~L~~~tel~~~i~~~~~~~~Fp~f 212 (457)
T 4ido_A 142 VLLMDTQGTFDSQST-----LRDSATVFALSTMISSIQVYNLS-QNVQEDD---LQHLQLFTEYGRLAMEETFLKPFQSL 212 (457)
T ss_dssp EEEEEECCBTCTTCC-----HHHHHHHHHHHHHHCSEEEEEEE-SSCCHHH---HHHHHHHHHHHHHHSCCCSSCSEEEE
T ss_pred EEEEeccCCCCcccC-----ccccHHHHHHHHHHhhheeeccc-ccCCHHH---HHHHHHHHHHHHHHhhhcccccCCce
Confidence 788999998876653 12233344444 4499998854 3455433 1123333333222222212 378
Q ss_pred EEEecCCCccccccc-ch---hhhhcCCeEEEecCccccc-CCccccchhcc-cccccccch--------------hhHH
Q 005892 167 MFVIRDKTRTPLENL-EP---VLREDIQKIWDSVPKPQAH-METPLSEFFNV-EVVALSSFE--------------EKEE 226 (671)
Q Consensus 167 l~VtHDl~~~~~~~~-~~---~ll~~~GkI~~~g~~~e~~-~~~~l~~~f~~-~~~~lp~~~--------------~~~~ 226 (671)
+++.+|...-..... .. -++.+.=++ ..|..++.- -...+..+|.. ..+.+|+.. .-.+
T Consensus 213 ~wlvRDf~l~l~~~~g~~t~~eyLe~~L~~-~~g~~~~~~~iR~~I~~~F~~~~Cf~lp~P~~~~~~~~~~~~~l~dL~p 291 (457)
T 4ido_A 213 IFLVRDWSFPYEFSYGADGGAKFLEKRLKV-SGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDD 291 (457)
T ss_dssp EEEEETCCCTTTSCSBHHHHHHHHHHHHCC-CTTSCHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHCTTCCCCGGGSCH
T ss_pred EEEEecCCccccccCCCCCHHHHHHHHhcc-CCCCCHHHHHHHHHHHHhCCCCcEEEcCCCchhhhhchhhhcChhhCCH
Confidence 999999864221000 00 011110000 011111110 01234444432 233344331 1246
Q ss_pred HHHHHHHHhhcccccccC--CCCCCCCCCCccccCCccchhhHHHHHHHhcCCCCCchHHHHHHHhhhHHHHHHHHhhhh
Q 005892 227 LFKEQVASLRQRFYHSVA--PGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFA 304 (671)
Q Consensus 227 ~f~~~v~~L~~~f~~~~~--~~~~~~~~~~~ip~~g~~~~~~~~w~~I~~n~dLdlp~q~~~~a~~rc~ei~~~~~~~~~ 304 (671)
+|.+++..|+..+..+.. +.. -....+....|..++....++|..+.--.+++-=..+|+..|......+++.|.
T Consensus 292 eF~~ql~~l~~~I~~~~~l~~K~---i~G~~vtg~~L~~lv~~Yv~ain~g~vP~~esa~~a~ae~en~~Av~~A~~~Y~ 368 (457)
T 4ido_A 292 EFIKNLKILIPWLLSPESLDIKE---INGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYN 368 (457)
T ss_dssp HHHHHHHHHHHHHHSTTTCCCCE---ETTEECBHHHHHHHHHHHHHHHHSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccc---cCCEeecHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999985432 221 122335555788889999999887766667777788999999999999998875
Q ss_pred hhhhHHHHHHHHhc-CC---cchHHHHHHHHHHHHhhchhhhhcccchHhHHHHHHHHHHHHHHHH
Q 005892 305 ANEEWCELEAAVQS-GP---ISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLV 366 (671)
Q Consensus 305 ~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~yd~~a~~y~~~v~~~kr~~L~~~~~~~~ 366 (671)
. .+.+.+.. -| .++|-..-....++|++.|+..+....++++++-+.+|...|....
T Consensus 369 ~-----~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~~~~~~~L~~~l~~~~ 429 (457)
T 4ido_A 369 K-----KMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELY 429 (457)
T ss_dssp H-----HHHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4 23333321 12 2358888899999999999987767788888888888887776553
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.04 E-value=1.9e-10 Score=123.48 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=88.0
Q ss_pred ccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCc-eEeccccCC--CcchhhhhccCCCccc---
Q 005892 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMARCAGI--EPCTLIMDLEGTDGRE--- 105 (671)
Q Consensus 32 ~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~g-i~~~~~~~~--~~~~~vld~~g~~~~~--- 105 (671)
+.++ .+|++++|+||||||||||+++|+|..- .+|+.|. ..+. +++...... ..+..+....+++...
T Consensus 125 ~ggi--~~G~i~~I~G~~GsGKTTL~~~l~~~~~--~~~~~Gg--~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ 198 (349)
T 1pzn_A 125 GGGI--ETQAITEVFGEFGSGKTQLAHTLAVMVQ--LPPEEGG--LNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLK 198 (349)
T ss_dssp TSSE--ESSEEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTS--CSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGG
T ss_pred cCCC--CCCeEEEEECCCCCCHHHHHHHHHHHhc--cchhcCC--CCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhh
Confidence 5678 8999999999999999999999999861 1244430 0011 344332111 1111222222222110
Q ss_pred c----cccchHHHHHHHHHHHHHH----------HHHhccccccCCChhhh-h-Ch----hHHHHHHHHHHHhhCCCCcE
Q 005892 106 R----GEDDTAFEKQSALFALAVS----------DIVLINMWCHDIGREQA-A-NK----PLLKTVFQVMMRLFSPRKTT 165 (671)
Q Consensus 106 r----~~~~~~~qrQrv~iAlAL~----------evLlLDEpt~~LD~~~~-~-~~----~~~~~v~ell~~L~~~~g~T 165 (671)
. .......+.+++.++.+++ ++|++|||++.+|+... . +. .....++..|.++.++.|+|
T Consensus 199 ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~t 278 (349)
T 1pzn_A 199 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA 278 (349)
T ss_dssp GEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 0 0011344677777776665 47899999999987521 0 11 12456667777776667999
Q ss_pred EEEEecCCCcccccccchhhhhcCCeEEEecC
Q 005892 166 LMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (671)
Q Consensus 166 Il~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~ 197 (671)
+|+++|........+.+...... |++|..+.
T Consensus 279 vii~~h~~~~~~~~~~~~~~~~~-G~~l~~~~ 309 (349)
T 1pzn_A 279 VFVTNQVQARPDAFFGDPTRPIG-GHILAHSA 309 (349)
T ss_dssp EEEEEECC----------------CCCCCTTC
T ss_pred EEEEcccccccccccCCccccCC-cceEeecC
Confidence 99999987644322233333444 77776655
No 103
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=3.7e-11 Score=131.87 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=79.6
Q ss_pred ceEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe--e----eccCce
Q 005892 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR--S----QTTKGI 81 (671)
Q Consensus 8 ~~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~--~----q~~~gi 81 (671)
.+|.+.|+++.|+. ..++.++++.+ +|+||||||||||+|+|+|+.+ |..|. . ..+.++
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I--------~lvG~sGaGKSTLln~L~g~~~----~~~~~~~~~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL--------MVVGESGLGKSTLINSLFLTDL----YSPEYPGPSHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE--------EEECCTTSSHHHHHHHHTTCCC----CCCCCCSCC-----CCEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE--------EEECCCCCcHHHHHHHHhCCCC----CCCCCCCcccCCccceee
Confidence 46999999999964 36788887763 9999999999999999999984 32221 0 001111
Q ss_pred Eecc----ccCCCcchhhhhccCCCcccccc------------cchHHHHHHHHHHHHHH---H---HHhccccc-cCCC
Q 005892 82 WMAR----CAGIEPCTLIMDLEGTDGRERGE------------DDTAFEKQSALFALAVS---D---IVLINMWC-HDIG 138 (671)
Q Consensus 82 ~~~~----~~~~~~~~~vld~~g~~~~~r~~------------~~~~~qrQrv~iAlAL~---e---vLlLDEpt-~~LD 138 (671)
...+ ..+......+.|..|+....... ....++++++.+|++++ + +|++|||| ++||
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~ 154 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 154 (418)
T ss_dssp EEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC
Confidence 0000 01111233456666654321100 01234566777888876 5 89999999 7999
Q ss_pred hhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcc
Q 005892 139 REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 139 ~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
+.. . +++..+. . ++++|+|.|-.+..
T Consensus 155 ~~d------~----~~lk~L~-~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 155 PLD------I----EFMKRLH-E-KVNIIPLIAKADTL 180 (418)
T ss_dssp HHH------H----HHHHHHT-T-TSEEEEEEESTTSS
T ss_pred HHH------H----HHHHHHh-c-cCcEEEEEEcccCc
Confidence 754 2 4455554 3 78999999988764
No 104
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.00 E-value=1.7e-10 Score=112.85 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=72.8
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccC-CCCCCCCCeeecc------Cce
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF-REMDAFKGRSQTT------KGI 81 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f-~~m~p~sG~~q~~------~gi 81 (671)
+|+++|+++.|+. .++.+ +.. .+|..++|+|+||||||||+|.|+|..| ..-.|+.|..... .+.
T Consensus 3 ~l~~~~~~~~~~~----~~l~~--~~~--~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~ 74 (210)
T 1pui_A 3 NLNYQQTHFVMSA----PDIRH--LPS--DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 74 (210)
T ss_dssp --------CEEEE----SSGGG--SSC--SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE
T ss_pred chhhhhhhheeec----CCHhH--CCC--CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCE
Confidence 5899999999952 34444 666 7888999999999999999999999862 1113566652210 111
Q ss_pred EeccccCCC---------------------------cchhhhhc-----------------cCCCcc---cccccchHHH
Q 005892 82 WMARCAGIE---------------------------PCTLIMDL-----------------EGTDGR---ERGEDDTAFE 114 (671)
Q Consensus 82 ~~~~~~~~~---------------------------~~~~vld~-----------------~g~~~~---~r~~~~~~~q 114 (671)
.+....+.. ...++.|. .+.+.. .........|
T Consensus 75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA 154 (210)
T ss_dssp EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH
T ss_pred EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh
Confidence 111111100 00011111 111100 0001123447
Q ss_pred HHH-HHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCC
Q 005892 115 KQS-ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (671)
Q Consensus 115 rQr-v~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~ 161 (671)
+|+ +..+++++ ..+++|||++++|+.+ ...+++.+.++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~------~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 155 RKAQLNMVREAVLAFNGDVQVETFSSLKKQG------VDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHHGGGCSCEEEEECBTTTTBS------HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeecCCCC------HHHHHHHHHHHHhh
Confidence 787 67777777 3468899999999998 99999999888654
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.00 E-value=8.6e-11 Score=123.78 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=72.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------------------ce-EeccccCCCcc------
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------------------GI-WMARCAGIEPC------ 92 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------------------gi-~~~~~~~~~~~------ 92 (671)
+|++++|+||||||||||+++|+|+. .|++|++...+ ++ ++....+..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll----~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~ 176 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY----QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDA 176 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH----HTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH----HhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH
Confidence 68999999999999999999999999 78888732110 00 01100010110
Q ss_pred ----------hhhhhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhh
Q 005892 93 ----------TLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF 159 (671)
Q Consensus 93 ----------~~vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~ 159 (671)
..++|..|...... ......++|++++|++++ +.+++ .||+.. ...+++.+..+.
T Consensus 177 v~~~~~~~~d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t------~~~~~~~~~~~~ 244 (304)
T 1rj9_A 177 VQAMKARGYDLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT------GQNGLEQAKKFH 244 (304)
T ss_dssp HHHHHHHTCSEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB------CTHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH------HHHHHHHHHHHH
Confidence 01123223221111 112345789999999887 32222 455544 445666666665
Q ss_pred CCCCcEEEEEecCCCcc
Q 005892 160 SPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 160 ~~~g~TIl~VtHDl~~~ 176 (671)
+..|.|+|++||+.+.+
T Consensus 245 ~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHCCSEEEEECTTSSC
T ss_pred HHcCCcEEEEECCcccc
Confidence 54589999999996543
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.96 E-value=2.3e-10 Score=110.15 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=68.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHH
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS 117 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQr 117 (671)
.+|+.++|+||||+|||||+++|+|.. .|..|.. .+++... . +.-...... ..... +
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~----~~~~g~~----~~~~~~~----~--~~~~~~~~~--~~~~~------~- 92 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI----YEKKGIR----GYFFDTK----D--LIFRLKHLM--DEGKD------T- 92 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH----HHHSCCC----CCEEEHH----H--HHHHHHHHH--HHTCC------S-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH----HHHcCCe----EEEEEHH----H--HHHHHHHHh--cCchH------H-
Confidence 568899999999999999999999998 4566631 1111110 0 000000000 00000 0
Q ss_pred HHHHHHHH--HHHhcccccc-CCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Q 005892 118 ALFALAVS--DIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (671)
Q Consensus 118 v~iAlAL~--evLlLDEpt~-~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~ 175 (671)
.+...+. ++|++|||++ ++|+.. +..+++++.....+ |+++|++||....
T Consensus 93 -~~~~~~~~~~llilDE~~~~~~~~~~------~~~l~~ll~~~~~~-~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 93 -KFLKTVLNSPVLVLDDLGSERLSDWQ------RELISYIITYRYNN-LKSTIITTNYSLQ 145 (180)
T ss_dssp -HHHHHHHTCSEEEEETCSSSCCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCCSC
T ss_pred -HHHHHhcCCCEEEEeCCCCCcCCHHH------HHHHHHHHHHHHHc-CCCEEEEcCCChh
Confidence 1111222 8999999985 888877 88888888877654 8999999998844
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.95 E-value=2.3e-10 Score=112.81 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=74.6
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCC--cchhhhhccCCCccc-----c
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRE-----R 106 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~--~~~~vld~~g~~~~~-----r 106 (671)
++ .+|++++|+||||||||||++.|++ . +. +. .+++....... .........+..... .
T Consensus 16 gi--~~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~-~~-----v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
T 2cvh_A 16 GF--APGVLTQVYGPYASGKTTLALQTGL-L-----SG-KK-----VAYVDTEGGFSPERLVQMAETRGLNPEEALSRFI 81 (220)
T ss_dssp SB--CTTSEEEEECSTTSSHHHHHHHHHH-H-----HC-SE-----EEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEE
T ss_pred CC--cCCEEEEEECCCCCCHHHHHHHHHH-H-----cC-Cc-----EEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEE
Confidence 56 7889999999999999999999999 3 22 21 12332211000 011111111211100 0
Q ss_pred cccchH--HHHHHHHHHHHHH----HHHhccccccCCChhhhh--ChhHHHHHHHHHHHhhCCCCcEEEEEecCCC
Q 005892 107 GEDDTA--FEKQSALFALAVS----DIVLINMWCHDIGREQAA--NKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (671)
Q Consensus 107 ~~~~~~--~qrQrv~iAlAL~----evLlLDEpt~~LD~~~~~--~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~ 174 (671)
...... -+++++..+++++ ++|++|||++.+|+.... .......+++.|+++.++.|+|+|+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 000111 2355666666665 689999999999875311 1122355666677776666899999999875
No 108
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.93 E-value=6.6e-12 Score=132.77 Aligned_cols=116 Identities=13% Similarity=0.037 Sum_probs=70.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhcc------CCCc--------
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLE------GTDG-------- 103 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~------g~~~-------- 103 (671)
.+|+++||+||||||||||+++|+|++ .|..|... -++..... ...+. .+.+.. |.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll----~~~~G~~~--v~~v~qd~-~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~ 159 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL----ARWDHHPR--VDLVTTDG-FLYPN-AELQRRNLMHRKGFPESYNRRALM 159 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH----HTSTTCCC--EEEEEGGG-GBCCH-HHHHHTTCTTCTTSGGGBCHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc----cccCCCCe--EEEEecCc-cCCcc-cHHHHHHHHHhcCCChHHHHHHHH
Confidence 789999999999999999999999999 67766310 01111110 00000 111111 1100
Q ss_pred ---------c--cccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEE
Q 005892 104 ---------R--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFV 169 (671)
Q Consensus 104 ---------~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~V 169 (671)
. ......+.+|+||+.+|++++ ++||+|||+..+|+.. . .+.++. + ..|+|
T Consensus 160 ~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~---~--------~l~~~~---D-~~I~V 224 (312)
T 3aez_A 160 RFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT---L--------MVSDLF---D-FSLYV 224 (312)
T ss_dssp HHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS---C--------CGGGGC---S-EEEEE
T ss_pred HHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch---H--------HHHHhc---C-cEEEE
Confidence 0 111223456999999998887 9999999999987522 0 122222 3 35788
Q ss_pred ecCCCcc
Q 005892 170 IRDKTRT 176 (671)
Q Consensus 170 tHDl~~~ 176 (671)
+|+.+..
