Query 005894
Match_columns 671
No_of_seqs 418 out of 2670
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 15:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 8.9E-55 1.9E-59 449.5 28.3 278 270-569 1-298 (299)
2 cd08571 GDPD_SHV3_plant Glycer 100.0 7.4E-53 1.6E-57 443.0 28.1 296 270-570 1-302 (302)
3 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 1.4E-52 3.1E-57 440.8 28.8 298 270-570 1-300 (300)
4 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 7.3E-52 1.6E-56 427.8 24.5 255 8-265 30-298 (299)
5 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 2.4E-49 5.2E-54 417.7 28.0 285 270-564 1-309 (309)
6 cd08600 GDPD_EcGlpQ_like Glyce 100.0 1.7E-47 3.7E-52 405.2 27.5 283 270-565 1-318 (318)
7 cd08559 GDPD_periplasmic_GlpQ_ 100.0 1.5E-47 3.3E-52 403.1 26.5 278 270-564 1-296 (296)
8 PRK11143 glpQ glycerophosphodi 100.0 4.1E-47 8.9E-52 406.3 27.8 294 267-573 24-353 (355)
9 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 1.3E-46 2.8E-51 400.8 25.2 299 269-571 16-354 (356)
10 cd08601 GDPD_SaGlpQ_like Glyce 100.0 2.6E-45 5.6E-50 379.1 24.7 248 271-571 2-255 (256)
11 cd08580 GDPD_Rv2277c_like Glyc 100.0 3.3E-46 7.2E-51 383.9 17.0 238 270-566 1-262 (263)
12 cd08581 GDPD_like_1 Glyceropho 100.0 6.2E-45 1.4E-49 369.4 24.2 228 272-564 1-229 (229)
13 PRK09454 ugpQ cytoplasmic glyc 100.0 2E-44 4.4E-49 370.6 25.9 237 269-571 7-246 (249)
14 cd08612 GDPD_GDE4 Glycerophosp 100.0 2E-44 4.3E-49 380.2 25.9 253 268-572 25-299 (300)
15 cd08562 GDPD_EcUgpQ_like Glyce 100.0 6.2E-44 1.3E-48 362.7 25.1 228 272-564 1-229 (229)
16 cd08568 GDPD_TmGDE_like Glycer 100.0 3.9E-44 8.4E-49 363.5 22.4 220 271-566 1-225 (226)
17 cd08563 GDPD_TtGDE_like Glycer 100.0 1.1E-43 2.4E-48 361.1 25.7 229 270-564 1-230 (230)
18 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 1.1E-43 2.4E-48 365.4 23.8 244 269-563 1-252 (252)
19 cd08564 GDPD_GsGDE_like Glycer 100.0 2.9E-43 6.2E-48 365.5 24.8 252 268-571 2-264 (265)
20 cd08565 GDPD_pAtGDE_like Glyce 100.0 1.4E-43 3.1E-48 360.9 21.5 234 272-567 1-234 (235)
21 cd08610 GDPD_GDE6 Glycerophosp 100.0 2.4E-43 5.1E-48 370.9 23.7 254 268-572 21-283 (316)
22 cd08579 GDPD_memb_like Glycero 100.0 3.8E-43 8.2E-48 354.8 22.2 219 272-564 1-220 (220)
23 cd08608 GDPD_GDE2 Glycerophosp 100.0 7E-43 1.5E-47 371.0 25.2 252 269-572 1-261 (351)
24 cd08582 GDPD_like_2 Glyceropho 100.0 1E-42 2.2E-47 354.7 24.6 230 272-566 1-233 (233)
25 cd08573 GDPD_GDE1 Glycerophosp 100.0 1.2E-42 2.7E-47 358.7 24.8 232 272-563 1-257 (258)
26 cd08609 GDPD_GDE3 Glycerophosp 100.0 2.4E-42 5.1E-47 363.5 25.0 251 269-574 26-285 (315)
27 cd08575 GDPD_GDE4_like Glycero 100.0 3E-43 6.6E-48 364.7 17.5 243 270-566 1-263 (264)
28 cd08606 GDPD_YPL110cp_fungi Gl 100.0 3.7E-42 8.1E-47 361.2 25.6 257 270-572 2-285 (286)
29 cd08572 GDPD_GDE5_like Glycero 100.0 3E-42 6.5E-47 361.8 24.3 263 271-564 1-293 (293)
30 cd08567 GDPD_SpGDE_like Glycer 100.0 4.6E-42 9.9E-47 356.2 24.4 253 271-566 2-263 (263)
31 cd08605 GDPD_GDE5_like_1_plant 100.0 5.5E-42 1.2E-46 359.1 24.3 252 272-564 2-282 (282)
32 cd08607 GDPD_GDE5 Glycerophosp 100.0 5.5E-42 1.2E-46 360.7 24.3 263 271-564 1-290 (290)
33 cd08570 GDPD_YPL206cp_fungi Gl 100.0 4.3E-42 9.4E-47 350.3 22.5 229 272-564 1-234 (234)
34 cd08561 GDPD_cytoplasmic_ScUgp 100.0 1.2E-41 2.5E-46 350.4 24.2 242 272-570 1-248 (249)
35 cd08566 GDPD_AtGDE_like Glycer 100.0 2E-41 4.3E-46 346.3 23.8 236 271-564 1-240 (240)
36 cd08585 GDPD_like_3 Glyceropho 100.0 1.2E-39 2.6E-44 332.1 22.6 225 269-561 3-236 (237)
37 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 1.9E-39 4.2E-44 331.5 23.0 231 272-565 1-236 (237)
38 COG0584 UgpQ Glycerophosphoryl 100.0 3.2E-38 7E-43 326.4 22.9 246 269-572 5-255 (257)
39 cd08613 GDPD_GDE4_like_1 Glyce 100.0 1.3E-37 2.9E-42 322.2 23.3 240 268-567 22-307 (309)
40 PF03009 GDPD: Glycerophosphor 100.0 1.3E-37 2.9E-42 319.2 21.5 242 275-566 1-256 (256)
41 cd08571 GDPD_SHV3_plant Glycer 100.0 3E-37 6.4E-42 324.8 20.4 248 3-265 23-301 (302)
42 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 3.5E-36 7.7E-41 317.6 22.8 250 4-260 24-309 (309)
43 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 6.2E-35 1.3E-39 307.1 20.3 244 4-265 24-299 (300)
44 cd08556 GDPD Glycerophosphodie 100.0 9.9E-34 2.2E-38 278.4 21.4 188 272-563 1-189 (189)
45 KOG2258 Glycerophosphoryl dies 100.0 3.5E-35 7.6E-40 312.5 5.6 329 209-580 2-338 (341)
46 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 7.7E-33 1.7E-37 295.2 19.6 255 1-265 37-352 (356)
47 cd08600 GDPD_EcGlpQ_like Glyce 100.0 1.5E-32 3.2E-37 291.2 20.2 245 3-261 23-318 (318)
48 PRK11143 glpQ glycerophosphodi 100.0 1.3E-31 2.9E-36 286.8 19.9 250 4-267 50-351 (355)
49 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 1.5E-31 3.3E-36 261.4 17.6 169 272-563 1-179 (179)
50 cd08559 GDPD_periplasmic_GlpQ_ 100.0 8.2E-31 1.8E-35 276.1 19.0 239 3-260 23-296 (296)
51 cd08580 GDPD_Rv2277c_like Glyc 100.0 1.5E-29 3.2E-34 260.6 10.1 213 4-262 24-262 (263)
52 cd08581 GDPD_like_1 Glyceropho 100.0 6.6E-28 1.4E-32 244.8 15.8 190 4-260 22-229 (229)
53 cd08610 GDPD_GDE6 Glycerophosp 100.0 2.8E-28 6E-33 256.8 13.1 205 3-265 45-280 (316)
54 cd08562 GDPD_EcUgpQ_like Glyce 100.0 1.1E-27 2.4E-32 243.4 16.4 192 5-260 23-229 (229)
55 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 9.6E-28 2.1E-32 247.1 15.2 196 3-258 24-251 (252)
56 PRK09454 ugpQ cytoplasmic glyc 100.0 1.3E-27 2.7E-32 246.0 16.0 197 4-265 31-244 (249)
57 cd08601 GDPD_SaGlpQ_like Glyce 99.9 9.6E-28 2.1E-32 248.1 14.8 207 4-266 24-254 (256)
58 cd08612 GDPD_GDE4 Glycerophosp 99.9 1.1E-27 2.5E-32 252.7 13.5 223 3-266 49-297 (300)
59 cd08568 GDPD_TmGDE_like Glycer 99.9 3E-27 6.6E-32 239.8 14.0 194 4-262 23-225 (226)
60 cd08573 GDPD_GDE1 Glycerophosp 99.9 2.9E-27 6.3E-32 244.3 14.0 204 4-259 22-257 (258)
61 cd08582 GDPD_like_2 Glyceropho 99.9 6.9E-27 1.5E-31 238.3 16.2 196 4-261 22-232 (233)
62 cd08578 GDPD_NUC-2_fungi Putat 99.9 3.6E-26 7.9E-31 238.3 20.5 236 286-563 17-296 (300)
63 cd08565 GDPD_pAtGDE_like Glyce 99.9 6.2E-27 1.3E-31 238.6 14.4 196 4-263 22-234 (235)
64 cd08563 GDPD_TtGDE_like Glycer 99.9 1.3E-26 2.8E-31 235.8 16.3 192 4-260 24-230 (230)
65 cd08579 GDPD_memb_like Glycero 99.9 1.2E-26 2.5E-31 234.6 14.1 185 4-260 22-220 (220)
66 cd08609 GDPD_GDE3 Glycerophosp 99.9 1.2E-26 2.6E-31 244.6 13.0 202 3-267 49-282 (315)
67 cd08575 GDPD_GDE4_like Glycero 99.9 1.1E-26 2.3E-31 241.1 12.3 216 4-262 24-263 (264)
68 cd08608 GDPD_GDE2 Glycerophosp 99.9 1.6E-26 3.5E-31 246.0 13.9 203 2-265 23-258 (351)
69 cd08605 GDPD_GDE5_like_1_plant 99.9 9.5E-27 2.1E-31 244.0 11.5 211 3-260 33-282 (282)
70 cd08607 GDPD_GDE5 Glycerophosp 99.9 4.9E-26 1.1E-30 239.6 14.9 220 3-260 29-290 (290)
71 cd08564 GDPD_GsGDE_like Glycer 99.9 3.7E-26 7.9E-31 237.4 13.6 206 4-266 29-263 (265)
72 cd08572 GDPD_GDE5_like Glycero 99.9 6.8E-26 1.5E-30 238.1 15.0 220 3-260 30-293 (293)
73 cd08570 GDPD_YPL206cp_fungi Gl 99.9 7.3E-26 1.6E-30 230.9 14.7 192 4-260 22-234 (234)
74 cd08566 GDPD_AtGDE_like Glycer 99.9 8.8E-26 1.9E-30 231.0 14.0 206 4-260 24-240 (240)
75 cd08561 GDPD_cytoplasmic_ScUgp 99.9 1E-25 2.3E-30 231.9 14.2 212 4-265 22-247 (249)
76 cd08606 GDPD_YPL110cp_fungi Gl 99.9 1.6E-25 3.6E-30 235.1 13.9 215 2-267 31-284 (286)
77 cd08567 GDPD_SpGDE_like Glycer 99.9 3.9E-25 8.5E-30 229.4 15.5 205 3-261 23-262 (263)
78 cd08585 GDPD_like_3 Glyceropho 99.9 6.7E-25 1.4E-29 223.8 14.2 188 7-256 33-235 (237)
79 cd08583 PI-PLCc_GDPD_SF_unchar 99.9 1.9E-23 4.2E-28 213.5 14.4 193 4-261 24-236 (237)
80 PF03009 GDPD: Glycerophosphor 99.9 3.3E-24 7.2E-29 219.8 8.0 209 4-262 19-256 (256)
81 cd08613 GDPD_GDE4_like_1 Glyce 99.9 2.3E-23 4.9E-28 216.4 11.8 207 5-263 70-307 (309)
82 COG0584 UgpQ Glycerophosphoryl 99.9 9.8E-22 2.1E-26 203.3 13.8 206 5-266 30-253 (257)
83 cd08584 PI-PLCc_GDPD_SF_unchar 99.9 1.9E-20 4.2E-25 181.1 17.6 186 272-566 1-191 (192)
84 cd08556 GDPD Glycerophosphodie 99.7 9.3E-18 2E-22 164.8 12.3 156 4-259 22-189 (189)
85 cd08578 GDPD_NUC-2_fungi Putat 99.7 1.6E-16 3.5E-21 166.1 14.9 208 3-259 23-296 (300)
86 cd08555 PI-PLCc_GDPD_SF Cataly 99.7 4.2E-16 9.1E-21 152.5 10.9 133 5-259 23-179 (179)
87 KOG2258 Glycerophosphoryl dies 99.4 1.1E-13 2.3E-18 148.0 5.0 224 4-266 92-328 (341)
88 cd08577 PI-PLCc_GDPD_SF_unchar 99.4 2.5E-12 5.5E-17 129.9 12.1 212 273-563 4-228 (228)
89 cd08576 GDPD_like_SMaseD_PLD G 99.3 9.6E-11 2.1E-15 119.4 16.8 223 272-576 2-251 (265)
90 cd08584 PI-PLCc_GDPD_SF_unchar 98.8 2.7E-08 5.8E-13 96.9 10.5 166 10-262 19-191 (192)
91 cd08577 PI-PLCc_GDPD_SF_unchar 98.4 5E-07 1.1E-11 91.5 7.3 48 5-75 19-66 (228)
92 PF13653 GDPD_2: Glycerophosph 98.3 7.6E-07 1.6E-11 59.7 3.0 30 522-565 1-30 (30)
93 cd08576 GDPD_like_SMaseD_PLD G 98.1 8.5E-06 1.8E-10 83.5 8.6 49 204-267 193-246 (265)
94 cd08592 PI-PLCc_gamma Catalyti 98.1 2.9E-06 6.3E-11 84.9 5.0 49 273-321 15-66 (229)
95 cd08627 PI-PLCc_gamma1 Catalyt 98.0 8.4E-06 1.8E-10 81.3 5.0 48 274-321 16-66 (229)
96 PF13653 GDPD_2: Glycerophosph 97.6 1.7E-05 3.7E-10 53.3 0.9 30 217-261 1-30 (30)
97 KOG2421 Predicted starch-bindi 97.6 9.8E-06 2.1E-10 89.1 -1.6 58 269-326 324-388 (417)
98 cd08597 PI-PLCc_PRIP_metazoa C 97.4 0.00016 3.4E-09 74.1 4.4 41 281-321 26-66 (260)
99 smart00148 PLCXc Phospholipase 97.0 0.00092 2E-08 62.3 4.9 43 279-321 23-65 (135)
100 cd08631 PI-PLCc_delta4 Catalyt 96.4 0.015 3.2E-07 59.6 8.7 40 282-321 27-66 (258)
101 cd08595 PI-PLCc_zeta Catalytic 96.3 0.015 3.1E-07 59.6 8.5 41 281-321 26-66 (257)
102 cd08630 PI-PLCc_delta3 Catalyt 96.3 0.014 3.1E-07 59.7 8.3 41 281-321 26-66 (258)
103 cd08632 PI-PLCc_eta1 Catalytic 96.3 0.02 4.3E-07 58.3 9.1 40 282-321 27-66 (253)
104 cd08593 PI-PLCc_delta Catalyti 96.1 0.022 4.7E-07 58.5 8.6 41 281-321 26-66 (257)
105 cd08626 PI-PLCc_beta4 Catalyti 96.1 0.022 4.8E-07 58.3 8.4 41 281-321 26-68 (257)
106 PF10223 DUF2181: Uncharacteri 95.9 0.85 1.8E-05 46.7 18.8 201 284-568 11-242 (244)
107 cd08594 PI-PLCc_eta Catalytic 95.6 0.016 3.4E-07 58.2 4.7 41 281-321 26-66 (227)
108 cd08633 PI-PLCc_eta2 Catalytic 95.4 0.019 4.2E-07 58.5 4.7 42 280-321 25-66 (254)
109 cd08558 PI-PLCc_eukaryota Cata 95.2 0.026 5.7E-07 56.7 5.0 41 281-321 26-66 (226)
110 cd08599 PI-PLCc_plant Catalyti 95.2 0.022 4.9E-07 57.4 4.5 40 282-321 27-66 (228)
111 cd08596 PI-PLCc_epsilon Cataly 95.1 0.027 5.8E-07 57.6 4.8 41 281-321 26-66 (254)
112 cd08628 PI-PLCc_gamma2 Catalyt 95.1 0.025 5.4E-07 57.9 4.4 40 282-321 27-66 (254)
113 cd08629 PI-PLCc_delta1 Catalyt 95.0 0.025 5.3E-07 57.9 4.1 41 281-321 26-66 (258)
114 cd08598 PI-PLC1c_yeast Catalyt 94.8 0.037 8E-07 55.9 4.8 41 281-321 26-66 (231)
115 cd08623 PI-PLCc_beta1 Catalyti 94.4 0.04 8.7E-07 56.5 3.9 40 282-321 27-68 (258)
116 cd08624 PI-PLCc_beta2 Catalyti 94.2 0.051 1.1E-06 55.8 4.3 41 281-321 26-68 (261)
117 cd08591 PI-PLCc_beta Catalytic 94.0 0.053 1.1E-06 55.6 4.0 41 281-321 26-68 (257)
118 cd08625 PI-PLCc_beta3 Catalyti 93.4 0.09 1.9E-06 54.1 4.3 41 281-321 26-68 (258)
119 KOG1264 Phospholipase C [Lipid 91.7 0.13 2.9E-06 59.1 3.3 41 281-321 333-373 (1267)
120 KOG0169 Phosphoinositide-speci 91.6 0.55 1.2E-05 54.4 8.0 50 272-321 301-353 (746)
121 KOG1924 RhoA GTPase effector D 91.2 0.42 9.1E-06 55.1 6.5 42 602-643 540-587 (1102)
122 PLN02230 phosphoinositide phos 89.3 0.38 8.3E-06 55.2 4.3 42 281-322 139-180 (598)
123 PF04309 G3P_antiterm: Glycero 87.4 3.4 7.3E-05 40.2 8.8 143 384-566 27-173 (175)
124 COG1830 FbaB DhnA-type fructos 86.3 11 0.00024 38.9 12.2 160 132-301 64-234 (265)
125 PLN02228 Phosphoinositide phos 86.3 0.77 1.7E-05 52.5 4.3 42 281-322 130-172 (567)
126 PLN02952 phosphoinositide phos 84.7 1.1 2.3E-05 51.8 4.5 43 280-322 146-189 (599)
127 KOG2421 Predicted starch-bindi 84.0 0.25 5.4E-06 54.7 -0.9 32 7-38 358-389 (417)
128 cd08592 PI-PLCc_gamma Catalyti 83.9 0.79 1.7E-05 46.3 2.7 26 8-33 42-67 (229)
129 cd08589 PI-PLCc_SaPLC1_like Ca 83.7 6.1 0.00013 42.2 9.3 29 284-312 44-72 (324)
130 cd00137 PI-PLCc Catalytic doma 82.1 1.9 4.2E-05 45.1 4.9 40 282-321 32-71 (274)
131 PLN02223 phosphoinositide phos 81.7 1.3 2.8E-05 50.2 3.6 38 284-321 134-171 (537)
132 cd08627 PI-PLCc_gamma1 Catalyt 81.0 1.2 2.6E-05 45.0 2.7 26 8-33 42-67 (229)
133 PLN02222 phosphoinositide phos 80.6 1.8 3.8E-05 49.9 4.2 42 281-322 127-169 (581)
134 PF00388 PI-PLC-X: Phosphatidy 79.0 2.8 6E-05 39.3 4.4 40 282-321 24-63 (146)
135 PF04309 G3P_antiterm: Glycero 79.0 5.9 0.00013 38.5 6.7 59 509-575 33-92 (175)
136 CHL00200 trpA tryptophan synth 78.5 43 0.00094 34.8 13.4 26 283-308 28-53 (263)
137 cd08597 PI-PLCc_PRIP_metazoa C 75.8 2 4.3E-05 44.4 2.6 26 7-32 41-66 (260)
138 cd04724 Tryptophan_synthase_al 75.0 1E+02 0.0022 31.5 16.7 22 284-305 14-35 (242)
139 PF10566 Glyco_hydro_97: Glyco 74.7 13 0.00028 38.8 8.3 88 477-566 30-130 (273)
140 COG2200 Rtn c-di-GMP phosphodi 72.1 63 0.0014 33.3 12.7 112 404-563 121-235 (256)
141 PRK13111 trpA tryptophan synth 70.2 1.1E+02 0.0024 31.8 13.9 154 269-463 11-168 (258)
142 PLN02591 tryptophan synthase 69.4 1.4E+02 0.0031 30.7 15.2 198 283-562 15-218 (250)
143 PRK08227 autoinducer 2 aldolas 69.0 14 0.0003 38.5 6.9 158 132-303 62-225 (264)
144 COG1954 GlpP Glycerol-3-phosph 64.9 1.4E+02 0.003 29.0 12.8 142 384-565 31-176 (181)
145 KOG1924 RhoA GTPase effector D 63.9 15 0.00032 43.1 6.3 17 241-258 216-232 (1102)
146 cd00958 DhnA Class I fructose- 61.7 38 0.00082 34.3 8.5 93 205-302 112-212 (235)
147 PRK11059 regulatory protein Cs 58.8 68 0.0015 37.8 11.1 40 510-563 593-632 (640)
148 COG4943 Predicted signal trans 58.0 35 0.00076 38.2 7.7 133 395-558 346-495 (524)
149 PF02638 DUF187: Glycosyl hydr 56.0 8.1 0.00017 41.3 2.5 18 205-222 73-90 (311)
150 PRK13397 3-deoxy-7-phosphohept 55.6 2.5E+02 0.0054 29.0 13.1 114 174-310 92-225 (250)
151 PF03060 NMO: Nitronate monoox 53.8 35 0.00076 36.7 7.0 78 203-306 124-221 (330)
152 cd04728 ThiG Thiazole synthase 51.3 23 0.00051 36.2 4.8 44 198-256 102-149 (248)
153 COG1954 GlpP Glycerol-3-phosph 48.3 1.2E+02 0.0026 29.4 8.7 52 509-573 37-94 (181)
154 COG0113 HemB Delta-aminolevuli 47.8 1.6E+02 0.0034 31.3 10.1 137 422-573 175-329 (330)
155 PF10566 Glyco_hydro_97: Glyco 47.7 18 0.00038 37.9 3.4 96 205-334 76-171 (273)
156 PRK00208 thiG thiazole synthas 46.7 32 0.00069 35.3 4.9 83 197-301 101-201 (250)
157 TIGR01182 eda Entner-Doudoroff 46.7 2.3E+02 0.005 28.3 11.0 106 423-566 21-131 (204)
158 smart00148 PLCXc Phospholipase 46.1 17 0.00037 33.7 2.7 27 7-33 40-66 (135)
159 COG2200 Rtn c-di-GMP phosphodi 45.9 13 0.00027 38.5 2.0 70 173-257 163-233 (256)
160 PRK13396 3-deoxy-7-phosphohept 43.8 2.6E+02 0.0057 30.4 11.6 117 173-311 177-313 (352)
161 PRK06852 aldolase; Validated 43.6 60 0.0013 34.5 6.6 91 205-302 157-263 (304)
162 COG3315 O-Methyltransferase in 42.5 3.8E+02 0.0082 28.4 12.5 140 405-570 117-272 (297)
163 PRK06552 keto-hydroxyglutarate 39.6 3.9E+02 0.0085 26.8 11.5 129 392-564 5-137 (213)
164 COG4747 ACT domain-containing 39.3 52 0.0011 29.7 4.4 68 511-598 19-87 (142)
165 cd00945 Aldolase_Class_I Class 39.3 46 0.00099 32.1 4.8 63 239-304 17-85 (201)
166 KOG1265 Phospholipase C [Lipid 37.8 31 0.00067 41.2 3.6 77 245-321 283-380 (1189)
167 TIGR01769 GGGP geranylgeranylg 37.7 2.6E+02 0.0057 27.9 9.8 72 476-561 131-204 (205)
168 PRK10060 RNase II stability mo 37.2 3E+02 0.0065 32.5 12.0 40 510-563 601-640 (663)
169 PRK10551 phage resistance prot 37.1 2.9E+02 0.0062 31.8 11.4 39 510-562 457-495 (518)
170 cd00381 IMPDH IMPDH: The catal 36.7 1.4E+02 0.0031 32.0 8.3 78 205-303 123-225 (325)
171 PRK13561 putative diguanylate 36.3 2.1E+02 0.0045 33.6 10.5 47 510-570 594-643 (651)
172 TIGR03151 enACPred_II putative 36.2 1.1E+02 0.0024 32.5 7.4 78 205-305 99-191 (307)
173 TIGR03569 NeuB_NnaB N-acetylne 35.4 6E+02 0.013 27.4 14.2 16 288-303 207-222 (329)
174 PRK05718 keto-hydroxyglutarate 32.7 5.2E+02 0.011 25.9 12.6 137 390-573 5-148 (212)
175 COG0269 SgbH 3-hexulose-6-phos 32.7 5.3E+02 0.012 26.0 11.8 48 510-568 96-143 (217)
176 PRK12858 tagatose 1,6-diphosph 32.7 1.9E+02 0.0041 31.3 8.5 93 205-303 146-275 (340)
177 PRK12595 bifunctional 3-deoxy- 32.2 5.3E+02 0.012 28.1 11.9 94 205-307 215-325 (360)
178 PRK11572 copper homeostasis pr 31.7 1.4E+02 0.003 30.8 6.8 117 120-258 20-148 (248)
179 PRK09250 fructose-bisphosphate 31.6 1.4E+02 0.003 32.3 7.1 178 111-301 94-315 (348)
180 PF03932 CutC: CutC family; I 30.9 1.2E+02 0.0027 30.1 6.2 108 129-257 36-146 (201)
181 PF00289 CPSase_L_chain: Carba 30.5 2.9E+02 0.0063 24.6 8.0 90 423-523 13-102 (110)
182 COG1649 Uncharacterized protei 30.1 32 0.0007 38.1 2.1 18 205-222 118-135 (418)
183 PRK11829 biofilm formation reg 30.0 3.8E+02 0.0083 31.4 11.3 48 511-572 600-650 (660)
184 PRK09283 delta-aminolevulinic 29.8 3.7E+02 0.008 28.8 9.7 135 422-571 170-322 (323)
185 PRK11840 bifunctional sulfur c 29.3 1.1E+02 0.0024 32.7 5.8 38 199-248 177-218 (326)
186 TIGR00640 acid_CoA_mut_C methy 29.0 1.4E+02 0.0031 27.5 5.9 39 510-562 71-112 (132)
187 PLN02623 pyruvate kinase 28.3 3.4E+02 0.0074 31.6 9.9 62 508-580 364-442 (581)
188 COG1242 Predicted Fe-S oxidore 28.0 6.8E+02 0.015 26.4 10.9 45 510-559 171-215 (312)
189 PF00290 Trp_syntA: Tryptophan 27.7 7.1E+02 0.015 25.9 13.0 38 269-308 9-48 (259)
190 PF01116 F_bP_aldolase: Fructo 27.5 7.1E+02 0.015 26.2 11.5 148 389-560 4-173 (287)
191 cd02812 PcrB_like PcrB_like pr 27.4 4.1E+02 0.0088 26.9 9.2 60 487-563 143-205 (219)
192 PF06679 DUF1180: Protein of u 27.3 1.3E+02 0.0027 29.0 5.3 8 618-625 45-52 (163)
193 PRK06015 keto-hydroxyglutarate 27.2 3.6E+02 0.0078 26.9 8.8 114 423-573 17-137 (201)
194 COG1830 FbaB DhnA-type fructos 26.7 1.4E+02 0.003 31.0 5.8 63 510-572 133-196 (265)
195 PRK11070 ssDNA exonuclease Rec 26.4 4.1E+02 0.0089 31.0 10.3 65 487-563 92-159 (575)
196 cd00384 ALAD_PBGS Porphobilino 26.3 3.8E+02 0.0083 28.5 9.0 134 422-570 162-313 (314)
197 TIGR03586 PseI pseudaminic aci 26.3 8.4E+02 0.018 26.2 14.0 16 288-303 206-221 (327)
198 PF09370 TIM-br_sig_trns: TIM- 26.1 70 0.0015 33.2 3.6 39 511-564 141-179 (268)
199 PRK07998 gatY putative fructos 25.9 2.2E+02 0.0047 30.0 7.2 114 177-304 94-229 (283)
200 cd08588 PI-PLCc_At5g67130_like 25.8 71 0.0015 33.3 3.7 49 270-319 16-69 (270)
201 PRK07226 fructose-bisphosphate 25.7 3.5E+02 0.0077 28.0 8.9 93 205-301 129-228 (267)
202 PRK14040 oxaloacetate decarbox 25.5 8E+02 0.017 28.8 12.5 114 450-571 63-190 (593)
203 PRK15452 putative protease; Pr 25.5 1.4E+02 0.003 33.6 6.1 57 511-572 50-106 (443)
204 PRK13111 trpA tryptophan synth 25.4 7E+02 0.015 25.8 10.9 161 387-573 22-194 (258)
205 PRK05835 fructose-bisphosphate 25.4 8.5E+02 0.018 26.0 14.2 148 387-559 2-172 (307)
206 PF03060 NMO: Nitronate monoox 25.2 95 0.0021 33.4 4.6 38 510-562 126-163 (330)
207 COG0826 Collagenase and relate 25.0 1.9E+02 0.0041 31.4 6.8 57 510-571 52-108 (347)
208 PRK07998 gatY putative fructos 25.0 8.3E+02 0.018 25.7 13.4 150 387-561 3-172 (283)
209 PF13167 GTP-bdg_N: GTP-bindin 24.9 3.3E+02 0.0071 23.7 7.0 60 511-570 12-72 (95)
210 PF00563 EAL: EAL domain; Int 24.9 99 0.0021 30.5 4.5 40 510-563 193-232 (236)
211 TIGR01768 GGGP-family geranylg 24.5 4.6E+02 0.01 26.6 9.1 42 508-563 165-209 (223)
212 PF06673 L_lactis_ph-MCP: Lact 24.0 53 0.0012 32.2 2.1 46 276-321 255-301 (347)
213 PF15050 SCIMP: SCIMP protein 23.8 85 0.0018 28.4 3.1 12 614-625 64-75 (133)
214 cd02071 MM_CoA_mut_B12_BD meth 23.7 2.3E+02 0.0051 25.4 6.3 51 510-572 68-121 (122)
215 TIGR00262 trpA tryptophan synt 23.7 8.2E+02 0.018 25.2 17.0 40 269-308 9-48 (256)
216 PRK11359 cyclic-di-GMP phospho 23.7 6.2E+02 0.013 30.2 11.8 40 510-563 738-777 (799)
217 cd00452 KDPG_aldolase KDPG and 23.5 4E+02 0.0087 25.9 8.4 39 509-562 86-124 (190)
218 PF10210 MRP-S32: Mitochondria 23.4 55 0.0012 28.5 1.9 17 303-319 4-21 (96)