T Consensus 225 ~a~~~~~ 231 (312)
T 3aez_A 225 DARIEDI 231 (312)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 8877544
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.92 E-value=3.3e-10 Score=134.83 Aligned_cols=88 Identities=9% Similarity=0.000 Sum_probs=78.1
Q ss_pred cccchHHHHHHHHHHHHHH---H--HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 107 GEDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 107 ~~~~~~~qrQrv~iAlAL~---e--vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
....+++|+|||.||++|+ + +|||||||++||+.. ...++++|++|.+. |.|||+||||++.+.. ||
T Consensus 462 ~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~------~~~l~~~L~~L~~~-G~TvivVtHd~~~~~~-aD 533 (916)
T 3pih_A 462 ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRD------TERLIKTLKKLRDL-GNTVIVVEHDEEVIRN-AD 533 (916)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGG------HHHHHHHHHHTTTT-TCEEEEECCCHHHHHT-CS
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHh-CC
Confidence 3456889999999999999 4 999999999999999 99999999999765 9999999999987754 89
Q ss_pred chhhh------hcCCeEEEecCcccccC
Q 005892 182 EPVLR------EDIQKIWDSVPKPQAHM 203 (671)
Q Consensus 182 ~~~ll------~~~GkI~~~g~~~e~~~ 203 (671)
+++++ .+ |+|+..|++++++.
T Consensus 534 ~ii~lgpgag~~~-G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 534 HIIDIGPGGGTNG-GRVVFQGTVDELLK 560 (916)
T ss_dssp EEEEEESSSGGGC-SEEEEEECHHHHHH
T ss_pred EEEEEcCCcccCC-CEEEEeechhhhhc
Confidence 98888 55 99999999988764
No 110
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.92 E-value=9.4e-11 Score=126.19 Aligned_cols=159 Identities=17% Similarity=0.081 Sum_probs=90.2
Q ss_pred cccccccccccCC--ccEEEEEcCCCCChHHHHHHHhcccCCCCCCCC----Ceeecc---CceEeccc-cCCCcchhhh
Q 005892 27 FIKEVKLSDCGLS--YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK----GRSQTT---KGIWMARC-AGIEPCTLIM 96 (671)
Q Consensus 27 vl~~v~l~~~g~~--geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~s----G~~q~~---~gi~~~~~-~~~~~~~~vl 96 (671)
+...|++.+ .+ |+.++|+||||||||||+++|+|+. +|++ |++... .+..+... .....+.++.
T Consensus 157 ~~~~v~~~v--~~~lg~k~~IvG~nGsGKSTLlk~L~gl~----~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~ 230 (365)
T 1lw7_A 157 YWKFIPKEA--RPFFAKTVAILGGESSGKSVLVNKLAAVF----NTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGH 230 (365)
T ss_dssp GGGGSCTTT--GGGTCEEEEEECCTTSHHHHHHHHHHHHT----TCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHH
T ss_pred ChhhCCHHH--HHhhhCeEEEECCCCCCHHHHHHHHHHHh----CCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHH
Confidence 445678888 78 9999999999999999999999998 7888 753210 01000000 0000011110
Q ss_pred -----------hcc---CCCccc-ccccchHHHHHHHHHHHHHH----HHHhccc---cc------cCCChhhhhChhHH
Q 005892 97 -----------DLE---GTDGRE-RGEDDTAFEKQSALFALAVS----DIVLINM---WC------HDIGREQAANKPLL 148 (671)
Q Consensus 97 -----------d~~---g~~~~~-r~~~~~~~qrQrv~iAlAL~----evLlLDE---pt------~~LD~~~~~~~~~~ 148 (671)
+.. +.+... .......+++++..++.++. +++++|| |+ .++|+.+ +
T Consensus 231 q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~------r 304 (365)
T 1lw7_A 231 QRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQ------R 304 (365)
T ss_dssp HHHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCS------H
T ss_pred HHHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHH------H
Confidence 000 000000 00011123445555555542 7888899 65 3567766 8
Q ss_pred HHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhhhcCCeEEEecCcccc
Q 005892 149 KTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 149 ~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
..+.+.+.++.++.|.++|+++|. ....++++.+.++.+ +...+++.++
T Consensus 305 ~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~---~l~~~~~~~~ 353 (365)
T 1lw7_A 305 QQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK---VLNEEEISEL 353 (365)
T ss_dssp HHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH---HTSCCCCSSC
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH---HhcccchhHh
Confidence 999999988765558899999975 455555666665543 4555555544
No 111
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.88 E-value=9.2e-10 Score=113.75 Aligned_cols=129 Identities=11% Similarity=0.040 Sum_probs=73.1
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeec------cCce-EeccccCCCcc---h--h-------
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT------TKGI-WMARCAGIEPC---T--L------- 94 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~------~~gi-~~~~~~~~~~~---~--~------- 94 (671)
++ .+|++++|+||||||||||++.|+|.. . .|+... ...+ ++......... . +
T Consensus 26 gl--~~G~i~~i~G~~GsGKTtl~~~l~~~~----~--~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~ 97 (279)
T 1nlf_A 26 NM--VAGTVGALVSPGGAGKSMLALQLAAQI----A--GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAE 97 (279)
T ss_dssp TE--ETTSEEEEEESTTSSHHHHHHHHHHHH----H--TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHH
T ss_pred Cc--cCCCEEEEEcCCCCCHHHHHHHHHHHH----h--cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChh
Confidence 56 789999999999999999999999865 2 221100 0111 22111000000 0 0
Q ss_pred ----hhhccCCCcc--cccccchHHHHHHHHHHHHHH---HHHhcccccc--CCChhhhhChhHHHHHHHHHHHhhCCCC
Q 005892 95 ----IMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCH--DIGREQAANKPLLKTVFQVMMRLFSPRK 163 (671)
Q Consensus 95 ----vld~~g~~~~--~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~--~LD~~~~~~~~~~~~v~ell~~L~~~~g 163 (671)
+++..++... .........|.+++ ++++ ++|++|||++ ++|... +.....++..|.++.++.|
T Consensus 98 ~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~---~~~~~~~~~~L~~l~~~~g 171 (279)
T 1nlf_A 98 ERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENA---SGPMAQVIGRMEAIAADTG 171 (279)
T ss_dssp HHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTC---HHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCc---hHHHHHHHHHHHHHHHHcC
Confidence 0111111110 01112234455544 4555 8999999999 887643 1224778888888865569
Q ss_pred cEEEEEecCCCcc
Q 005892 164 TTLMFVIRDKTRT 176 (671)
Q Consensus 164 ~TIl~VtHDl~~~ 176 (671)
+|||+++|+....
T Consensus 172 ~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 172 CSIVFLHHASKGA 184 (279)
T ss_dssp CEEEEEEEC----
T ss_pred CEEEEEecCCCcc
Confidence 9999999998654
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.86 E-value=1.3e-09 Score=108.89 Aligned_cols=137 Identities=11% Similarity=0.126 Sum_probs=66.6
Q ss_pred cccccCCccEEEEEcCCCCChHHHHHHHhc--ccCCCCCCCCCeeeccCceEeccccCCCc--chhhhhccCCCcc---c
Q 005892 33 LSDCGLSYAVVSIMGPQSSGKSTLLNHLFG--TNFREMDAFKGRSQTTKGIWMARCAGIEP--CTLIMDLEGTDGR---E 105 (671)
Q Consensus 33 l~~~g~~geivaIlGpNGSGKSTLLn~L~G--l~f~~m~p~sG~~q~~~gi~~~~~~~~~~--~~~vld~~g~~~~---~ 105 (671)
-++ .+|++++|+||||||||||++.|+| +. +|..|.. ..+.+++........ ........|.... +
T Consensus 19 ggi--~~G~~~~i~G~~GsGKTtl~~~l~~~~~~----~~~~g~~-~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~ 91 (243)
T 1n0w_A 19 GGI--ETGSITEMFGEFRTGKTQICHTLAVTCQL----PIDRGGG-EGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLD 91 (243)
T ss_dssp TSE--ETTSEEEEECCTTSSHHHHHHHHHHHTTS----CGGGTCC-SSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCC--cCCeEEEEECCCCCcHHHHHHHHHHHHhC----chhcCCC-CCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhh
Confidence 356 7899999999999999999999999 44 3421100 011234433211000 1111111222210 0
Q ss_pred c---cccchHHH-HHHHHHHHHHH-----HHHhccccccCCChhhhh--C----hhHHHHHHHHHHHhhCCCCcEEEEEe
Q 005892 106 R---GEDDTAFE-KQSALFALAVS-----DIVLINMWCHDIGREQAA--N----KPLLKTVFQVMMRLFSPRKTTLMFVI 170 (671)
Q Consensus 106 r---~~~~~~~q-rQrv~iAlAL~-----evLlLDEpt~~LD~~~~~--~----~~~~~~v~ell~~L~~~~g~TIl~Vt 170 (671)
. .......+ .+.+.-+..++ ++|++|+|++.+++.-.. + ......++..+.++.++.|+|||+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~ 171 (243)
T 1n0w_A 92 NVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITN 171 (243)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred CeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 0 00001111 11111122222 688999999998864100 0 11244566666666666699999999
Q ss_pred cCCCcc
Q 005892 171 RDKTRT 176 (671)
Q Consensus 171 HDl~~~ 176 (671)
|.....
T Consensus 172 h~~~~~ 177 (243)
T 1n0w_A 172 QVVAQV 177 (243)
T ss_dssp ------
T ss_pred eeeecC
Confidence 977543
No 113
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.85 E-value=1.6e-09 Score=102.36 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=61.8
Q ss_pred cccchHHHHHHHHHH------HHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccc
Q 005892 107 GEDDTAFEKQSALFA------LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (671)
Q Consensus 107 ~~~~~~~qrQrv~iA------lAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~ 177 (671)
....+++|+||+++| ++++ +++++||||++||+.. +..+.+.+.++.+. |.|||+||||+ .+.
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiiivsH~~-~~~ 126 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER------RRKLITIMERYLKK-IPQVILVSHDE-ELK 126 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHH------HHHHHHHHHHTGGG-SSEEEEEESCG-GGG
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHH------HHHHHHHHHHHHcc-CCEEEEEEChH-HHH
Confidence 345689999999886 5666 8999999999999998 99999999998765 89999999999 455
Q ss_pred ccccchhhhh
Q 005892 178 LENLEPVLRE 187 (671)
Q Consensus 178 ~~~~~~~ll~ 187 (671)
..|++++++.
T Consensus 127 ~~~d~ii~l~ 136 (148)
T 1f2t_B 127 DAADHVIRIS 136 (148)
T ss_dssp GGCSEEEEEE
T ss_pred HhCCEEEEEE
Confidence 6788877773
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.83 E-value=2.3e-10 Score=114.92 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++|++++|+||||||||||+++|+|+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 688999999999999999999999998
No 115
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.82 E-value=1.2e-09 Score=118.12 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=70.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCC-CCeeeccCc-eEeccccCCCcchhhhh-ccCCCcccccccchHHH
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-KGRSQTTKG-IWMARCAGIEPCTLIMD-LEGTDGRERGEDDTAFE 114 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~-sG~~q~~~g-i~~~~~~~~~~~~~vld-~~g~~~~~r~~~~~~~q 114 (671)
.+|++++|+|||||||||||++|+|+. +|. +|++.+... +.+. ......++.. ..|... ..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~----~~~~~g~I~~~e~~~e~~---~~~~~~~v~Q~~~g~~~-------~~~- 198 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI----NQTKSYHIITIEDPIEYV---FKHKKSIVNQREVGEDT-------KSF- 198 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH----HHHSCCEEEEEESSCCSC---CCCSSSEEEEEEBTTTB-------SCS-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc----CcCCCcEEEEecccHhhh---hccCceEEEeeecCCCH-------HHH-
Confidence 678999999999999999999999998 676 786422111 0000 0000000100 011110 111
Q ss_pred HHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhhh
Q 005892 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (671)
Q Consensus 115 rQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ll 186 (671)
+.+++.++. ++|++|||+ |+.. +..++... . .|.+++.++|+.+ +...+++++.+
T Consensus 199 --~~~l~~~L~~~pd~illdE~~---d~e~---------~~~~l~~~-~-~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 --ADALRAALREDPDVIFVGEMR---DLET---------VETALRAA-E-TGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp --HHHHHHHTTSCCSEEEESCCC---SHHH---------HHHHHHHH-T-TTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred --HHHHHHHhhhCcCEEEECCCC---CHHH---------HHHHHHHH-h-cCCEEEEEECcch-HHHHHHHHHHh
Confidence 456666766 899999998 5443 33334433 3 4889999999966 55566666555
No 116
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.82 E-value=1.4e-09 Score=128.93 Aligned_cols=89 Identities=8% Similarity=-0.019 Sum_probs=78.0
Q ss_pred ccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 108 EDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
...+++|+||+.||.+|+ +++||||||++||+.. ...++++|++|.+ .|.|||+|+||++++. .||+
T Consensus 503 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~------~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~-~ADr 574 (972)
T 2r6f_A 503 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD------NDRLIATLKSMRD-LGNTLIVVEHDEDTML-AADY 574 (972)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGG------HHHHHHHHHHHHT-TTCEEEEECCCHHHHH-SCSE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHH------HHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCE
Confidence 456788999999999998 4899999999999999 9999999999975 5999999999998765 5899
Q ss_pred hhhhh-----cCCeEEEecCcccccCC
Q 005892 183 PVLRE-----DIQKIWDSVPKPQAHME 204 (671)
Q Consensus 183 ~~ll~-----~~GkI~~~g~~~e~~~~ 204 (671)
+++|. +.|+|+..|++.++...
T Consensus 575 Ii~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 575 LIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp EEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred EEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 98882 34999999999887653
No 117
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.82 E-value=1.1e-11 Score=122.30 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHH---HHHhccccccC-------CChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 005892 114 EKQSALFALAVS---DIVLINMWCHD-------IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEpt~~-------LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl 173 (671)
|+|++.++.+++ .++++|||+++ ||+.. ...+.+.+.+....+|.|+++++|++
T Consensus 98 ~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~------~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 98 RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADA------DERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCH------HHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCH------HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 345677776666 78888999998 77765 77788888776434588999999985
No 118
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.79 E-value=3.4e-10 Score=107.96 Aligned_cols=54 Identities=19% Similarity=0.090 Sum_probs=45.1
Q ss_pred EEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee
Q 005892 12 LIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (671)
Q Consensus 12 i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (671)
..++++.|+. ..++.++++.+ .+|++++|+||||||||||+|+|+|++ |++|++
T Consensus 10 ~~~~~~~~g~---~~~l~~vsl~i--~~Ge~v~L~G~nGaGKTTLlr~l~g~l-----~~~G~V 63 (158)
T 1htw_A 10 DEFSMLRFGK---KFAEILLKLHT--EKAIMVYLNGDLGAGKTTLTRGMLQGI-----GHQGNV 63 (158)
T ss_dssp SHHHHHHHHH---HHHHHHHHHCC--SSCEEEEEECSTTSSHHHHHHHHHHHT-----TCCSCC
T ss_pred CHHHHHHHHH---HHHHhcccccc--CCCCEEEEECCCCCCHHHHHHHHHHhC-----CCCCeE
Confidence 3455667743 35788899999 999999999999999999999999998 677853
No 119
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=3.1e-09 Score=100.12 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=60.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHH
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 118 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv 118 (671)
+|+.++|+||||||||||+++|+|.. .+ .|.. .+++... +....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~----~~-~g~~----~~~~~~~----------~~~~~----------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA----LE-AGKN----AAYIDAA----------SMPLT----------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH----HT-TTCC----EEEEETT----------TSCCC-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----Hh-cCCc----EEEEcHH----------HhhHH-----------------
Confidence 67899999999999999999999988 44 4621 1233221 00000
Q ss_pred HHHHHHHHHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcE-EEEEecCC
Q 005892 119 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDK 173 (671)
Q Consensus 119 ~iAlAL~evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~T-Il~VtHDl 173 (671)
.+. .=.++|++|||+. ++... ...+++++..+... |.+ +|+++|..
T Consensus 79 ~~~-~~~~lLilDE~~~-~~~~~------~~~l~~li~~~~~~-g~~~iiits~~~ 125 (149)
T 2kjq_A 79 DAA-FEAEYLAVDQVEK-LGNEE------QALLFSIFNRFRNS-GKGFLLLGSEYT 125 (149)
T ss_dssp GGG-GGCSEEEEESTTC-CCSHH------HHHHHHHHHHHHHH-TCCEEEEEESSC
T ss_pred HHH-hCCCEEEEeCccc-cChHH------HHHHHHHHHHHHHc-CCcEEEEECCCC
Confidence 000 0028999999976 66554 77888988887654 677 88888854
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=1.8e-09 Score=118.42 Aligned_cols=50 Identities=28% Similarity=0.298 Sum_probs=40.1
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccE--EEEEcCCCCChHHHHHHHhcccC
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAV--VSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~gei--vaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.+++.+ ++.|++. . +.++++.+ .+|++ ++|+||||||||||||+|+|+.+
T Consensus 16 ~l~~~~-~~~y~~~---~-L~~vsl~i--~~Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 16 TVPLAG-HVGFDSL---P-DQLVNKSV--SQGFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSC--C-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eEEEee-EEEECCe---e-cCCCceEe--cCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 466777 8888542 4 88999999 99999 99999999999999999999863
No 121
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.72 E-value=4.1e-09 Score=124.45 Aligned_cols=90 Identities=12% Similarity=-0.041 Sum_probs=77.8
Q ss_pred cccchHHHHHHHHHHHHHH---H--HHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccccc
Q 005892 107 GEDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (671)
Q Consensus 107 ~~~~~~~qrQrv~iAlAL~---e--vLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~ 181 (671)
....+++|+|||.||.+|+ + ++||||||++||+.. ...+++++.+|.. .|.|||+|+||++.+. .||
T Consensus 377 ~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~------~~~L~~~l~~L~~-~G~TVIvVeHdl~~l~-~aD 448 (842)
T 2vf7_A 377 TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD------TEALLSALENLKR-GGNSLFVVEHDLDVIR-RAD 448 (842)
T ss_dssp GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG------HHHHHHHHHHHHT-TTCEEEEECCCHHHHT-TCS
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH------HHHHHHHHHHHHH-cCCEEEEEcCCHHHHH-hCC
Confidence 3456789999999999999 2 899999999999999 9999999999976 4999999999998654 688
Q ss_pred chhhhh-----cCCeEEEecCcccccCC
Q 005892 182 EPVLRE-----DIQKIWDSVPKPQAHME 204 (671)
Q Consensus 182 ~~~ll~-----~~GkI~~~g~~~e~~~~ 204 (671)
+++++. +.|+++..|+++++...
T Consensus 449 ~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 449 WLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp EEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred EEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 988882 34999999999887643
No 122
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.72 E-value=2.2e-09 Score=127.76 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=76.7
Q ss_pred ccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 108 EDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
...+++|+||+.||.+|+ +++||||||++||+.. ...++++|++|.+ .|.|||+|+||++++. .||+
T Consensus 520 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~------~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~-~ADr 591 (993)
T 2ygr_A 520 ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRD------NRRLIETLTRLRD-LGNTLIVVEHDEDTIE-HADW 591 (993)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHH------HHHHHHHHHHHHH-TTCEEEEECCCHHHHH-TCSE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHH------HHHHHHHHHHHHH-cCCEEEEECCCHHHHH-hCCE
Confidence 455788999999999998 4899999999999998 9999999999976 4999999999998765 6899
Q ss_pred hhhhh-----cCCeEEEecCcccccC
Q 005892 183 PVLRE-----DIQKIWDSVPKPQAHM 203 (671)
Q Consensus 183 ~~ll~-----~~GkI~~~g~~~e~~~ 203 (671)
+++|. +.|+++..|++.++..
T Consensus 592 Ii~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 592 IVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EEEecCccccCCCEEEEeeCHHHhhh
Confidence 98882 3499999999887654
No 123
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.72 E-value=5.1e-09 Score=111.38 Aligned_cols=117 Identities=12% Similarity=0.112 Sum_probs=69.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccC-------------------ce-EeccccCCCcchhh--
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------------------GI-WMARCAGIEPCTLI-- 95 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~-------------------gi-~~~~~~~~~~~~~v-- 95 (671)
.+|++++|+||||||||||+++|+|+. .|..|++.... ++ ++....+..+...+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l----~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL----KNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH----HHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH----HhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 679999999999999999999999998 78888632110 10 01100111111111
Q ss_pred --------------hhccCCCcccccccchHHHHHHHHHHHHHHHHHhccccccCCChhhhhChhHHHHHHHHHHHhhCC
Q 005892 96 --------------MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (671)
Q Consensus 96 --------------ld~~g~~~~~r~~~~~~~qrQrv~iAlAL~evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~ 161 (671)
+|..|.... ....+.+... ++.++..|||+..||+.. ...+.+.++.+.+.
T Consensus 203 ~l~~~~~~~~d~vliDtaG~~~~-----~~~l~~eL~~----i~ral~~de~llvLDa~t------~~~~~~~~~~~~~~ 267 (328)
T 3e70_C 203 AIQHAKARGIDVVLIDTAGRSET-----NRNLMDEMKK----IARVTKPNLVIFVGDALA------GNAIVEQARQFNEA 267 (328)
T ss_dssp HHHHHHHHTCSEEEEEECCSCCT-----TTCHHHHHHH----HHHHHCCSEEEEEEEGGG------TTHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHhhccchhH-----HHHHHHHHHH----HHHHhcCCCCEEEEecHH------HHHHHHHHHHHHHh
Confidence 111111110 0111222222 335667899988888776 55677777777655
Q ss_pred CCcEEEEEecCC
Q 005892 162 RKTTLMFVIRDK 173 (671)
Q Consensus 162 ~g~TIl~VtHDl 173 (671)
.+.|+|++||.-
T Consensus 268 ~~it~iilTKlD 279 (328)
T 3e70_C 268 VKIDGIILTKLD 279 (328)
T ss_dssp SCCCEEEEECGG
T ss_pred cCCCEEEEeCcC
Confidence 689999999954
No 124
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.61 E-value=4.2e-09 Score=114.55 Aligned_cols=65 Identities=9% Similarity=-0.031 Sum_probs=51.4
Q ss_pred HHHHHhccccccCCChhhhhChhHHHHHHHHHHHh-hCCCCcEEEEEecCCCcccccccchh-hhhcCC-eEEEecCc
Q 005892 124 VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL-FSPRKTTLMFVIRDKTRTPLENLEPV-LREDIQ-KIWDSVPK 198 (671)
Q Consensus 124 L~evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L-~~~~g~TIl~VtHDl~~~~~~~~~~~-ll~~~G-kI~~~g~~ 198 (671)
+-+++++|||+.++|+.. +...++.+..+ .+ .|.|++ +|++..+...|+++. ++.+ | +++..|+.
T Consensus 141 ~~di~ildeel~~~D~~~------~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~-G~~~~~~~~~ 208 (392)
T 1ni3_A 141 IRDLSIIVDELLIKDAEF------VEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTE-TKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHT-TCSCGGGSCC
T ss_pred chhhhhchhhhHHHHHHH------HHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhcc-CCceeecCCC
Confidence 348999999999999887 88888888887 54 477764 999988888888887 7777 9 88765543
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.61 E-value=9.2e-09 Score=110.73 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=77.2
Q ss_pred cccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccc
Q 005892 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE 108 (671)
Q Consensus 29 ~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~ 108 (671)
.++++.+ .+|++++|+||||||||||+|+|+|+. +|+.|.+...+...+..........++. .....
T Consensus 166 ~~l~~~i--~~G~~i~ivG~sGsGKSTll~~l~~~~----~~~~g~I~ie~~~e~~~~~~~~~v~~v~-------~q~~~ 232 (361)
T 2gza_A 166 SFLRRAV--QLERVIVVAGETGSGKTTLMKALMQEI----PFDQRLITIEDVPELFLPDHPNHVHLFY-------PSEAK 232 (361)
T ss_dssp HHHHHHH--HTTCCEEEEESSSSCHHHHHHHHHTTS----CTTSCEEEEESSSCCCCTTCSSEEEEEC-------C----
T ss_pred HHHHHHH--hcCCEEEEECCCCCCHHHHHHHHHhcC----CCCceEEEECCccccCccccCCEEEEee-------cCccc
Confidence 7888888 899999999999999999999999999 7888853211100000000000000000 00000
Q ss_pred cc-hHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchh
Q 005892 109 DD-TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (671)
Q Consensus 109 ~~-~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~ 184 (671)
.. ......+..++.++. +.++++|+.. ..+.+.+..+... ..|++.++|..+ +...++++.
T Consensus 233 ~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------------~~~~~~l~~l~~g-~~~~l~t~H~~~-~~~~~~Rl~ 297 (361)
T 2gza_A 233 EEENAPVTAATLLRSCLRMKPTRILLAELRG-------------GEAYDFINVAASG-HGGSITSCHAGS-CELTFERLA 297 (361)
T ss_dssp ------CCHHHHHHHHTTSCCSEEEESCCCS-------------THHHHHHHHHHTT-CCSCEEEEECSS-HHHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCCEEEEcCchH-------------HHHHHHHHHHhcC-CCeEEEEECCCC-HHHHHHHHH
Confidence 00 012234455555554 6778888753 1244566666433 457888999965 555677777
Q ss_pred hhhc
Q 005892 185 LRED 188 (671)
Q Consensus 185 ll~~ 188 (671)
.+..
T Consensus 298 ~l~~ 301 (361)
T 2gza_A 298 LMVL 301 (361)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7766
No 126
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.61 E-value=6.7e-10 Score=107.56 Aligned_cols=55 Identities=5% Similarity=-0.125 Sum_probs=36.7
Q ss_pred CCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecC-CCcccccccchhhhhcCCeEEEecCcccc
Q 005892 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRD-KTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (671)
Q Consensus 136 ~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHD-l~~~~~~~~~~~ll~~~GkI~~~g~~~e~ 201 (671)
++|+.. +.. ++.+..+.. .+.++|.++|. ++.+...|++++ .+ |+++..|+++.+
T Consensus 127 ~ld~~~------~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~-g~~~~~~~~~~~ 182 (189)
T 2bdt_A 127 QMGERC------LEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TN-PRFIFCMAGDPL 182 (189)
T ss_dssp --CGGG------GHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HC-GGGSCC------
T ss_pred cCCHHH------HHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hC-CcEEEeecCCch
Confidence 566554 666 788888754 47899999998 888887777766 55 999999987654
No 127
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.59 E-value=2.9e-08 Score=108.32 Aligned_cols=134 Identities=12% Similarity=0.080 Sum_probs=72.1
Q ss_pred cccccCCccEEEEEcCCCCChHHHHHHH--hcccCCCCCCCCCeeeccCceEeccccCCCc--chhhhhccCCCccc---
Q 005892 33 LSDCGLSYAVVSIMGPQSSGKSTLLNHL--FGTNFREMDAFKGRSQTTKGIWMARCAGIEP--CTLIMDLEGTDGRE--- 105 (671)
Q Consensus 33 l~~~g~~geivaIlGpNGSGKSTLLn~L--~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~--~~~vld~~g~~~~~--- 105 (671)
-++ .+|++++|+||||||||||++.| .++. ++..|. ...+.+++........ ........|+....
T Consensus 173 GGI--~~Gei~~I~G~sGsGKTTLl~~la~~~~~----p~~~Gg-~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vle 245 (400)
T 3lda_A 173 GGV--ETGSITELFGEFRTGKSQLCHTLAVTCQI----PLDIGG-GEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALN 245 (400)
T ss_dssp TSE--ETTSEEEEEESTTSSHHHHHHHHHHHTTS----CGGGTC-CSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCc--CCCcEEEEEcCCCCChHHHHHHHHHHhcc----CcccCC-CCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhh
Confidence 467 88999999999999999999955 4555 444331 0111234433211111 11111222322110
Q ss_pred ----ccccchHHHHHHHHHHHHHH-----HHHhccccccCCChhhhh--C----hhHHHHHHHHHHHhhCCCCcEEEEEe
Q 005892 106 ----RGEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAA--N----KPLLKTVFQVMMRLFSPRKTTLMFVI 170 (671)
Q Consensus 106 ----r~~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~--~----~~~~~~v~ell~~L~~~~g~TIl~Vt 170 (671)
........+.+.+.-+..++ ++|++|+|++.++..... . ......++..|+++.++.|+|||+|+
T Consensus 246 ni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~ 325 (400)
T 3lda_A 246 NVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTN 325 (400)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred cEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 00011111223333233332 788999999988754310 0 11226678888888877799999999
Q ss_pred cCC
Q 005892 171 RDK 173 (671)
Q Consensus 171 HDl 173 (671)
|..
T Consensus 326 Hv~ 328 (400)
T 3lda_A 326 QVV 328 (400)
T ss_dssp EC-
T ss_pred eec
Confidence 984
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.57 E-value=1.8e-08 Score=112.17 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=37.0
Q ss_pred ccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee
Q 005892 28 IKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (671)
Q Consensus 28 l~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (671)
..++++.+ .+|++++|+|+||||||||+++|+|++ .|.+|++
T Consensus 283 ~~~Isl~i--~~GeVI~LVGpNGSGKTTLl~~LAgll----~~~~G~V 324 (503)
T 2yhs_A 283 DEPLNVEG--KAPFVILMVGVNGVGKTTTIGKLARQF----EQQGKSV 324 (503)
T ss_dssp BCCCCCCS--CTTEEEEEECCTTSSHHHHHHHHHHHH----HHTTCCE
T ss_pred CCCceeec--cCCeEEEEECCCcccHHHHHHHHHHHh----hhcCCeE
Confidence 45677887 889999999999999999999999998 6787864
No 129
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.44 E-value=6.9e-08 Score=105.82 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=75.5
Q ss_pred cccccccccCCccEEEEEcCCCCChHHHHHHHhccc-------CCCCCCCCCeeecc--CceEeccccCCCc--------
Q 005892 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN-------FREMDAFKGRSQTT--KGIWMARCAGIEP-------- 91 (671)
Q Consensus 29 ~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~-------f~~m~p~sG~~q~~--~gi~~~~~~~~~~-------- 91 (671)
.++++.+ ..+++++|+|+||||||||||+|+|.. |.+..|..|.+... ..+.+....+...
T Consensus 148 ~~i~lel--k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 148 RRLRLEL--MLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEE--CCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred eeeeeEE--cCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh
Confidence 4667777 778899999999999999999999984 12223443432111 1111111111100
Q ss_pred -chh---------hhhccCCCcccccccchHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHh
Q 005892 92 -CTL---------IMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRL 158 (671)
Q Consensus 92 -~~~---------vld~~g~~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L 158 (671)
..+ ++.+.+.. ..........++|++.++++++ .+|++ +.+|+.. . ..++.+.+.
T Consensus 226 ~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~------~-~~~~~l~~~ 293 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE------E-EAVKALADA 293 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC------H-HHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh------H-HHHHHHHHH
Confidence 000 00011111 1111233556899999998887 56665 7888765 4 334444444
Q ss_pred hCCCCcEEEEEecC-CCccccccc
Q 005892 159 FSPRKTTLMFVIRD-KTRTPLENL 181 (671)
Q Consensus 159 ~~~~g~TIl~VtHD-l~~~~~~~~ 181 (671)
.+..+.+++++|-- -.-+..+..
T Consensus 294 l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 294 LAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp HHTTTSCEEECCTTTCTTHHHHHH
T ss_pred HHhcCCeEEEEECCCccCHHHHHH
Confidence 33447777776643 333443333
No 130
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.39 E-value=2e-07 Score=103.71 Aligned_cols=42 Identities=14% Similarity=-0.015 Sum_probs=38.3
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
.++.++++.+ .+ ++++|+|||||||||||++|+|+. +|++|+
T Consensus 18 ~~l~~vsl~i--~~-e~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~ 59 (483)
T 3euj_A 18 NGFFARTFDF--DE-LVTTLSGGNGAGKSTTMAGFVTAL----IPDLTL 59 (483)
T ss_dssp TTEEEEEEEC--CS-SEEEEECCTTSSHHHHHHHHHHHH----CCCTTT
T ss_pred ccccceEEEE--cc-ceEEEECCCCCcHHHHHHHHhcCC----CCCCCE
Confidence 4677889998 77 999999999999999999999999 899994
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.37 E-value=1.4e-08 Score=108.30 Aligned_cols=58 Identities=22% Similarity=0.114 Sum_probs=50.5
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (671)
+|+++++++.|+. ..++.++++.. .+|++++|+||||||||||+|+|+|+. .|++|++
T Consensus 29 ~ie~~~~~~~~~~---~~~l~~i~~~~--~~g~~v~i~G~~GaGKSTLl~~l~g~~----~~~~g~v 86 (337)
T 2qm8_A 29 LAESRRADHRAAV---RDLIDAVLPQT--GRAIRVGITGVPGVGKSTTIDALGSLL----TAAGHKV 86 (337)
T ss_dssp HHTCSSHHHHHHH---HHHHHHHGGGC--CCSEEEEEECCTTSCHHHHHHHHHHHH----HHTTCCE
T ss_pred HHeeCCcccccCh---HHHHHhCCccc--CCCeEEEEECCCCCCHHHHHHHHHHhh----hhCCCEE
Confidence 5788889888853 36888899998 899999999999999999999999998 6887853
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.35 E-value=3.5e-07 Score=91.26 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=30.3
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~ 175 (671)
+++++|+++..++. ++.....++..+.++.++.|+|+|+++|....