219 PRK13399 fructose-1,6-bisphosp 23.2 5.2E+02 0.011 28.1 9.6 116 387-526 3-142 (347)
220 cd08590 PI-PLCc_Rv2075c_like C 23.2 79 0.0017 33.0 3.4 35 284-319 41-75 (267)
221 cd04823 ALAD_PBGS_aspartate_ri 23.2 5.9E+02 0.013 27.2 9.7 135 422-571 167-319 (320)
222 TIGR03820 lys_2_3_AblA lysine- 23.1 5.2E+02 0.011 28.8 9.9 18 511-528 236-253 (417)
223 PRK12738 kbaY tagatose-bisphos 23.1 9E+02 0.02 25.5 14.0 115 387-525 3-133 (286)
224 COG2185 Sbm Methylmalonyl-CoA 23.0 2E+02 0.0043 27.1 5.6 44 505-562 76-122 (143)
225 cd04743 NPD_PKS 2-Nitropropane 22.9 1.2E+02 0.0025 32.6 4.6 38 510-562 93-130 (320)
226 PF11814 DUF3335: Peptidase_C3 22.9 2.9E+02 0.0063 27.7 7.0 102 205-326 57-172 (207)
227 PF09370 TIM-br_sig_trns: TIM- 22.8 1.3E+02 0.0029 31.2 4.8 44 206-265 141-184 (268)
228 COG0134 TrpC Indole-3-glycerol 22.7 3.9E+02 0.0084 27.7 8.2 145 388-562 33-183 (254)
229 PF12957 DUF3846: Domain of un 22.5 1.3E+02 0.0029 25.8 4.2 35 281-320 14-48 (95)
230 cd04728 ThiG Thiazole synthase 22.2 3.1E+02 0.0067 28.3 7.3 38 510-561 110-150 (248)
231 TIGR01949 AroFGH_arch predicte 22.1 4.2E+02 0.0091 27.2 8.6 121 166-304 34-176 (258)
232 PF02679 ComA: (2R)-phospho-3- 21.8 8.9E+02 0.019 24.9 11.0 141 385-564 22-169 (244)
233 PRK07114 keto-hydroxyglutarate 21.8 8.4E+02 0.018 24.7 12.5 132 391-564 6-140 (222)
234 cd02067 B12-binding B12 bindin 21.8 3.1E+02 0.0067 24.2 6.7 47 510-568 68-115 (119)
235 cd04824 eu_ALAD_PBGS_cysteine_ 21.8 5E+02 0.011 27.8 8.8 135 422-570 166-319 (320)
236 CHL00200 trpA tryptophan synth 21.3 8.8E+02 0.019 25.1 10.7 160 387-573 25-196 (263)
237 PF11330 DUF3132: Protein of u 21.3 78 0.0017 26.9 2.3 34 14-70 79-112 (124)
238 cd08557 PI-PLCc_bacteria_like 21.3 98 0.0021 31.7 3.7 37 284-320 37-74 (271)
239 PRK08195 4-hyroxy-2-oxovalerat 21.2 9.9E+02 0.021 25.7 11.5 56 509-572 117-180 (337)
240 TIGR01949 AroFGH_arch predicte 20.8 4.8E+02 0.01 26.8 8.7 91 205-301 126-224 (258)
241 PF03740 PdxJ: Pyridoxal phosp 20.8 2.5E+02 0.0054 28.8 6.3 39 510-562 114-152 (239)
242 PRK01033 imidazole glycerol ph 20.7 9.2E+02 0.02 24.7 12.9 44 509-565 184-229 (258)
243 KOG0066 eIF2-interacting prote 20.3 61 0.0013 36.0 1.9 33 19-69 750-782 (807)
244 PLN02331 phosphoribosylglycina 20.1 6.1E+02 0.013 25.3 8.9 51 511-567 40-91 (207)
No 1
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=8.9e-55 Score=449.48 Aligned_cols=278 Identities=27% Similarity=0.463 Sum_probs=242.5
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCC--CeEEeceeEccCCeEEEecCCCcccccCcccccccccccc-cccccccc
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGA--DIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSV-PEIQKERG 346 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~Ga--D~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~-~~~~~~~G 346 (671)
|+||||||+||.+||||++||+.|+++|| |+||||||+||||++||+||.+|+|+|++...|++|.+++ .+++..+|
T Consensus 1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~t~~idG~~~~g 80 (299)
T cd08603 1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKKTYSVNGVSTKG 80 (299)
T ss_pred CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccccccccccccCC
Confidence 68999999999999999999999999999 4799999999999999999999999999877899998764 59999999
Q ss_pred cccccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHH
Q 005894 347 IFSFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDA 426 (671)
Q Consensus 347 ~~i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~ 426 (671)
+++.|+||+||++|++.... ..|++.+.+.++||||+|+|++++.. ++++|||.+.++. ..|+++++.
T Consensus 81 ~~~~d~TlaELk~L~~~~~~--------~~r~~~~~g~~~IpTLeEvl~~~~~~---gi~i~ie~~~~~~-~~gl~~~~~ 148 (299)
T cd08603 81 WFSVDFTLAELQQVTLIQGI--------FSRTPIFDGQYPISTVEDVVTLAKPE---GLWLNVQHDAFYQ-QHNLSMSSY 148 (299)
T ss_pred ceeccCCHHHHhhCCCCCCc--------ccCCcccCCcCCCCCHHHHHHHhHhc---CeEEEEecHHHHH-HcCCCHHHH
Confidence 89999999999999986322 23667776666999999999999874 8999999999887 589999999
Q ss_pred HHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC---CCceEEE-Eeecc-cC--------CCChhHHHHHHHHHHHhcC
Q 005894 427 VTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV---PAYKKVL-HIRKE-VS--------AAPREVVEEIKKYASAVTV 493 (671)
Q Consensus 427 v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~---p~~~~~~-l~~~~-~~--------d~~~~~l~~i~~~a~~v~~ 493 (671)
|+++|++++ .++||||+...|+++++. +++++++ +.+.. .. ++. .++++|++||++|++
T Consensus 149 l~~~L~~~~-------~v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~-~~L~eIa~yAdgig~ 220 (299)
T cd08603 149 LLSLSKTVK-------VDYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSIL-KNLTFIKTFASGILV 220 (299)
T ss_pred HHHHHHHcC-------cEEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHH-HhHHHHHHHHhhcCC
Confidence 999999875 489999999999999875 5778886 44331 11 111 158899999999999
Q ss_pred CceeeecCC-CcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcC---ccEEEECChhhHHH
Q 005894 494 TRTSVISTT-ESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVG---VDGITTEFPATASK 569 (671)
Q Consensus 494 ~~~~v~~~~-~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~G---VDgIiTD~P~~~~~ 569 (671)
++.+++|.. .+++...+.+|+++|++||.||+||++++.. ++++|+.||..|+..++ +.| ||||+||||+++.+
T Consensus 221 ~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~~-~~~~~~~d~~~e~~~~~-~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 221 PKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFD-ISYNYSYDPVAEYLSFV-GNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred ChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeCCCC-ccccccCCHHHHHHHHH-hcCCCCCCEEEecCchhhcc
Confidence 999999875 4567777899999999999999999999987 99999999999999996 767 99999999998764
No 2
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=7.4e-53 Score=443.03 Aligned_cols=296 Identities=47% Similarity=0.761 Sum_probs=244.9
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccc-ccccccccccc
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATS-VPEIQKERGIF 348 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~-~~~~~~~~G~~ 348 (671)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||....|++|.++ +.+++++.|++
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~g~~ 80 (302)
T cd08571 1 PLVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTYVVEGQSTSGIF 80 (302)
T ss_pred CeEEeCCCcCCCCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCcccccccccccceecccCcccCCee
Confidence 68999999999999999999999999999999999999999999999999999999988888887654 56778889977
Q ss_pred cccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHH
Q 005894 349 SFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVT 428 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~ 428 (671)
+.++||+||++|+++...+|+. .+|++.+.++++||||+|+|++++....++++||||.+....+..+..+++.++
T Consensus 81 v~d~T~aeL~~l~~~~~~~~~~----~~~~~~~~~~~~IptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~ 156 (302)
T cd08571 81 SFDLTWAEIQTLKPIISNPFSV----LFRNPRNDNAGKILTLEDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVL 156 (302)
T ss_pred eeeCCHHHHhhCcccccCcccc----cCCCcccCCCCCcCCHHHHHHhhhccCCceEEEEccCchhhhhhccccHHHHHH
Confidence 9999999999999976555532 346666666789999999999998753347999999875433222346889999
Q ss_pred HHHHhcCCCCCCCceEEEEcCChHHHHHHhcC---CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCC-Cc
Q 005894 429 KALSNATFDKQSTQQVMIQSDDSSVLSKFQDV---PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTT-ES 504 (671)
Q Consensus 429 ~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~---p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~-~~ 504 (671)
++++++++... .++|+|+||++++|++++++ |.++++++++....+.....+.++..+|.+++++...+.+.. ..
T Consensus 157 ~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~~~~~~~l~~~~~~a~~v~~~~~~~~~~~~~~ 235 (302)
T cd08571 157 TSLSKAGYDQT-AKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDS 235 (302)
T ss_pred HHHHHcCCCCC-CCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcCCCChhHHHHHHHhcCccccChhHeeecCCCC
Confidence 99999998521 15999999999999999987 778888887543222224557778888988888777676532 12
Q ss_pred ccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhc-CccEEEECChhhHHHH
Q 005894 505 FTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGV-GVDGITTEFPATASKY 570 (671)
Q Consensus 505 ~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~-GVDgIiTD~P~~~~~~ 570 (671)
+....+.+|+++|++|+.|++||+|++...++|+|+.|+..++.+++..+ ||||||||+|+++.+|
T Consensus 236 ~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~gVDGiiTD~P~~~~~~ 302 (302)
T cd08571 236 FLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNSVDGVITDFPATAARA 302 (302)
T ss_pred cccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCCCCEEEecCchhhhcC
Confidence 34445689999999999999999999998899999999999999997555 9999999999998764
No 3
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=1.4e-52 Score=440.83 Aligned_cols=298 Identities=57% Similarity=0.937 Sum_probs=244.2
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcc-cccccccccccccccccccc
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAA-TVFMSKATSVPEIQKERGIF 348 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~-~~f~~r~~~~~~~~~~~G~~ 348 (671)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||.. ..|++|+++++++.+.+|++
T Consensus 1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T cd08604 1 PLIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTVPEIGSTSGIF 80 (300)
T ss_pred CeEEecCCcCCCCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccccccccccCcee
Confidence 68999999999999999999999999999999999999999999999999999999954 48899888877777778878
Q ss_pred cccCCHHHHhccCCCcC-CCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHH
Q 005894 349 SFDLTWTEIQSLKPQIS-SPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAV 427 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~-~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v 427 (671)
+.++||+||++|+++.. .||.. +..|.+.+.++++||||+|+|+++++.+.++++||||.+....+..+..+++++
T Consensus 81 v~d~t~~eL~~l~~~~~~~~~~~---~~~~~~~~~~~~~iptL~Evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v 157 (300)
T cd08604 81 TFDLTWSEIQTLKPAISNPYSVT---GLFRNPANKNAGKFLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDAV 157 (300)
T ss_pred eecCcHHHHhhCccCCcCccccc---CcCCCcccCCCCCCCCHHHHHHHHHhcCCceEEEEeeccchhhhccCccHHHHH
Confidence 99999999999998742 33331 145667776668999999999999876434799999976543222345789999
Q ss_pred HHHHHhcCCCCCCCceEEEEcCChHHHHHHhcCCCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccc
Q 005894 428 TKALSNATFDKQSTQQVMIQSDDSSVLSKFQDVPAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTT 507 (671)
Q Consensus 428 ~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~ 507 (671)
+++++++++.....++|+|+||++++|+++++..+++++++++....+.....++++..+|++++++...+.+....++.
T Consensus 158 ~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~ 237 (300)
T cd08604 158 LDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLT 237 (300)
T ss_pred HHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhccCCceEEEecCcccccChhHHHHHHHhccEEEeChhhcccccCCccc
Confidence 99999999863221489999999999999999877889998865434433444566667787788776666554333444
Q ss_pred cchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHH
Q 005894 508 NATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKY 570 (671)
Q Consensus 508 ~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~ 570 (671)
..+++|+++|++|+.|++||+|++...++++|+.||..++.+++.++||||||||+|+++.+|
T Consensus 238 ~~~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~~~~~~ 300 (300)
T cd08604 238 RQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAGVDGFITEFPATAARY 300 (300)
T ss_pred CchHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcCCCEEEecCchhhhcC
Confidence 455899999999999999999999888999999999987777666899999999999998764
No 4
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=7.3e-52 Score=427.80 Aligned_cols=255 Identities=53% Similarity=0.945 Sum_probs=234.6
Q ss_pred CCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCccCCC
Q 005894 8 SNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSEAFDN 87 (671)
Q Consensus 8 ~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~~f~~ 87 (671)
++.+||||||+||||++||+||.+|+||||+++.||+|+++|.|||+..+|||+.|||++||+++++.+.++.|++.|++
T Consensus 30 ~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~t~~idG~~~~g~~~~d~TlaELk~L~~~~~~~~r~~~~~g 109 (299)
T cd08603 30 PDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDG 109 (299)
T ss_pred CCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccccccccccccCCceeccCCHHHHhhCCCCCCcccCCcccCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999998877778889985
Q ss_pred CCCCCChhhh--------------hHHHHHhcCccHHHHHHHHHHHcCCceEEEeCCChHHHHHhhhhcCCCCcceEEEe
Q 005894 88 TQPIPTPDTI--------------YDLFYSQHNISAAKYITEYLQKLISNVYYISSPEIGFLKTMDRKVDHNTTKLVFMV 153 (671)
Q Consensus 88 ~~~IptL~ev--------------~~~~~~~~~~~~~~~v~~~l~~~~~~~~~isSf~~~~L~~i~~~~~~~~~~~v~~~ 153 (671)
.++||||+|+ ++.|+.++|++++++|+++|++++ .+||||||.+.|+++++.+...+++++|.+
T Consensus 110 ~~~IpTLeEvl~~~~~~gi~i~ie~~~~~~~~gl~~~~~l~~~L~~~~--~v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l 187 (299)
T cd08603 110 QYPISTVEDVVTLAKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVK--VDYISSPEVGFLKSIGGRVGRNGTKLVFRF 187 (299)
T ss_pred cCCCCCHHHHHHHhHhcCeEEEEecHHHHHHcCCCHHHHHHHHHHHcC--cEEEECCCHHHHHHHHHhcccCCCCeeeEe
Confidence 5699999999 567777789999999999999998 699999999999999975422258999877
Q ss_pred cCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCCCC
Q 005894 154 LEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSYSY 233 (671)
Q Consensus 154 ~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~ 233 (671)
++.+...++++++|+.++++|++|++||+||++++.+|+|.++ ++++..+|++|++||++||+||+|||+||...+++|
T Consensus 188 ~~~~~~~~~~~~~y~~~~~~L~eIa~yAdgig~~k~~i~p~~~-~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~~~~~~~ 266 (299)
T cd08603 188 LDKDDVEPSTNQTYGSILKNLTFIKTFASGILVPKSYIWPVDS-DQYLQPATSLVQDAHKAGLEVYASGFANDFDISYNY 266 (299)
T ss_pred ccCCCcCCCCCccHHHHHHhHHHHHHHHhhcCCChhheeecCC-CCcccCccHHHHHHHHcCCeEEEEEeeCCCCccccc
Confidence 7777777888999999999999999999999999999999886 788988999999999999999999999997799999
Q ss_pred CCChHHHHHHHhhcCceeeeeEeecCCCcccc
Q 005894 234 NFEPEAEYLTFIDNSQFAVDGFITDFPTTATE 265 (671)
Q Consensus 234 ~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~ 265 (671)
+.||..|++.+++.|.++|||++||||.++.+
T Consensus 267 ~~d~~~e~~~~~~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 267 SYDPVAEYLSFVGNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEecCchhhcc
Confidence 99999999999998888899999999998764
No 5
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=2.4e-49 Score=417.70 Aligned_cols=285 Identities=27% Similarity=0.433 Sum_probs=230.8
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcc--ccccccccc-ccccccccc
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAA--TVFMSKATS-VPEIQKERG 346 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~--~~f~~r~~~-~~~~~~~~G 346 (671)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+.. ..|++|++. ..++.+..|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~ 80 (309)
T cd08602 1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTG 80 (309)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCC
Confidence 68999999999999999999999999999999999999999999999999999999953 457777654 344555678
Q ss_pred cccccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccC-----cccEEEEecCchhhhhhcCC
Q 005894 347 IFSFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKA-----VSGVLININNAAYLASKKGL 421 (671)
Q Consensus 347 ~~i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~-----~~~i~IeIK~~~~~~~~~~~ 421 (671)
++|.++||+||++|+++. +|.. +++.+.+.++||||+|+|+++++.+ .++++||||.+.......+.
T Consensus 81 ~~v~d~t~~eL~~l~~~~--~~~~------~~~~~~~~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~ 152 (309)
T cd08602 81 WFTEDFTLAELKTLRARQ--RLPY------RDQSYDGQFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGL 152 (309)
T ss_pred eeeccCCHHHHhhCccCC--cCcc------cCcccCCCcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCC
Confidence 679999999999999873 3321 2334445569999999999998742 36899999976543222456
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcCCCceEEEEeecccCC---------------CChhHHHHHHH
Q 005894 422 GVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDVPAYKKVLHIRKEVSA---------------APREVVEEIKK 486 (671)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~d---------------~~~~~l~~i~~ 486 (671)
.++++|+++++++++... .++|+|+|||+++|++++++-+++++++++..... .....++++..
T Consensus 153 ~~~~~v~~~l~~~~~~~~-~~~v~i~SFd~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (309)
T cd08602 153 PMEDKLLETLKKYGYTGK-KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIAT 231 (309)
T ss_pred CHHHHHHHHHHHcCCCCC-CCCEEEECCCHHHHHHHHhhhCCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHh
Confidence 799999999999998631 14999999999999999988677899988543210 22335566667
Q ss_pred HHHHhcCCceeeecCC-CcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECCh
Q 005894 487 YASAVTVTRTSVISTT-ESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 487 ~a~~v~~~~~~v~~~~-~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P 564 (671)
+|++++++...+.+.. .++....+++|+++|++|++|++||+|++...++++|++|+..++.+++ ++||||||||+|
T Consensus 232 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~GVdgiiTD~P 309 (309)
T cd08602 232 YADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFL-DAGVDGLFTDFP 309 (309)
T ss_pred hceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHH-HhCCCEEeCCCC
Confidence 7888888777666532 2234456789999999999999999999998999999999999999985 899999999998
No 6
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=1.7e-47 Score=405.21 Aligned_cols=283 Identities=25% Similarity=0.305 Sum_probs=214.1
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccc
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFS 349 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i 349 (671)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||....|++|... .+.| +|
T Consensus 1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~-----~g~~-~v 74 (318)
T cd08600 1 KIIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRK-----DGRY-YV 74 (318)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCccccccccccc-----CCce-eE
Confidence 68999999999999999999999999999999999999999999999999999999977777777543 2455 79
Q ss_pred ccCCHHHHhccCCCcCCCCCCC---CCC--CCCCcccccCCcccCHHHHHHHHhcc-----CcccEEEEecCchhhhhhc
Q 005894 350 FDLTWTEIQSLKPQISSPFDKS---NPP--IIRNPEAKNKGKFVTLDGFLEFAKTK-----AVSGVLININNAAYLASKK 419 (671)
Q Consensus 350 ~dlT~~EL~~L~~~~~~~f~~~---~~~--~~r~~~~~~~~~ipTLeEvL~~~~~~-----~~~~i~IeIK~~~~~~~~~ 419 (671)
.++||+||++|+++ .||+.. ..+ ..|.+....+++||||+|+|+++++. ..++++||||.+.... ..
T Consensus 75 ~dlT~aEL~~ld~g--~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~-~~ 151 (318)
T cd08600 75 IDFTLDELKSLSVT--ERFDIENGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHH-QE 151 (318)
T ss_pred eeCcHHHHhhCCCC--CCcccccccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhh-hc
Confidence 99999999999988 455421 000 11222223467999999999999752 1358999999764322 23
Q ss_pred CCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhc-C-C----CceEEEEeecc-cCC-----------------
Q 005894 420 GLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQD-V-P----AYKKVLHIRKE-VSA----------------- 475 (671)
Q Consensus 420 ~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~-~-p----~~~~~~l~~~~-~~d----------------- 475 (671)
+.++++.++++++++++... ..+|+|+||++++|+++|+ . | ++++++++... ...
T Consensus 152 ~~~~~~~v~~~l~~~~~~~~-~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
T cd08600 152 GKDIAAATLEVLKKYGYTSK-NDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWM 230 (318)
T ss_pred cccHHHHHHHHHHHcCCCCC-CCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhh
Confidence 45799999999999998631 1489999999999999996 6 9 99999998521 100
Q ss_pred CChhHHHHHHHHHHHhcCCceeeecCCCc-ccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhc
Q 005894 476 APREVVEEIKKYASAVTVTRTSVISTTES-FTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGV 554 (671)
Q Consensus 476 ~~~~~l~~i~~~a~~v~~~~~~v~~~~~~-~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~ 554 (671)
.+...+.+++.+|+++++++..+.+.... +...++++|+++|++|+.|++||+|+++..++ +.|......+++.++
T Consensus 231 ~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~---~~~~~~~~~~~l~~~ 307 (318)
T cd08600 231 FTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPEY---AKDADQLLDALLNKA 307 (318)
T ss_pred cCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCccccc---cCCHHHHHHHHHHhc
Confidence 02234667778888888877655442111 23345789999999999999999999973222 334433223333589
Q ss_pred CccEEEECChh
Q 005894 555 GVDGITTEFPA 565 (671)
Q Consensus 555 GVDgIiTD~P~ 565 (671)
||||||||+|+
T Consensus 308 GVDGiiTD~P~ 318 (318)
T cd08600 308 GVDGVFTDFPD 318 (318)
T ss_pred CCcEEEcCCCC
Confidence 99999999995
No 7
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=1.5e-47 Score=403.14 Aligned_cols=278 Identities=28% Similarity=0.394 Sum_probs=212.5
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccc
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFS 349 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i 349 (671)
|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+..+.++.+ +....|..|
T Consensus 1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~------~~~~~~~~v 74 (296)
T cd08559 1 PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR------GRKDTGYFV 74 (296)
T ss_pred CeEEEeCCcCCCCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCcccccccc------ccCCCCeee
Confidence 78999999999999999999999999999999999999999999999999999999955444332 112333489
Q ss_pred ccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccC-----cccEEEEecCchhhhhhcCCcHH
Q 005894 350 FDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKA-----VSGVLININNAAYLASKKGLGVV 424 (671)
Q Consensus 350 ~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~-----~~~i~IeIK~~~~~~~~~~~~~~ 424 (671)
.++||+||++|+++ .||...+ ..|.+.+..+++||||+|+|+++++.. .++++||||...... ..+..++
T Consensus 75 ~~~t~~eL~~l~~~--~~~~~~~--~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~-~~~~~~~ 149 (296)
T cd08559 75 IDFTLAELKTLRAG--SWFNQRY--PERAPSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHK-QEGPDIE 149 (296)
T ss_pred ecCcHHHHhcCCCC--Ccccccc--cccCccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhh-hcCCCHH
Confidence 99999999999987 3454321 224444445689999999999998731 358999999764321 1245789
Q ss_pred HHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCC-----------CChhHHHHHHHHHHHhc
Q 005894 425 DAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSA-----------APREVVEEIKKYASAVT 492 (671)
Q Consensus 425 ~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d-----------~~~~~l~~i~~~a~~v~ 492 (671)
++|+++|+++++.. ..++|+|+||++++|+++|++ |++++++++...... .....+..++.+|.+++
T Consensus 150 ~~v~~~l~~~~~~~-~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (296)
T cd08559 150 EKLLEVLKKYGYTG-KNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIG 228 (296)
T ss_pred HHHHHHHHHcCCCC-CCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhC
Confidence 99999999998752 114999999999999999999 999999998653221 12344555555777777
Q ss_pred CCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhc-CccEEEECCh
Q 005894 493 VTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGV-GVDGITTEFP 564 (671)
Q Consensus 493 ~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~-GVDgIiTD~P 564 (671)
+....+..........++++|+++|++|+.|++||+|++...++++|.. ++.+++ ++ ||||||||+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~~~----~~~~l~-~~~GVdgIiTD~P 296 (296)
T cd08559 229 PWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQ----DMDALY-NAAGVDGVFTDFP 296 (296)
T ss_pred CCHHhccccccccccCchHHHHHHHHcCCEEEEEEecCccccccccccc----CHHHHH-HHhCCCEEEcCCC
Confidence 6554433221112333479999999999999999999976555555554 577774 77 9999999998
No 8
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=4.1e-47 Score=406.26 Aligned_cols=294 Identities=23% Similarity=0.319 Sum_probs=221.6
Q ss_pred cCCceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccc
Q 005894 267 IDRPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERG 346 (671)
Q Consensus 267 i~~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G 346 (671)
..+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+....|+.|.+. .+.|
T Consensus 24 ~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~~~~-----~g~~ 98 (355)
T PRK11143 24 SAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRARK-----DGRY 98 (355)
T ss_pred CCCcEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCccccccccccc-----CCce
Confidence 34899999999999999999999999999999999999999999999999999999999977778776543 2444
Q ss_pred cccccCCHHHHhccCCCcCCCCCCC---CCC--CCCCcccccCCcccCHHHHHHHHhcc-----CcccEEEEecCchhhh
Q 005894 347 IFSFDLTWTEIQSLKPQISSPFDKS---NPP--IIRNPEAKNKGKFVTLDGFLEFAKTK-----AVSGVLININNAAYLA 416 (671)
Q Consensus 347 ~~i~dlT~~EL~~L~~~~~~~f~~~---~~~--~~r~~~~~~~~~ipTLeEvL~~~~~~-----~~~~i~IeIK~~~~~~ 416 (671)
++.++||+||++|+++ .||+.. ..+ ..|.+....+++||||+|+|++++.. ..++++||||......
T Consensus 99 -~v~dlT~aEL~~ld~~--~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~~ 175 (355)
T PRK11143 99 -YAIDFTLDEIKSLKFT--EGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHH 175 (355)
T ss_pred -eEeeCcHHHHhhCCCC--CCcccccccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCccccc
Confidence 8999999999999998 354310 000 12333333468999999999999863 1357999999864321
Q ss_pred hhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhc-C-CCc----eEEEEeecc-cC-C-------------
Q 005894 417 SKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQD-V-PAY----KKVLHIRKE-VS-A------------- 475 (671)
Q Consensus 417 ~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~-~-p~~----~~~~l~~~~-~~-d------------- 475 (671)
..+.+++++|+++|+++++... .++|+|+||++++|+++++ . |++ ++++++... .. .
T Consensus 176 -~~~~~~~~~v~~~l~~~g~~~~-~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (355)
T PRK11143 176 -QEGKDIAAKVLEVLKKYGYTGK-DDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYN 253 (355)
T ss_pred -ccchhHHHHHHHHHHHhCCCCC-CCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccc
Confidence 2345689999999999998521 1599999999999999988 6 874 888886421 10 0
Q ss_pred C----ChhHHHHHHHHHHHhcCCceeeecC-CCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHH
Q 005894 476 A----PREVVEEIKKYASAVTVTRTSVIST-TESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATF 550 (671)
Q Consensus 476 ~----~~~~l~~i~~~a~~v~~~~~~v~~~-~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~ 550 (671)
. ....+.++..+|.++.+....+.+. ...+....+++|+++|++|+.|++||||++. ++ +|..|+......+
T Consensus 254 ~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~--~~-~~~~d~~~~~~~~ 330 (355)
T PRK11143 254 YDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVHPYTVRADQ--LP-EYATDVNQLYDIL 330 (355)
T ss_pred hhhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEEEEEEecccc--ch-hhhcChHHHHHHH
Confidence 0 1123555666677776654433221 1233445568999999999999999999884 43 7888877433332
Q ss_pred HhhcCccEEEECChhhHHHHHHh
Q 005894 551 AQGVGVDGITTEFPATASKYFRS 573 (671)
Q Consensus 551 l~~~GVDgIiTD~P~~~~~~~~~ 573 (671)
+.++||||||||+|+++.+++.+
T Consensus 331 ~~~~GVDGIiTD~P~~~~~~l~~ 353 (355)
T PRK11143 331 YNQAGVDGVFTDFPDKAVKFLNK 353 (355)
T ss_pred HHccCCCEEEcCChHHHHHHHhc
Confidence 35899999999999999998865
No 9
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.3e-46 Score=400.78 Aligned_cols=299 Identities=18% Similarity=0.220 Sum_probs=220.2
Q ss_pred CceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCC-CcccccCcc--cccccccccc-ccccc-
Q 005894 269 RPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESP-DLIGKTTAA--TVFMSKATSV-PEIQK- 343 (671)
Q Consensus 269 ~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~-~L~rtT~~~--~~f~~r~~~~-~~~~~- 343 (671)
.++||||||++|.+||||++||++|+++|||+||||||+||||++||+||. +|+||||+. +.|++|+++. .++..
T Consensus 16 ~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g~~~ 95 (356)
T cd08560 16 TDFSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPANAT 95 (356)
T ss_pred CceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhccccccccccc
Confidence 678999999999999999999999999999999999999999999999997 899999953 6788887652 22222
Q ss_pred ---ccccccccCCHHHHhccCCCcC--CCCC------CCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCc
Q 005894 344 ---ERGIFSFDLTWTEIQSLKPQIS--SPFD------KSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNA 412 (671)
Q Consensus 344 ---~~G~~i~dlT~~EL~~L~~~~~--~~f~------~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~ 412 (671)
..++++.|+||+||++|+.++. .+++ ....|.+|+..+.++++||||+|+|+++++.+ ++++||||.+
T Consensus 96 ~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~~-v~l~iEiK~~ 174 (356)
T cd08560 96 KPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSLG-VKMTPELKSP 174 (356)
T ss_pred cccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhcC-ceEEEEeCCC
Confidence 2345899999999999987532 1111 00123466666766789999999999998753 6899999987
Q ss_pred hhhhhhcC----CcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceE--EEEeecc-cCCC---ChhHH
Q 005894 413 AYLASKKG----LGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKK--VLHIRKE-VSAA---PREVV 481 (671)
Q Consensus 413 ~~~~~~~~----~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~--~~l~~~~-~~d~---~~~~l 481 (671)
.......| ..++++++++++++++.. ++|+|||||++.|+++++. |++++ +++.+.. ..+. ....+
T Consensus 175 ~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~---~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~l 251 (356)
T cd08560 175 SVPMPFDGNYTQEDYAQQMIDEYKEAGVPP---SRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDDTADFPATWSPSM 251 (356)
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCCC---CCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCccccccccHHHHH
Confidence 65321111 158899999999999863 5999999999999999888 97755 4443321 0000 11234
Q ss_pred HHH-HHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCccccc--c-ccc---------CCChHHHHH
Q 005894 482 EEI-KKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSI--A-FDY---------LADPLIEVA 548 (671)
Q Consensus 482 ~~i-~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~--~-~d~---------~~D~~~e~~ 548 (671)
+++ ..+++++++++..+.+.........+.+|+++|++|+.|++||++++...+ + +.| .+|...++.
T Consensus 252 ~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (356)
T cd08560 252 DELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDMYNVLD 331 (356)
T ss_pred HHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeecCcccccCcccccccccccccccccHHHHHH
Confidence 444 334666777655554432222335678999999999999999998775433 3 333 344456777
Q ss_pred HHHhhcCccEEEECChhhHHHHH
Q 005894 549 TFAQGVGVDGITTEFPATASKYF 571 (671)
Q Consensus 549 ~~l~~~GVDgIiTD~P~~~~~~~ 571 (671)
.++.++|||||+||+|++...|.
T Consensus 332 ~~~~~~GvDGvftD~p~~~~~~~ 354 (356)
T cd08560 332 VLARDVGILGIFSDWPATVTYYA 354 (356)
T ss_pred HHHHhcCCCEEEccCCCceeEec
Confidence 76568999999999999876554
No 10
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.6e-45 Score=379.10 Aligned_cols=248 Identities=24% Similarity=0.299 Sum_probs=197.2
Q ss_pred eEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccc--cccc
Q 005894 271 LIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKE--RGIF 348 (671)
Q Consensus 271 ~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~--~G~~ 348 (671)
+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|+ + +| .
T Consensus 2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~-----------------~~~~g-~ 63 (256)
T cd08601 2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTN-----------------IERPG-P 63 (256)
T ss_pred ceEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccC-----------------CCCCc-e
Confidence 68999999999999999999999999999999999999999999999999999999 5 67 7
Q ss_pred cccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHH
Q 005894 349 SFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVT 428 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~ 428 (671)
|.++||+||++++.+ .+|... ++..+++.+ .++++|||+|+|++++++ .+++||||..... ..+++.++
T Consensus 64 v~~~t~~el~~l~~~--~~~~~~-~~~~~~~~~-~~~~iptL~evl~~~~~~--~~l~IEiK~~~~~-----~~~~~~v~ 132 (256)
T cd08601 64 VKDYTLAEIKQLDAG--SWFNKA-YPEYARESY-SGLKVPTLEEVIERYGGR--ANYYIETKSPDLY-----PGMEEKLL 132 (256)
T ss_pred eecCcHHHHHhcCCC--cccccc-Ccccccccc-CCccCCCHHHHHHHhccC--ceEEEEeeCCCCC-----CCHHHHHH
Confidence 999999999999986 444321 122233333 368999999999999875 5899999975321 25788999
Q ss_pred HHHHhcCCCCCC--CceEEEEcCChHHHHHHhcC-CCceEEEEeecccC-CCChhHHHHHHHHHHHhcCCceeeecCCCc
Q 005894 429 KALSNATFDKQS--TQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVS-AAPREVVEEIKKYASAVTVTRTSVISTTES 504 (671)
Q Consensus 429 ~~l~~~~~~~~~--~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~-d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~ 504 (671)
++++++++..+. .++++|+||++++|++++++ |+++++++++.... ......++.+..++.+ +.+..
T Consensus 133 ~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-- 203 (256)
T cd08601 133 ATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIG-------IGPSI-- 203 (256)
T ss_pred HHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHhcCeE-------eCCch--
Confidence 999999876211 15999999999999999998 99999998754321 1112223333322222 22221
Q ss_pred ccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHH
Q 005894 505 FTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYF 571 (671)
Q Consensus 505 ~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~ 571 (671)
....+++++.+|++|+.|++||+|+.+ ++.+++ ++||||||||+|+.+.+++
T Consensus 204 -~~~~~~~v~~~~~~g~~v~~wTvn~~~-------------~~~~l~-~~Gvd~IiTD~p~~~~~~~ 255 (256)
T cd08601 204 -ADADPWMVHLIHKKGLLVHPYTVNEKA-------------DMIRLI-NWGVDGMFTNYPDRLKEVL 255 (256)
T ss_pred -hhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEeCCHHHHHHhh
Confidence 234578999999999999999999987 898885 9999999999999988765
No 11
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=3.3e-46 Score=383.90 Aligned_cols=238 Identities=19% Similarity=0.216 Sum_probs=183.2
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccc
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFS 349 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i 349 (671)
|+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|| ++| .|
T Consensus 1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~-----------------~~g-~v 62 (263)
T cd08580 1 PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTN-----------------GSG-AV 62 (263)
T ss_pred CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccC-----------------CCC-Ch
Confidence 689999999999999999999999999999999999999999999999999999999 788 89
Q ss_pred ccCCHHHHhccCCCcCCCCCCCCCCCCCCcccc-cCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHH
Q 005894 350 FDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAK-NKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVT 428 (671)
Q Consensus 350 ~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~-~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~ 428 (671)
.++||+||++|+++ .||... .+.+ +. .+++||||+|+|+++++. .++||||.... ..+++.|+
T Consensus 63 ~~~t~~el~~ld~g--~~~~~~----~~~~-~~~~~~~iPtL~evl~~~~~~---~l~iEiK~~~~------~~~~~~v~ 126 (263)
T cd08580 63 SAYTAAQLATLNAG--YNFKPE----GGYP-YRGKPVGIPTLEQVLRAFPDT---PFILDMKSLPA------DPQAKAVA 126 (263)
T ss_pred hhCcHHHHhcCCCc--cccccc----cCcc-cCCCCCcCccHHHHHHhhcCC---eEEEEECCCCc------HHHHHHHH
Confidence 99999999999987 444311 0111 21 246899999999999863 79999997532 15789999
Q ss_pred HHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CC-------ceEEEEeecccCC---CCh-----------hHHHHHHH
Q 005894 429 KALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PA-------YKKVLHIRKEVSA---APR-----------EVVEEIKK 486 (671)
Q Consensus 429 ~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~-------~~~~~l~~~~~~d---~~~-----------~~l~~i~~ 486 (671)
++|+++++. ++|+|+|||++.|+++++. |+ +.++++.+..... ... ..+..+..
T Consensus 127 ~~i~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T cd08580 127 RVLERENAW----SRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVET 202 (263)
T ss_pred HHHHhcCCC----CCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchheee
Confidence 999999987 7999999999999999999 84 3333332110000 000 00000001
Q ss_pred HHHHhcCCceeeecCCCcccccchHHHHHHHHc-CCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChh
Q 005894 487 YASAVTVTRTSVISTTESFTTNATNILRDLHSA-NISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPA 565 (671)
Q Consensus 487 ~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~-Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~ 565 (671)
+ +++. ...++ .+...++++|+++|++ |+.|++||+|++. +|++++ ++||||||||+|+
T Consensus 203 ~--~~~~--~~~~~---~~~l~t~~~V~~~h~~~gl~V~~WTVN~~~-------------~~~~l~-~~GVDgIiTD~P~ 261 (263)
T cd08580 203 F--TLGE--GRSPV---QATLWTPAAVDCFRRNSKVKIVLFGINTAD-------------DYRLAK-CLGADAVMVDSPA 261 (263)
T ss_pred e--cccc--ccccc---ccccCCHHHHHHHHhcCCcEEEEEEeCCHH-------------HHHHHH-HcCCCEEEeCCcc
Confidence 1 0111 11122 2345678999999999 9999999999998 899985 9999999999998
Q ss_pred h
Q 005894 566 T 566 (671)
Q Consensus 566 ~ 566 (671)
.
T Consensus 262 ~ 262 (263)
T cd08580 262 A 262 (263)
T ss_pred c
Confidence 5
No 12
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=6.2e-45 Score=369.42 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=181.5
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ ++| .|.+
T Consensus 1 iiaHRG~~~~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~-----------------~~~-~v~~ 62 (229)
T cd08581 1 LVAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTG-----------------VEG-LLHE 62 (229)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccC-----------------CCc-eecc
Confidence 6899999999999999999999999999999999999999999999999999999 677 8999
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKAL 431 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l 431 (671)
+||+||++|+.....||+. .+ .+++||||+|+|+++++...++++||||..... ...+.+.+.+++
T Consensus 63 ~t~~el~~l~~~~~~~~~~---------~~-~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~----~~~~~~~v~~~~ 128 (229)
T cd08581 63 LEDAELDSLRVAEPARFGS---------RF-AGEPLPSLAAVVQWLAQHPQVTLFVEIKTESLD----RFGLERVVDKVL 128 (229)
T ss_pred CCHHHHhhcccccCccccc---------cc-CCccCCCHHHHHHHHhhCCCceEEEEecCCccc----ccchhHHHHHHH
Confidence 9999999998765455542 23 358999999999999873235899999976432 123445566666
Q ss_pred HhcC-CCCCCCceEEEEcCChHHHHHHhcCCCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccch
Q 005894 432 SNAT-FDKQSTQQVMIQSDDSSVLSKFQDVPAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNAT 510 (671)
Q Consensus 432 ~~~~-~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~ 510 (671)
++++ +. ++++|+|||+++|+++|++|.++++++..... ... ...+..+++ ..+++... . .
T Consensus 129 ~~~~~~~----~~~~i~SF~~~~l~~~r~~~~~~~~~l~~~~~----~~~----~~~~~~~~~--~~~~~~~~--~---~ 189 (229)
T cd08581 129 RALPAVA----AQRVLISFDYDLLALAKQQGGPRTGWVLPDWD----DAS----LAEADELQP--DYLFCDKN--L---L 189 (229)
T ss_pred HHHHhcc----CCeEEEeCCHHHHHHHHhcCCCCeEEEeccCC----hHH----HHHHHhhCC--CEEecccc--c---C
Confidence 6654 44 69999999999999999998899998874321 111 123444554 34444321 1 1
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECCh
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P 564 (671)
..++++|++|++|++||+|++. ++.+++ ++||||||||+|
T Consensus 190 ~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~GVdgiiTD~P 229 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVNEPA-------------EALALA-ARGVALIETDNI 229 (229)
T ss_pred hhhHHHHhCCceEEEEEcCCHH-------------HHHHHH-HhCCcEEEcCCC
Confidence 4588899999999999999998 899885 999999999998
No 13
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=2e-44 Score=370.60 Aligned_cols=237 Identities=16% Similarity=0.170 Sum_probs=186.6
Q ss_pred CceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccc
Q 005894 269 RPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIF 348 (671)
Q Consensus 269 ~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~ 348 (671)
+|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|+ ++| .
T Consensus 7 ~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~-----------------~~~-~ 68 (249)
T PRK09454 7 YPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSN-----------------GWG-V 68 (249)
T ss_pred CCeEEECCCCCCCCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCC-----------------CCC-c
Confidence 5799999999999999999999999999999999999999999999999999999999 677 7
Q ss_pred cccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHH
Q 005894 349 SFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVT 428 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~ 428 (671)
|.++||+||++++.+ .+|+ +.+ .+++||||+|+|+++++.+ +.++||||...... ....+.+.
T Consensus 69 v~~~t~~el~~l~~~--~~~~---------~~~-~~~~iPtL~evl~~~~~~~-~~l~iEiK~~~~~~----~~~~~~v~ 131 (249)
T PRK09454 69 AGELTWQDLAQLDAG--SWFS---------AAF-AGEPLPTLSQVAARCRAHG-MAANIEIKPTTGRE----AETGRVVA 131 (249)
T ss_pred hhhCCHHHHHhcCCC--CccC---------CCC-CCCcCCCHHHHHHHHHhcC-CEEEEEECCCCCcc----hhHHHHHH
Confidence 999999999999987 3443 222 3578999999999997642 57999999643211 12333444
Q ss_pred HHHHhc--CCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcc
Q 005894 429 KALSNA--TFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESF 505 (671)
Q Consensus 429 ~~l~~~--~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~ 505 (671)
.+++.+ ++. ++++++||++++|++++++ |.+++++++..... .. ...+...+. ..+++.+
T Consensus 132 ~~~~~~~~~~~----~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~-----~~---~~~~~~~~~--~~~~~~~--- 194 (249)
T PRK09454 132 LAARALWAGAA----VPPLLSSFSEDALEAARQAAPELPRGLLLDEWPD-----DW---LELTRRLGC--VSLHLNH--- 194 (249)
T ss_pred HHHHHHhcCCC----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccc-----cH---HHHHHhcCC--eEEeccc---
Confidence 444443 333 5899999999999999999 99999998753211 11 112222222 3344432
Q ss_pred cccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHH
Q 005894 506 TTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYF 571 (671)
Q Consensus 506 ~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~ 571 (671)
...++++++++|++|++|++||+|++. ++.+++ ++||||||||+|+.+..++
T Consensus 195 ~~~~~~~v~~~~~~g~~v~~WTvn~~~-------------~~~~l~-~~GVdgIiTD~p~~~~~~~ 246 (249)
T PRK09454 195 KLLDEARVAALKAAGLRILVYTVNDPA-------------RARELL-RWGVDCICTDRIDLIGPDF 246 (249)
T ss_pred ccCCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCChHhcCccc
Confidence 344789999999999999999999997 888885 9999999999999877554
No 14
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=2e-44 Score=380.18 Aligned_cols=253 Identities=17% Similarity=0.265 Sum_probs=192.1
Q ss_pred CCceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccc
Q 005894 268 DRPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGI 347 (671)
Q Consensus 268 ~~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~ 347 (671)
..|+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|+ ++|
T Consensus 25 ~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~-----------------~~g- 86 (300)
T cd08612 25 FPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCG-----------------VDK- 86 (300)
T ss_pred CCCCEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCC-----------------CCc-
Confidence 47899999999999999999999999999999999999999999999999999999999 778
Q ss_pred ccccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHH
Q 005894 348 FSFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAV 427 (671)
Q Consensus 348 ~i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v 427 (671)
.|.++||+||++++.+....|+.. .++.+.+ .+++||||+|+|+++++ +.++||||.... .+++++
T Consensus 87 ~V~~~t~~eL~~l~~~~~~~~~~~---~~~~~~~-~g~~IPtL~EvL~~~~~---~~lnIEiK~~~~-------~~~~~v 152 (300)
T cd08612 87 LVSDLNYADLPPYLEKLEVTFSPG---DYCVPKG-SDRRIPLLEEVFEAFPD---TPINIDIKVEND-------ELIKKV 152 (300)
T ss_pred ccccCCHHHHhhccccccccccCC---ccccccC-CCCCCCCHHHHHHhCCC---CeEEEEECCCch-------HHHHHH
Confidence 799999999999954321111100 1112233 36899999999999965 389999997531 478899
Q ss_pred HHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccC--------CC-----ChhHHHH--HHHHHHHh
Q 005894 428 TKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVS--------AA-----PREVVEE--IKKYASAV 491 (671)
Q Consensus 428 ~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~--------d~-----~~~~l~~--i~~~a~~v 491 (671)
+++++++++. ++++++|||+++|+++++. |+++++++++.... .. ....+.. ........
T Consensus 153 ~~~i~~~~~~----~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (300)
T cd08612 153 SDLVRKYKRE----DITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKTY 228 (300)
T ss_pred HHHHHHcCCC----CcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCccccccccchhhhhhhc
Confidence 9999999987 7999999999999999999 99999886532100 00 0000000 00000000
Q ss_pred c------CCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChh
Q 005894 492 T------VTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPA 565 (671)
Q Consensus 492 ~------~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~ 565 (671)
+ .....+++. .+...++++|+++|++|+.|++||+|++. +|.+++ ++||||||||+|+
T Consensus 229 ~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~P~ 292 (300)
T cd08612 229 FPKSMSRLNRFVLFLI--DWLLMRPSLFRHLQKRGIQVYGWVLNDEE-------------EFERAF-ELGADGVMTDYPT 292 (300)
T ss_pred ccccccccccceeccc--ccccCCHHHHHHHHHCCCEEEEeecCCHH-------------HHHHHH-hcCCCEEEeCCHH
Confidence 0 000111111 12345789999999999999999999998 899985 9999999999999
Q ss_pred hHHHHHH
Q 005894 566 TASKYFR 572 (671)
Q Consensus 566 ~~~~~~~ 572 (671)
.+.+++.