T Consensus 130 ~~vviD~~~~l~~~----~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 130 KRVVVDSVTTLYIN----KPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp CEEEEETSGGGTTT----CGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred CEEEECCchHhhcC----CHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 78999999876621 12224455555555555569999999998754
No 133
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.31 E-value=1.3e-07 Score=98.99 Aligned_cols=134 Identities=13% Similarity=0.002 Sum_probs=69.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccc-cC----CCcchhhhhccCCCcccccccchH
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC-AG----IEPCTLIMDLEGTDGRERGEDDTA 112 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~-~~----~~~~~~vld~~g~~~~~r~~~~~~ 112 (671)
.+|++++|+|||||||||+++.|+|.. .+..|. .+.+-.. .. .+......+..|.+..... .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l----~~~~G~-----~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~-~--- 169 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS----MLEKHK-----KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCY-T--- 169 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH----HHTTCC-----CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCS-S---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH----HHhcCC-----EEEEEecCcccchHHHHHHHHHHhcCCCeEecC-C---
Confidence 468899999999999999999999998 566783 1111111 00 0011111122233221111 1
Q ss_pred HHHHHHHHHHHHH--HHHhccccccCCChhhhhChhHHHHHHHHHHHhh--CCCCcEEEE-EecCCCcccccccchhhhh
Q 005892 113 FEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF--SPRKTTLMF-VIRDKTRTPLENLEPVLRE 187 (671)
Q Consensus 113 ~qrQrv~iAlAL~--evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~--~~~g~TIl~-VtHDl~~~~~~~~~~~ll~ 187 (671)
...-+.+++.+ . +++|+| |.|+|+.. ...+.++..-+. ...++++++ ++|+...+...++....+.
T Consensus 170 ~~~l~~al~~~-~~~dlvIiD--T~G~~~~~------~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~ 240 (296)
T 2px0_A 170 KEEFQQAKELF-SEYDHVFVD--TAGRNFKD------PQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVP 240 (296)
T ss_dssp HHHHHHHHHHG-GGSSEEEEE--CCCCCTTS------HHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSC
T ss_pred HHHHHHHHHHh-cCCCEEEEe--CCCCChhh------HHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 11123333322 2 899999 77888764 333333332222 122334444 4787665555555544343
Q ss_pred cCCeEEE
Q 005892 188 DIQKIWD 194 (671)
Q Consensus 188 ~~GkI~~ 194 (671)
. +.++.
T Consensus 241 ~-~giVl 246 (296)
T 2px0_A 241 V-NQYIF 246 (296)
T ss_dssp C-CEEEE
T ss_pred C-CEEEE
Confidence 3 55554
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=4.4e-07 Score=96.06 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcc
Q 005892 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 126 evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
+++++|||++ ||+.. ...+++.+.+.. .++++|++||+...+
T Consensus 136 ~vlilDE~~~-L~~~~------~~~L~~~le~~~--~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 136 KCVIINEANS-LTKDA------QAALRRTMEKYS--KNIRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEECTTS-SCHHH------HHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred eEEEEeCccc-cCHHH------HHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence 5999999988 99877 888888888863 378999999998653
No 135
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.28 E-value=4.6e-08 Score=102.86 Aligned_cols=57 Identities=18% Similarity=0.075 Sum_probs=43.8
Q ss_pred eEEEEeeeEEecccccccccccccccc-----------------ccCCccEEEEEcCCCCChHHHHHHHhcccCCCCC--
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSD-----------------CGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-- 69 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~-----------------~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-- 69 (671)
+|+++|+++.|. +++.++++.+ ...+|+++||+||||||||||+++|.|+. .
T Consensus 37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l----~~~ 107 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL----SRW 107 (308)
T ss_dssp TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH----TTS
T ss_pred ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH----hhC
Confidence 588889999994 2344444322 12578899999999999999999999998 6
Q ss_pred CCCCe
Q 005892 70 AFKGR 74 (671)
Q Consensus 70 p~sG~ 74 (671)
|++|+
T Consensus 108 ~~~G~ 112 (308)
T 1sq5_A 108 PEHRR 112 (308)
T ss_dssp TTCCC
T ss_pred CCCCe
Confidence 78884
No 136
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.28 E-value=2.5e-07 Score=93.63 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=26.0
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..++.+++|.+ .+|+++||+||||||||||+++|+|++
T Consensus 12 ~~~l~~isl~i--~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 12 DLGTENLYFQS--MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeecceeccC--CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999 899999999999999999999999975
No 137
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.23 E-value=4.6e-07 Score=87.56 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=57.4
Q ss_pred ccchHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccc
Q 005892 108 EDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (671)
Q Consensus 108 ~~~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~ 180 (671)
...+++|+|++++|++++ +++|||||+++||+.. ...+.+++.++.+ +.++|+|||+.... ..|
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~------~~~~~~~l~~~~~--~~~~ivith~~~~~-~~a 133 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDAN------VKRVADLIKESSK--ESQFIVITLRDVMM-ANA 133 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH------HHHHHHHHHHHTT--TSEEEEECSCHHHH-TTC
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHH------HHHHHHHHHHhcc--CCEEEEEEecHHHH-HhC
Confidence 456899999999999997 6999999999999998 9999999999864 56899999986543 356
Q ss_pred cchhh
Q 005892 181 LEPVL 185 (671)
Q Consensus 181 ~~~~l 185 (671)
++++.
T Consensus 134 d~i~~ 138 (173)
T 3kta_B 134 DKIIG 138 (173)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 66553
No 138
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.21 E-value=1.7e-07 Score=105.39 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHH-----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccchhh
Q 005892 111 TAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (671)
Q Consensus 111 ~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~~~l 185 (671)
+++|+||+++|++++ ++||+|||++|||+.. ...|.++|.++.+ |.|||+||||++.+. .|+++++
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~------~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA------AIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHH------HHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEE
Confidence 677999999999998 4899999999999998 9999999999974 899999999998765 5888888
Q ss_pred hhc
Q 005892 186 RED 188 (671)
Q Consensus 186 l~~ 188 (671)
+.+
T Consensus 470 ~~~ 472 (517)
T 4ad8_A 470 VEK 472 (517)
T ss_dssp EEC
T ss_pred Eec
Confidence 855
No 139
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.17 E-value=6.8e-07 Score=86.92 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|++++|+||||||||||+++|+|+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 578899999999999999999999987
No 140
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.17 E-value=3.2e-06 Score=88.41 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=62.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCc-----chhhhhccCCCcccccccchHH
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP-----CTLIMDLEGTDGRERGEDDTAF 113 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~-----~~~vld~~g~~~~~r~~~~~~~ 113 (671)
+|++++|+|+||+||||++..|+|+. .+..|++ .+.+.....+ .....+..|++....+......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~----~~~~~~v------~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~ 166 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY----KGKGRRP------LLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPE 166 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH----HHTTCCE------EEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH----HHcCCeE------EEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHH
Confidence 67899999999999999999999998 5665542 2221111000 0011222333322111111122
Q ss_pred HHHHHHHHHHHH---HHHhcccc-ccCCChhhhhChhHHHHHHHHHHHh
Q 005892 114 EKQSALFALAVS---DIVLINMW-CHDIGREQAANKPLLKTVFQVMMRL 158 (671)
Q Consensus 114 qrQrv~iAlAL~---evLlLDEp-t~~LD~~~~~~~~~~~~v~ell~~L 158 (671)
+.++.+++.+.. +++|+|+| +.++|... ...+..+...+
T Consensus 167 ~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~------~~~l~~~~~~~ 209 (295)
T 1ls1_A 167 SIRRRVEEKARLEARDLILVDTAGRLQIDEPL------MGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCccccHHH------HHHHHHHhhhc
Confidence 335667776653 89999999 88888765 66666665555
No 141
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.15 E-value=3.9e-07 Score=93.22 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=35.1
Q ss_pred ceEEEEee-eEEeccccccccccccccccccCC---ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 8 CSTQLIDG-DGTFNVSGIEHFIKEVKLSDCGLS---YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 8 ~~I~i~nl-sk~y~~~~l~~vl~~v~l~~~g~~---geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++|+++|+ ++.|++ ...++.++++.+ .+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~--~~~~l~~~~~~i--~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE--EQQILKKKAEEV--KPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTT--HHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecC--cchhhhhhhhhh--hhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 999932 246899999998 88 9999999999999999999999966
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.11 E-value=7.2e-07 Score=87.87 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=26.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|++++|+||||||||||+++|+|++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999999998
No 143
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.11 E-value=7.6e-07 Score=88.99 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=22.3
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHh-ccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLF-GTN 64 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~-Gl~ 64 (671)
....++++.+ .+|++++|+||||||||||+++|+ |+.
T Consensus 15 ~~~~~~sl~v--~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLK--SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCE--ECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCccc--CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4567788888 899999999999999999999999 987
No 144
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.10 E-value=1e-06 Score=85.17 Aligned_cols=25 Identities=44% Similarity=0.675 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
|++++|+||||||||||+++|+|+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999998
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.09 E-value=1.1e-06 Score=86.09 Aligned_cols=26 Identities=42% Similarity=0.636 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+|.+++|+||||||||||+++|.|+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999999987
No 146
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.07 E-value=2.3e-06 Score=91.59 Aligned_cols=122 Identities=25% Similarity=0.235 Sum_probs=70.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHHH
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 119 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~ 119 (671)
.-.++|+|++|+|||||+|.|.|..+. ..+...++.+..............++|..|...... .....++++.+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~ 241 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPE----IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI-SERNEIEKQAIL 241 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCE----EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCS-TTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc----cCCCCCeeeceeEEEEEecCceEEEEeCCCccccch-hhhhHHHHHHHH
Confidence 347999999999999999999997621 111111222322221110112345567777644221 122345555543
Q ss_pred HHHHH-H--HHHhcc-ccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEe--cCCCc
Q 005892 120 FALAV-S--DIVLIN-MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVI--RDKTR 175 (671)
Q Consensus 120 iAlAL-~--evLlLD-Ept~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~Vt--HDl~~ 175 (671)
+.+. + -++++| ++..+++... ...+++.+..+.. +..+|+|. ||+..
T Consensus 242 -~~~~~ad~illV~D~s~~~~~~~~~------~~~~~~~i~~~~~--~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 242 -ALRYLGNLIIYIFDPSEHCGFPLEE------QIHLFEEVHGEFK--DLPFLVVINKIDVAD 294 (357)
T ss_dssp -GGGGTCSEEEEEECTTCTTSSCHHH------HHHHHHHHHHHTT--TSCEEEEECCTTTCC
T ss_pred -HHHhcCCEEEEEEeCCccccCCHHH------HHHHHHHHHHhcC--CCCEEEEEECcccCC
Confidence 3222 2 356788 7777777766 6667777766543 67888888 77743
No 147
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.02 E-value=3.3e-07 Score=92.45 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=38.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
.|++.|+...|+. ++++. + ++++|+|||||||||||++|+|++ .|++|.
T Consensus 9 ~l~l~~~~~~~~~--------~~~~~----~-~~~~i~GpnGsGKSTll~~i~g~~----~~~~G~ 57 (227)
T 1qhl_A 9 SLTLINWNGFFAR--------TFDLD----E-LVTTLSGGNGAGKSTTMAAFVTAL----IPDLTL 57 (227)
T ss_dssp EEEEEEETTEEEE--------EECHH----H-HHHHHHSCCSHHHHHHHHHHHHHH----SCCTTT
T ss_pred EEEEEeeecccCC--------EEEEc----C-cEEEEECCCCCCHHHHHHHHhccc----ccCCCe
Confidence 5888898776632 23332 2 589999999999999999999999 788884
No 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.01 E-value=3.5e-06 Score=81.40 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+||||||||++.+.|..+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999885
No 149
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.98 E-value=4.6e-06 Score=89.26 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=31.0
Q ss_pred EeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 13 IDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 13 ~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++.+.|+..+...++.++++.. + .++|+|++|||||||+|.|.|..
T Consensus 12 ~~~~~~~~~~~~~~~l~~i~~~l--p---~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 12 QRACTALGDHGDSSALPTLWDSL--P---AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp TTTTTSCSSCCSSCCC----CCC--C---EEEEECBTTSSHHHHHHHHHTSC
T ss_pred HHHHHhhCccccccccccccccC--C---EEEEECCCCCcHHHHHHHHhCCC
Confidence 34445554322234666777766 2 79999999999999999999954
No 150
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.98 E-value=2.8e-06 Score=88.89 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=28.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (671)
..|++++|+||||||||||||+|+|+. .|++|++
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~----~~~~G~i 200 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGL----KLRVSEV 200 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTC----CCC----
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccc----cccccce
Confidence 467899999999999999999999999 8998863
No 151
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.97 E-value=6.4e-06 Score=78.69 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=29.5
Q ss_pred ccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 30 EVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 30 ~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
++++.. .+| +++|+||||||||||+++|.+++ .+..|
T Consensus 19 ~~~~~~--~~g-~~~i~G~NGsGKStll~ai~~~l----~~~~~ 55 (182)
T 3kta_A 19 KVVIPF--SKG-FTAIVGANGSGKSNIGDAILFVL----GGLSA 55 (182)
T ss_dssp CEEEEC--CSS-EEEEEECTTSSHHHHHHHHHHHT----TCCCT
T ss_pred cEEEec--CCC-cEEEECCCCCCHHHHHHHHHHHH----cCCcc
Confidence 444554 455 89999999999999999999988 45555
No 152
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.92 E-value=5.8e-06 Score=88.50 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=64.0
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccc-cccchH
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRER-GEDDTA 112 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r-~~~~~~ 112 (671)
++ .+|+++.|.||+|||||||+..+++.. ....|. .+++......... .....|.+.... ......
T Consensus 57 Gl--~~G~iv~I~G~pGsGKTtLal~la~~~----~~~g~~-----vlyi~~E~~~~~~--~a~~lG~~~~~l~i~~~~~ 123 (349)
T 2zr9_A 57 GL--PRGRVIEIYGPESSGKTTVALHAVANA----QAAGGI-----AAFIDAEHALDPE--YAKKLGVDTDSLLVSQPDT 123 (349)
T ss_dssp SE--ETTSEEEEEESTTSSHHHHHHHHHHHH----HHTTCC-----EEEEESSCCCCHH--HHHHTTCCGGGCEEECCSS
T ss_pred Cc--cCCeEEEEECCCCCCHHHHHHHHHHHH----HhCCCe-----EEEEECCCCcCHH--HHHHcCCCHHHeEEecCCC
Confidence 56 789999999999999999988887554 122232 1222221111110 111122221100 000000
Q ss_pred HHHHHHHHHHHHH-----HHHhccccccCCChhhhh----Ch--hH-HHHHHHHHHHh---hCCCCcEEEEEecCCC
Q 005892 113 FEKQSALFALAVS-----DIVLINMWCHDIGREQAA----NK--PL-LKTVFQVMMRL---FSPRKTTLMFVIRDKT 174 (671)
Q Consensus 113 ~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~~~----~~--~~-~~~v~ell~~L---~~~~g~TIl~VtHDl~ 174 (671)
-.+.+.++.+++ ++|++|++++-+...... ++ .. .+.+.+.+.+| .++.|+++|+++|-..
T Consensus 124 -~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 124 -GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp -HHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred -HHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 122334455554 799999998876321100 11 01 12334444444 2446999999999764
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.91 E-value=4.8e-06 Score=87.61 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=29.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
.++++++|+|||||||||+++.|+|.. .+..|+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l----~~~g~k 134 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF----VDEGKS 134 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH----HHTTCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH----HhcCCE
Confidence 678999999999999999999999998 566554
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.91 E-value=4.5e-06 Score=80.23 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|++++|+||||||||||+++|+|..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 578899999999999999999999964
No 155
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.89 E-value=6.1e-06 Score=88.56 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=29.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCC-CCCCee
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRS 75 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~-p~sG~~ 75 (671)
.+|++++|+||||||||||+|+|+|+. . |.+|.+
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~----~~~~~G~I 247 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQ----NEILTNDV 247 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCS----SCCCCC--
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccc----cccccCCc
Confidence 368899999999999999999999998 7 888853
No 156
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.88 E-value=5.4e-06 Score=80.49 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|++++|+||||||||||+++|+|..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 568899999999999999999999987
No 157
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.86 E-value=5.9e-06 Score=79.43 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|++++|+||||||||||+++|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999999987
No 158
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.85 E-value=6.7e-06 Score=90.12 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (671)
.+|++++|+|||||||||||++|+|++ +|.+|++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l----~~~~g~I 198 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL----NSSERNI 198 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH----CCTTSCE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc----CCCCCEE
Confidence 578899999999999999999999998 7888853
No 159
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.81 E-value=7.1e-06 Score=89.97 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHH-------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcccccccc
Q 005892 110 DTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (671)
Q Consensus 110 ~~~~qrQrv~iAlAL~-------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~~~~ 182 (671)
.+++|+|++++|++++ +++|||||+++||+.. +..+.+.+.++... +.++|+|||+.... ..|++
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~------~~~l~~~l~~~~~~-~~~~ii~th~~~~~-~~~d~ 405 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITN------VQRIAAYIRRHRNP-DLQFIVISLKNTMF-EKSDA 405 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHH------HHHHHHHHHHHCBT-TBEEEEECSCHHHH-TTCSE
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHH------HHHHHHHHHHHhcC-CCEEEEEECCHHHH-HhCCE
Confidence 4678999999999998 5999999999999998 99999999998654 88999999996443 35777
Q ss_pred hhhhh
Q 005892 183 PVLRE 187 (671)
Q Consensus 183 ~~ll~ 187 (671)
++++.