T Consensus 293 ~l~~~l~ 299 (300)
T cd08612 293 KLREFLD 299 (300)
T ss_pred HHHHHHh
Confidence 9988764
No 15
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=6.2e-44 Score=362.67 Aligned_cols=228 Identities=22% Similarity=0.252 Sum_probs=187.1
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|+ ++| .|.+
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~-----------------~~~-~i~~ 62 (229)
T cd08562 1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTN-----------------GSG-AVTE 62 (229)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccC-----------------CCc-eeec
Confidence 6899999999999999999999999999999999999999999999999999999 677 8999
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKAL 431 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l 431 (671)
+||+||++|+.+ .|++ +.+ .+++||||+|+|+++++.+ +.++||||..... ...+++.|.+++
T Consensus 63 lt~~el~~l~~~--~~~~---------~~~-~~~~iptl~evl~~~~~~~-~~l~iEiK~~~~~----~~~~~~~v~~~l 125 (229)
T cd08562 63 LTWAELAQLDAG--SWFS---------PEF-AGEPIPTLADVLELARELG-LGLNLEIKPDPGD----EALTARVVAAAL 125 (229)
T ss_pred CcHHHHhhcCCC--cccC---------CCC-CCCCCCCHHHHHHHHHhcC-CEEEEEECCCCCc----cHHHHHHHHHHH
Confidence 999999999976 3332 223 3579999999999998653 5799999975421 235778899999
Q ss_pred HhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccch
Q 005894 432 SNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNAT 510 (671)
Q Consensus 432 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~ 510 (671)
++++... ++++++||++++|+.+++. |+++++++......+ ...++...+. ..+.+.+ ...++
T Consensus 126 ~~~~~~~---~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~--------~~~~~~~~~~--~~~~~~~---~~~~~ 189 (229)
T cd08562 126 RELWPHA---SKLLLSSFSLEALRAARRAAPELPLGLLFDTLPAD--------WLELLAALGA--VSIHLNY---RGLTE 189 (229)
T ss_pred HHhcCCc---CCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcC--------HHHHHHHcCC--eEEecCh---hhCCH
Confidence 9998742 6999999999999999999 999999987543211 1122333332 3344432 33467
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECCh
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P 564 (671)
++|+.+|++|+.|++||+|++. ++.+++ ++||||||||+|
T Consensus 190 ~~v~~~~~~g~~v~~wTvn~~~-------------~~~~~~-~~gVdgiiTD~p 229 (229)
T cd08562 190 EQVKALKDAGYKLLVYTVNDPA-------------RAAELL-EWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCC
Confidence 8999999999999999999987 888885 999999999998
No 16
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=3.9e-44 Score=363.49 Aligned_cols=220 Identities=20% Similarity=0.268 Sum_probs=179.8
Q ss_pred eEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccccc
Q 005894 271 LIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSF 350 (671)
Q Consensus 271 ~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~ 350 (671)
+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|+ ++| .|.
T Consensus 1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~-----------------~~g-~v~ 62 (226)
T cd08568 1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGG-----------------VDL-KVK 62 (226)
T ss_pred CEEeccCCCCCCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCC-----------------CCc-eee
Confidence 48999999999999999999999999999999999999999999999999999999 778 899
Q ss_pred cCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHH
Q 005894 351 DLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKA 430 (671)
Q Consensus 351 dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~ 430 (671)
++||+||++++.+ +++||||+|+|++++++ ..++||||.. ..++.++++
T Consensus 63 ~~t~~eL~~l~~~--------------------g~~iPtL~evl~~~~~~--~~l~iEiK~~---------~~~~~~~~~ 111 (226)
T cd08568 63 ELTYKELKKLHPG--------------------GELIPTLEEVFRALPND--AIINVEIKDI---------DAVEPVLEI 111 (226)
T ss_pred cCCHHHHhhCCCC--------------------CCcCCCHHHHHHhcCCC--cEEEEEECCc---------cHHHHHHHH
Confidence 9999999999874 36899999999999875 4799999964 346789999
Q ss_pred HHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCc----c
Q 005894 431 LSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTES----F 505 (671)
Q Consensus 431 l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~----~ 505 (671)
++++++. ++++++||+++.|+++++. |.+++++++........ ...++...+. ..+++.... .
T Consensus 112 l~~~~~~----~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~ 179 (226)
T cd08568 112 VEKFNAL----DRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFS------IPELHEKLKL--YSLHVPIDAIGYIG 179 (226)
T ss_pred HHHcCCC----CcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccC------HHHHHHhcCC--cEeccchhhhcccc
Confidence 9999987 7999999999999999999 99999999854311111 1112222221 222221100 0
Q ss_pred cccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhh
Q 005894 506 TTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPAT 566 (671)
Q Consensus 506 ~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~ 566 (671)
...++++++++|++|+.|++||+|++. +++++. .. |||||||+|+.
T Consensus 180 ~~~~~~~v~~~~~~G~~v~~WTvn~~~-------------~~~~l~-~~-vdgiiTD~p~~ 225 (226)
T cd08568 180 FEKFVELLRLLRKLGLKIVLWTVNDPE-------------LVPKLK-GL-VDGVITDDVEK 225 (226)
T ss_pred ccccHHHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-hh-CCEEEccCccc
Confidence 112478999999999999999999987 788773 65 99999999975
No 17
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=1.1e-43 Score=361.14 Aligned_cols=229 Identities=25% Similarity=0.395 Sum_probs=190.5
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccc
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFS 349 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i 349 (671)
++||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|.|+|+ ++| .|
T Consensus 1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~-----------------~~~-~i 62 (230)
T cd08563 1 TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTN-----------------GKG-YV 62 (230)
T ss_pred CeEEEccCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccC-----------------CCC-ch
Confidence 479999999999999999999999999999999999999999999999999999999 677 79
Q ss_pred ccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHH
Q 005894 350 FDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTK 429 (671)
Q Consensus 350 ~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~ 429 (671)
.++||+||++++.+ .+|+ +.+ .++++|||+|+|+++++.+ +.++||||...... ..+++.+.+
T Consensus 63 ~~~t~~el~~l~~~--~~~~---------~~~-~~~~iptL~evl~~~~~~~-~~l~leiK~~~~~~----~~~~~~l~~ 125 (230)
T cd08563 63 KDLTLEELKKLDAG--SWFD---------EKF-TGEKIPTLEEVLDLLKDKD-LLLNIEIKTDVIHY----PGIEKKVLE 125 (230)
T ss_pred hhCCHHHHHhcCCC--CccC---------ccC-CCCcCCCHHHHHHHHHhcC-cEEEEEECCCCCcC----hhHHHHHHH
Confidence 99999999999987 3332 122 3578999999999998642 57999999764321 257889999
Q ss_pred HHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCccccc
Q 005894 430 ALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTN 508 (671)
Q Consensus 430 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~ 508 (671)
+++++++. ++++++||+++.++.+++. |++++++++..... ....++...+. ..+.+.. ...
T Consensus 126 ~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------~~~~~~~~~~~--~~v~~~~---~~~ 188 (230)
T cd08563 126 LVKEYNLE----DRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQ--------DPKDYAKKIGA--DSLHPDF---KLL 188 (230)
T ss_pred HHHHcCCC----CCEEEEcCCHHHHHHHHHHCCCCcEEEEecCccc--------CHHHHHHHhCC--EEEccCc---hhc
Confidence 99999977 7999999999999999999 99999998754322 12334433332 3344432 334
Q ss_pred chHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECCh
Q 005894 509 ATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 509 ~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P 564 (671)
++++++++|++|++|++||+|+.. ++.+++ ++||||||||+|
T Consensus 189 ~~~~i~~~~~~g~~v~~Wtvn~~~-------------~~~~~~-~~GVdgi~TD~P 230 (230)
T cd08563 189 TEEVVEELKKRGIPVRLWTVNEEE-------------DMKRLK-DLGVDGIITNYP 230 (230)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEeCCCC
Confidence 689999999999999999999987 899885 999999999998
No 18
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=1.1e-43 Score=365.39 Aligned_cols=244 Identities=21% Similarity=0.305 Sum_probs=183.5
Q ss_pred CceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccc
Q 005894 269 RPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIF 348 (671)
Q Consensus 269 ~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~ 348 (671)
+|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+....++.+ ..| .
T Consensus 1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~~~~~---------~~~-~ 70 (252)
T cd08574 1 KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVADVFPER---------AHE-R 70 (252)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCcccccc---------ccc-c
Confidence 478999999999999999999999999999999999999999999999999999999943322222 123 6
Q ss_pred cccCCHHHHhccCCCcCCCCCCCCC-----CCCCC--cccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCC
Q 005894 349 SFDLTWTEIQSLKPQISSPFDKSNP-----PIIRN--PEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGL 421 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~~~f~~~~~-----~~~r~--~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~ 421 (671)
|.++||+||++|+++ .||+.... ...+. ..+ .+++||||+|+|+++++.+ ..++||||...... ....
T Consensus 71 v~~~T~~eL~~ld~g--~~f~~~~~~~~~~~~~~~~~~~~-~~~~IPtL~evl~~~~~~~-~~l~iEiK~~~~~~-~~~~ 145 (252)
T cd08574 71 ASMFTWTDLQQLNAG--QWFLKDDPFWTASSLSESDREEA-GNQSIPSLAELLRLAKKHN-KSVIFDLRRPPPNH-PYYQ 145 (252)
T ss_pred hhcCCHHHHhhCCCC--CcccCCCccchhcccccchhhhc-CCCCCCCHHHHHHHHHHcC-CeEEEEecCCcccC-ccHH
Confidence 899999999999998 56642100 00000 122 3689999999999998643 47999999753100 0112
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeec
Q 005894 422 GVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVIS 500 (671)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~ 500 (671)
.++++++++++++++. .+++++||+.. ++.++++ |+++++++.... ...+ ...+. ..+++
T Consensus 146 ~~~~~v~~~l~~~~~~----~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~--------~~~~----~~~~~--~~~~~ 206 (252)
T cd08574 146 SYVNITLDTILASGIP----QHQVFWLPDEY-RALVRKVAPGFQQVSGRKLP--------VESL----RENGI--SRLNL 206 (252)
T ss_pred HHHHHHHHHHHHcCCC----cccEEEccHHH-HHHHHHHCCCCeEeeccccc--------hHHH----HhcCC--eEEcc
Confidence 5789999999999986 46666666654 7999999 999988643211 1111 12222 34555
Q ss_pred CCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 501 TTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 501 ~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
.+ ...++++|+.+|++|+.|++||||++. ++.+++ ++||||||||-
T Consensus 207 ~~---~~~~~~~v~~~~~~g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD~ 252 (252)
T cd08574 207 EY---SQLSAQEIREYSKANISVNLYVVNEPW-------------LYSLLW-CSGVQSVTTNA 252 (252)
T ss_pred Cc---ccCCHHHHHHHHHCCCEEEEEccCCHH-------------HHHHHH-HcCCCEEecCc
Confidence 43 344679999999999999999999998 899885 99999999993
No 19
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.9e-43 Score=365.49 Aligned_cols=252 Identities=19% Similarity=0.197 Sum_probs=192.7
Q ss_pred CCceEEeccCCCCC--CCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccc
Q 005894 268 DRPLIITHNGASGV--YAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKER 345 (671)
Q Consensus 268 ~~p~iIAHRG~s~~--~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~ 345 (671)
.+|+||||||+++. +||||++||++|++.|||+||+|||+||||++||+||.++++++... ..|. .++.
T Consensus 2 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~---~~~~------~~~~ 72 (265)
T cd08564 2 VRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTS---IQLD------DSGF 72 (265)
T ss_pred CCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCcccc---cccc------CCCc
Confidence 36899999999988 99999999999999999999999999999999999998766522100 0000 0156
Q ss_pred ccccccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHH
Q 005894 346 GIFSFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVD 425 (671)
Q Consensus 346 G~~i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~ 425 (671)
| .|.++|++||++++.+ .||+... +......+++||||+|+|+++++. ++++||||... ..+++
T Consensus 73 ~-~v~~~t~~el~~l~~~--~~~~~~~----~~~~~~~~~~iptL~evl~~~~~~--~~l~iEiK~~~-------~~~~~ 136 (265)
T cd08564 73 K-NINDLSLDEITRLHFK--QLFDEKP----CGADEIKGEKIPTLEDVLVTFKDK--LKYNIELKGRE-------VGLGE 136 (265)
T ss_pred c-chhhCcHHHHhhcccC--cccccCc----ccccccCCccCCCHHHHHHHhccC--cEEEEEeCCCc-------hhHHH
Confidence 7 7999999999999987 3543211 111112458999999999999875 68999999653 25788
Q ss_pred HHHHHHHhcCCCCCCCceEEEEcCCh-HHHHHHhcC-CC---ceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeec
Q 005894 426 AVTKALSNATFDKQSTQQVMIQSDDS-SVLSKFQDV-PA---YKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVIS 500 (671)
Q Consensus 426 ~v~~~l~~~~~~~~~~~~vii~Sfd~-~~L~~lk~~-p~---~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~ 500 (671)
.++++|+++++. ++++|+||++ ++++++++. |+ +++++++...... ...++...+...+. ..+.+
T Consensus 137 ~v~~~l~~~~~~----~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~--~~v~~ 206 (265)
T cd08564 137 RVLNLVEKYGMI----LQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSP----SPLDFLEQAKYYNA--TWVNF 206 (265)
T ss_pred HHHHHHHHcCCC----CCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCc----ccccHHHHHHhcCC--ceeee
Confidence 999999999987 7999999999 999999999 88 9999998543210 11122223333333 23333
Q ss_pred CCCcccccchHHHHHHHHcCCeEEEEe----ccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHH
Q 005894 501 TTESFTTNATNILRDLHSANISVYISA----LRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYF 571 (671)
Q Consensus 501 ~~~~~~~~~~~~V~~~~~~Gl~V~vwt----vn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~ 571 (671)
.. ...++++|+.+|++|+.|++|| +|+++ ++++++ ++||||||||+|+.+.+++
T Consensus 207 ~~---~~~~~~~v~~~~~~Gl~v~~wT~~~~~n~~~-------------~~~~l~-~~GvdgiiTD~p~~~~~~~ 264 (265)
T cd08564 207 SY---DFWTEEFVKKAHENGLKVMTYFDEPVNDNEE-------------DYKVYL-ELGVDCICPNDPVLLVNFL 264 (265)
T ss_pred ch---hhhhHHHHHHHHHcCCEEEEecCCCCCCCHH-------------HHHHHH-HcCCCEEEcCCHHHHHHhh
Confidence 32 2346789999999999999999 55554 788885 9999999999999999876
No 20
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.4e-43 Score=360.87 Aligned_cols=234 Identities=18% Similarity=0.247 Sum_probs=183.0
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|+ ++| .|.+
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~-----------------~~g-~v~~ 62 (235)
T cd08565 1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTH-----------------GTG-AVRD 62 (235)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccC-----------------CCC-ceee
Confidence 6899999999999999999999999999999999999999999999999999999 778 7999
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKAL 431 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l 431 (671)
+||+||++|+.+. +| +++||||+|+|+++++.+ +.++||||..... .....+++++++++
T Consensus 63 ~t~~el~~l~~~~--~~---------------~~~iptL~evl~~~~~~~-~~l~iEiK~~~~~--~~~~~~~~~v~~~i 122 (235)
T cd08565 63 LTLAERKALRLRD--SF---------------GEKIPTLEEVLALFAPSG-LELHVEIKTDADG--TPYPGAAALAAATL 122 (235)
T ss_pred ccHHHHhcCCCCC--CC---------------CCCCCCHHHHHHHhhccC-cEEEEEECCCCCC--CccHHHHHHHHHHH
Confidence 9999999999862 21 478999999999997642 5799999965310 01125788999999
Q ss_pred HhcCCCCCCCceEEEEcCChHHHHHHhcCCCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchH
Q 005894 432 SNATFDKQSTQQVMIQSDDSSVLSKFQDVPAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATN 511 (671)
Q Consensus 432 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~ 511 (671)
+++++. ++++|+||+++.|+++++.|+++++++++........ ..... ..+...+.....+++. +...+..
T Consensus 123 ~~~~~~----~~v~~~Sf~~~~l~~~~~~p~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~ 193 (235)
T cd08565 123 RRHGLL----ERSVLTSFDPAVLTEVRKHPGVRTLGSVDEDMLERLG-GELPF-LTATALKAHIVAVEQS---LLAATWE 193 (235)
T ss_pred HhCCCc----CCEEEEECCHHHHHHHHhCCCCcEEEEeccccccccc-cccch-hhhhhccCcEEccCcc---cccCCHH
Confidence 999987 7999999999999999988999999987532111000 00000 0111122111122221 1234578
Q ss_pred HHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhH
Q 005894 512 ILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATA 567 (671)
Q Consensus 512 ~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~ 567 (671)
+|+++| +|+.|++||+|++. ++.+++ ++||||||||+|+.+
T Consensus 194 ~v~~~~-~g~~v~~WTVn~~~-------------~~~~l~-~~GVdgIiTD~P~~~ 234 (235)
T cd08565 194 LVRAAV-PGLRLGVWTVNDDS-------------LIRYWL-ACGVRQLTTDRPDLA 234 (235)
T ss_pred HHHHHh-CCCEEEEEccCCHH-------------HHHHHH-HcCCCEEEeCCcccc
Confidence 899987 49999999999987 899885 999999999999864
No 21
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=2.4e-43 Score=370.87 Aligned_cols=254 Identities=18% Similarity=0.229 Sum_probs=190.9
Q ss_pred CCceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccc
Q 005894 268 DRPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGI 347 (671)
Q Consensus 268 ~~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~ 347 (671)
.+|+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+||....|+.+ ..|
T Consensus 21 ~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~~~~~---------~~~- 90 (316)
T cd08610 21 PKPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGEVQPES---------ACE- 90 (316)
T ss_pred CCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCCccccc---------ccc-
Confidence 4789999999999999999999999999999999999999999999999999999999954444444 234
Q ss_pred ccccCCHHHHhccCCCcCCCCCCCC-C----CCCCC--cccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcC
Q 005894 348 FSFDLTWTEIQSLKPQISSPFDKSN-P----PIIRN--PEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKG 420 (671)
Q Consensus 348 ~i~dlT~~EL~~L~~~~~~~f~~~~-~----~~~r~--~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~ 420 (671)
.+.++||+||++++++ .||+... + +.+.. ..+ .+++||||+|+|+++++.+ ..++||||....... ..
T Consensus 91 ~V~~~TlaEL~~ld~g--~wf~~~~~~~~~~~~~~~~~~~~-~~e~IPTLeEvL~~~~~~~-~~l~IEIK~~~~~~~-~~ 165 (316)
T cd08610 91 NPAFFNWDFLSTLNAG--KWFVKPRPFYNMKPLSEADKERA-RNQSIPKLSNFLRLAEKEN-KLVIFDLYRPPPKHP-YR 165 (316)
T ss_pred chhhCCHHHHhhCCCC--CccCccccccccccccccccccc-CCCCCCCHHHHHHHhHhcC-ceEEEEeCCCcccCc-ch
Confidence 6899999999999988 5664210 0 00000 112 3589999999999998743 479999996421100 01
Q ss_pred CcHHHHHHHHH-HhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceee
Q 005894 421 LGVVDAVTKAL-SNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSV 498 (671)
Q Consensus 421 ~~~~~~v~~~l-~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v 498 (671)
..+++.+++++ +++++. +++++ ||+...++.+++. |++++++.... .+..+ ...+. ..+
T Consensus 166 ~~~~~~v~~~i~~~~~~~----~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~--------~~~~l----~~~~~--~~l 226 (316)
T cd08610 166 HTWIRRVLEVILNEVGIE----QHLVL-WLPAHDRQYVQSVAPGFKQHVGRKV--------PIETL----LKNNI--SIL 226 (316)
T ss_pred hHHHHHHHHHHHHHcCCC----CCEEE-EcCHHHHHHHHHHCcchhhhhcccc--------cHHHH----HHcCC--eEE
Confidence 13667787776 677887 56666 5889999999999 99876543211 11111 12222 345
Q ss_pred ecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHHH
Q 005894 499 ISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYFR 572 (671)
Q Consensus 499 ~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~~ 572 (671)
++.+ ...++++|+++|++|++|++||+|++. ++.+++ ++||||||||+|+.+.++.+
T Consensus 227 ~~~~---~~l~~~~v~~a~~~Gl~V~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~~ 283 (316)
T cd08610 227 NLAY---KKLFSNDIRDYKAANIHTNVYVINEPW-------------LFSLAW-CSGIHSVTTNNIHLLKQLDH 283 (316)
T ss_pred ccch---hhCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hCCcCEEEeCCHHHHHHhhc
Confidence 5543 344679999999999999999999997 898885 99999999999999977554
No 22
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=3.8e-43 Score=354.84 Aligned_cols=219 Identities=22% Similarity=0.314 Sum_probs=183.5
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ ++| .|.+
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~-----------------~~~-~v~~ 62 (220)
T cd08579 1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAG-----------------VNK-KVWD 62 (220)
T ss_pred CeeccCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccC-----------------CCC-Chhh
Confidence 6899999999999999999999999999999999999999999999999999999 667 7999
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKAL 431 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l 431 (671)
+||+||++++.+. ++ .+++||||+|+|+++++++ ++++||||.... ....+++.+++++
T Consensus 63 ~t~~el~~l~~~~--~~--------------~~~~iptL~evl~~~~~~~-~~l~iEiK~~~~----~~~~~~~~v~~~l 121 (220)
T cd08579 63 LTLEELKKLTIGE--NG--------------HGAKIPSLDEYLALAKGLK-QKLLIELKPHGH----DSPDLVEKFVKLY 121 (220)
T ss_pred CCHHHHhcCcCcc--CC--------------CCCcCCCHHHHHHHhhccC-CeEEEEECCCCC----CCHHHHHHHHHHH
Confidence 9999999999862 11 2478999999999998742 589999998642 2235788999999
Q ss_pred HhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccch
Q 005894 432 SNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNAT 510 (671)
Q Consensus 432 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~ 510 (671)
+++++. ++++|+||+++.++.+++. |++++++++.....+. . ..++ ..+... +...++
T Consensus 122 ~~~~~~----~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~--------~----~~~~--~~~~~~---~~~~~~ 180 (220)
T cd08579 122 KQNLIE----NQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNL--------P----KTNV--DFYSIE---YSTLNK 180 (220)
T ss_pred HHcCCC----cCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcc--------c----ccCc--eEEeee---hhhcCH
Confidence 999987 6999999999999999998 9999999885433211 0 0111 112221 133467
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECCh
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P 564 (671)
++++.+|++|++|++||+|++. ++.+++ ++|||||+||+|
T Consensus 181 ~~v~~~~~~G~~v~~wtvn~~~-------------~~~~~~-~~Gvd~i~TD~P 220 (220)
T cd08579 181 EFIRQAHQNGKKVYVWTVNDPD-------------DMQRYL-AMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHHCCCEEEEEcCCCHH-------------HHHHHH-HcCCCEEeCCCC
Confidence 8999999999999999999987 888885 999999999998
No 23
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=7e-43 Score=371.03 Aligned_cols=252 Identities=21% Similarity=0.270 Sum_probs=187.7
Q ss_pred CceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccc
Q 005894 269 RPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIF 348 (671)
Q Consensus 269 ~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~ 348 (671)
+|+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+||||....++++.. ..
T Consensus 1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~v~~~~~----------~~ 70 (351)
T cd08608 1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDRVFPERQY----------ED 70 (351)
T ss_pred CCeEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCCccccccc----------cc
Confidence 57899999999999999999999999999999999999999999999999999999994332222211 13
Q ss_pred cccCCHHHHhccCCCcCCCCCCCCCCCC------C-C-cccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcC
Q 005894 349 SFDLTWTEIQSLKPQISSPFDKSNPPII------R-N-PEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKG 420 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~~~f~~~~~~~~------r-~-~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~ 420 (671)
+.++||+||++|+++ .||.... |.+ + . ..+ .+++||||+|+|+++++.+ .+++||||.+.... ...
T Consensus 71 ~~~~TlaEL~~LdaG--~wf~~~~-p~~~~~~~~~~~~~~~-~ge~IPTL~EvL~~~~~~~-~~l~iEIK~~~~~~-~~~ 144 (351)
T cd08608 71 ASMFNWTDLERLNAG--QWFLKDD-PFWTAQSLSPSDRKEA-GNQSVCSLAELLELAKRYN-ASVLLNLRRPPPNH-PYH 144 (351)
T ss_pred cccCCHHHHhhCCCC--cccccCC-cccccccccccccccc-CCCCCCCHHHHHHHHHhcC-CeEEEEECCCcccC-cch
Confidence 578999999999998 3543110 000 0 0 122 3689999999999998743 46999999653110 011
Q ss_pred CcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeee
Q 005894 421 LGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVI 499 (671)
Q Consensus 421 ~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~ 499 (671)
..+++.+++++.++++.. ++++++||+. ++.+|+. |++++.... ..... .+...+. ..++
T Consensus 145 ~~~~~~v~~~i~~~~~~~---~~vi~sSf~~--~~~vr~l~P~~~~~~~~--------~~~~~----~~~~~~~--~~l~ 205 (351)
T cd08608 145 QSWINLTLKTILASGIPQ---EQVMWTPDWQ--RKLVRKVAPGFQQTSGE--------KLPVA----SLRERGI--TRLN 205 (351)
T ss_pred hHHHHHHHHHHHHhCCCc---CeEEEEcchH--HHHHHHHCCCCeeeccc--------cchHH----HHHHcCC--eEEc
Confidence 256788899999998753 5888889876 4789998 998864211 01111 1222333 3455
Q ss_pred cCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHHH
Q 005894 500 STTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYFR 572 (671)
Q Consensus 500 ~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~~ 572 (671)
+.. ...++++|+++|++|++|++||||++. ++.+++ ++||||||||+|+.+.+...