T Consensus 406 ~~~~~ 410 (430)
T 1w1w_A 406 LVGVY 410 (430)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 160
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.81 E-value=4.6e-06 Score=93.69 Aligned_cols=42 Identities=19% Similarity=0.085 Sum_probs=36.3
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
++..+++.+ .+|++++|+||||||||||||+|+|++ +|+.|.
T Consensus 249 ~l~~l~~~v--~~g~~i~I~GptGSGKTTlL~aL~~~i----~~~~gi 290 (511)
T 2oap_1 249 VLAYLWLAI--EHKFSAIVVGETASGKTTTLNAIMMFI----PPDAKV 290 (511)
T ss_dssp HHHHHHHHH--HTTCCEEEEESTTSSHHHHHHHHGGGS----CTTCCE
T ss_pred HHHHHHHHH--hCCCEEEEECCCCCCHHHHHHHHHhhC----CCCCCE
Confidence 455667777 788899999999999999999999999 788774
No 161
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.80 E-value=5.4e-06 Score=83.61 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=28.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh---cccCCCCCCCCCe
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLF---GTNFREMDAFKGR 74 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~---Gl~f~~m~p~sG~ 74 (671)
.++++++|+||||||||||+++|+ |+. .|++|.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~----~~~~G~ 60 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQ----HLSSGH 60 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCC----CEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe----EecHHH
Confidence 346799999999999999999999 998 677774
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.79 E-value=6.1e-06 Score=80.58 Aligned_cols=46 Identities=24% Similarity=0.096 Sum_probs=32.2
Q ss_pred eeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 14 DGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 14 nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
|++..++. ........+.. .+|++++|+||||||||||+++|+|.+
T Consensus 4 ~~~~~~~~---~~~~~~~~~~~--~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 4 NIKWHECS---VEKVDRQRLLD--QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp ------CC---CCHHHHHHHHT--SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcccccc---cCHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45554432 23445555555 889999999999999999999999998
No 163
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.79 E-value=3.5e-06 Score=88.67 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (671)
.+|++++|+||||+|||||+|+|.|+. .|.+|.+
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~----~~~~G~I 204 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPEL----GLRTNEI 204 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccc----cccccce
Confidence 578999999999999999999999998 7888864
No 164
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.78 E-value=1.2e-05 Score=84.24 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=29.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCee
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (671)
..|++++|+||||||||||+|+|. +. .|.+|.+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~----~~~~G~i 195 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GE----ELRTQEV 195 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SC----CCCCSCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hh----hCccccc
Confidence 467899999999999999999999 88 7888864
No 165
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.77 E-value=1.1e-05 Score=86.78 Aligned_cols=73 Identities=4% Similarity=-0.001 Sum_probs=57.6
Q ss_pred chHHHHHHHHHH------HHHH----HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCccccc
Q 005892 110 DTAFEKQSALFA------LAVS----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (671)
Q Consensus 110 ~~~~qrQrv~iA------lAL~----evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~~~~ 179 (671)
.+++|+|++++| ++++ ++||||||+++||+.. +..+.+.+.++.. +.+||+|||+.+ +...
T Consensus 281 lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~------~~~l~~~l~~~~~--~~~vi~~th~~~-~~~~ 351 (371)
T 3auy_A 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR------RAKLAEIFRKVKS--IPQMIIITHHRE-LEDV 351 (371)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH------HHHHHHHHHHCCS--CSEEEEEESCGG-GGGG
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH------HHHHHHHHHHhcc--CCeEEEEEChHH-HHhh
Confidence 467899998654 4444 4799999999999998 9999999999743 468999999986 4567
Q ss_pred ccchhhhhcCCe
Q 005892 180 NLEPVLREDIQK 191 (671)
Q Consensus 180 ~~~~~ll~~~Gk 191 (671)
|++++++.+.|.
T Consensus 352 ~d~~~~l~k~~~ 363 (371)
T 3auy_A 352 ADVIINVKKDGN 363 (371)
T ss_dssp CSEEEEEEESSS
T ss_pred CCEEEEEEecCC
Confidence 888877765444
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.74 E-value=2.8e-05 Score=83.44 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=26.7
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++ .+|+++.|+||+|||||||+..+++..
T Consensus 57 Gi--~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 57 GY--PRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SE--ETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred Cc--cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56 789999999999999999999999876
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.74 E-value=1.1e-05 Score=78.70 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|++++|+||||||||||+++|+|..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 678999999999999999999999976
No 168
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.69 E-value=2.1e-05 Score=78.76 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.|+|+|++|+|||||+|.|.|..+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999873
No 169
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.68 E-value=9.7e-06 Score=82.46 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh---cccCCCCCCCCCee
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLF---GTNFREMDAFKGRS 75 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~---Gl~f~~m~p~sG~~ 75 (671)
.+|.+++|+||||||||||+++|+ |+. .+++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~----~~d~g~i 61 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR----LLDSGAI 61 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE----EEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC----cCCCCce
Confidence 567899999999999999999999 988 5788853
No 170
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.66 E-value=2.2e-05 Score=77.24 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|.+++|+||||||||||++.|++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 468899999999999999999999987
No 171
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=2.2e-05 Score=76.43 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=24.8
Q ss_pred EeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 18 TFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 18 ~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+|.+......+.++++.. .++.+++|+||+||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQS--NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEec--CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 343333567888999998 889999999999999999999999876
No 172
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.62 E-value=2.1e-05 Score=78.65 Aligned_cols=26 Identities=38% Similarity=0.333 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
.+|++++|.|+||||||||+++|+|+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 77899999999999999999999996
No 173
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.52 E-value=4.9e-05 Score=74.87 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|.+++|+||||||||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 688899999999999999999999976
No 174
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.52 E-value=2.7e-05 Score=76.12 Aligned_cols=32 Identities=34% Similarity=0.232 Sum_probs=28.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.+|.+++|+|+||||||||+++|.|.+ .+..|
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~----~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL----REQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH----HHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH----hhcCC
Confidence 578899999999999999999999988 55555
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.51 E-value=8.5e-05 Score=82.64 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=59.0
Q ss_pred EEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHHHHHH
Q 005892 43 VSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 122 (671)
Q Consensus 43 vaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iAl 122 (671)
+.|+||+|+|||||+++|+|.. ... -+.+... +..... .....++.+..|+.
T Consensus 52 vLL~GppGtGKT~Laraia~~~----~~~--------f~~is~~----------~~~~~~------~g~~~~~~r~lf~~ 103 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA----NVP--------FFHISGS----------DFVELF------VGVGAARVRDLFAQ 103 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH----TCC--------EEEEEGG----------GTTTCC------TTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc----CCC--------eeeCCHH----------HHHHHH------hcccHHHHHHHHHH
Confidence 7899999999999999999966 110 0111111 111100 11344667778888
Q ss_pred HHH---HHHhccccccCCChh----hhhChhHHHHHHHHHHHh---hCCCCcEEEEEecCCCc
Q 005892 123 AVS---DIVLINMWCHDIGRE----QAANKPLLKTVFQVMMRL---FSPRKTTLMFVIRDKTR 175 (671)
Q Consensus 123 AL~---evLlLDEpt~~LD~~----~~~~~~~~~~v~ell~~L---~~~~g~TIl~VtHDl~~ 175 (671)
+.. .+|++||+.+-.... .+.++.....+.+++..+ ....+..||.+||..+.
T Consensus 104 A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 104 AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166 (476)
T ss_dssp HHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence 776 589999984311100 001111234444444444 22347888889998654
No 176
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.50 E-value=3.9e-05 Score=72.70 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|++++|+||||||||||+++|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 568899999999999999999999875
No 177
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.50 E-value=3.7e-05 Score=72.54 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.+++|+||+|||||||+++|++.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 178
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.48 E-value=2.9e-05 Score=85.84 Aligned_cols=133 Identities=5% Similarity=0.004 Sum_probs=72.8
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchh-h-hhccCCCc-
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTL-I-MDLEGTDG- 103 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~-v-ld~~g~~~- 103 (671)
.+.++..+. .+|+++.|.|++|+|||||+..|++.. .+..|.. ..++........... + ....|.+.
T Consensus 192 ~LD~~~gGl--~~G~liiI~G~pG~GKTtl~l~ia~~~----~~~~g~~----Vl~~s~E~s~~~l~~r~~~~~~~~~~~ 261 (454)
T 2r6a_A 192 ELDRMTSGF--QRSDLIIVAARPSVGKTAFALNIAQNV----ATKTNEN----VAIFSLEMSAQQLVMRMLCAEGNINAQ 261 (454)
T ss_dssp HHHHHHSSB--CTTCEEEEECCTTSCHHHHHHHHHHHH----HHHSSCC----EEEEESSSCHHHHHHHHHHHHHTCCHH
T ss_pred HHHhhcCCC--CCCCEEEEECCCCCCHHHHHHHHHHHH----HHhCCCc----EEEEECCCCHHHHHHHHHHHHcCCCHH
Confidence 344555577 899999999999999999999999866 2333521 112111100000000 0 00000000
Q ss_pred ---------c----------------c---ccccchHHHHHHHHHHHHHH-----HHHhccccccCCChhh--hhChhHH
Q 005892 104 ---------R----------------E---RGEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQ--AANKPLL 148 (671)
Q Consensus 104 ---------~----------------~---r~~~~~~~qrQrv~iAlAL~-----evLlLDEpt~~LD~~~--~~~~~~~ 148 (671)
. . ........+.+ ..++.+. +++++|+++.-.+... .......
T Consensus 262 ~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i 339 (454)
T 2r6a_A 262 NLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEV 339 (454)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHH
Confidence 0 0 00001122222 3344444 7899999987654321 1123345
Q ss_pred HHHHHHHHHhhCCCCcEEEEEec
Q 005892 149 KTVFQVMMRLFSPRKTTLMFVIR 171 (671)
Q Consensus 149 ~~v~ell~~L~~~~g~TIl~VtH 171 (671)
..+...|+.+.++.|++||+++|
T Consensus 340 ~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 340 SEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCeEEEEec
Confidence 77788888887777999999999
No 179
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.48 E-value=4.6e-05 Score=83.49 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=34.3
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.|++.|+ +.|+.. . .+ .. .++++++|+|||||||||||++|+|+.
T Consensus 6 ~l~~~~~-~~~~~~--~----~~--~~--~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 6 GLELSNF-KSYRGV--T----KV--GF--GESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEEESC-SSCCSE--E----EE--EC--TTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEeCE-EEECCc--e----eE--Ee--cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3678888 677431 1 12 23 347799999999999999999999998
No 180
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.41 E-value=5.2e-05 Score=78.22 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=30.4
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++.++++.. .+| ++|+||||||||||+++|+|..
T Consensus 34 ~~l~~~~l~~--~~G--vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 34 DQFKALGLVT--PAG--VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HHHHHTTCCC--CSE--EEEESSTTSCHHHHHHHHHHHT
T ss_pred HHHHHcCCCC--CCe--EEEECCCCCcHHHHHHHHHHHc
Confidence 3566777777 677 9999999999999999999987
No 181
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.40 E-value=0.00014 Score=77.27 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCcc--EEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYA--VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~ge--ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+. .+.|.||+|+|||||++.+++..
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4556 89999999999999999999987
No 182
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.39 E-value=9.8e-05 Score=69.87 Aligned_cols=29 Identities=41% Similarity=0.487 Sum_probs=23.9
Q ss_pred cCCccEEEEEcCCCCChHHHHHHHhcccC
Q 005892 37 GLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 37 g~~geivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
|.++..++|+|++|+|||||+|.|.|..+
T Consensus 1 ~~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 1 GSHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45677899999999999999999999763
No 183
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.37 E-value=2.1e-05 Score=75.70 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCCCC
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAF 71 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~ 71 (671)
++++|+|+||||||||++.|.|+. +|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~----~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL----RER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH----HHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----hhc
Confidence 479999999999999999999998 666
No 184
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.37 E-value=5.3e-05 Score=81.89 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=34.1
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..++.++++++ .+|++++|+||||||||||+++|+|..
T Consensus 156 ~~~l~~~~~~i--~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNI--PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCC--TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccccc--CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35677888888 899999999999999999999999965
No 185
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.36 E-value=7.5e-05 Score=78.97 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++||+||||||||||+++|.|++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999998
No 186
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.36 E-value=6.8e-05 Score=78.35 Aligned_cols=28 Identities=39% Similarity=0.627 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccC
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++.+|+|+|++|+|||||+|.|.|..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4555899999999999999999999864
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.00011 Score=77.57 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999999876
No 188
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.29 E-value=1.3e-05 Score=84.79 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=38.1
Q ss_pred eEEEEeeeEEeccccccccccccccccc-----cCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDC-----GLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~-----g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++..+++..|+. ..++.++++.+. |...+.++|+||||+|||||+++|+|..
T Consensus 18 ~lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 18 FLRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp TTSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HcCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566677777743 245555555541 1233789999999999999999999987
No 189
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.27 E-value=0.00021 Score=72.24 Aligned_cols=120 Identities=10% Similarity=0.021 Sum_probs=59.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCC-CCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHHHH
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 120 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~-p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~i 120 (671)
.|+|+|+.|+|||||+|.|.|-.+.... +..| +|................+.|..|+...... ..+...-.+
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~---~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~----~~~~~~~~i 95 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRFFSRLGATS---VTRACTTGSRRWDKCHVEVVDTPDIFSSQVS----KTDPGCEER 95 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC------------CCSCEEEEEEETTEEEEEEECCSCSSTTHH----HHSTTSHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccccCCCCC---ccccEEEEEEEECCcEEEEEECCCCCCCCCC----cHHHHHHHH
Confidence 5899999999999999999997632111 1111 2211111111111234556788887532211 111111222
Q ss_pred HHHHH------HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCC--CCcEEEEEecCCCc
Q 005892 121 ALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTR 175 (671)
Q Consensus 121 AlAL~------evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~--~g~TIl~VtHDl~~ 175 (671)
..++. +++|+-...+.+... -..+++.+.+++.. .+..+|+++|-.+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~-------~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQ-------DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHH-------HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHH-------HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 22221 444443332333221 45566667666533 26789999986654
No 190
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.26 E-value=0.00018 Score=69.51 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+||||||||++.|+|..|
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999874
No 191
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.25 E-value=0.00011 Score=77.41 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc----CCCCCCCCCe
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN----FREMDAFKGR 74 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~----f~~m~p~sG~ 74 (671)
.+++|+|+||||||||||+|.|.. ..+..|+.|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~ 42 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE 42 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcc
Confidence 589999999999999999999974 0111367776
No 192
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.20 E-value=7.8e-05 Score=84.45 Aligned_cols=32 Identities=28% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.+|++++|+|+||||||||+++|+|.+ .|.+|
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L----~~~~G 398 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL----MEMGG 398 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH----HTTCS
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh----cccCC
Confidence 688999999999999999999999998 67766
No 193
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.17 E-value=0.00014 Score=73.39 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=29.9
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++.++++.. .+| ++|+||||||||||+++|+|..
T Consensus 39 ~~~~~~~~~~--~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 39 SRFHEMGARI--PKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHTTCCC--CSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHcCCCC--CCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 4566677776 666 8999999999999999999987
No 194
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.17 E-value=0.00016 Score=68.92 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=24.9
Q ss_pred cCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 37 GLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 37 g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
|.+|.+++|+|++||||||+++.|++.+
T Consensus 2 ~~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 2 HMRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999987
No 195
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.17 E-value=2.4e-05 Score=83.27 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=39.0
Q ss_pred EEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++..+..+.|.. ..++.++++.. .++.+++|+|++|+|||||++.|+|..
T Consensus 31 ie~~~~~~~~~~---~~~~~~l~~~~--~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 31 VESRHPRHQALS---TQLLDAIMPYC--GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHCCCHHHHHHH---HHHHHHHGGGC--SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcCCchhhhHH---HHHHHhCCccc--CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445555555532 35666777776 788999999999999999999999987
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.14 E-value=0.0003 Score=81.41 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++..++|+|++|+|||||++.|.|..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 567799999999999999999999876
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.13 E-value=0.00021 Score=69.71 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++.+++|+|++|||||||++.|.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 566799999999999999999999976
No 198
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.12 E-value=0.00017 Score=76.24 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=34.1
Q ss_pred cccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 29 ~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
.++++.. .++++++|+|+||+||||++..|+|.. .+..|+
T Consensus 96 ~~l~~~~--~~~~vI~ivG~~G~GKTT~~~~LA~~l----~~~g~k 135 (320)
T 1zu4_A 96 YRIDFKE--NRLNIFMLVGVNGTGKTTSLAKMANYY----AELGYK 135 (320)
T ss_dssp CCCCCCT--TSCEEEEEESSTTSSHHHHHHHHHHHH----HHTTCC
T ss_pred cCccccC--CCCeEEEEECCCCCCHHHHHHHHHHHH----HHCCCe
Confidence 4667766 789999999999999999999999998 566554
No 199
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.10 E-value=0.00022 Score=69.41 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl 63 (671)
+++|+||+||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7999999999999999999984
No 200
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.10 E-value=0.00017 Score=73.81 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=29.1
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++.++++.. .+| ++|+||||||||||+++|+|..