T Consensus 206 ~~~---~~lt~~~v~~~~~~Gl~V~vWTVN~~~-------------~~~~l~-~~GVdgIiTD~P~~l~~l~~ 261 (351)
T cd08608 206 LRY---TQASAQEIRDYSASNLSVNLYTVNEPW-------------LYSLLW-CSGVPSVTSDASHVLRKVPF 261 (351)
T ss_pred cch---hhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEECCHHHHHHhhh
Confidence 543 345689999999999999999999997 888885 99999999999999987653
No 24
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1e-42 Score=354.75 Aligned_cols=230 Identities=22% Similarity=0.321 Sum_probs=186.2
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ +.| .|.+
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~-----------------~~~-~i~~ 62 (233)
T cd08582 1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSG-----------------GDG-AVSD 62 (233)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccC-----------------CCc-chhh
Confidence 6899999999999999999999999999999999999999999999999999999 677 7999
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKAL 431 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l 431 (671)
+||+||++++.+ .++. ..+ .+++||||+|+|+++++.+ +.++||||... .+..+++.+++++
T Consensus 63 ~t~~el~~l~~~--~~~~---------~~~-~~~~iptL~evl~~~~~~~-~~l~ieiK~~~-----~~~~~~~~~~~~~ 124 (233)
T cd08582 63 LTLAELRKLDIG--SWKG---------ESY-KGEKVPTLEEYLAIVPKYG-KKLFIEIKHPR-----RGPEAEEELLKLL 124 (233)
T ss_pred CCHHHHhcCCCC--cccC---------CCC-CCCcCCCHHHHHHHHHhcC-ceEEEEeCCCc-----cCccHHHHHHHHH
Confidence 999999999986 2222 122 3589999999999998843 58999999751 2236889999999
Q ss_pred HhcC-CCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCccc-cc
Q 005894 432 SNAT-FDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFT-TN 508 (671)
Q Consensus 432 ~~~~-~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~-~~ 508 (671)
++++ .. ++++++||++..++.+++. |+++++++.......... ..++..... ..+.+.. . ..
T Consensus 125 ~~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~------~~~~~~~~~--~~i~~~~---~~~~ 189 (233)
T cd08582 125 KESGLLP----EQIVIISFDAEALKRVRELAPTLETLWLRNYKSPKEDP------RPLAKSGGA--AGLDLSY---EKKL 189 (233)
T ss_pred HHcCCCC----CCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccccch------hHHHHhhCc--eEEcccc---cccC
Confidence 9995 44 6999999999999999999 999999987543211000 011122222 2233321 2 25
Q ss_pred chHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhh
Q 005894 509 ATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPAT 566 (671)
Q Consensus 509 ~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~ 566 (671)
.+++++.+|++|++|++||+|+.. ++.+++ ++||||||||+|+.
T Consensus 190 ~~~~v~~~~~~G~~v~~wTvn~~~-------------~~~~l~-~~GVdgi~TD~p~~ 233 (233)
T cd08582 190 NPAFIKALRDAGLKLNVWTVDDAE-------------DAKRLI-ELGVDSITTNRPGR 233 (233)
T ss_pred CHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HCCCCEEEcCCCCC
Confidence 679999999999999999999997 899985 99999999999973
No 25
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=1.2e-42 Score=358.68 Aligned_cols=232 Identities=19% Similarity=0.253 Sum_probs=184.2
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+ ++| .|.+
T Consensus 1 iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~-----------------~~g-~v~~ 62 (258)
T cd08573 1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTD-----------------GTG-LVAE 62 (258)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecC-----------------CCc-eEec
Confidence 6899999999999999999999999999999999999999999999999999999 678 7999
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKAL 431 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l 431 (671)
+||+||++|+.+...+++ +.+ .+++||||+|+|+++++.+ ..++||||.... .+++++++++
T Consensus 63 ~t~~el~~l~~~~~~~~~---------~~~-~~~~iptL~evl~~~~~~~-~~l~iEiK~~~~-------~~~~~v~~~l 124 (258)
T cd08573 63 LTWEELRKLNAAAKHRLS---------SRF-PGEKIPTLEEAVKECLENN-LRMIFDVKSNSS-------KLVDALKNLF 124 (258)
T ss_pred CcHHHHhhCCCCCCCCCc---------ccc-CCCCCCCHHHHHHHHHhcC-CEEEEEeCCCcH-------HHHHHHHHHH
Confidence 999999999987322111 122 3589999999999998643 479999997532 5778999999
Q ss_pred HhcC-CCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCC-----hh----H-------HHHHHHH------
Q 005894 432 SNAT-FDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAP-----RE----V-------VEEIKKY------ 487 (671)
Q Consensus 432 ~~~~-~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~-----~~----~-------l~~i~~~------ 487 (671)
++++ +. ++++++||++.+|+++++. |+++++++++....... .. . +..+..+
T Consensus 125 ~~~~~~~----~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (258)
T cd08573 125 KKYPGLY----DKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWL 200 (258)
T ss_pred HHCCCcc----CCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 9998 76 7999999999999999999 99999998753211000 00 0 0001111
Q ss_pred HHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhh-cCccEEEECC
Q 005894 488 ASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQG-VGVDGITTEF 563 (671)
Q Consensus 488 a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~-~GVDgIiTD~ 563 (671)
+...++ ..+.+.. ...++++|+++|++|++|++||+|++. ++++++ + +||| ||||+
T Consensus 201 ~~~~~~--~~v~~~~---~~~~~~~v~~~~~~G~~v~vWTVn~~~-------------~~~~l~-~~~GVd-iiTD~ 257 (258)
T cd08573 201 PYFLGV--SALLIHK---DDISSAYVRYWRARGIRVIAWTVNTPT-------------EKQYFA-KTLNVP-YITDS 257 (258)
T ss_pred hhhcCe--eEEEech---HhcCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HHhCCC-eecCC
Confidence 011222 3444432 345789999999999999999999998 899885 8 9999 99997
No 26
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=2.4e-42 Score=363.53 Aligned_cols=251 Identities=18% Similarity=0.245 Sum_probs=187.6
Q ss_pred CceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccc
Q 005894 269 RPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIF 348 (671)
Q Consensus 269 ~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~ 348 (671)
.|+||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+||....++.+. ...
T Consensus 26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~~~~~~----------~~~ 95 (315)
T cd08609 26 KPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKDVFPGRD----------AAG 95 (315)
T ss_pred CCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCCCccccc----------ccc
Confidence 4789999999999999999999999999999999999999999999999999999999321111000 014
Q ss_pred cccCCHHHHhccCCCcCCCCCCCCCCCCC-----C---cccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcC
Q 005894 349 SFDLTWTEIQSLKPQISSPFDKSNPPIIR-----N---PEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKG 420 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~~~f~~~~~~~~r-----~---~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~ 420 (671)
|.++||+||++|+++ .||+... +.++ + ..+ .+++||||+|+|+++++.+ ..++||||...... ...
T Consensus 96 V~dlTlaEL~~ld~g--~wf~~~~-~~~~~~~~~~~~~~~~-~ge~IPTL~EvL~~~~~~~-~~l~IEIK~~~~~~-~~~ 169 (315)
T cd08609 96 SNNFTWTELKTLNAG--SWFLERR-PFWTLSSLSEEDRREA-DNQTVPSLSELLDLAKKHN-VSIMFDLRNENNSH-VFY 169 (315)
T ss_pred HhhCCHHHHhhCCCC--cccCccc-cccccccccccccccc-CCCCCCCHHHHHHHHHhcC-CEEEEEeCCCCCCC-ccH
Confidence 899999999999998 4554210 0000 0 012 3689999999999998743 46999999752100 011
Q ss_pred CcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeee
Q 005894 421 LGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVI 499 (671)
Q Consensus 421 ~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~ 499 (671)
..+.+.++++++++++.. +++++ ++...++.+++. |++++++.... . .. ..+. ..++
T Consensus 170 ~~f~~~vl~~i~~~~~~~---~~v~~--~~~~~l~~~~~~~P~~~~~~~~~~--------~---~~----~~~~--~~i~ 227 (315)
T cd08609 170 SSFVFYTLETILKLGIPP---DKVWW--LPDEYRHDVMKMEPGFKQVYGRQK--------E---ML----MDGG--NFMN 227 (315)
T ss_pred HHHHHHHHHHHHHcCCCc---ceEEE--eCHHHHHHHHHhCcCceeecccch--------h---hH----hcCC--eEEe
Confidence 257788999999998763 35543 468899999999 99998653210 0 00 0111 2344
Q ss_pred cCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHHHhc
Q 005894 500 STTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYFRSK 574 (671)
Q Consensus 500 ~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~~~~ 574 (671)
+.. ...++++|+++|++|++|++||+|++. ++++++ ++||||||||+|+.+.+.++..
T Consensus 228 ~~~---~~l~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVDgIiTD~P~~l~~~~~~~ 285 (315)
T cd08609 228 LPY---QDLSALEIKELRKDNVSVNLWVVNEPW-------------LFSLLW-CSGVSSVTTNACQLLKDMSKPI 285 (315)
T ss_pred ccc---ccCCHHHHHHHHHCCCEEEEECCCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHHhhhhh
Confidence 432 334678999999999999999999997 899985 9999999999999999887654
No 27
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=3e-43 Score=364.75 Aligned_cols=243 Identities=21% Similarity=0.315 Sum_probs=184.3
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccc
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFS 349 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i 349 (671)
|+||||||+++.+||||++||++|++.|||+||+|||+||||++||+||.+|+|+|+ ++| .|
T Consensus 1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~-----------------~~~-~v 62 (264)
T cd08575 1 PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTG-----------------GSG-LV 62 (264)
T ss_pred CeEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeC-----------------Cce-EE
Confidence 789999999999999999999999999999999999999999999999999999999 677 89
Q ss_pred ccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHH
Q 005894 350 FDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTK 429 (671)
Q Consensus 350 ~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~ 429 (671)
.++|++||++++++. +|..... ....+....+++||||+|+|+.+++ ..++||||.... ..+++.+++
T Consensus 63 ~~~t~~el~~l~~~~--~~~~~~~-~~~~~~~~~~~~iptL~evl~~~~~---~~l~iEiK~~~~------~~~~~~v~~ 130 (264)
T cd08575 63 SDLTYAELPPLDAGY--GYTFDGG-KTGYPRGGGDGRIPTLEEVFKAFPD---TPINIDIKSPDA------EELIAAVLD 130 (264)
T ss_pred ecCCHHHHHhcccCC--ccccCCC-CcccccCCCCCcCCcHHHHHHhCCC---CeEEEEECCCCH------HHHHHHHHH
Confidence 999999999999873 3321000 0001111235799999999999976 379999997542 257889999
Q ss_pred HHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeeccc---------CCCChhHHHHHHHHHHHhcCCc----
Q 005894 430 ALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEV---------SAAPREVVEEIKKYASAVTVTR---- 495 (671)
Q Consensus 430 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~---------~d~~~~~l~~i~~~a~~v~~~~---- 495 (671)
+++++++. ++++++||++++|+++++. |+++++++..... ........ +..+-.+.+..
T Consensus 131 ~i~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 203 (264)
T cd08575 131 LLEKYKRE----DRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPI---KESFFEIPRPVIVLE 203 (264)
T ss_pred HHHhcccc----ceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCC---CceEEEeecccEEEE
Confidence 99999987 7999999999999999999 9877665542110 00000000 00000000000
Q ss_pred ------eeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhh
Q 005894 496 ------TSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPAT 566 (671)
Q Consensus 496 ------~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~ 566 (671)
..+.+ .+...++++|+++|++|++|++||+|++. +|.+++ ++||||||||+|+.
T Consensus 204 ~~~~~~~~~~~---~~~~~~~~~v~~~~~~G~~v~vWTVNd~~-------------~~~~l~-~~GVdgIiTD~P~~ 263 (264)
T cd08575 204 TFTLGEGASIV---AALLWWPNLFDHLRKRGIQVYLWVLNDEE-------------DFEEAF-DLGADGVMTDSPTK 263 (264)
T ss_pred Eeccccccchh---hhhhcCHHHHHHHHhcCCcEEEEEECCHH-------------HHHHHH-hcCCCEEEeCCccc
Confidence 00111 12345789999999999999999999998 899885 99999999999985
No 28
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=3.7e-42 Score=361.20 Aligned_cols=257 Identities=14% Similarity=0.158 Sum_probs=192.5
Q ss_pred ceEEeccCCCCCCC--------chhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccc
Q 005894 270 PLIITHNGASGVYA--------GCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEI 341 (671)
Q Consensus 270 p~iIAHRG~s~~~P--------ENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~ 341 (671)
++||||||+++.+| |||++||+.|++.|||+||+|||+||||++||+||.+|+|+ +
T Consensus 2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~--------------- 65 (286)
T cd08606 2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-G--------------- 65 (286)
T ss_pred ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-C---------------
Confidence 68999999999999 99999999999999999999999999999999999999985 5
Q ss_pred ccccccccccCCHHHHhccCCCcC-CCCCCCCCCCCCCccccc---CCcccCHHHHHHHHhccCcccEEEEecCchhhhh
Q 005894 342 QKERGIFSFDLTWTEIQSLKPQIS-SPFDKSNPPIIRNPEAKN---KGKFVTLDGFLEFAKTKAVSGVLININNAAYLAS 417 (671)
Q Consensus 342 ~~~~G~~i~dlT~~EL~~L~~~~~-~~f~~~~~~~~r~~~~~~---~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~ 417 (671)
++| .|.++||+||++|+.... .+|... .++ ..+.+ +++||||+|+|+.++.. ++++||||.+.....
T Consensus 66 --~~~-~v~~lt~~eL~~ld~~~~~~~~~~~---~~~-~~~~g~~~~~~iptL~evl~~~~~~--~~l~IEiK~~~~~~~ 136 (286)
T cd08606 66 --TDV-PIHDLTLEQFLHLSRMKYTVDFKKK---GFK-GNSRGHSIQAPFTTLEELLKKLPKS--VGFNIELKYPMLHEA 136 (286)
T ss_pred --CCC-ccccCCHHHHHhhhccccccccccc---CCC-CcccccccccCCCcHHHHHHhCCCc--cceEEEEecCCcchh
Confidence 566 799999999999974311 111100 000 00111 24699999999999764 589999997542110
Q ss_pred hc---------CCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCC---CChhHHHHH
Q 005894 418 KK---------GLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSA---APREVVEEI 484 (671)
Q Consensus 418 ~~---------~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d---~~~~~l~~i 484 (671)
.. ...+++.++++++++++. ++++|+||++++|+.++++ |.+++++++...... .....+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 212 (286)
T cd08606 137 EEEEVAPVAIELNAFVDTVLEKVFDYGAG----RNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEA 212 (286)
T ss_pred hhcccccchhHHHHHHHHHHHHHHhcCCC----CceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHH
Confidence 00 014667899999999987 7999999999999999999 999999997542211 111122223
Q ss_pred HHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEec--cCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 485 KKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISAL--RNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 485 ~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtv--n~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
..++...+. ..+.+.. .+...++.+|+.+|++|+.|++||+ |++. ++.+++ ++||||||||
T Consensus 213 ~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~~~-------------~~~~l~-~~GVdgIiTD 275 (286)
T cd08606 213 IRFAKQWNL--LGLVSAA-EPLVMCPRLIQVVKRSGLVCVSYGVLNNDPE-------------NAKTQV-KAGVDAVIVD 275 (286)
T ss_pred HHHHHHCCC--eEEEech-HHhhhChHHHHHHHHCCcEEEEECCccCCHH-------------HHHHHH-HcCCCEEEEC
Confidence 345555544 2232211 1234467999999999999999999 7776 788885 9999999999
Q ss_pred ChhhHHHHHH
Q 005894 563 FPATASKYFR 572 (671)
Q Consensus 563 ~P~~~~~~~~ 572 (671)
+|+.+.+.+.
T Consensus 276 ~p~~~~~~~~ 285 (286)
T cd08606 276 SVLAIRRGLT 285 (286)
T ss_pred CHHHHHHHhc
Confidence 9999988753
No 29
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=3e-42 Score=361.85 Aligned_cols=263 Identities=17% Similarity=0.189 Sum_probs=193.6
Q ss_pred eEEeccCCC--------CCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccc
Q 005894 271 LIITHNGAS--------GVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQ 342 (671)
Q Consensus 271 ~iIAHRG~s--------~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~ 342 (671)
+||||||++ +.+||||++||+.|++.|||+||+|||+||||++||+||.+|+|+|+.++.+ ...
T Consensus 1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~--------~~~ 72 (293)
T cd08572 1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTGS--------DEG 72 (293)
T ss_pred CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeeccccccc--------ccC
Confidence 589999997 7999999999999999999999999999999999999999999999843321 111
Q ss_pred cccccccccCCHHHHhccCCCcCCC-CCCCC---CCCCCCc--ccccCCcccCHHHHHHHHhccCcccEEEEecCchhhh
Q 005894 343 KERGIFSFDLTWTEIQSLKPQISSP-FDKSN---PPIIRNP--EAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLA 416 (671)
Q Consensus 343 ~~~G~~i~dlT~~EL~~L~~~~~~~-f~~~~---~~~~r~~--~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~ 416 (671)
.+.+..|.++||+||++|+.+.... +.... ....+.+ ....+++||||+|+|+++++. .+++||||.+....
T Consensus 73 ~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~--~~l~IEiK~~~~~~ 150 (293)
T cd08572 73 ELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKD--LGFNIEIKYPQLLE 150 (293)
T ss_pred cceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCCc--cceEEEEecCCccc
Confidence 1333489999999999999873211 11000 0000000 011357899999999999864 58999999754321
Q ss_pred hh--------cCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccC-----CCChhHHH
Q 005894 417 SK--------KGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVS-----AAPREVVE 482 (671)
Q Consensus 417 ~~--------~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~-----d~~~~~l~ 482 (671)
.. ....+++.++++++++++. ++|+++||++++|+.+++. |.+++++++..... +.....+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~vl~~i~~~~~~----~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 226 (293)
T cd08572 151 DGEGELTPYFERNAFVDTILAVVFEHAGG----RRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRRSLQ 226 (293)
T ss_pred cccccccchHHHHHHHHHHHHHHHHhCCC----CcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhhhHH
Confidence 00 0124788999999999987 7999999999999999999 99999999864322 11122344
Q ss_pred HHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEec--cCcccccccccCCChHHHHHHHHhhcCccEEE
Q 005894 483 EIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISAL--RNEYLSIAFDYLADPLIEVATFAQGVGVDGIT 560 (671)
Q Consensus 483 ~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtv--n~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIi 560 (671)
.+.+++...+.. .+.+.. .+...++++|+.+|++|+.|++||+ |++. ++.++ .++||||||
T Consensus 227 ~~~~~~~~~~~~--~~~~~~-~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~-------------~~~~l-~~~GVdgIi 289 (293)
T cd08572 227 AAVNFALAEGLL--GVVLHA-EDLLKNPSLISLVKALGLVLFTYGDDNNDPE-------------NVKKQ-KELGVDGVI 289 (293)
T ss_pred HHHHHHHHCCCe--EEEech-HHhhcCcHHHHHHHHcCcEEEEECCCCCCHH-------------HHHHH-HHcCCCEEE
Confidence 455666555542 233322 1233467999999999999999999 6655 77777 599999999
Q ss_pred ECCh
Q 005894 561 TEFP 564 (671)
Q Consensus 561 TD~P 564 (671)
||+|
T Consensus 290 TD~~ 293 (293)
T cd08572 290 YDRV 293 (293)
T ss_pred ecCC
Confidence 9986
No 30
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=4.6e-42 Score=356.23 Aligned_cols=253 Identities=21% Similarity=0.253 Sum_probs=188.6
Q ss_pred eEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCc--ccccccccccccccccccccc
Q 005894 271 LIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTA--ATVFMSKATSVPEIQKERGIF 348 (671)
Q Consensus 271 ~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~--~~~f~~r~~~~~~~~~~~G~~ 348 (671)
.||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|+|+|+. ...|.. ...| .
T Consensus 2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~~---------~~~~-~ 71 (263)
T cd08567 2 DLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWLP---------YEGP-A 71 (263)
T ss_pred ceEeccCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCccc---------ccCc-c
Confidence 589999999999999999999999999999999999999999999999999987631 000000 0125 8
Q ss_pred cccCCHHHHhccCCCcCCCCCCCCCCCCCCccc--ccCCcccCHHHHHHHHhccC--cccEEEEecCchhhhh--hcCCc
Q 005894 349 SFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEA--KNKGKFVTLDGFLEFAKTKA--VSGVLININNAAYLAS--KKGLG 422 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~--~~~~~ipTLeEvL~~~~~~~--~~~i~IeIK~~~~~~~--~~~~~ 422 (671)
|+++||+||++|+.+. ++..... ..+.+.. ..+++||||+|+|+++++.+ .++++||||....... ..+..
T Consensus 72 v~~~t~~el~~l~~~~--~~~~~~~-~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 148 (263)
T cd08567 72 LYELTLAEIKQLDVGE--KRPGSDY-AKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEE 148 (263)
T ss_pred hhcCCHHHHHhcCCCc--cccCcCc-ccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHH
Confidence 9999999999999873 2210000 0011110 12478999999999998741 2589999997542100 01235
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecC
Q 005894 423 VVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVIST 501 (671)
Q Consensus 423 ~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~ 501 (671)
+++.++++++++++. ++|+|+||+++.++.++++ |++++++++..... .. +...+...++ ..+.+.
T Consensus 149 ~~~~v~~~l~~~~~~----~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~----~~---~~~~~~~~~~--~~~~~~ 215 (263)
T cd08567 149 FVDAVLAVIRKAGLE----DRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL----GN---LPRAAKKLGA--DIWSPY 215 (263)
T ss_pred HHHHHHHHHHHcCCC----CceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc----cC---HHHHHHHhCC--cEEecc
Confidence 789999999999987 7999999999999999999 99999998854320 01 1122233333 334433
Q ss_pred CCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhh
Q 005894 502 TESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPAT 566 (671)
Q Consensus 502 ~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~ 566 (671)
. ...++++++++|++|+.|++||+|+.. ++.+++ ++||||||||+|+.
T Consensus 216 ~---~~~~~~~i~~~~~~G~~v~vwtvn~~~-------------~~~~~~-~~Gvdgi~TD~P~~ 263 (263)
T cd08567 216 F---TLVTKELVDEAHALGLKVVPWTVNDPE-------------DMARLI-DLGVDGIITDYPDL 263 (263)
T ss_pred h---hhcCHHHHHHHHHCCCEEEEecCCCHH-------------HHHHHH-HcCCCEEEcCCCCC
Confidence 2 345679999999999999999999886 788875 99999999999973
No 31
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=5.5e-42 Score=359.15 Aligned_cols=252 Identities=17% Similarity=0.185 Sum_probs=186.3
Q ss_pred EEeccCCCC-----------CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccc
Q 005894 272 IITHNGASG-----------VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPE 340 (671)
Q Consensus 272 iIAHRG~s~-----------~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~ 340 (671)
||||||+.. .+||||++||++|++.|||+||+|||+||||++||+||.+|+|+++..
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~------------ 69 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGE------------ 69 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCC------------
Confidence 799999764 356999999999999999999999999999999999999999998810
Q ss_pred cccccccccccCCHHHHhccCCCcCCC---------CCCCCCCCCCCcc-cccCCcccCHHHHHHHHhccCcccEEEEec
Q 005894 341 IQKERGIFSFDLTWTEIQSLKPQISSP---------FDKSNPPIIRNPE-AKNKGKFVTLDGFLEFAKTKAVSGVLININ 410 (671)
Q Consensus 341 ~~~~~G~~i~dlT~~EL~~L~~~~~~~---------f~~~~~~~~r~~~-~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK 410 (671)
...| .|.++||+||++|+++.... |.... ...+. ...+++||||+|+|+++++. ++++||||
T Consensus 70 --~~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~iPtL~evl~~~~~~--~~l~IEiK 141 (282)
T cd08605 70 --VESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDP---EPEPWIMDVEDSIPTLEEVFSEVPPS--LGFNIELK 141 (282)
T ss_pred --cCcc-chhhCcHHHHHhccccccccccCcchhhcccccc---ccccccccccCCCCCHHHHHHhCCCC--ccEEEEEe
Confidence 0156 79999999999999873221 11000 00000 01257999999999999764 58999999
Q ss_pred Cchhhhh--hcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeeccc---CCCChhHHHHH
Q 005894 411 NAAYLAS--KKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEV---SAAPREVVEEI 484 (671)
Q Consensus 411 ~~~~~~~--~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~---~d~~~~~l~~i 484 (671)
.+..... ..-..++++++++++++++. ++|+|+|||+++|+.++++ |.+++++++.... .+.....+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~----~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~ 217 (282)
T cd08605 142 FGDDNKTEAEELVRELRAILAVCKQHAPG----RRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAA 217 (282)
T ss_pred cCccccchHHHHHHHHHHHHHHHHhcCCC----CeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHH
Confidence 6532100 00012357788889999887 7999999999999999999 9999999985432 12112223333
Q ss_pred HHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEec--cCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 485 KKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISAL--RNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 485 ~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtv--n~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
..++..++. ..+++.. .++..++++|+++|++|+.|++||+ |++. +|.+++ ++||||||||
T Consensus 218 ~~~~~~~~~--~~~~~~~-~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~~~-------------~~~~l~-~~GVdgIiTD 280 (282)
T cd08605 218 IQVALEGGL--QGIVSEV-KVLLRNPTAVSLVKASGLELGTYGKLNNDAE-------------AVERQA-DLGVDGVIVD 280 (282)
T ss_pred HHHHHHcCC--ceEEecH-HHhhcCcHHHHHHHHcCcEEEEeCCCCCCHH-------------HHHHHH-HcCCCEEEeC
Confidence 445555544 3344432 1123468999999999999999999 8876 888885 9999999999
Q ss_pred Ch
Q 005894 563 FP 564 (671)
Q Consensus 563 ~P 564 (671)
++
T Consensus 281 ~~ 282 (282)
T cd08605 281 HV 282 (282)
T ss_pred CC
Confidence 86
No 32
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=5.5e-42 Score=360.69 Aligned_cols=263 Identities=17% Similarity=0.153 Sum_probs=187.9
Q ss_pred eEEeccCCC-------CCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccc
Q 005894 271 LIITHNGAS-------GVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQK 343 (671)
Q Consensus 271 ~iIAHRG~s-------~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~ 343 (671)
+.|||||++ +.+||||++||+.|++.|||+||||||+||||++||+||.+|+|+|+.....+ ...
T Consensus 1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~~--------~~~ 72 (290)
T cd08607 1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDSD--------RDD 72 (290)
T ss_pred CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccccC--------ccc
Confidence 478999994 89999999999999999999999999999999999999999999988321100 000
Q ss_pred ccccccccCCHHHHhccCCCcC-CCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhh----
Q 005894 344 ERGIFSFDLTWTEIQSLKPQIS-SPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASK---- 418 (671)
Q Consensus 344 ~~G~~i~dlT~~EL~~L~~~~~-~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~---- 418 (671)
+.+..|.++||+||++|+++.. .||+.......++.....+++||||+|+|+++++. ++++||||.+......
T Consensus 73 ~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~--~~lnIEiK~~~~~~~~~~~~ 150 (290)
T cd08607 73 LLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPED--VGFNIEIKWPQQQKDGSWES 150 (290)
T ss_pred eEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCCc--cceEEEEecCcccccccccc
Confidence 1123799999999999998632 22321100000111111257899999999999874 6899999975321100
Q ss_pred ------cCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccC------CCChhHHHHHH
Q 005894 419 ------KGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVS------AAPREVVEEIK 485 (671)
Q Consensus 419 ------~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~------d~~~~~l~~i~ 485 (671)
....+++.+++++.+++.. ++|+|+||++++|..++++ |.+++++++..... +.....+....
T Consensus 151 ~~~~~~~~~~~~~~v~~~i~~~~~~----~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (290)
T cd08607 151 ELFTYFDRNLFVDIILKIVLEHAGK----RRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLRTRTFEIAV 226 (290)
T ss_pred ccccccchhHHHHHHHHHHHHhCCC----CCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCCccccccchHHHhHHHHH
Confidence 0013678899999988876 6999999999999999999 99999998754311 11111122233
Q ss_pred HHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEec--cCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 486 KYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISAL--RNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 486 ~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtv--n~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
.++...+.....+.+ .+...++++|+.+|++|+.|++||+ |+++ ++.++ .++||||||||+
T Consensus 227 ~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~-------------~~~~l-~~~GVdgIiTD~ 289 (290)
T cd08607 227 NFAQAEELLGVNLHS---EDLLKDPSQIELAKSLGLVVFCWGDDLNDPE-------------NRKKL-KELGVDGLIYDR 289 (290)
T ss_pred HHHHHcCCceeEech---hhhhcChHHHHHHHHcCCEEEEECCCCCCHH-------------HHHHH-HHcCCCEEEecC
Confidence 444444332112222 2244578999999999999999999 7776 78887 599999999998
Q ss_pred h
Q 005894 564 P 564 (671)
Q Consensus 564 P 564 (671)
+
T Consensus 290 ~ 290 (290)
T cd08607 290 I 290 (290)
T ss_pred C
Confidence 5
No 33
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=4.3e-42 Score=350.34 Aligned_cols=229 Identities=20% Similarity=0.266 Sum_probs=178.4
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccc-ccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKER-GIFSF 350 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~-G~~i~ 350 (671)
||||||+++.+||||++||+.|++.|+|+||||||+||||++||+||.+++|+|+ ++ | .|.
T Consensus 1 iiAHRG~~~~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~-----------------~~~~-~v~ 62 (234)
T cd08570 1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFG-----------------KDGL-IID 62 (234)
T ss_pred CEeCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeC-----------------CCCC-Eec
Confidence 6899999999999999999999999999999999999999999999999999999 66 5 899
Q ss_pred cCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhcc--CcccEEEEecCchhhhhhcCCcHHHHHH
Q 005894 351 DLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTK--AVSGVLININNAAYLASKKGLGVVDAVT 428 (671)
Q Consensus 351 dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~--~~~~i~IeIK~~~~~~~~~~~~~~~~v~ 428 (671)
++||+||++|+.+. .+.+++|||+|+|+++++. +.+.++||||..... ..+++.+.
T Consensus 63 ~~t~~eL~~l~~~~-----------------~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~-----~~~~~~v~ 120 (234)
T cd08570 63 DSTWDELSHLRTIE-----------------EPHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP-----EILFKLIA 120 (234)
T ss_pred cCCHHHHhhccccc-----------------CCCccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH-----HHHHHHHH
Confidence 99999999998751 0236899999999999764 335799999964321 24667888
Q ss_pred HHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCc-cc
Q 005894 429 KALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTES-FT 506 (671)
Q Consensus 429 ~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~-~~ 506 (671)
+++++++......++|+|+||+++.++.+++. |+++++++.... .....+..+.. .+ ..+.+.... +.
T Consensus 121 ~~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~------~~~~~~~~~~~--~~--~~~~~~~~~~~~ 190 (234)
T cd08570 121 EMLAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSL------DYARHFLNYSE--KL--VGISMHFVSLWG 190 (234)
T ss_pred HHHHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCH------HHHHHHhcccc--cc--ceEEeeeehhhc
Confidence 88888753211116999999999999999999 999998876321 11111111110 01 111111100 01
Q ss_pred ccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECCh
Q 005894 507 TNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 507 ~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P 564 (671)
..++++++++|++|++|++||+|++. ++.+++ ++||||||||+|
T Consensus 191 ~~~~~~v~~~~~~gl~v~~wTvn~~~-------------~~~~l~-~~gvdgiiTD~P 234 (234)
T cd08570 191 PFGQAFLPELKKNGKKVFVWTVNTEE-------------DMRYAI-RLGVDGVITDDP 234 (234)
T ss_pred ccCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-HCCCCEEEeCCC
Confidence 14679999999999999999999987 899885 999999999998
No 34
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.2e-41 Score=350.44 Aligned_cols=242 Identities=21% Similarity=0.280 Sum_probs=186.5
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
||||||+++.+||||++||++|++.|||+||||||+||||++||+||.+|.|+|+ ++| .+.+
T Consensus 1 iiaHRG~~~~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~-----------------~~~-~i~~ 62 (249)
T cd08561 1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTD-----------------GTG-PVAD 62 (249)
T ss_pred CcccCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccC-----------------CCC-chhh
Confidence 6899999999999999999999999999999999999999999999999999999 667 7999
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCccc-ccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEA-KNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKA 430 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~-~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~ 430 (671)
+||+||++|+.+ .+|... ..+...+ ..++++|||+|+|+++++ ..++||||... ..++++++++
T Consensus 63 ~t~~el~~l~~~--~~~~~~---~~~~~~~~~~~~~iptL~evl~~~~~---~~~~ieiK~~~-------~~~~~~~~~~ 127 (249)
T cd08561 63 LTLAELRRLDAG--YHFTDD---GGRTYPYRGQGIRIPTLEELFEAFPD---VRLNIEIKDDG-------PAAAAALADL 127 (249)
T ss_pred CCHHHHhhcCcC--ccccCc---cccccccCCCCccCCCHHHHHHhCcC---CcEEEEECCCc-------hhHHHHHHHH
Confidence 999999999876 233210 0010001 124799999999999976 37999999753 2578999999
Q ss_pred HHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHH--HHHhcCCceeee-cC-CCcc
Q 005894 431 LSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKY--ASAVTVTRTSVI-ST-TESF 505 (671)
Q Consensus 431 l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~--a~~v~~~~~~v~-~~-~~~~ 505 (671)
++++++. ++++++||+.++|.++++. |+++++++..... .+...... ..........+. +. +.++
T Consensus 128 l~~~~~~----~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (249)
T cd08561 128 IERYGAQ----DRVLVASFSDRVLRRFRRLCPRVATSAGEGEVA------AFVLASRLGLGSLYSPPYDALQIPVRYGGV 197 (249)
T ss_pred HHHcCCC----CcEEEEECCHHHHHHHHHHCCCcceeccHHHHH------HHHHHhhcccccccCCCCcEEEcCcccCCe
Confidence 9999977 7999999999999999999 9999887642210 00000000 000001111111 11 1122
Q ss_pred cccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHH
Q 005894 506 TTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKY 570 (671)
Q Consensus 506 ~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~ 570 (671)
...++.+++.+|++|+.|++||+|+.. ++.+++ ++||||||||+|..+.++
T Consensus 198 ~~~~~~~v~~~~~~G~~v~vWTVN~~~-------------~~~~l~-~~gVdgIiTD~p~~~~~~ 248 (249)
T cd08561 198 PLVTPRFVRAAHAAGLEVHVWTVNDPA-------------EMRRLL-DLGVDGIITDRPDLLLEV 248 (249)
T ss_pred ecCCHHHHHHHHHCCCEEEEEecCCHH-------------HHHHHH-hcCCCEEEcCCHHHHHhh
Confidence 345689999999999999999999987 899885 999999999999998865
No 35
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=2e-41 Score=346.32 Aligned_cols=236 Identities=25% Similarity=0.292 Sum_probs=181.5
Q ss_pred eEEeccCCCCC-CCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccc
Q 005894 271 LIITHNGASGV-YAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFS 349 (671)
Q Consensus 271 ~iIAHRG~s~~-~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i 349 (671)
+||||||+++. +||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|+ ++| .+
T Consensus 1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~-----------------~~~-~v 62 (240)
T cd08566 1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTN-----------------GKG-KV 62 (240)
T ss_pred CeEecCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccC-----------------CCC-ch
Confidence 48999999999 999999999999999999999999999999999999999999999 677 79
Q ss_pred ccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHH
Q 005894 350 FDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTK 429 (671)
Q Consensus 350 ~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~ 429 (671)
.++||+||++++.+. ||. .+ .+++||||+|+|++++++ ..++||||.. .++.+++
T Consensus 63 ~~~t~~el~~l~~~~--~~~----------~~-~~~~iptL~evl~~~~~~--~~l~iEiK~~----------~~~~~~~ 117 (240)
T cd08566 63 SDLTLAEIRKLRLKD--GDG----------EV-TDEKVPTLEEALAWAKGK--ILLNLDLKDA----------DLDEVIA 117 (240)
T ss_pred hhCcHHHHHhCCcCC--CcC----------CC-CCCCCCCHHHHHHhhhcC--cEEEEEECch----------HHHHHHH
Confidence 999999999999873 332 12 368999999999999886 5899999964 3477899
Q ss_pred HHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccc-
Q 005894 430 ALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTT- 507 (671)
Q Consensus 430 ~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~- 507 (671)
+++++++. ++++++||+.+.++.++++ |++++++++...... ..........+++ ..+.+.. ..
T Consensus 118 ~~~~~~~~----~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~---~~~ 183 (240)
T cd08566 118 LVKKHGAL----DQVIFKSYSEEQAKELRALAPEVMLMPIVRDAEDL-----DEEEARAIDALNL--LAFEITF---DDL 183 (240)
T ss_pred HHHHcCCc----ccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcch-----hHHHHhcccccce--EEEEEec---ccc
Confidence 99999987 7999999999999999999 999999988543111 1001111112221 3333332 21
Q ss_pred cchHHHHHHHHc-CCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECCh
Q 005894 508 NATNILRDLHSA-NISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 508 ~~~~~V~~~~~~-Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P 564 (671)
.....+.+++++ |++|++||+|+......-....|...++.+++ ++||||||||+|
T Consensus 184 ~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~-~~Gvd~I~TD~P 240 (240)
T cd08566 184 DLPPLFDELLRALGIRVWVNTLGDDDTAGLDRALSDPREVWGELV-DAGVDVIQTDRP 240 (240)
T ss_pred ccHHHHHHHHHhCCCEEEEECCCcccccchhhhhhCchhHHHHHH-HcCCCEEecCCC
Confidence 245678888887 99999999996321000000011223788874 999999999998
No 36
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.2e-39 Score=332.12 Aligned_cols=225 Identities=18% Similarity=0.178 Sum_probs=176.8
Q ss_pred CceEEeccCCCCC---CCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccc
Q 005894 269 RPLIITHNGASGV---YAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKER 345 (671)
Q Consensus 269 ~p~iIAHRG~s~~---~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~ 345 (671)
++.+|||||+++. +||||++||++|++.|+ +||+|||+||||++||+||.+|+|+|+ ++
T Consensus 3 ~~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~-----------------~~ 64 (237)
T cd08585 3 KDRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTG-----------------VE 64 (237)
T ss_pred cCCceECCCCCCCCCCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcC-----------------CC
Confidence 3568999999874 79999999999999999 899999999999999999999999999 67
Q ss_pred ccccccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHH
Q 005894 346 GIFSFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVD 425 (671)
Q Consensus 346 G~~i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~ 425 (671)
| .|.++||+||++|+.+. .+++||||+|+|++++++ .+++||||.... ....+++
T Consensus 65 ~-~v~~~t~~eL~~l~~~~------------------~~~~iPtL~evl~~~~~~--~~l~iEiK~~~~----~~~~l~~ 119 (237)
T cd08585 65 G-RVEELTAAELRALRLLG------------------TDEHIPTLDEVLELVAGR--VPLLIELKSCGG----GDGGLER 119 (237)
T ss_pred C-ccccCCHHHHhcCCCCC------------------CCCCCCCHHHHHHHhccC--ceEEEEEccCCc----cchHHHH
Confidence 7 79999999999999751 257899999999999865 579999997542 2235788
Q ss_pred HHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHH--HHHH--HHHhcCCceeeec
Q 005894 426 AVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEE--IKKY--ASAVTVTRTSVIS 500 (671)
Q Consensus 426 ~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~--i~~~--a~~v~~~~~~v~~ 500 (671)
.+++++++++ .+++++|||+++|+++++. |++++++++.....+........ .... ....++ ..+.+
T Consensus 120 ~v~~~l~~~~------~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 191 (237)
T cd08585 120 RVLAALKDYK------GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRP--DFIAY 191 (237)
T ss_pred HHHHHHHhcC------CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCC--CEEEe
Confidence 9999998763 4899999999999999999 99999999854321110100000 0011 111233 23333
Q ss_pred CCCcccccchHHHHHHHHc-CCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEE
Q 005894 501 TTESFTTNATNILRDLHSA-NISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITT 561 (671)
Q Consensus 501 ~~~~~~~~~~~~V~~~~~~-Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiT 561 (671)
.. ...+.++|+++|++ |+.|++||||++. ++++++ ++|+++||-
T Consensus 192 ~~---~~~~~~~v~~~~~~~G~~v~vWTVnd~~-------------~~~~l~-~~G~~~i~~ 236 (237)
T cd08585 192 HL---DDLPNPFVTLARALLGMPVIVWTVRTEE-------------DIARLK-QYADNIIFE 236 (237)
T ss_pred Ch---hhCcCHHHHHHHHhcCCcEEEEeCCCHH-------------HHHHHH-HhCCeeEeC
Confidence 22 23467899999999 9999999999998 899885 999999873
No 37
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=1.9e-39 Score=331.47 Aligned_cols=231 Identities=14% Similarity=0.188 Sum_probs=176.2
Q ss_pred EEeccCC--CCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccc
Q 005894 272 IITHNGA--SGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFS 349 (671)
Q Consensus 272 iIAHRG~--s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i 349 (671)
+|||||+ ++.+||||++||++|++.|||+||+|||+||||++||+||.+++|+.+... ..++ .+
T Consensus 1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~-------------~~~~-~i 66 (237)
T cd08583 1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGL-------------PTSK-NT 66 (237)
T ss_pred CeeecCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCC-------------cccc-cc
Confidence 4899996 788999999999999999999999999999999999999999987633100 0144 68
Q ss_pred ccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHH
Q 005894 350 FDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTK 429 (671)
Q Consensus 350 ~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~ 429 (671)
.++|++||++++.. +++++|||+|+|+++++.+.+.++||||.... . .-..++..+++
T Consensus 67 ~~~t~~el~~~~~~-------------------~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~-~--~~~~~~~~l~~ 124 (237)
T cd08583 67 KPLSYEEFKSKKIY-------------------GKYTPMDFKDVIDLLKKYPDVYIVTDTKQDDD-N--DIKKLYEYIVK 124 (237)
T ss_pred cCCCHHHHhhcccc-------------------CCCCCCCHHHHHHHHHhCCCeEEEEEecCCCc-c--cHHHHHHHHHH
Confidence 99999999997653 24789999999999986433578999996432 0 00135668888
Q ss_pred HHHhc--CCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCccc
Q 005894 430 ALSNA--TFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFT 506 (671)
Q Consensus 430 ~l~~~--~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~ 506 (671)
.++++ ++. +|++++||++..|+.+++. |....+++..... ......+..++...+. ..+++.. .
T Consensus 125 ~~~~~~~~~~----~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~---~ 191 (237)
T cd08583 125 EAKEVDPDLL----DRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQD----SIRLDEIIAFCYENGI--KAVTISK---N 191 (237)
T ss_pred HHHhhccccc----ceeEEEecCHHHHHHHHHhCCCcceeeEecccc----ccchHHHHHHHHHcCC--cEEEech---h
Confidence 88886 355 6999999999999999999 8766555542210 0112233344444443 3444443 2
Q ss_pred ccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChh
Q 005894 507 TNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPA 565 (671)
Q Consensus 507 ~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~ 565 (671)
..++.+++++|++|+.|++||+|++. +|++++ ++||||||||++.
T Consensus 192 ~~~~~~v~~~~~~Gl~v~vwTVn~~~-------------~~~~l~-~~GVdgiiTD~~~ 236 (237)
T cd08583 192 YVNDKLIEKLNKAGIYVYVYTINDLK-------------DAQEYK-KLGVYGIYTDFLT 236 (237)
T ss_pred hcCHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHHH-HcCCCEEEeCCCC
Confidence 34689999999999999999999997 899885 9999999999984
No 38
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=3.2e-38 Score=326.36 Aligned_cols=246 Identities=26% Similarity=0.386 Sum_probs=194.9
Q ss_pred CceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccc
Q 005894 269 RPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIF 348 (671)
Q Consensus 269 ~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~ 348 (671)
.|+||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|||+ +.| .
T Consensus 5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~-----------------~~~-~ 66 (257)
T COG0584 5 MPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTN-----------------GLG-T 66 (257)
T ss_pred ceEEEeccCcCCCCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhcc-----------------Ccc-c
Confidence 5799999999999999999999999999999999999999999999999999999999 667 6
Q ss_pred cccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCc-HHHHH
Q 005894 349 SFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLG-VVDAV 427 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~-~~~~v 427 (671)
+.++||+|+++++.+. +..+.+ .+.+|||+|+++.+ +. .++++||||.+....+ .. .+..+
T Consensus 67 ~~~~~~~~~~~~~~~~-----------~~~~~~--~~~ip~l~~~l~~~-~~-~~~l~ieiK~~~~~~~---~~~~~~~~ 128 (257)
T COG0584 67 VRDLTLAELKRLDAGS-----------FRIPTF--GEEIPTLEELLEAT-GR-KIGLYIEIKSPGFHPQ---EGKILAAL 128 (257)
T ss_pred cccCChhhhcCcccCc-----------ccCCCC--CCccCCHHHHHHHh-cc-cCCeEEEecCCCcccc---hhhhHHHH
Confidence 8899999999999541 222333 58999999999999 42 2689999998765432 12 45666
Q ss_pred HHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeeccc---CCCChhHHHHHHHHHHHhcCCceeeecCCC
Q 005894 428 TKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEV---SAAPREVVEEIKKYASAVTVTRTSVISTTE 503 (671)
Q Consensus 428 ~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~---~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~ 503 (671)
+..+.+..... ...+++++||+...+..+++. |.+++++++.... .......+..+..++..+++....+..
T Consensus 129 ~~~~~~~~~~~-~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--- 204 (257)
T COG0584 129 LALLKRYGGTA-ADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELPRALKEVALYADGVGPDWAMLAE--- 204 (257)
T ss_pred HHHHHHhcccC-CCCceEEEecCHHHHHHHHHhCcCCceEEEEcccchhhhhhccchhhHHHhhhcccCcccceecc---
Confidence 66666664311 116999999999999999999 9999999997642 112234455566666666554332211
Q ss_pred cccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHHH
Q 005894 504 SFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYFR 572 (671)
Q Consensus 504 ~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~~ 572 (671)
..+.++..+|..|+.|++||+++++ .+..+ .+.|||||+||+|+.+.+.+.
T Consensus 205 ----~~~~~v~~~~~~gl~v~~~tv~~~~-------------~~~~~-~~~gvd~i~td~p~~~~~~~~ 255 (257)
T COG0584 205 ----LLTELVDDAHAAGLKVHVWTVNEED-------------DIRLL-LEAGVDGLITDFPDLAVAFLN 255 (257)
T ss_pred ----cccHHHHHHHhCCCeEEEEecCcHH-------------HHHHH-HHcCCCEEEcCCHHHHHHhhc
Confidence 1357999999999999999999997 46666 599999999999999988764
No 39
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=1.3e-37 Score=322.24 Aligned_cols=240 Identities=16% Similarity=0.210 Sum_probs=178.5
Q ss_pred CCceEEeccCCCCCC----------------------CchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCccccc
Q 005894 268 DRPLIITHNGASGVY----------------------AGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKT 325 (671)
Q Consensus 268 ~~p~iIAHRG~s~~~----------------------PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT 325 (671)
+.|+||||||+++.| ||||++||++|++.|+|+||||||+||||++||+||.+|+|+|
T Consensus 22 ~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R~T 101 (309)
T cd08613 22 GKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDCRT 101 (309)
T ss_pred CCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCcccccc
Confidence 378999999997654 9999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccccccccccccCCHHHHhccCCCcCCCCCCCCCCCCCCc-ccccCCcccCHHHHHHHHhccCccc
Q 005894 326 TAATVFMSKATSVPEIQKERGIFSFDLTWTEIQSLKPQISSPFDKSNPPIIRNP-EAKNKGKFVTLDGFLEFAKTKAVSG 404 (671)
Q Consensus 326 ~~~~~f~~r~~~~~~~~~~~G~~i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~-~~~~~~~ipTLeEvL~~~~~~~~~~ 404 (671)
+ ++| .|.++|++||++|+.+ .+|.... ....| ...+.++||||+|+|+++++. +
T Consensus 102 ~-----------------g~g-~V~dlTlaEL~~Ld~g--~~~~~~~--g~~~p~~~~~~~~IPTL~EvL~~~~~~---~ 156 (309)
T cd08613 102 D-----------------GSG-VTRDHTMAELKTLDIG--YGYTADG--GKTFPFRGKGVGMMPTLDEVFAAFPDR---R 156 (309)
T ss_pred C-----------------CCC-chhhCCHHHHhhCCcC--ccccccc--ccccccccCCCCCCcCHHHHHHhcCCC---c
Confidence 9 788 8999999999999987 3332100 00001 011225799999999999874 7
Q ss_pred EEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCC--hHHHHHHhcC-CCceEEEEeecccCCCChhHH
Q 005894 405 VLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDD--SSVLSKFQDV-PAYKKVLHIRKEVSAAPREVV 481 (671)
Q Consensus 405 i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd--~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l 481 (671)
++||||.... ...+.+.+++++++.. ++.+.||+ .+.+++++++ |++++.-... ..
T Consensus 157 l~IEiK~~~~-------~~~~~v~~~i~~~~~~-----r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~~---------~~ 215 (309)
T cd08613 157 FLINFKSDDA-------AEGELLAEKLATLPRK-----RLQVLTVYGGDKPIAALRELTPDLRTLSKAS---------MK 215 (309)
T ss_pred EEEEeCCCCc-------cHHHHHHHHHHhcCcc-----ceEEEEEECCHHHHHHHHHHCCCCceecccc---------hH
Confidence 9999997532 3467899999998874 66667776 7789999999 9987653211 01
Q ss_pred HHHHHHHHH----hcCCc----eeeecC-CCccccc-chHHHHHHHHcCCeEEEE----------eccCcccccccccCC
Q 005894 482 EEIKKYASA----VTVTR----TSVIST-TESFTTN-ATNILRDLHSANISVYIS----------ALRNEYLSIAFDYLA 541 (671)
Q Consensus 482 ~~i~~~a~~----v~~~~----~~v~~~-~~~~~~~-~~~~V~~~~~~Gl~V~vw----------tvn~~~~~~~~d~~~ 541 (671)
.....|+.. ..+.. ....|. ...++.. +..+++++|++|.+|++| |+|+++
T Consensus 216 ~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~--------- 286 (309)
T cd08613 216 DCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPE--------- 286 (309)
T ss_pred HHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCHH---------
Confidence 111122211 11110 111222 1233444 789999999999999999 777776
Q ss_pred ChHHHHHHHHhhcCccEEEECChhhH
Q 005894 542 DPLIEVATFAQGVGVDGITTEFPATA 567 (671)
Q Consensus 542 D~~~e~~~~l~~~GVDgIiTD~P~~~ 567 (671)
+|++++ +.|+|||+||+|+.+
T Consensus 287 ----~~~~l~-~~~~~gi~T~r~~~l 307 (309)
T cd08613 287 ----DLKRLP-EGFTGYIWTNKIEAL 307 (309)
T ss_pred ----HHHHHH-hhCCCeEEeCCHhhc
Confidence 899985 999999999999875
No 40
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=1.3e-37 Score=319.20 Aligned_cols=242 Identities=24% Similarity=0.381 Sum_probs=161.5
Q ss_pred ccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccccccCCH
Q 005894 275 HNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFDLTW 354 (671)
Q Consensus 275 HRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~dlT~ 354 (671)
|||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|.|+|+ +.| .|.++||
T Consensus 1 HRG~~~~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~-----------------~~~-~i~~~t~ 62 (256)
T PF03009_consen 1 HRGASGNAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTG-----------------GDG-PISDLTY 62 (256)
T ss_dssp TTTTTTTSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSS-----------------TES-BGGGS-H
T ss_pred CCCCCCCChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecC-----------------CCc-eeccCCH
Confidence 9999999999999999999999999999999999999999999999999999 566 7999999
Q ss_pred HHHhccC-CCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHh
Q 005894 355 TEIQSLK-PQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSN 433 (671)
Q Consensus 355 ~EL~~L~-~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~ 433 (671)
+||++++ ..... .. ..+...+...++||||+|+|+++.... ..+.|++|............+++.+...+..
T Consensus 63 ~el~~l~~~~~~~--~~----~~~~~~~~~~~~i~tl~e~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (256)
T PF03009_consen 63 AELKKLRTLGSKN--SP----PFRGQRIPGKQKIPTLEEVLELCAKVK-LNLEIKIKSKDEIKDPEFLKIVKDIVESVSD 135 (256)
T ss_dssp HHHTTSBESSTTT--TC----GGTTTTSCTCB--EBHHHHHHHHHTTT-SEEEEEEEECTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcccccCC--cc----cccccceecccccCcHHHHHHhhhhcc-ceeEEEEeecccccchhhccccccccccccc
Confidence 9999999 43111 00 112222223468999999999955432 2455555533211100000234455555555
Q ss_pred cC------CCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHH--HHHHHHHhcCCceeeecCCCc
Q 005894 434 AT------FDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEE--IKKYASAVTVTRTSVISTTES 504 (671)
Q Consensus 434 ~~------~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~--i~~~a~~v~~~~~~v~~~~~~ 504 (671)
.. .. .+++++||++..+..+++. |.+++++++.... ..... ....+..+.... +......