T Consensus 63 ~~l~~~~~~~--~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 63 SRFHEMGARI--PKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHTTCCC--CCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHcCCCC--CCe--EEEECCCcChHHHHHHHHHHHc
Confidence 3455666666 566 8999999999999999999987
No 201
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.07 E-value=0.00046 Score=76.16 Aligned_cols=119 Identities=20% Similarity=0.274 Sum_probs=53.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHHHHH
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 121 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv~iA 121 (671)
.|+|+|++|+|||||+|.|.|-.+....+..| ++................+.|..|+..... ....-.+..+..+
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g---~t~~~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPG---VTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEIA 99 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCCCC---cceeEEEEEEEECCceEEEEECCCCCCcch--HHHHHHHHHHHhh
Confidence 69999999999999999999976432223334 222211111111122345667777652111 1111122222233
Q ss_pred HHHHHHHhccccc-cCCChhhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCCCcc
Q 005892 122 LAVSDIVLINMWC-HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 122 lAL~evLlLDEpt-~~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
..-++++|+.... .++... -..+.+.+.+ .++.+|+|.+-.+..
T Consensus 100 ~~~ad~il~VvD~~~~~~~~-------d~~l~~~l~~----~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAA-------DEEVAKILYR----TKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHH-------HHHHHHHHTT----CCSCEEEEEECC---
T ss_pred HhhCCEEEEEEeCCCCCChH-------HHHHHHHHHH----cCCCEEEEEECccch
Confidence 3333666654432 223322 2334444332 477788888766543
No 202
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.06 E-value=0.00044 Score=76.10 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=58.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhcccCCCCCCC-CCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHHH
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 118 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~-sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQrv 118 (671)
+..+.|.||+|+|||||+++|++.. ... .|. .-+++... .+.-+..+ ...... .-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l----~~~~~~~----~v~~v~~~------~~~~~~~~---~~~~~~-------~~ 185 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV----VQNEPDL----RVMYITSE------KFLNDLVD---SMKEGK-------LN 185 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH----HHHCCSS----CEEEEEHH------HHHHHHHH---HHHTTC-------HH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH----HHhCCCC----eEEEeeHH------HHHHHHHH---HHHccc-------HH
Confidence 5689999999999999999999876 111 121 01122110 00000000 000000 00
Q ss_pred HHHHHHH---HHHhccccccCCCh-hhhhChhHHHHHHHHHHHhhCCCCcEEEEEecCC
Q 005892 119 LFALAVS---DIVLINMWCHDIGR-EQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (671)
Q Consensus 119 ~iAlAL~---evLlLDEpt~~LD~-~~~~~~~~~~~v~ell~~L~~~~g~TIl~VtHDl 173 (671)
.+...+. ++|++||+..-.+. .. ...++.++..+... |..+|++||+.
T Consensus 186 ~~~~~~~~~~~vL~IDEi~~l~~~~~~------q~~l~~~l~~l~~~-~~~iIitt~~~ 237 (440)
T 2z4s_A 186 EFREKYRKKVDILLIDDVQFLIGKTGV------QTELFHTFNELHDS-GKQIVICSDRE 237 (440)
T ss_dssp HHHHHHTTTCSEEEEECGGGGSSCHHH------HHHHHHHHHHHHTT-TCEEEEEESSC
T ss_pred HHHHHhcCCCCEEEEeCcccccCChHH------HHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 1122221 78999999664442 23 67788888887654 88999999985
No 203
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.06 E-value=0.00022 Score=70.20 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+++|+||+||||||++++|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999864
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.05 E-value=0.00021 Score=78.43 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++.+++++|||||||||++..|++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999988
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.03 E-value=0.0002 Score=76.41 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=27.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
.++.+++|+|++|||||||+|.|.|.. .+..|+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~----~~~~~~ 104 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML----TERGHK 104 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH----HHTTCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh----hhcCCe
Confidence 347799999999999999999999987 455554
No 206
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.96 E-value=0.00013 Score=81.86 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~G 62 (671)
.++..+.|.|++||||||+||.|.+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999875
No 207
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.96 E-value=0.0011 Score=69.26 Aligned_cols=62 Identities=31% Similarity=0.353 Sum_probs=38.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCC-CcchhhhhccCCCccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI-EPCTLIMDLEGTDGRE 105 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~-~~~~~vld~~g~~~~~ 105 (671)
.+|+|+|+.|+|||||+|.|.|-.+....+..| ++........... .....+.|+.|.....
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~---tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAG---TTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC---CCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCC---ceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 479999999999999999999987543233333 3332211111111 2344567888876533
No 208
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.94 E-value=8.3e-05 Score=87.58 Aligned_cols=125 Identities=7% Similarity=0.018 Sum_probs=66.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCC--CeeeccCceEeccccC-----CCcch-----hhhhccCC----
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK--GRSQTTKGIWMARCAG-----IEPCT-----LIMDLEGT---- 101 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~s--G~~q~~~gi~~~~~~~-----~~~~~-----~vld~~g~---- 101 (671)
..|+++.|+||+||||||++.++.+.. .+.. |.. -+.+..... ..... .+....|.
T Consensus 107 ~~~~~vii~gpTGSGKTtllp~ll~~~----~~~~~~g~~----ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~ 178 (773)
T 2xau_A 107 QNNQIMVFVGETGSGKTTQIPQFVLFD----EMPHLENTQ----VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF 178 (773)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHH----HCGGGGTCE----EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETT
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHHHh----ccccCCCce----EEecCchHHHHHHHHHHHHHHhCCchhheecceecc
Confidence 356799999999999999999987654 2332 210 011100000 00000 00000110
Q ss_pred ----CcccccccchHHHHHHHHHHHHHH---HHHhcccccc-CCChhhhhChhHHHHHHHHHHHhhCCCCcEEEE-EecC
Q 005892 102 ----DGRERGEDDTAFEKQSALFALAVS---DIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF-VIRD 172 (671)
Q Consensus 102 ----~~~~r~~~~~~~qrQrv~iAlAL~---evLlLDEpt~-~LD~~~~~~~~~~~~v~ell~~L~~~~g~TIl~-VtHD 172 (671)
...........++.++.+++..+. ++||+||+.. ++|... ...++..+..... ...+|++ +||+
T Consensus 179 ~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~------~~~~l~~l~~~~~-~~~iIl~SAT~~ 251 (773)
T 2xau_A 179 ENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDI------LMGLLKQVVKRRP-DLKIIIMSATLD 251 (773)
T ss_dssp EEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHH------HHHHHHHHHHHCT-TCEEEEEESCSC
T ss_pred ccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHH------HHHHHHHHHHhCC-CceEEEEecccc
Confidence 000111123456777777765544 8999999985 777554 4444554544433 2456666 4898
Q ss_pred CCccc
Q 005892 173 KTRTP 177 (671)
Q Consensus 173 l~~~~ 177 (671)
.+...
T Consensus 252 ~~~l~ 256 (773)
T 2xau_A 252 AEKFQ 256 (773)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 65443
No 209
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.93 E-value=0.00034 Score=67.81 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~G 62 (671)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 210
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.91 E-value=0.00047 Score=64.41 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.+|+|||||||||||.+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999997544
No 211
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.90 E-value=0.0016 Score=66.82 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++..+.|.||+|+|||||+++|++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999866
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.81 E-value=0.002 Score=76.23 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=61.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcchhhhhccCCCcccccccchHHHHHH
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS 117 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~~vld~~g~~~~~r~~~~~~~qrQr 117 (671)
.+++.+.|+||+|||||||+++|+|.. .+. -+.+.+. +..+... + ....+-+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l----~~~--------~i~v~~~----------~l~~~~~---g---~~~~~l~ 287 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET----GAF--------FFLINGP----------EIMSKLA---G---ESESNLR 287 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT----TCE--------EEEEEHH----------HHSSSST---T---HHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc----CCc--------EEEEEch----------Hhhhhhh---h---hHHHHHH
Confidence 678889999999999999999999987 221 1222221 1111110 0 1112223
Q ss_pred HHHHHHHH---HHHhccccccCCChhhhhC----hhHHHHHHHHHHHhhCCCCcEEEEEecCCCcc
Q 005892 118 ALFALAVS---DIVLINMWCHDIGREQAAN----KPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (671)
Q Consensus 118 v~iAlAL~---evLlLDEpt~~LD~~~~~~----~~~~~~v~ell~~L~~~~g~TIl~VtHDl~~~ 176 (671)
..|..+.. .++++||....+....... ......++.++..+....+..+|.+||+.+.+
T Consensus 288 ~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 288 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 33333333 4889999855443211111 12234445555544444467888888887543
No 213
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.81 E-value=0.00064 Score=64.62 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|++|+|||||++.+.|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999964
No 214
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.81 E-value=0.0005 Score=71.51 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++.+++|.||+|||||||++.|.+++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999998
No 215
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.78 E-value=0.00046 Score=75.75 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|++|+|||||+|.|.|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999986
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.76 E-value=0.00059 Score=66.49 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|.+++|+||+|||||||.+.|....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467799999999999999999998866
No 217
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.72 E-value=0.00071 Score=63.12 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|++|+|||||+|.+.|..+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999764
No 218
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.67 E-value=0.0011 Score=63.75 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|++|+|||||+|.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999754
No 219
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.67 E-value=0.002 Score=66.30 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
...+.|.||+|+|||||.++|++..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.56 E-value=0.0013 Score=65.83 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|.+++|.|++||||||+++.|...+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999999988
No 221
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.00093 Score=64.74 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+++|+|++|||||||.+.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999875
No 222
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.53 E-value=0.0028 Score=67.27 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=25.5
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhcc
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
++ .+|+++.|.||+|||||||+..++..
T Consensus 118 Gl--~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GI--ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SB--CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CC--CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56 78999999999999999999998875
No 223
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.52 E-value=0.0006 Score=76.46 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=27.2
Q ss_pred cccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 29 ~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++++.. .+| +.+|+|+|||||||||.+|.++.
T Consensus 52 ~~~~l~f--~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 52 TQLELEL--GGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp SCEEEEC--CCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeEEEec--CCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555 455 99999999999999999999887
No 224
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.52 E-value=0.0016 Score=68.59 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=25.1
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhcc
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
++ .+|+++.|.||+|||||||+..++..
T Consensus 103 Gl--~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GI--ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SE--ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CC--CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 56 78999999999999999999988864
No 225
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.50 E-value=0.0012 Score=62.29 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|++|+|||||++.|+|..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~ 31 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGEN 31 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 226
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.49 E-value=0.0007 Score=73.09 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=40.8
Q ss_pred EEEEeeeEEecccccccccc--------------ccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 10 TQLIDGDGTFNVSGIEHFIK--------------EVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 10 I~i~nlsk~y~~~~l~~vl~--------------~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.+.|++..|... +..+. ++.+.+ .+|+.++|+||+|+|||||++.|++..
T Consensus 134 i~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi--~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPI--GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCC--BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCCC--ccccccCCCCcccccceeeeeeeee--cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5567777778543 34555 677777 889999999999999999999999875
No 227
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.49 E-value=0.0006 Score=66.84 Aligned_cols=32 Identities=25% Similarity=0.082 Sum_probs=28.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.+|.+++|+|++||||||+.+.|.+.+ .|..|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l----~~~~g 54 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL----VRDRR 54 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH----HHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh----ccccC
Confidence 678899999999999999999999988 44555
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.46 E-value=0.0018 Score=61.90 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=25.6
Q ss_pred ccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 26 ~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++.++++.. ..+ .++|+|++|+|||||++.+.+-.+....|+.|
T Consensus 12 ~~l~~~~~~~--~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~ 56 (190)
T 1m2o_B 12 DVLASLGLWN--KHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH 56 (190)
T ss_dssp --------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCS
T ss_pred HHHHHhhccC--Ccc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCC
Confidence 4556666654 333 67999999999999999999866543344444
No 229
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.45 E-value=0.0015 Score=62.33 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|.++.|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999987
No 230
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.44 E-value=0.0015 Score=64.07 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.+|+|||||||||++.+|.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998666
No 231
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.44 E-value=0.0017 Score=67.70 Aligned_cols=24 Identities=50% Similarity=0.790 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|++|+|||||+|.|.|-.+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~ 32 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKV 32 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCce
Confidence 699999999999999999999775
No 232
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.43 E-value=0.00099 Score=64.34 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=31.2
Q ss_pred ccccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 24 l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
...++.++++.. ..+ .++|+|++|+|||||++.+.|-.+....|+.|
T Consensus 12 ~~~~l~~~~~~~--~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~ 58 (198)
T 1f6b_A 12 FSSVLQFLGLYK--KTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH 58 (198)
T ss_dssp -CHHHHHHTCTT--CCE-EEEEEEETTSSHHHHHHHHSCC------CCCC
T ss_pred HHHHHHHhhccC--CCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCC
Confidence 346777777765 455 47899999999999999999865433334444
No 233
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.43 E-value=0.00096 Score=71.64 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
+++|+|++|||||||+|.|.|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 599999999999999999999873
No 234
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.42 E-value=0.00069 Score=72.06 Aligned_cols=117 Identities=11% Similarity=0.035 Sum_probs=65.3
Q ss_pred cccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCeeeccCceEeccccCCCcch--hhhhccCCCccc-cccc
Q 005892 33 LSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCT--LIMDLEGTDGRE-RGED 109 (671)
Q Consensus 33 l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~q~~~gi~~~~~~~~~~~~--~vld~~g~~~~~-r~~~ 109 (671)
-+. .+|+++.|.|++|+|||||+..++.-. ...|.. ..++........+. ++....+.+... +.+.
T Consensus 41 gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~-----a~~g~~----Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~ 109 (338)
T 4a1f_A 41 SGF--NKGSLVIIGARPSMGKTSLMMNMVLSA-----LNDDRG----VAVFSLEMSAEQLALRALSDLTSINMHDLESGR 109 (338)
T ss_dssp CSB--CTTCEEEEEECTTSCHHHHHHHHHHHH-----HHTTCE----EEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTC
T ss_pred cCC--CCCcEEEEEeCCCCCHHHHHHHHHHHH-----HHcCCe----EEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCC
Confidence 377 889999999999999999998887654 113421 12222111100000 000111222111 1112
Q ss_pred chHHHHHHHHHHHHHH---HHHhccccccCCChhhhhChhHHHHHHHHHHHhhCCC-CcEEEEEec
Q 005892 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-KTTLMFVIR 171 (671)
Q Consensus 110 ~~~~qrQrv~iAlAL~---evLlLDEpt~~LD~~~~~~~~~~~~v~ell~~L~~~~-g~TIl~VtH 171 (671)
....+.+++..|.... ++.+.|+|... ...+...++++.+++ |..+|+|-|
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----------i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----------IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----------HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----------HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3455778887776655 56777877432 334556666665555 788888865
No 235
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.38 E-value=0.0016 Score=61.86 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhcc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
.|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999853
No 236
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.38 E-value=0.00091 Score=68.29 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|++|||||||+|.|.|..+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999873
No 237
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.37 E-value=0.0043 Score=62.44 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.|+|+|+.|+|||||+|.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999865
No 238
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.35 E-value=0.0005 Score=73.69 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=30.7
Q ss_pred eEEEEeeeEEeccccccccccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 9 ~I~i~nlsk~y~~~~l~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.+.++...|+.. .+..++++. ++|+|++|+|||||+|.|+|..
T Consensus 17 ~v~~~~l~~~~~~k---~~~~~~~~~--------I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRK---SVKKGFEFT--------LMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTH---HHHHCCEEC--------EEECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCe---eecCCCCEE--------EEEEcCCCCCHHHHHHHHhCCC
Confidence 46667777666432 344554444 5999999999999999999875
No 239
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.34 E-value=0.00096 Score=76.27 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=36.2
Q ss_pred cccccccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCC
Q 005892 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK 72 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~s 72 (671)
..++..+++.. ..|+.++|+||||+|||||+++|+|+. .+..