T Consensus 136 ~~~~~~~~~~----~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~ 204 (256)
T PF03009_consen 136 ILKNSKQALS----RRIIISSFDPEALKQLKQRAPRYPVGFLFEQDD-----EAPADISLFELYKFVKCPG--FLASVWN 204 (256)
T ss_dssp CHHHHHHHHC----TSEEEEESCHHHHHHHHHHCTTSEEEEEESSCH-----HHHHH-CCHHHHHHHTTTE--EEEEHGG
T ss_pred cccccccccc----cccccccCcHHHHHHHHhcCCCceEEEEeccCc-----cccccchhhHHHHhhcccc--ccccccc
Confidence 54 33 6999999999999999999 9999999985431 11111 011122222211 1111111
Q ss_pred ccc--cchHHHHHHHHcCCeEEEEeccCc--ccccccccCCChHHHHHHHHhhcCccEEEECChhh
Q 005894 505 FTT--NATNILRDLHSANISVYISALRNE--YLSIAFDYLADPLIEVATFAQGVGVDGITTEFPAT 566 (671)
Q Consensus 505 ~~~--~~~~~V~~~~~~Gl~V~vwtvn~~--~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~ 566 (671)
+.. ..+++|+.+|++|+.|++||+|++ . ++.+++ ++||||||||+|++
T Consensus 205 ~~~~~~~~~~v~~~~~~g~~v~~wtvn~~~~~-------------~~~~l~-~~gvdgIiTD~P~~ 256 (256)
T PF03009_consen 205 YADRLGNPRLVQEAHKAGLKVYVWTVNDPDVE-------------DMKRLL-DLGVDGIITDFPDT 256 (256)
T ss_dssp GGHHCEBHHHHHHHHHTT-EEEEBSB-SHSHH-------------HHHHHH-HHT-SEEEES-HHH
T ss_pred cccccccHHHHHHHHHCCCEEEEEecCCcHHH-------------HHHHHH-hCCCCEEEEcCCCC
Confidence 111 145799999999999999999999 6 788885 99999999999985
No 41
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=3e-37 Score=324.78 Aligned_cols=248 Identities=38% Similarity=0.613 Sum_probs=200.3
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHcccccccc-ccC-
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQN-VYT- 80 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~-~~~- 80 (671)
.+...+..+||||||+||||++||+||.+|+||||+...||+|+|+|.++|.+.+||++.|+|++||+++++++. |++
T Consensus 23 ~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~g~~v~d~T~aeL~~l~~~~~~~~~~ 102 (302)
T cd08571 23 KAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTYVVEGQSTSGIFSFDLTWAEIQTLKPIISNPFSV 102 (302)
T ss_pred HHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCcccccccccccceecccCcccCCeeeeeCCHHHHhhCcccccCcccc
Confidence 344567889999999999999999999999999999999999999999999999999999999999999999643 332
Q ss_pred --CCccCCCCCCCCChhhhhHHHHH--------hcC----------ccHHHHHHHHHHHcCC----ceEEEeCCChHHHH
Q 005894 81 --RSEAFDNTQPIPTPDTIYDLFYS--------QHN----------ISAAKYITEYLQKLIS----NVYYISSPEIGFLK 136 (671)
Q Consensus 81 --r~~~f~~~~~IptL~ev~~~~~~--------~~~----------~~~~~~v~~~l~~~~~----~~~~isSf~~~~L~ 136 (671)
|.+.|.++++||||+||++.+.. +++ ..+++.+++++++++. ++++||||++..|+
T Consensus 103 ~~~~~~~~~~~~IptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~ 182 (302)
T cd08571 103 LFRNPRNDNAGKILTLEDFLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLTSLSKAGYDQTAKKVYISSPDSSVLK 182 (302)
T ss_pred cCCCcccCCCCCcCCHHHHHHhhhccCCceEEEEccCchhhhhhccccHHHHHHHHHHHcCCCCCCCCEEEeCCCHHHHH
Confidence 45566667899999999654422 111 2467788999999984 58999999999999
Q ss_pred HhhhhcC--CCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHc
Q 005894 137 TMDRKVD--HNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNA 214 (671)
Q Consensus 137 ~i~~~~~--~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~ 214 (671)
.+++ .. | ..++++.+ +.. .. .+ ....+..++.||+++++++++++|.++ ..|....+++|++||++
T Consensus 183 ~~~~-~~~~p-~v~~~~l~-~~~--~~----~~--~~~~l~~~~~~a~~v~~~~~~~~~~~~-~~~~~~~~~~V~~ah~~ 250 (302)
T cd08571 183 SFKK-RVGTK-LVFRVLDV-DDT--EP----DT--LLSNLTEIKKFASGVLVPKSYIWPVDS-DSFLTPQTSVVQDAHKA 250 (302)
T ss_pred HHHh-ccCCC-ceEEEeec-CCC--cC----CC--ChhHHHHHHHhcCccccChhHeeecCC-CCcccCccHHHHHHHHc
Confidence 9995 55 5 47777532 111 00 01 012356777889999999999987654 45555667999999999
Q ss_pred CCeEEEeeecCCc-ccCCCCCCChHHHHHHHhhc--CceeeeeEeecCCCcccc
Q 005894 215 GLQVYASGFANDI-YSSYSYNFEPEAEYLTFIDN--SQFAVDGFITDFPTTATE 265 (671)
Q Consensus 215 Gl~V~~wtv~~~~-~~~~~~~~d~~~e~~~~i~~--g~~~Vdgv~td~p~~~~~ 265 (671)
|++|++||||++. ...|+|..|+..++.+++.. | |||||||||..+.+
T Consensus 251 Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~~~~~~~g---VDGiiTD~P~~~~~ 301 (302)
T cd08571 251 GLEVYVSGFANEFVSLAYDYSADPTLEILSFVGNGNS---VDGVITDFPATAAR 301 (302)
T ss_pred CCEEEEEEEecCcccccccccCCHHHHHHHHHHhcCC---CCEEEecCchhhhc
Confidence 9999999999985 47899999999999999987 7 99999999998754
No 42
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=3.5e-36 Score=317.59 Aligned_cols=250 Identities=32% Similarity=0.487 Sum_probs=203.6
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccc--cccccccccccCCcccccccccccCHHHHccccccccccCC
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTING--AFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTR 81 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~--~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r 81 (671)
+...+..+||||||+||||++||+||.+|+||||+.. .||+|++++.++|.+..|+++.|+|++||+++++++.+.++
T Consensus 24 A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~~~v~d~t~~eL~~l~~~~~~~~~ 103 (309)
T cd08602 24 AIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPYR 103 (309)
T ss_pred HHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCCeeeccCCHHHHhhCccCCcCccc
Confidence 3456777999999999999999999999999999976 49999999999999999999999999999999998544444
Q ss_pred CccCCCCCCCCChhhhhHHHHH-------------hcC----------ccHHHHHHHHHHHcCC----ceEEEeCCChHH
Q 005894 82 SEAFDNTQPIPTPDTIYDLFYS-------------QHN----------ISAAKYITEYLQKLIS----NVYYISSPEIGF 134 (671)
Q Consensus 82 ~~~f~~~~~IptL~ev~~~~~~-------------~~~----------~~~~~~v~~~l~~~~~----~~~~isSf~~~~ 134 (671)
.+.|.+.++||||+|+++.+.. |++ ..+++.|++++++++. ++++|+||+++.
T Consensus 104 ~~~~~~~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SFd~~~ 183 (309)
T cd08602 104 DQSYDGQFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKAPVFIQSFEVTN 183 (309)
T ss_pred CcccCCCcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhcccccCCCHHHHHHHHHHHcCCCCCCCCEEEECCCHHH
Confidence 4557756799999999654421 112 2577899999999884 489999999999
Q ss_pred HHHhhhhcCCCCcceEEEecCCCC--cCC--CCCCCHHHHhh--cHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHH
Q 005894 135 LKTMDRKVDHNTTKLVFMVLEPNA--VEP--TTNQTYGSILK--NLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLV 208 (671)
Q Consensus 135 L~~i~~~~~~~~~~~v~~~~~~~~--~~~--~~~~~y~~~~~--~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V 208 (671)
|+.+++.. ..++++++..... ..+ ..+.+|..+.. .+..++.+++++++++.+++|... .+++...+++|
T Consensus 184 L~~~~~~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~v 259 (309)
T cd08602 184 LKYLRNKT---DLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYADGIGPWKDLIIPSDA-NGRLGTPTDLV 259 (309)
T ss_pred HHHHHhhh---CCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHHHhhceEEecchheEEecCC-CCcccCccHHH
Confidence 99999644 3788876533321 111 23456664322 466777889999999999988765 56677778999
Q ss_pred HHHHHcCCeEEEeeecCC-cccCCCCCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 209 TDAHNAGLQVYASGFAND-IYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 209 ~~ah~~Gl~V~~wtv~~~-~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
+.||++|++|++||||++ ...+|+|++|+..+++.+++.| ||||+||||
T Consensus 260 ~~a~~~gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~G---VdgiiTD~P 309 (309)
T cd08602 260 EDAHAAGLQVHPYTFRNENTFLPPDFFGDPYAEYRAFLDAG---VDGLFTDFP 309 (309)
T ss_pred HHHHHcCCEEEEEEecCCCcccCcccCCCHHHHHHHHHHhC---CCEEeCCCC
Confidence 999999999999999998 4578999999999999999998 999999998
No 43
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=6.2e-35 Score=307.14 Aligned_cols=244 Identities=25% Similarity=0.400 Sum_probs=191.4
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccc-cccccccccccCCcccccccccccCHHHHccccccc--cccC
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTING-AFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQ--NVYT 80 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~-~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~--~~~~ 80 (671)
+...+..+||||||+||||++||+||.+|+||||+.. .|++|++++. ++.+.+||++.|||++||+++++++ +|+.
T Consensus 24 A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~~~-~~~~~~~~~v~d~t~~eL~~l~~~~~~~~~~ 102 (300)
T cd08604 24 AVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATTVP-EIGSTSGIFTFDLTWSEIQTLKPAISNPYSV 102 (300)
T ss_pred HHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccccc-cccccCceeeecCcHHHHhhCccCCcCcccc
Confidence 3456777999999999999999999999999999987 8999999964 3444789889999999999999973 4553
Q ss_pred ----CCccCCCCCCCCChhhhhHHHHH--------hc----------CccHHHHHHHHHHHcCC-----ceEEEeCCChH
Q 005894 81 ----RSEAFDNTQPIPTPDTIYDLFYS--------QH----------NISAAKYITEYLQKLIS-----NVYYISSPEIG 133 (671)
Q Consensus 81 ----r~~~f~~~~~IptL~ev~~~~~~--------~~----------~~~~~~~v~~~l~~~~~-----~~~~isSf~~~ 133 (671)
|.+.|.++++||||+|+++.+.. ++ +..+++.+++++++++. ++++||||+++
T Consensus 103 ~~~~~~~~~~~~~~iptL~Evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SF~~~ 182 (300)
T cd08604 103 TGLFRNPANKNAGKFLTLSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDAVLDALTNAGYDNQTAQKVLIQSTDSS 182 (300)
T ss_pred cCcCCCcccCCCCCCCCHHHHHHHHHhcCCceEEEEeeccchhhhccCccHHHHHHHHHHHcCCCCCCCCeEEEEcCCHH
Confidence 44566667899999999654321 11 12477899999999884 47899999999
Q ss_pred HHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHH
Q 005894 134 FLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHN 213 (671)
Q Consensus 134 ~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~ 213 (671)
.|+.+++.. ..++++.+... . ..+ ....+..++.++++++++...++|.. ..++...+++|++||+
T Consensus 183 ~L~~~~~~~---~~~~~~l~~~~-~------~~~--~~~~~~~~~~~a~~v~~~~~~~~~~~--~~~~~~~~~~v~~a~~ 248 (300)
T cd08604 183 VLAAFKKQI---SYERVYVVDET-I------RDA--SDSSIEEIKKFADAVVIDRGSVFPVS--TSFLTRQTNVVEKLQS 248 (300)
T ss_pred HHHHHHhcc---CCceEEEecCc-c------ccc--ChhHHHHHHHhccEEEeChhhccccc--CCcccCchHHHHHHHH
Confidence 999999643 37777654211 0 011 01234566778999999999888765 3556556699999999
Q ss_pred cCCeEEEeeecCC-cccCCCCCCChHHHHHHHh-hcCceeeeeEeecCCCcccc
Q 005894 214 AGLQVYASGFAND-IYSSYSYNFEPEAEYLTFI-DNSQFAVDGFITDFPTTATE 265 (671)
Q Consensus 214 ~Gl~V~~wtv~~~-~~~~~~~~~d~~~e~~~~i-~~g~~~Vdgv~td~p~~~~~ 265 (671)
+|++|++||||++ ...+|+|+.||..++.+++ +.| ||||+||||.++.+
T Consensus 249 ~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~~~~~~~G---VdgIiTD~P~~~~~ 299 (300)
T cd08604 249 ANLTVYVEVLRNEFVSLAFDFFADPTVEINSYVQGAG---VDGFITEFPATAAR 299 (300)
T ss_pred CCCEEEEEEecCCccccchhccCCHHHHHHHHHHHcC---CCEEEecCchhhhc
Confidence 9999999999987 5789999999987777655 678 99999999998654
No 44
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=100.00 E-value=9.9e-34 Score=278.42 Aligned_cols=188 Identities=26% Similarity=0.389 Sum_probs=155.7
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
||||||+++.+||||++||++|++.|||+||+|||+||||++||+||
T Consensus 1 i~aHRG~~~~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd--------------------------------- 47 (189)
T cd08556 1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD--------------------------------- 47 (189)
T ss_pred CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC---------------------------------
Confidence 58999999999999999999999999999999999999999999998
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKAL 431 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l 431 (671)
+|||+|+|+++++. ..++||+|.... +..+++.+++++
T Consensus 48 -----------------------------------i~tL~e~l~~~~~~--~~i~leiK~~~~-----~~~~~~~l~~~i 85 (189)
T cd08556 48 -----------------------------------IPTLEEVLELVKGG--VGLNIELKEPTR-----YPGLEAKVAELL 85 (189)
T ss_pred -----------------------------------CCCHHHHHHhcccC--cEEEEEECCCCC-----chhHHHHHHHHH
Confidence 58999999999973 589999998642 235789999999
Q ss_pred HhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccch
Q 005894 432 SNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNAT 510 (671)
Q Consensus 432 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~ 510 (671)
++++.. ++++++||++..++++++. |++++++++......... . ..+...++ ..+.+.+ ....+
T Consensus 86 ~~~~~~----~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~---~---~~~~~~~~--~~v~~~~---~~~~~ 150 (189)
T cd08556 86 REYGLE----ERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLL---A---ELARALGA--DAVNPHY---KLLTP 150 (189)
T ss_pred HHcCCc----CCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchh---h---hHHHhcCC--eEEccCh---hhCCH
Confidence 999976 7999999999999999999 999999998654321110 0 11222222 3333332 33467
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
.+++.+|++|++|++||+|+.+ ++..+ .++|||||+||+
T Consensus 151 ~~i~~~~~~g~~v~~wtvn~~~-------------~~~~~-~~~GVdgI~TD~ 189 (189)
T cd08556 151 ELVRAAHAAGLKVYVWTVNDPE-------------DARRL-LALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHcCCEEEEEcCCCHH-------------HHHHH-HHCCCCEEecCC
Confidence 9999999999999999999987 88888 499999999996
No 45
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=3.5e-35 Score=312.46 Aligned_cols=329 Identities=34% Similarity=0.491 Sum_probs=270.7
Q ss_pred HHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCccccc----cC--CceEEeccCCCCCC
Q 005894 209 TDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEA----ID--RPLIITHNGASGVY 282 (671)
Q Consensus 209 ~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~----i~--~p~iIAHRG~s~~~ 282 (671)
.++|..|+++++|.+.++...+|+|++++..+++.++.++.++++++.+|+|...... .+ ...|++|||++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~rga~g~~ 81 (341)
T KOG2258|consen 2 DDAHIAGLEVFASGFANDFSLAFNYSYALILVTLAFLLNVLFSLLFLFSDPPPTASAHKNLFLHIGGWLIIAHRGASGDA 81 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhhhhHhhhcCCccchhhhHHHhcCCCCceeEeccCCCCCC
Confidence 5789999999999999999999999999999999999999999999999999997653 33 68899999999999
Q ss_pred CchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccccccCCHHHHhccCC
Q 005894 283 AGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFDLTWTEIQSLKP 362 (671)
Q Consensus 283 PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~dlT~~EL~~L~~ 362 (671)
||||++||++|++.|||.||||||+|+||++|++||.+..|+++ .++ .++++||.|++++.+
T Consensus 82 penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~-----------------v~~-~~~~lt~~e~~~l~~ 143 (341)
T KOG2258|consen 82 PENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTG-----------------VPE-IVFDLTWMELRKLGP 143 (341)
T ss_pred CcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeec-----------------cee-eeccCCHHHHhccCc
Confidence 99999999999999999999999999999999999999999998 344 489999999999999
Q ss_pred CcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCc
Q 005894 363 QISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQ 442 (671)
Q Consensus 363 ~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 442 (671)
...+++.+ +.+ ..+++|+|+|..+.+-+.+ +.++-|.| ..+.+++++.++++++.....+
T Consensus 144 ~~~~~~~~--------~~~-~~~~~~~l~e~v~~~~~~n-~~~l~d~~----------~~~~~~vl~~l~~~~~~~~~~~ 203 (341)
T KOG2258|consen 144 KIENPFAG--------PII-TLEKLLTLAEAVASVVGNN-VAMLNDVK----------LLVVDKVLEALKNATSDFSLYD 203 (341)
T ss_pred cccCcccc--------ccc-chhhhccHHHHHHHHHcCC-hhhhhhhh----------hhhHHHHHHHHHHHhcCCCccc
Confidence 86554311 111 3478999999999998753 23444444 1467788888888776655457
Q ss_pred eEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccch-HHHHHHHHcC
Q 005894 443 QVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNAT-NILRDLHSAN 520 (671)
Q Consensus 443 ~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~-~~V~~~~~~G 520 (671)
+++++||++.++.++++. |.+.+ ...++.......+++++++.++..++..+++....+..... .++..+++.+
T Consensus 204 kv~v~s~~~~~l~~~~~~~~~~~i----~~~~~~~~ls~~~dik~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 279 (341)
T KOG2258|consen 204 KVLVQSFNPIVLYRLKKLDPFILI----GDTWRFTFLSGIEDIKKRAFAVVSSKLAIFPVSDSLVLAITKNVVAPLQKLN 279 (341)
T ss_pred eEEEEecCcHHHHHhccCCceEEe----cceecchhhccchhhhcccceeeechHHHHHHHHHHhhhhhcceeeehhcCC
Confidence 999999999999999998 76433 33332222233456777777777777666665444444344 7899999999
Q ss_pred CeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHHHhcCCCCCC
Q 005894 521 ISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYFRSKCSDDVE 580 (671)
Q Consensus 521 l~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~~~~~~~~~~ 580 (671)
+.|+++..+++ ..++.||+.++..++..+..+.|++|.+|+++..+.++.++.|.....
T Consensus 280 ~~v~~~~~~~e-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 338 (341)
T KOG2258|consen 280 LVVYVEVFNNE-VVLAVDFSAAPTIELAGWITNVGIDGYITDFHLTAPRLTDNPCEGLFG 338 (341)
T ss_pred cEEEEEEeecc-ceeeccccccCceEeeeeeccccccCceeeccchhhHhhccccccccc
Confidence 99999999999 789999999999999999889999999999999999999999876543
No 46
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=7.7e-33 Score=295.20 Aligned_cols=255 Identities=15% Similarity=0.129 Sum_probs=186.1
Q ss_pred CcccccCCCeEEEeeceeecCCeEEeecCC-cccccccccc--cccccccccccCCcc----cccccccccCHHHHcccc
Q 005894 1 MAKSNCLSNAIMLCNLQFSKDGLGVCLSDV-RLNNITTING--AFKDQQTTKNINGNN----VRGWFSVDYTLEQLGQLY 73 (671)
Q Consensus 1 ~~~~~~~~~~~iE~DVqlTkDG~~Vv~HD~-~LdrtT~~~~--~~~~~~~~~~~~g~~----~~G~~v~d~T~~EL~~l~ 73 (671)
|+++...+..+||||||+||||++||+||. +|+||||++. .|++|+++..++|.+ .++|++.|||++||++++
T Consensus 37 f~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g~~~~~~~~~~~v~d~TlaELk~L~ 116 (356)
T cd08560 37 YEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPANATKPASAECCTSDITLAEFKSLC 116 (356)
T ss_pred HHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhccccccccccccccccCcchhhCcHHHHhcCC
Confidence 345667789999999999999999999996 8999999986 689999999999987 678889999999999999
Q ss_pred cccccc----------------CCCccCCCCCCCCChhhhhHHHHH-------hcC-----------c---cHHHHHHHH
Q 005894 74 LVQNVY----------------TRSEAFDNTQPIPTPDTIYDLFYS-------QHN-----------I---SAAKYITEY 116 (671)
Q Consensus 74 ~~~~~~----------------~r~~~f~~~~~IptL~ev~~~~~~-------~~~-----------~---~~~~~v~~~ 116 (671)
+++.++ .|+..|.++++||||+|+++.+-. |.+ . .+++.++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~ 196 (356)
T cd08560 117 GKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSLGVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDE 196 (356)
T ss_pred CccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhcCceEEEEeCCCcccccccccccHHHHHHHHHHH
Confidence 864221 122335557899999999554321 222 0 367889999
Q ss_pred HHHcCC--ceEEEeCCChHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHH-HHhhceecCCCcceee
Q 005894 117 LQKLIS--NVYYISSPEIGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAI-KSFASGIVVPKSYIIP 193 (671)
Q Consensus 117 l~~~~~--~~~~isSf~~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i-~~~a~~i~~~~~~i~p 193 (671)
+++++. ++++||||+++.|+.+++ ..| ..++.+.++...........++. ..+..+ ..++++|++++..+.+
T Consensus 197 l~~~g~~~~~v~iqSFd~~~L~~~~~-~~p-~~~~~l~~l~~~~~~~~~~~~~~---~~l~~i~a~~a~~i~P~~~~l~~ 271 (356)
T cd08560 197 YKEAGVPPSRVWPQSFNLDDIFYWIK-NEP-DFGRQAVYLDDRDDTADFPATWS---PSMDELKARGVNIIAPPIWMLVD 271 (356)
T ss_pred HHHcCCCCCCEEEECCCHHHHHHHHH-hCC-CCCeeEEEEccCCccccccccHH---HHHHHHHhCCccEecCchhhccc
Confidence 999983 699999999999999984 445 24443323322111111111122 335666 4568999999888876
Q ss_pred cCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcc-c--C-CC---------CCCChHHHHHHHh-hcCceeeeeEeecC
Q 005894 194 VNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIY-S--S-YS---------YNFEPEAEYLTFI-DNSQFAVDGFITDF 259 (671)
Q Consensus 194 ~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~-~--~-~~---------~~~d~~~e~~~~i-~~g~~~Vdgv~td~ 259 (671)
.+. .+...++++|++||++||+|++|||+++.. . + ++ +..|...++..|+ +.| ||||+|||
T Consensus 272 ~~~--~~~~~~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G---vDGvftD~ 346 (356)
T cd08560 272 PDE--NGKIVPSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDMYNVLDVLARDVG---ILGIFSDW 346 (356)
T ss_pred ccc--ccccCCHHHHHHHHHcCCEEEEEEeecCcccccCcccccccccccccccccHHHHHHHHHHhcC---CCEEEccC
Confidence 542 333456899999999999999999987622 1 1 33 3445568888888 678 99999999
Q ss_pred CCcccc
Q 005894 260 PTTATE 265 (671)
Q Consensus 260 p~~~~~ 265 (671)
|.+..-
T Consensus 347 p~~~~~ 352 (356)
T cd08560 347 PATVTY 352 (356)
T ss_pred CCceeE
Confidence 998654
No 47
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=1.5e-32 Score=291.18 Aligned_cols=245 Identities=24% Similarity=0.321 Sum_probs=179.0
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCC-
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTR- 81 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r- 81 (671)
.+...+..+||||||+||||++||+||.+|+||||+...|++|+++. | . ++|.|+|++||++++++ .||+.
T Consensus 23 ~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~---g---~-~~v~dlT~aEL~~ld~g-~~f~~~ 94 (318)
T cd08600 23 LAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRKD---G---R-YYVIDFTLDELKSLSVT-ERFDIE 94 (318)
T ss_pred HHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCcccccccccccC---C---c-eeEeeCcHHHHhhCCCC-CCcccc
Confidence 34456788999999999999999999999999999999999998652 2 2 44999999999999998 55532
Q ss_pred --------CccC---CCCCCCCChhhhhHHHH-------------HhcC---------ccHHHHHHHHHHHcCC----ce
Q 005894 82 --------SEAF---DNTQPIPTPDTIYDLFY-------------SQHN---------ISAAKYITEYLQKLIS----NV 124 (671)
Q Consensus 82 --------~~~f---~~~~~IptL~ev~~~~~-------------~~~~---------~~~~~~v~~~l~~~~~----~~ 124 (671)
+.+| ..+++||||+|+++.+. .|.+ ..+++.+++++++++. ++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 174 (318)
T cd08600 95 NGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQEGKDIAAATLEVLKKYGYTSKNDK 174 (318)
T ss_pred cccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhhccccHHHHHHHHHHHcCCCCCCCe
Confidence 1223 24789999999965321 1222 2478899999999983 36
Q ss_pred EEEeCCChHHHHHhhhhcCCC---CcceEEEecCCCCcCC-------CCCCCHHHHhh--cHHHHHHhhceecCCCccee
Q 005894 125 YYISSPEIGFLKTMDRKVDHN---TTKLVFMVLEPNAVEP-------TTNQTYGSILK--NLTAIKSFASGIVVPKSYII 192 (671)
Q Consensus 125 ~~isSf~~~~L~~i~~~~~~~---~~~~v~~~~~~~~~~~-------~~~~~y~~~~~--~l~~i~~~a~~i~~~~~~i~ 192 (671)
++|+||++..|+.++++..|+ ..++++++........ ..+.+|..+.. .+..++.+|+++++++..+.