T Consensus 47 ~~~l~~l~~~i--~~g~~vll~Gp~GtGKTtlar~ia~~l----~~~~ 88 (604)
T 3k1j_A 47 EHAVEVIKTAA--NQKRHVLLIGEPGTGKSMLGQAMAELL----PTET 88 (604)
T ss_dssp HHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHTS----CCSS
T ss_pred hhhHhhccccc--cCCCEEEEEeCCCCCHHHHHHHHhccC----Cccc
Confidence 35677778888 788999999999999999999999998 5555
No 240
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.30 E-value=0.0022 Score=61.44 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=24.7
Q ss_pred cccccccCCccEEEEEcCCCCChHHHHHHHhcc
Q 005892 31 VKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 31 v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
+++.. .++.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~~~--~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQ--PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CC--CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCC--CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34444 56779999999999999999999876
No 241
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.29 E-value=0.0019 Score=62.16 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+++|+|++|||||||++.|.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999976
No 242
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.28 E-value=0.002 Score=64.32 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999999743
No 243
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.28 E-value=0.0019 Score=60.13 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 244
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.25 E-value=0.0029 Score=59.74 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++|+|+.|+|||||+|.+.|-.+....|+.|
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~ 56 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG 56 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCccccccCCCC
Confidence 58999999999999999999876433333334
No 245
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.11 E-value=0.0051 Score=65.81 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=25.1
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++ .+|.++.|.|++|+|||||...++.-.
T Consensus 59 Gl--~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 59 GL--PMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SE--ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred Cc--cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46 788999999999999999998887643
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.10 E-value=0.0027 Score=58.79 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 005892 42 VVSIMGPQSSGKSTLLNHL 60 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L 60 (671)
+++|.||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 247
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.08 E-value=0.0035 Score=58.07 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
-++|+|+.|+|||||++.+.|-.+....++.|
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~ 37 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLG 37 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-----CCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcCCCccccCccc
Confidence 48999999999999999999977533233444
No 248
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.04 E-value=0.0023 Score=72.25 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=31.2
Q ss_pred cccccccccCCccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 29 KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 29 ~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
..+++.. +|.+++|+||+|+|||||+++|++.. .+..|+
T Consensus 100 ~~~~~~~---~g~~vll~Gp~GtGKTtlar~ia~~l----~~~~~~ 138 (543)
T 3m6a_A 100 QKLTKSL---KGPILCLAGPPGVGKTSLAKSIAKSL----GRKFVR 138 (543)
T ss_dssp HHHSSSC---CSCEEEEESSSSSSHHHHHHHHHHHH----TCEEEE
T ss_pred HHhcccC---CCCEEEEECCCCCCHHHHHHHHHHhc----CCCeEE
Confidence 4444443 68899999999999999999999998 555554
No 249
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.04 E-value=0.0024 Score=58.28 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|+.|+|||||++.+.|-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999875
No 250
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.02 E-value=0.0056 Score=65.57 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~G 62 (671)
.+.+|+|||||||||||-+|.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999974
No 251
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.01 E-value=0.0044 Score=57.14 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++|+|+.|+|||||++.+.+-.+....|+.|
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~ 40 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIG 40 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc
Confidence 58999999999999999998766543344444
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.00 E-value=0.0034 Score=59.12 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999865
No 253
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.00 E-value=0.0047 Score=58.64 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.|.|-.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998664
No 254
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.98 E-value=0.0035 Score=59.36 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998754
No 255
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.96 E-value=0.0045 Score=56.76 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=24.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
-++|+|+.|+|||||++.+.+-.|....|+.|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~ 33 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 33 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccCcCc
Confidence 37999999999999999998866543344444
No 256
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.95 E-value=0.0055 Score=62.92 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|++|+|||||+|.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999975
No 257
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.95 E-value=0.0028 Score=58.26 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||+|.+.|..+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 479999999999999999998764
No 258
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.89 E-value=0.0039 Score=61.01 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl 63 (671)
-+++|.|++||||||+++.|+++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHc
Confidence 48999999999999999999873
No 259
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.88 E-value=0.002 Score=61.04 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=24.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++|+|++|+|||||++.+.|-.+....|+.|
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 68999999999999999999865432234444
No 260
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.87 E-value=0.0091 Score=60.67 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.-+.|.||+|+|||||++.|++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45568999999999999999999876
No 261
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.87 E-value=0.0039 Score=59.74 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999865
No 262
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.87 E-value=0.0021 Score=68.75 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=31.2
Q ss_pred cccccccccccccCCccE--EEEEcCCCCChHHHHHHHhccc
Q 005892 25 EHFIKEVKLSDCGLSYAV--VSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 25 ~~vl~~v~l~~~g~~gei--vaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..++..+++.+ .+|++ ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34566666666 66767 9999999999999999999876
No 263
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.85 E-value=0.0028 Score=66.08 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=27.1
Q ss_pred cccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 31 VKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 31 v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++.. . +.+++++|+||+||||++..|++..
T Consensus 92 i~~~~--~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDK--I-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSS--S-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCC--C-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 55543 4 8899999999999999999999988
No 264
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.84 E-value=0.0031 Score=63.69 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+.++.|+|++||||||+.+.|++.+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999999876
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.84 E-value=0.0038 Score=63.23 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|+||+|||||||.+.|++-.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998755
No 266
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.80 E-value=0.011 Score=64.80 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.|+|+|+.|+|||||+|.|.|-.+....+..|
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g 36 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPG 36 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEECC-------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecCCCC
Confidence 68999999999999999999976432233444
No 267
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.77 E-value=0.0043 Score=60.30 Aligned_cols=23 Identities=48% Similarity=0.770 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.|+||+|||||||++.|..-.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999997654
No 268
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.76 E-value=0.0044 Score=69.29 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=27.4
Q ss_pred cccccccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 27 vl~~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.++++.. .+| +.|+||+|+|||||+++|+|..
T Consensus 55 ~~~~lg~~i--p~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 55 RFHEMGARI--PKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp GTTTTSCCC--CSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred hhhhccCCC--Cce--EEEECCCCCCHHHHHHHHHHHh
Confidence 344455555 555 8999999999999999999987
No 269
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.75 E-value=0.0042 Score=67.37 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+..++|+|++|+|||||+|.|.|..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4479999999999999999999985
No 270
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.75 E-value=0.0048 Score=57.82 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~G 62 (671)
++.|.|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 789999999999999999986
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.73 E-value=0.005 Score=58.54 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998644
No 272
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0045 Score=58.71 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.|.|-.+
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999764
No 273
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.71 E-value=0.0045 Score=58.41 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 274
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.70 E-value=0.0048 Score=60.00 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.|+|+|+.|+|||||+|.|.|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999875
No 275
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.66 E-value=0.0049 Score=56.51 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 479999999999999999998664
No 276
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.66 E-value=0.005 Score=62.00 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl 63 (671)
+++|.||+||||||+.+.|+..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999944
No 277
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0055 Score=56.27 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||+|.+.|-.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999998653
No 278
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.62 E-value=0.0062 Score=63.79 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=26.4
Q ss_pred ccccccccCCccEEEEEcCCCCChHHHHHHHhcc
Q 005892 30 EVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 30 ~v~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
.+.-+. .+|+++.|.|++|+|||||+..++.-
T Consensus 60 ~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 60 RMTYGY--KRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 333467 88999999999999999998887743
No 279
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.61 E-value=0.0053 Score=55.96 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~ 28 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTF 28 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987553
No 280
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0071 Score=57.60 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~ 48 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHF 48 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 281
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.60 E-value=0.0049 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.+.|-.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 479999999999999999998654
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.60 E-value=0.0024 Score=61.96 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.|++||||||+++.|...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 283
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.59 E-value=0.005 Score=67.42 Aligned_cols=32 Identities=25% Similarity=0.155 Sum_probs=27.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhcccCCCCCCCCCe
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (671)
++.+++|+|+|||||||++..|++.+ .+..|+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l----~~~g~~ 128 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY----KGKGRR 128 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH----HTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH----HHcCCe
Confidence 57899999999999999999999998 565453
No 284
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.59 E-value=0.0034 Score=63.80 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|+.|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999976
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.59 E-value=0.0056 Score=57.96 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.++.|+|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998543
No 286
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.58 E-value=0.0064 Score=58.40 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+|-+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998654
No 287
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.57 E-value=0.0055 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~ 29 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEF 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcc
Confidence 479999999999999999998653
No 288
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.57 E-value=0.0071 Score=61.56 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||+|.|+|-.+
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999764
No 289
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.56 E-value=0.006 Score=58.41 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+++|+|++|||||||++.|.+.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999999876
No 290
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.55 E-value=0.0063 Score=61.12 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-+.|.||+|+|||||+++|++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 38899999999999999999976
No 291
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.54 E-value=0.0067 Score=58.40 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
|-+++|.|+.||||||+.+.|+..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998865
No 292
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.54 E-value=0.0067 Score=58.16 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhcc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
..+++|+|+.||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999864
No 293
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.54 E-value=0.0059 Score=56.09 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||+|.+.|-.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 294
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.53 E-value=0.0074 Score=61.16 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||+|.|.|-.+
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999763
No 295
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.53 E-value=0.0034 Score=58.78 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=24.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++|+|++|+|||||++.+.+-.+....|+.|
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~ 51 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIGEVVTTKPTIG 51 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSEEEEECSSTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCccCCcCc
Confidence 68999999999999999998654322234444
No 296
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.52 E-value=0.0067 Score=56.56 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=25.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
-++|+|+.|+|||||++.+.+-.|....|+.|
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~ 40 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTES 40 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCCCSSCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCcCCCcc
Confidence 58999999999999999999877644344444
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.51 E-value=0.006 Score=55.92 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998664
No 298
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.51 E-value=0.003 Score=66.41 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=29.6
Q ss_pred ccccccccccccCCccE--EEEEcCCCCChHHHHHHHhccc
Q 005892 26 HFIKEVKLSDCGLSYAV--VSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 26 ~vl~~v~l~~~g~~gei--vaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++..++..+ ..|++ +.+.||+|+|||||++++++.+
T Consensus 32 ~~~~~L~~~i--~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 32 EVITTVRKFV--DEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHH--HTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4555555555 45556 8999999999999999999987
No 299
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.49 E-value=0.0059 Score=56.67 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.|.|-.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998664
No 300
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.48 E-value=0.0058 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKF 28 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 479999999999999999998764
No 301
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.48 E-value=0.0066 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-++|+|+.|+|||||++.+.|..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999998765
No 302
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.47 E-value=0.0042 Score=61.18 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.|+|+|+.|+|||||+|.+.|-.+
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~~ 54 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRANV 54 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998764
No 303
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.47 E-value=0.0065 Score=55.88 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENKF 31 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998654
No 304
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.46 E-value=0.0072 Score=57.27 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.++.|+|+.||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998654
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.46 E-value=0.0067 Score=57.42 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 306
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.46 E-value=0.0074 Score=62.43 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+.++.|.||+|||||||.+.|+.-.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998644
No 307
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.45 E-value=0.0065 Score=56.45 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.+.|-.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~~ 33 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDKY 33 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998664
No 308
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.45 E-value=0.0074 Score=57.48 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++-+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45589999999999999999998654
No 309
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.45 E-value=0.0067 Score=58.36 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 310
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.44 E-value=0.0065 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~ 28 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999997653
No 311
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.43 E-value=0.0047 Score=63.33 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|||||||+|.|.|..+
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~ 28 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQ 28 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999763
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.43 E-value=0.0059 Score=57.85 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|+.|+|||||+|.|.|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999865
No 313
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.42 E-value=0.0068 Score=56.27 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~~ 32 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNKF 32 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999998664
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.0079 Score=57.02 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999987543
No 315
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.38 E-value=0.0066 Score=56.37 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~~ 34 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYF 34 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998653
No 316
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.38 E-value=0.011 Score=55.69 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++|+|+.|+|||||++.+.|-......|+.|
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~ 51 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLG 51 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccccCc
Confidence 68999999999999999999755333334444
No 317
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.37 E-value=0.0078 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+|-+++|.|+.||||||+.+.|.-.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998643
No 318
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.33 E-value=0.0075 Score=55.26 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQF 31 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 479999999999999999997553
No 319
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.32 E-value=0.0099 Score=55.17 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhcccC
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.-.++|+|+.|+|||||++.+.|-.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~ 33 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKV 33 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 34789999999999999999998664
No 320
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.30 E-value=0.0077 Score=56.42 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.|.|-.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998653
No 321
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.30 E-value=0.0077 Score=56.79 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.|.|-.+
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999999764
No 322
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.29 E-value=0.0085 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 323
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.28 E-value=0.0071 Score=56.84 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~ 26 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKV 26 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 479999999999999999999764
No 324
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.28 E-value=0.0098 Score=56.37 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccCCC
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTNFRE 67 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~f~~ 67 (671)
-.|+|+|+.|+|||||++.+.|-.|..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~ 44 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSS 44 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC---
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 368999999999999999999977543
No 325
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.27 E-value=0.012 Score=54.65 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998764
No 326
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.26 E-value=0.011 Score=56.03 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|+.|+|||||++.+.|-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999876
No 327
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.26 E-value=0.009 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+|-+++|.|+.||||||+.+.|.-.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998654
No 328
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.25 E-value=0.0084 Score=61.95 Aligned_cols=25 Identities=40% Similarity=0.795 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccC
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-.++|+|+.|+|||||+|.|.|..+
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3699999999999999999999763
No 329
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.22 E-value=0.0083 Score=56.29 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGKF 36 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998654
No 330
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.22 E-value=0.0092 Score=55.41 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGT
T ss_pred EEEEECcCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998664
No 331
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.18 E-value=0.0082 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~~ 39 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDSF 39 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999997654
No 332
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.17 E-value=0.0075 Score=61.56 Aligned_cols=23 Identities=43% Similarity=0.665 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-++|+|+.|+|||||+|.|+|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999875
No 333
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.11 E-value=0.0095 Score=55.16 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 334
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.10 E-value=0.014 Score=54.48 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998544
No 335
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.09 E-value=0.029 Score=60.11 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=23.9
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhcc
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
++ .+|.++.|.||.|+|||||+..++.-
T Consensus 70 Gl--~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GI--PRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SE--ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred Cc--cCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 56 78899999999999999998776643
No 336
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.08 E-value=0.0097 Score=56.18 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.|.|-.+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998653
No 337
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.08 E-value=0.0098 Score=55.48 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~~ 43 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDEF 43 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC
Confidence 589999999999999999998654
No 338
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.07 E-value=0.023 Score=62.37 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+..+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999876
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.07 E-value=0.0089 Score=56.34 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=18.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++.++.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34589999999999999999998544
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.06 E-value=0.011 Score=56.48 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.+++|.|+.||||||+.+.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998754
No 341
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.04 E-value=0.015 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998664
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.03 E-value=0.012 Score=55.88 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 343
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.03 E-value=0.011 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 344
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.03 E-value=0.013 Score=62.72 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|.+|+|||||+|.|.|-.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999954
No 345
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.01 E-value=0.0081 Score=56.52 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=25.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++|+|+.|+|||||++.+.|-.|....|+.|
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~ 54 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG 54 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTSCEEEECCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCCcCc
Confidence 58999999999999999999866433334444
No 346
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.00 E-value=0.01 Score=56.53 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~ 39 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEF 39 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999997653
No 347
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.99 E-value=0.012 Score=57.37 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+||.||||||+.+.|+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996543
No 348
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.98 E-value=0.01 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 349
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.94 E-value=0.011 Score=56.46 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.+.|-.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 350
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.94 E-value=0.011 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-++|+|+.|+|||||+|.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57999999999999999999865
No 351
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.93 E-value=0.011 Score=55.06 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.|+.||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 352
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.011 Score=56.12 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Confidence 589999999999999999998653
No 353
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.91 E-value=0.012 Score=55.92 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|++|+|||||++.+.+-.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999988776554
No 354
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.90 E-value=0.012 Score=60.97 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++..+.|.||+|+|||||+++|++..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 566789999999999999999999976
No 355
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.90 E-value=0.012 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.|
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~ 47 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDSF 47 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 356
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.87 E-value=0.01 Score=57.08 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998765
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.87 E-value=0.015 Score=55.93 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+-+++|+|+.||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345589999999999999999998654
No 358
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.86 E-value=0.011 Score=55.88 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.+.+-.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~~ 41 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNEV 41 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999996553
No 359
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.86 E-value=0.012 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.+.+-.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 579999999999999999997653
No 360
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.84 E-value=0.012 Score=57.00 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.|.+-.+
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 361
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.83 E-value=0.013 Score=55.41 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+++|.|+.||||||+.+.|+..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998654
No 362
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.83 E-value=0.012 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998764
No 363
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.82 E-value=0.015 Score=55.93 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
...+++|.|+.||||||+.+.|+-..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999998544
No 364
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.80 E-value=0.013 Score=55.44 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998664
No 365
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.80 E-value=0.015 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 366
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.79 E-value=0.013 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~ 30 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAF 30 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999987553
No 367
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.79 E-value=0.015 Score=54.28 Aligned_cols=26 Identities=27% Similarity=0.223 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..++++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998754
No 368
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.78 E-value=0.014 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+||.||||||+.+.|+.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.77 E-value=0.016 Score=56.82 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45589999999999999999998754
No 370
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.76 E-value=0.013 Score=56.88 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-+++|+|+.|+|||||++.|.+-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999865
No 371
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.75 E-value=0.014 Score=57.49 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++-+++|+|+.||||||+.+.|+.-+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999998544
No 372
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.73 E-value=0.014 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.|
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 373
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.72 E-value=0.015 Score=58.55 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-+++|.|+.||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998743
No 374
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.70 E-value=0.014 Score=55.14 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~~ 45 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGRF 45 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999987654
No 375
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.70 E-value=0.013 Score=55.78 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.|.|-.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~~ 51 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDTF 51 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999998664
No 376
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.013 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.|
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCcCHHHHHHHHhcCCC
Confidence 589999999999999999998763
No 377
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.66 E-value=0.013 Score=56.08 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 589999999999999999998764
No 378
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.65 E-value=0.014 Score=55.23 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|+|+.||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998654
No 379
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.63 E-value=0.015 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998664
No 380
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.63 E-value=0.015 Score=59.04 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||+|.|.|..+
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Confidence 589999999999999999999763
No 381
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.63 E-value=0.014 Score=62.78 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|++|+|||||+|.|.|..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999975
No 382
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.63 E-value=0.013 Score=59.86 Aligned_cols=24 Identities=38% Similarity=0.798 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.|+|+|..|+|||||+|.|.|-.+
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999874
No 383
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.63 E-value=0.014 Score=56.06 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 384
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.62 E-value=0.01 Score=56.02 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
-++|+|+.|+|||||++.+.+-.+....|+.|
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~ 55 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG 55 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSCCEEECSSTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc
Confidence 68999999999999999997655432234444
No 385
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.60 E-value=0.015 Score=55.90 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENKF 50 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC---
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998653
No 386
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.59 E-value=0.022 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.+.+-.|
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998764
No 387
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.58 E-value=0.015 Score=57.10 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+-++.|+|+.||||||+.+.|+--+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999998654
No 388
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.58 E-value=0.016 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~~ 33 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNTF 33 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987653
No 389
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.58 E-value=0.015 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-|+|+|+.|+|||||++.+.|-.+
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~~ 45 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDKF 45 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998664
No 390
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.57 E-value=0.017 Score=56.12 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhcc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
.-+++|+|+.||||||+.+.|.-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 348999999999999999999865
No 391
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.56 E-value=0.019 Score=55.96 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 392
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.54 E-value=0.016 Score=54.58 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|+.|+|||||++.+.+-.|
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~ 40 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDTF 40 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 393
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.54 E-value=0.016 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998654
No 394
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.53 E-value=0.016 Score=55.42 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.|
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~~ 53 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNEF 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 689999999999999999998664
No 395
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.51 E-value=0.016 Score=54.92 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 396
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.46 E-value=0.016 Score=56.17 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987664
No 397
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.40 E-value=0.021 Score=57.87 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998754
No 398
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.37 E-value=0.019 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998663
No 399
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.018 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.|-.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998653
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.34 E-value=0.021 Score=56.30 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
No 401
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.33 E-value=0.014 Score=60.58 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.-+++|.||+||||||+.+.|...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999998754
No 402
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.33 E-value=0.019 Score=54.41 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 589999999999999999987654
No 403
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.31 E-value=0.02 Score=54.53 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~~ 45 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNGY 45 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999997653
No 404
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.30 E-value=0.013 Score=54.77 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=9.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~~ 33 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDAF 33 (183)
T ss_dssp EEEEECCCCC--------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987653
No 405
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.28 E-value=0.02 Score=56.83 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~G 62 (671)
..|+.++|.||+||||||++..+..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 3578999999999999998887653
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.27 E-value=0.02 Score=58.85 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~G 62 (671)
.-+++|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 407
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.25 E-value=0.02 Score=55.67 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~~ 59 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAF 59 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998653
No 408
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.20 E-value=0.019 Score=55.65 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 409
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.18 E-value=0.021 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-++|+|+.|+|||||++.+.|-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999854
No 410
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.14 E-value=0.019 Score=61.68 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.-++|+||+|||||||++.|.+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34457999999999999999999876
No 411
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.12 E-value=0.02 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccC
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-.++|+|+.|+|||||++.+.+-.|
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~~ 54 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGEI 54 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCc
Confidence 3689999999999999999987553
No 412
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.11 E-value=0.013 Score=56.85 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-++|+|+.|+|||||+|.|.|-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999755
No 413
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.013 Score=63.03 Aligned_cols=23 Identities=52% Similarity=0.653 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-|||+|...+|||||+|.|.|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999976
No 414
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.09 E-value=0.021 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998664
No 415
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.08 E-value=0.026 Score=54.28 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+.|.||+|+|||||++.|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999876
No 416
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.07 E-value=0.028 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhcc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
++-+++|+||.||||||+.+.|+--
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999999753
No 417
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.01 E-value=0.023 Score=59.11 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+..+.|.||+|+|||||++.|++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999999876
No 418
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.01 E-value=0.026 Score=57.55 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|.+|+|||||+|.|.|-.
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTC
T ss_pred heEEeCCCCCCHHHHHHHHhccc
Confidence 78999999999999999999976
No 419
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.023 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999997654
No 420
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.00 E-value=0.03 Score=53.94 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+.|.||.|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 488999999999999999998765
No 421
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.14 Score=56.12 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.=+.+.||.|+|||+|.++|++-.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh
Confidence 457899999999999999999976
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.93 E-value=0.026 Score=55.01 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 423
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.89 E-value=0.034 Score=51.69 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+..+.|.||.|+|||||++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998765
No 424
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.028 Score=55.29 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.|+|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 425
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.87 E-value=0.026 Score=54.99 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccC
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-.++|+|+.|+|||||++.+.+-.|
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999997663
No 426
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.81 E-value=0.013 Score=55.85 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=4.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl 63 (671)
-++|+|+.|+|||||++.+.|-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999887
No 427
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.80 E-value=0.014 Score=56.80 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHH-Hhccc
Q 005892 42 VVSIMGPQSSGKSTLLNH-LFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~-L~Gl~ 64 (671)
.++|+|+.|+|||||++. +.|..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999 55543
No 428
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.78 E-value=0.03 Score=54.79 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++-++.|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999997644
No 429
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.75 E-value=0.027 Score=54.13 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~~ 54 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGAF 54 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhhCCC
Confidence 589999999999999999988664
No 430
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.03 Score=54.65 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 431
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.15 Score=55.86 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.=+.|.||.|+|||+|.++|++-.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999999999999999976
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.67 E-value=0.032 Score=57.15 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~G 62 (671)
++.|.|++||||||+.+.|+-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999986
No 433
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.12 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
=+.+.||.|+|||+|.++|++-.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 434
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.14 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
=+.+.||.|+|||+|.++|++-.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHhh
Confidence 37899999999999999999976
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.52 E-value=0.041 Score=54.49 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+-.+.|+|+.||||||+.+.|+--+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998654
No 436
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.51 E-value=0.028 Score=61.42 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.|+|+|..|+|||||+|.|.|-.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 437
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.51 E-value=0.035 Score=58.94 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.||+|||||||.+.|+..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 79999999999999999998765
No 438
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.47 E-value=0.043 Score=60.14 Aligned_cols=30 Identities=10% Similarity=-0.047 Sum_probs=26.1
Q ss_pred cccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 33 LSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 33 l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-|. .+|+++.|.|++|+|||||+..++.-.
T Consensus 195 gGl--~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 195 GTL--GPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCC--CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCc--CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467 789999999999999999998887654
No 439
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.46 E-value=0.04 Score=54.38 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|-+++|.|+.||||||+++.|...+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998766
No 440
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.44 E-value=0.033 Score=54.20 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999998754
No 441
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.44 E-value=0.025 Score=59.98 Aligned_cols=24 Identities=38% Similarity=0.798 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
.++|+|.+|+|||||+|.|.|..|
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999999764
No 442
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.44 E-value=0.032 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998654
No 443
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.41 E-value=0.043 Score=54.76 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=24.7
Q ss_pred cCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 37 GLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 37 g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.+|-++.|.|+.||||||+.+.|...+
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999999998766
No 444
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.36 E-value=0.036 Score=53.94 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~~ 52 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDCY 52 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987654
No 445
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.33 E-value=0.034 Score=53.46 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-++|+|+.|+|||||++.+.+-.|
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~~ 34 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNKF 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999997654
No 446
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.29 E-value=0.022 Score=63.26 Aligned_cols=23 Identities=48% Similarity=0.705 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.|+|+|+.|+|||||+|.|.|-.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999874
No 447
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.25 E-value=0.02 Score=63.39 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-.|+|+|+.|+|||||+|.|.|-.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 359999999999999999999965
No 448
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.21 E-value=0.051 Score=53.95 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+..|+.|+||.||||+|..+.|+--.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455689999999999999999988543
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.20 E-value=0.045 Score=59.50 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
....++.|+|++||||||+.+.|+.-.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999987643
No 450
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.13 E-value=0.041 Score=55.04 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+|-++.|.|+.||||||+++.|...+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998765
No 451
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.10 E-value=0.047 Score=54.93 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|.+++|.|+.||||||+++.|...+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998766
No 452
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.07 E-value=0.051 Score=53.43 Aligned_cols=27 Identities=26% Similarity=0.159 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..|..+.|+||+|||||||...|+.-.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 346689999999999999999887543
No 453
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.00 E-value=0.045 Score=50.86 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
...+.|.||.|+|||||++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999998765
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.94 E-value=0.05 Score=54.04 Aligned_cols=25 Identities=36% Similarity=0.311 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+-+++|.|+.||||||+++.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998765
No 455
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.92 E-value=0.053 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+|-++.|-|+.||||||+++.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36689999999999999999998876
No 456
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.90 E-value=0.049 Score=60.16 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+|+.++|+||+|+|||||++.|++-.
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 468899999999999999999998765
No 457
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.86 E-value=0.038 Score=55.76 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++-+++|.|+.||||||+.+.|...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999998765
No 458
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.80 E-value=0.049 Score=56.11 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-.++|+|.+|+|||||+|.|.|-.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999975
No 459
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.79 E-value=0.054 Score=57.08 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++.|+||+|||||||.+.|+.-.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999999765
No 460
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.76 E-value=0.059 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+++|+||+|||||||...|+--.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 478999999999999999998644
No 461
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.74 E-value=0.056 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++.|+||.||||+|..+.|+--.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998544
No 462
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=92.71 E-value=0.016 Score=55.36 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-++|+|+.|+|||||+|.|.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998865
No 463
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.54 E-value=0.051 Score=58.82 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++|+|..|+|||||+|.|.|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999875
No 464
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.53 E-value=0.064 Score=53.17 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+|-++.|.|+.||||||+++.|.-.+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 465
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.51 E-value=0.047 Score=59.81 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+++|+|++|+|||||++.|++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999976
No 466
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.49 E-value=0.058 Score=57.26 Aligned_cols=26 Identities=31% Similarity=0.198 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.-+++|+|+.|+|||||++.|++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998765
No 467
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.44 E-value=0.11 Score=61.48 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+.|.||+|+|||+|.+.|+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999987
No 468
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.41 E-value=0.069 Score=56.59 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++.++.|+||.|||||||...|+--+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 44589999999999999999998765
No 469
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.41 E-value=0.11 Score=65.73 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=26.1
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++ .+|+++.|.||+|+|||||+..++...
T Consensus 728 Gl--~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GL--PMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SE--ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred Cc--CCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 46 889999999999999999999998765
No 470
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.40 E-value=0.064 Score=55.81 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 005892 43 VSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 43 vaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.|.||+|+|||||++.+++..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 471
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.61 E-value=0.024 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
-++|+|+.|+|||||++.+.+-.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 58999999999999999998755
No 472
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.38 E-value=0.061 Score=55.87 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl 63 (671)
-++|+|+.|+|||||++.++|-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998875
No 473
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.33 E-value=0.055 Score=56.72 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+..+.|.||.|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999999765
No 474
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=92.23 E-value=0.026 Score=62.69 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.|+|+|+.|+|||||+|.|.|-.
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECcCCCcHHHHHHHHHCCC
Confidence 68999999999999999999975
No 475
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.22 E-value=0.078 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.-+.|.||.|+|||||++.|+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999865
No 476
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.19 E-value=0.072 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.++.|+||+|||||||...|+.-.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 378999999999999999998654
No 477
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=92.12 E-value=0.06 Score=60.76 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccC
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~f 65 (671)
-.|+|+|..|+|||||+|.|.|-.+
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3799999999999999999999764
No 478
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.95 E-value=0.13 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..-+.|.||+|+|||++.+.|....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 3468899999999999999999866
No 479
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.76 E-value=0.28 Score=53.53 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 005892 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 41 eivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.=+.+.||.|+|||+|.++|++-.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHHh
Confidence 348899999999999999999876
No 480
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.71 E-value=0.076 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhcc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGT 63 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl 63 (671)
+..++++|+.|+|||||+|.|.|.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 346899999999999999999997
No 481
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.70 E-value=0.23 Score=54.73 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+-.=+.|.||.|+|||+|.++|++-.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 34457899999999999999999976
No 482
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.61 E-value=0.087 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.|.||.|+|||||++.++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998754
No 483
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.57 E-value=0.13 Score=56.46 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.-.++|+|..|+|||||+|.+.|-.
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cceeEEecCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999764
No 484
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.48 E-value=0.045 Score=64.62 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.8
Q ss_pred ccccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 32 KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 32 ~l~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++. .++..+.|.||+|+|||||.++|++..
T Consensus 505 ~~~~--~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGM--TPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCC--CCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCC--CCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 3444 577789999999999999999999987
No 485
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.42 E-value=0.1 Score=50.11 Aligned_cols=25 Identities=36% Similarity=0.305 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCChHHHH-HHHhcc
Q 005892 39 SYAVVSIMGPQSSGKSTLL-NHLFGT 63 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLL-n~L~Gl 63 (671)
+|.++.+.||.||||||++ +++...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999997 555443
No 486
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.42 E-value=0.098 Score=47.78 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.-|.|.||.|+|||+|.+.|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3458899999999999999998865
No 487
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.39 E-value=0.092 Score=55.07 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~G 62 (671)
.|.-++|+|++|+|||||...|.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 466799999999999999999886
No 488
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=91.38 E-value=0.13 Score=59.62 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+-.|+|+|+.|+|||||+|.|.|-.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999999975
No 489
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.29 E-value=0.094 Score=54.55 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=24.7
Q ss_pred cccccCCccEEEEEcCCCCChHHHHHHHhc
Q 005892 33 LSDCGLSYAVVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 33 l~~~g~~geivaIlGpNGSGKSTLLn~L~G 62 (671)
-++ .+|+++.|.||+|+|||||+..++.
T Consensus 93 GGl--~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGL--ESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSE--ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCc--cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 356 7899999999999999999988875
No 490
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.28 E-value=0.11 Score=53.26 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
..+..+.|.||.|+|||||.+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999988776
No 491
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.20 E-value=0.05 Score=54.66 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 005892 43 VSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 43 vaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+.|.||+|+|||||++.|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999999865
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.14 E-value=0.12 Score=50.65 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
|.+++|=|+-||||||+++.|.-.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 3488999999999999999999876
No 493
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=91.13 E-value=0.082 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhccc
Q 005892 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 40 geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+..++++|..|+|||||+|.|.|..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhh
Confidence 3468999999999999999999973
No 494
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.13 E-value=0.12 Score=51.38 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 38 ~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
.+.-++.+.|..|+|||||++.|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445589999999999999999999665
No 495
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.09 E-value=0.098 Score=56.74 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+++|.||+|||||||.+.|+--.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 78999999999999999998654
No 496
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.04 E-value=0.31 Score=62.50 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=25.0
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHHhccc
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
++ .+|.++.|.||+|+|||||+-.++.-.
T Consensus 379 Gl--~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 379 GL--PMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp SE--ETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cc--cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46 789999999999999999988776544
No 497
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.99 E-value=0.15 Score=50.02 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.1
Q ss_pred ccccCCccEEEEEcCCCCChHHHHHHH
Q 005892 34 SDCGLSYAVVSIMGPQSSGKSTLLNHL 60 (671)
Q Consensus 34 ~~~g~~geivaIlGpNGSGKSTLLn~L 60 (671)
|+ .+|+++.|.|+.|+|||||+-.+
T Consensus 26 Gl--~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GF--PEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SE--ETTCEEEEECCTTSSHHHHHHHH
T ss_pred CC--CCCeEEEEEeCCCCCHHHHHHHH
Confidence 66 78999999999999999997654
No 498
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.98 E-value=0.11 Score=57.89 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhccc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~Gl~ 64 (671)
+..+++|+|++|+|||||++.|+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999544
No 499
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.94 E-value=0.12 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhc
Q 005892 39 SYAVVSIMGPQSSGKSTLLNHLFG 62 (671)
Q Consensus 39 ~geivaIlGpNGSGKSTLLn~L~G 62 (671)
.|.-+.|.|++|+|||||.-.|..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999877653
No 500
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=90.90 E-value=0.16 Score=55.97 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=25.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCCCCCC
Q 005892 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (671)
Q Consensus 42 ivaIlGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (671)
.++|+|..|+|||||++.+.|-.+....|+.|
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~ 355 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVG 355 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcCCccc
Confidence 58999999999999999999876543334444
Done!