T Consensus 175 v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~l~ 254 (318)
T cd08600 175 VYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDPGGWVNYDYDWMFTKGGLKEIAKYADGVGPWYSMII 254 (318)
T ss_pred EEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCcccccccCCccccchhhhcCHHHHHHHHHhheeccCCHHHcc
Confidence 999999999999999546551 2788875532111110 12335666532 46677889999999998886
Q ss_pred ecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHH-HhhcCceeeeeEeecCCC
Q 005894 193 PVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLT-FIDNSQFAVDGFITDFPT 261 (671)
Q Consensus 193 p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~-~i~~g~~~Vdgv~td~p~ 261 (671)
+.++ +.+...++++|++||++||+|++||||++....|. .+....+.. +++.| |||||||||.
T Consensus 255 ~~~~-~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~--~~~~~~~~~~l~~~G---VDGiiTD~P~ 318 (318)
T cd08600 255 EEKS-SKGNIVLTDLVKDAHEAGLEVHPYTVRKDALPEYA--KDADQLLDALLNKAG---VDGVFTDFPD 318 (318)
T ss_pred cccC-CCCccChHHHHHHHHHcCCEEEEEeccCCcccccc--CCHHHHHHHHHHhcC---CcEEEcCCCC
Confidence 6543 34555667999999999999999999998653332 333222222 46777 9999999995
No 48
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=99.98 E-value=1.3e-31 Score=286.83 Aligned_cols=250 Identities=21% Similarity=0.297 Sum_probs=180.7
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCC--
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTR-- 81 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r-- 81 (671)
+...+..+||||||+||||++||+||.+|+||||+...||+|++++ | . +++.|+|++||++++++ .||+.
T Consensus 50 A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~~~~~---g---~-~~v~dlT~aEL~~ld~~-~~f~~~~ 121 (355)
T PRK11143 50 AYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRARKD---G---R-YYAIDFTLDEIKSLKFT-EGFDIEN 121 (355)
T ss_pred HHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCcccccccccccC---C---c-eeEeeCcHHHHhhCCCC-CCccccc
Confidence 4456778999999999999999999999999999999999998752 2 3 44999999999999998 45431
Q ss_pred -------CccCC---CCCCCCChhhhhHHHH-------------HhcC---------ccHHHHHHHHHHHcCC----ceE
Q 005894 82 -------SEAFD---NTQPIPTPDTIYDLFY-------------SQHN---------ISAAKYITEYLQKLIS----NVY 125 (671)
Q Consensus 82 -------~~~f~---~~~~IptL~ev~~~~~-------------~~~~---------~~~~~~v~~~l~~~~~----~~~ 125 (671)
+.+|. .+++||||+|+.+.+- .|++ ..+++.+++++++++. +++
T Consensus 122 g~~~~~~~~~~~~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~~l~~~g~~~~~~~v 201 (355)
T PRK11143 122 GKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKVLEVLKKYGYTGKDDKV 201 (355)
T ss_pred ccccccccccccccCCCCccCCHHHHHHHHHHhhhhcCCCceeeEeccCcccccccchhHHHHHHHHHHHhCCCCCCCCE
Confidence 12232 4799999999955332 1222 2477889999999883 579
Q ss_pred EEeCCChHHHHHhhhhcCCC---CcceEEEecCCCCc---CC---C--CCCCHHHHh--hcHHHHHHhhceecCCCccee
Q 005894 126 YISSPEIGFLKTMDRKVDHN---TTKLVFMVLEPNAV---EP---T--TNQTYGSIL--KNLTAIKSFASGIVVPKSYII 192 (671)
Q Consensus 126 ~isSf~~~~L~~i~~~~~~~---~~~~v~~~~~~~~~---~~---~--~~~~y~~~~--~~l~~i~~~a~~i~~~~~~i~ 192 (671)
+|+||++..|+.+++...|. ..++++.+...... +. . .+..|..+. ..+..++.++.++++.+..+.
T Consensus 202 ~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~p~~~~l~ 281 (355)
T PRK11143 202 YLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNYDWMFKPGAMKEVAKYADGIGPDYHMLV 281 (355)
T ss_pred EEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccchhhhcChhhHHHHHhhceeecCChhhee
Confidence 99999999999999656563 14777654322111 00 0 122343321 235667778999988876665
Q ss_pred ecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHH-hhcCceeeeeEeecCCCcccccc
Q 005894 193 PVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTF-IDNSQFAVDGFITDFPTTATEAI 267 (671)
Q Consensus 193 p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~-i~~g~~~Vdgv~td~p~~~~~~i 267 (671)
+.+. ..++.+++++|++||++|++|++||||++.. ..|.+|+....+.+ .+.| |||||||+|.....++
T Consensus 282 ~~~~-~~~~~~~~~~v~~ah~~Gl~V~~WTVn~~~~--~~~~~d~~~~~~~~~~~~G---VDGIiTD~P~~~~~~l 351 (355)
T PRK11143 282 DETS-TPGNIKLTGMVKEAHQAKLVVHPYTVRADQL--PEYATDVNQLYDILYNQAG---VDGVFTDFPDKAVKFL 351 (355)
T ss_pred eccc-cCCccChHHHHHHHHHcCCEEEEEEeccccc--hhhhcChHHHHHHHHHccC---CCEEEcCChHHHHHHH
Confidence 5432 3555677899999999999999999998843 25666764443332 3778 9999999999877644
No 49
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=99.97 E-value=1.5e-31 Score=261.44 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=136.8
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
||||||+++.+||||++||+.|++.||++||+|||+|+||++||+||.+++|+|.
T Consensus 1 iiaHRG~~~~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~------------------------- 55 (179)
T cd08555 1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA------------------------- 55 (179)
T ss_pred CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC-------------------------
Confidence 5899999999999999999999999999999999999999999999999987652
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhcc-----CcccEEEEecCchhhhhhcCCcHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTK-----AVSGVLININNAAYLASKKGLGVVDA 426 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~-----~~~~i~IeIK~~~~~~~~~~~~~~~~ 426 (671)
++++|||+|+|+++++. ..+.++||+|.... ....+.++
T Consensus 56 --------------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~----~~~~~~~~ 99 (179)
T cd08555 56 --------------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP----EYDEFLAK 99 (179)
T ss_pred --------------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC----cchHHHHH
Confidence 25799999999999872 23579999997542 22367789
Q ss_pred HHHHHHhcC---CCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCC
Q 005894 427 VTKALSNAT---FDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTT 502 (671)
Q Consensus 427 v~~~l~~~~---~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~ 502 (671)
+++.+++++ +. ++|+++|| ... +.. ..+..
T Consensus 100 ~~~~~~~~~~~~~~----~~v~i~sf--------~~~~~~~--------------------------------~~~~~-- 133 (179)
T cd08555 100 VLKELRVYFDYDLR----GKVVLSSF--------NALGVDY--------------------------------YNFSS-- 133 (179)
T ss_pred HHHHHHHcCCcccC----CCEEEEee--------cccCCCh--------------------------------hcccc--
Confidence 999999998 44 69999999 000 000 00000
Q ss_pred CcccccchHHHHHHHHcCCeEEEEeccC-cccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 503 ESFTTNATNILRDLHSANISVYISALRN-EYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 503 ~~~~~~~~~~V~~~~~~Gl~V~vwtvn~-~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
....++++|+++|++|++|++||+|+ .. ++++++ ++|||||+||+
T Consensus 134 --~~~~~~~~v~~~~~~g~~v~~wtvn~~~~-------------~~~~l~-~~Gvd~i~TD~ 179 (179)
T cd08555 134 --KLIKDTELIASANKLGLLSRIWTVNDNNE-------------IINKFL-NLGVDGLITDF 179 (179)
T ss_pred --hhhcCHHHHHHHHHCCCEEEEEeeCChHH-------------HHHHHH-HcCCCEEeCCC
Confidence 02235789999999999999999998 76 788885 99999999996
No 50
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=99.97 E-value=8.2e-31 Score=276.11 Aligned_cols=239 Identities=27% Similarity=0.368 Sum_probs=170.4
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccC--
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYT-- 80 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~-- 80 (671)
.+...+..+||||||+||||++||+||.+|+||||+..+++.+ |...+|..|.++|++||++++++ .|++
T Consensus 23 ~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~-------~~~~~~~~v~~~t~~eL~~l~~~-~~~~~~ 94 (296)
T cd08559 23 LAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR-------GRKDTGYFVIDFTLAELKTLRAG-SWFNQR 94 (296)
T ss_pred HHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCcccccccc-------ccCCCCeeeecCcHHHHhcCCCC-Cccccc
Confidence 3445678899999999999999999999999999997766654 33445555999999999999998 4543
Q ss_pred ---CCccCCCCCCCCChhhhhHHHHH-------h------cC---------ccHHHHHHHHHHHcC-C---ceEEEeCCC
Q 005894 81 ---RSEAFDNTQPIPTPDTIYDLFYS-------Q------HN---------ISAAKYITEYLQKLI-S---NVYYISSPE 131 (671)
Q Consensus 81 ---r~~~f~~~~~IptL~ev~~~~~~-------~------~~---------~~~~~~v~~~l~~~~-~---~~~~isSf~ 131 (671)
+...+..+++||||+||++.+.. . .+ ..+++.|++++++++ . ++++|+||+
T Consensus 95 ~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~ 174 (296)
T cd08559 95 YPERAPSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQEGPDIEEKLLEVLKKYGYTGKNDPVFIQSFE 174 (296)
T ss_pred ccccCccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhhcCCCHHHHHHHHHHHcCCCCCCCCEEEecCC
Confidence 11122357999999999765533 1 12 246788999999998 3 689999999
Q ss_pred hHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHh--hcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHH
Q 005894 132 IGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSIL--KNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVT 209 (671)
Q Consensus 132 ~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~--~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~ 209 (671)
+..|+++++ ..| +.++++++.............|..+. ..+..++.+++++++.+..+.+... +....+.++|+
T Consensus 175 ~~~L~~~r~-~~p-~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~v~ 250 (296)
T cd08559 175 PESLKRLRN-ETP-DIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIGPWKSLIIPEDS--NGLLVPTDLVK 250 (296)
T ss_pred HHHHHHHHH-hCC-CCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhCCCHHhcccccc--ccccCchHHHH
Confidence 999999995 556 48888765332211111112222221 1345555678888888777643221 23344469999
Q ss_pred HHHHcCCeEEEeeecCC-cccCCCCCCChHHHHHHHhhc-CceeeeeEeecCC
Q 005894 210 DAHNAGLQVYASGFAND-IYSSYSYNFEPEAEYLTFIDN-SQFAVDGFITDFP 260 (671)
Q Consensus 210 ~ah~~Gl~V~~wtv~~~-~~~~~~~~~d~~~e~~~~i~~-g~~~Vdgv~td~p 260 (671)
.||++|++|++||||++ ....|+|. .+++++++. | |||||||+|
T Consensus 251 ~a~~~Gl~v~~WTvn~~~~~~~~~~~----~~~~~l~~~~G---VdgIiTD~P 296 (296)
T cd08559 251 DAHKAGLLVHPYTFRNENLFLAPDFK----QDMDALYNAAG---VDGVFTDFP 296 (296)
T ss_pred HHHHcCCEEEEEEecCcccccccccc----cCHHHHHHHhC---CCEEEcCCC
Confidence 99999999999999984 12233333 337899998 8 999999998
No 51
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=99.96 E-value=1.5e-29 Score=260.57 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=144.8
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCC-
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRS- 82 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~- 82 (671)
+...+..+||+|||+||||++||+||.+|+||||+ +|. |.++|++||++++++ .||...
T Consensus 24 A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~~------------------~g~-v~~~t~~el~~ld~g-~~~~~~~ 83 (263)
T cd08580 24 ALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNG------------------SGA-VSAYTAAQLATLNAG-YNFKPEG 83 (263)
T ss_pred HHHcCCCEEEEEeEECCCCCEEEeCCCchhcccCC------------------CCC-hhhCcHHHHhcCCCc-ccccccc
Confidence 44567889999999999999999999999999999 888 999999999999998 565321
Q ss_pred -ccCC-CCCCCCChhhhhHHHHH-----hcC----ccHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCC-----
Q 005894 83 -EAFD-NTQPIPTPDTIYDLFYS-----QHN----ISAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHN----- 145 (671)
Q Consensus 83 -~~f~-~~~~IptL~ev~~~~~~-----~~~----~~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~----- 145 (671)
..|. .+++||||+|+++.+.. +.+ ..+++.+++++++++ .++++|+||++..|+.+++ ..|.
T Consensus 84 ~~~~~~~~~~iPtL~evl~~~~~~~l~iEiK~~~~~~~~~~v~~~i~~~~~~~~v~v~SF~~~~l~~~~~-~~p~~~~~~ 162 (263)
T cd08580 84 GYPYRGKPVGIPTLEQVLRAFPDTPFILDMKSLPADPQAKAVARVLERENAWSRVRIYSTNADYQDALAP-YPQARLFES 162 (263)
T ss_pred CcccCCCCCcCccHHHHHHhhcCCeEEEEECCCCcHHHHHHHHHHHHhcCCCCCEEEEECCHHHHHHHHh-cCccccccc
Confidence 1243 35699999999765532 222 146788999999998 6799999999999999994 5552
Q ss_pred -CcceEEEecCCCCcCC-CCCCCHH-----HHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHc-CCe
Q 005894 146 -TTKLVFMVLEPNAVEP-TTNQTYG-----SILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNA-GLQ 217 (671)
Q Consensus 146 -~~~~v~~~~~~~~~~~-~~~~~y~-----~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~-Gl~ 217 (671)
.....+. ........ ...+... .+...+..++.++.+. ..+.| +|.....++|+.||++ |++
T Consensus 163 ~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~l~t~~~V~~~h~~~gl~ 232 (263)
T cd08580 163 RDVTRTRL-ANVAMAHQCDLPPDSGAWAGFELRRKVTVVETFTLGE----GRSPV-----QATLWTPAAVDCFRRNSKVK 232 (263)
T ss_pred HHHHHHHH-HhhhcccccccCccchhhccccccccchheeeecccc----ccccc-----ccccCCHHHHHHHHhcCCcE
Confidence 0111110 00000000 0000000 0000111111111111 11111 2223346899999999 999
Q ss_pred EEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCc
Q 005894 218 VYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTT 262 (671)
Q Consensus 218 V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~ 262 (671)
|++||||++.. |+++++.| |||||||+|..
T Consensus 233 V~~WTVN~~~~------------~~~l~~~G---VDgIiTD~P~~ 262 (263)
T cd08580 233 IVLFGINTADD------------YRLAKCLG---ADAVMVDSPAA 262 (263)
T ss_pred EEEEEeCCHHH------------HHHHHHcC---CCEEEeCCccc
Confidence 99999999855 89999999 99999999975
No 52
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.95 E-value=6.6e-28 Score=244.81 Aligned_cols=190 Identities=14% Similarity=0.158 Sum_probs=139.0
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccc-cccCCC
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQ-NVYTRS 82 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~-~~~~r~ 82 (671)
+...+..+||||||+||||++||+||.+|+|+||+ +|. +.++|++||++++++. +||.
T Consensus 22 A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~------------------~~~-v~~~t~~el~~l~~~~~~~~~-- 80 (229)
T cd08581 22 AVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGV------------------EGL-LHELEDAELDSLRVAEPARFG-- 80 (229)
T ss_pred HHHcCCCEEEEeeeECCCCcEEEECCCccccccCC------------------Cce-eccCCHHHHhhcccccCcccc--
Confidence 44567789999999999999999999999999999 888 9999999999998753 3443
Q ss_pred ccCCCCCCCCChhhhhHHHHH--hc------C------ccHHHHHHHHHHHcC--CceEEEeCCChHHHHHhhhhcCCCC
Q 005894 83 EAFDNTQPIPTPDTIYDLFYS--QH------N------ISAAKYITEYLQKLI--SNVYYISSPEIGFLKTMDRKVDHNT 146 (671)
Q Consensus 83 ~~f~~~~~IptL~ev~~~~~~--~~------~------~~~~~~v~~~l~~~~--~~~~~isSf~~~~L~~i~~~~~~~~ 146 (671)
..|. +++||||+||++.+.. .. + ..+++.+..+++.++ .++++|+||++..|+++++. | .
T Consensus 81 ~~~~-~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~SF~~~~l~~~r~~--~-~ 156 (229)
T cd08581 81 SRFA-GEPLPSLAAVVQWLAQHPQVTLFVEIKTESLDRFGLERVVDKVLRALPAVAAQRVLISFDYDLLALAKQQ--G-G 156 (229)
T ss_pred cccC-CccCCCHHHHHHHHhhCCCceEEEEecCCcccccchhHHHHHHHHHHHhccCCeEEEeCCHHHHHHHHhc--C-C
Confidence 4555 7999999999775533 11 2 134456667777654 36899999999999999964 4 4
Q ss_pred cceEEEecCCCCcCCCCCCCHHHHhhcHHHHHH-hhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecC
Q 005894 147 TKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKS-FASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFAN 225 (671)
Q Consensus 147 ~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~ 225 (671)
.++.+.+.... . . ....+.. .++.+.+... + ...|+.+|++|++|++||||+
T Consensus 157 ~~~~~l~~~~~------~---~----~~~~~~~~~~~~~~~~~~-~-------------~~~v~~~~~~G~~v~vWTVn~ 209 (229)
T cd08581 157 PRTGWVLPDWD------D---A----SLAEADELQPDYLFCDKN-L-------------LPDTGDLWAGTWKWVIYEVNE 209 (229)
T ss_pred CCeEEEeccCC------h---H----HHHHHHhhCCCEEecccc-c-------------ChhhHHHHhCCceEEEEEcCC
Confidence 77776432110 0 0 0111111 1222222221 1 246889999999999999999
Q ss_pred CcccCCCCCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 226 DIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 226 ~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
+.. ++++++.| |||||||+|
T Consensus 210 ~~~------------~~~l~~~G---VdgiiTD~P 229 (229)
T cd08581 210 PAE------------ALALAARG---VALIETDNI 229 (229)
T ss_pred HHH------------HHHHHHhC---CcEEEcCCC
Confidence 854 88999999 999999998
No 53
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=99.95 E-value=2.8e-28 Score=256.83 Aligned_cols=205 Identities=11% Similarity=0.039 Sum_probs=149.5
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCC
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRS 82 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~ 82 (671)
.+...|..+||+|||+||||++||+||.+|+||||+...||.++ .|. +.++|++||++++++ +||+..
T Consensus 45 ~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~~~~~~~----------~~~-V~~~TlaEL~~ld~g-~wf~~~ 112 (316)
T cd08610 45 KAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGEVQPESA----------CEN-PAFFNWDFLSTLNAG-KWFVKP 112 (316)
T ss_pred HHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCCcccccc----------ccc-hhhCCHHHHhhCCCC-CccCcc
Confidence 34556888999999999999999999999999999988888876 566 999999999999999 776532
Q ss_pred ccC------------C-CCCCCCChhhhhHHHHH-------hcCc---------cHHHHHHHHH-HHcCCceEEEeCCCh
Q 005894 83 EAF------------D-NTQPIPTPDTIYDLFYS-------QHNI---------SAAKYITEYL-QKLISNVYYISSPEI 132 (671)
Q Consensus 83 ~~f------------~-~~~~IptL~ev~~~~~~-------~~~~---------~~~~~v~~~l-~~~~~~~~~isSf~~ 132 (671)
..| . .+++||||+||.+.+.. |.+. .+++.+++.+ ++++....++.||+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~e~IPTLeEvL~~~~~~~~~l~IEIK~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~v~sf~~ 192 (316)
T cd08610 113 RPFYNMKPLSEADKERARNQSIPKLSNFLRLAEKENKLVIFDLYRPPPKHPYRHTWIRRVLEVILNEVGIEQHLVLWLPA 192 (316)
T ss_pred cccccccccccccccccCCCCCCCHHHHHHHhHhcCceEEEEeCCCcccCcchhHHHHHHHHHHHHHcCCCCCEEEEcCH
Confidence 212 1 37999999999665432 1110 2566777776 676732334446889
Q ss_pred HHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHH-HhhceecCCCcceeecCCCCCCcCCCcHHHHHH
Q 005894 133 GFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIK-SFASGIVVPKSYIIPVNNKTRYLEPATTLVTDA 211 (671)
Q Consensus 133 ~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~-~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~a 211 (671)
..++.++ +..|. .+..+... . .+..+. ..+.++.+....+ ..++|+.|
T Consensus 193 ~~l~~~~-~~~P~-~~~~l~~~--------~---------~~~~l~~~~~~~l~~~~~~l------------~~~~v~~a 241 (316)
T cd08610 193 HDRQYVQ-SVAPG-FKQHVGRK--------V---------PIETLLKNNISILNLAYKKL------------FSNDIRDY 241 (316)
T ss_pred HHHHHHH-HHCcc-hhhhhccc--------c---------cHHHHHHcCCeEEccchhhC------------CHHHHHHH
Confidence 9999998 46663 55332110 0 011122 1245555544333 25899999
Q ss_pred HHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcccc
Q 005894 212 HNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATE 265 (671)
Q Consensus 212 h~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~ 265 (671)
|++|++|++||||++.. ++++++.| ||||+||+|.....
T Consensus 242 ~~~Gl~V~vWTVNd~~~------------~~~l~~~G---VDgIiTD~P~~l~~ 280 (316)
T cd08610 242 KAANIHTNVYVINEPWL------------FSLAWCSG---IHSVTTNNIHLLKQ 280 (316)
T ss_pred HHCCCEEEEECCCCHHH------------HHHHHhCC---cCEEEeCCHHHHHH
Confidence 99999999999999855 88999999 99999999998754
No 54
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=99.95 E-value=1.1e-27 Score=243.41 Aligned_cols=192 Identities=20% Similarity=0.226 Sum_probs=146.2
Q ss_pred ccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCcc
Q 005894 5 NCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSEA 84 (671)
Q Consensus 5 ~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~~ 84 (671)
...+..+||||||+||||++||+||.+|+|+||+ +|. +.++|++||++++++ .|+. +.
T Consensus 23 ~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~~------------------~~~-i~~lt~~el~~l~~~-~~~~--~~ 80 (229)
T cd08562 23 AELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNG------------------SGA-VTELTWAELAQLDAG-SWFS--PE 80 (229)
T ss_pred HHcCCCEEEEEEeECCCCCEEEEcCCCCccccCC------------------Cce-eecCcHHHHhhcCCC-cccC--CC
Confidence 3456779999999999999999999999999999 888 999999999999987 4443 34
Q ss_pred CCCCCCCCChhhhhHHHHH-hc------C------ccHHHHHHHHHHHcC-C-ceEEEeCCChHHHHHhhhhcCCCCcce
Q 005894 85 FDNTQPIPTPDTIYDLFYS-QH------N------ISAAKYITEYLQKLI-S-NVYYISSPEIGFLKTMDRKVDHNTTKL 149 (671)
Q Consensus 85 f~~~~~IptL~ev~~~~~~-~~------~------~~~~~~v~~~l~~~~-~-~~~~isSf~~~~L~~i~~~~~~~~~~~ 149 (671)
|. +++||||+|+++.+.. .. + ..+++.+++++++++ . ++++++||++..|+.+++ ..| ..++
T Consensus 81 ~~-~~~iptl~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~~v~~~Sf~~~~l~~~~~-~~p-~~~~ 157 (229)
T cd08562 81 FA-GEPIPTLADVLELARELGLGLNLEIKPDPGDEALTARVVAAALRELWPHASKLLLSSFSLEALRAARR-AAP-ELPL 157 (229)
T ss_pred CC-CCCCCCHHHHHHHHHhcCCEEEEEECCCCCccHHHHHHHHHHHHHhcCCcCCEEEECCCHHHHHHHHH-hCC-CCcE
Confidence 54 7899999999876532 11 1 135678899999998 3 889999999999999995 556 4777
Q ss_pred EEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCccc
Q 005894 150 VFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYS 229 (671)
Q Consensus 150 v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~ 229 (671)
.+.+... ...+.+++ ..+ .+.++.+....+ ..++|+.+|++|++|++||||++..
T Consensus 158 ~~l~~~~-------~~~~~~~~---~~~--~~~~~~~~~~~~------------~~~~v~~~~~~g~~v~~wTvn~~~~- 212 (229)
T cd08562 158 GLLFDTL-------PADWLELL---AAL--GAVSIHLNYRGL------------TEEQVKALKDAGYKLLVYTVNDPAR- 212 (229)
T ss_pred EEEecCC-------CcCHHHHH---HHc--CCeEEecChhhC------------CHHHHHHHHHCCCEEEEEeCCCHHH-
Confidence 7643211 11122221 111 144454443332 2589999999999999999998754
Q ss_pred CCCCCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 230 SYSYNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 230 ~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
+..+++.| ||||+||+|
T Consensus 213 -----------~~~~~~~g---VdgiiTD~p 229 (229)
T cd08562 213 -----------AAELLEWG---VDAIFTDRP 229 (229)
T ss_pred -----------HHHHHHCC---CCEEEcCCC
Confidence 88999999 999999998
No 55
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=99.95 E-value=9.6e-28 Score=247.09 Aligned_cols=196 Identities=15% Similarity=0.107 Sum_probs=143.5
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCC
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRS 82 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~ 82 (671)
.+...+..+||||||+||||++||+||.+|+||||+...+|+++ +|. +.++|++||++++++ +||..+
T Consensus 24 ~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~~~~~~----------~~~-v~~~T~~eL~~ld~g-~~f~~~ 91 (252)
T cd08574 24 KALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVADVFPERA----------HER-ASMFTWTDLQQLNAG-QWFLKD 91 (252)
T ss_pred HHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCccccccc----------ccc-hhcCCHHHHhhCCCC-CcccCC
Confidence 34456788999999999999999999999999999966666655 456 999999999999999 676421
Q ss_pred --------------ccCCCCCCCCChhhhhHHHHH-------hcC---------ccHHHHHHHHHHHcCC-ceEEEeCCC
Q 005894 83 --------------EAFDNTQPIPTPDTIYDLFYS-------QHN---------ISAAKYITEYLQKLIS-NVYYISSPE 131 (671)
Q Consensus 83 --------------~~f~~~~~IptL~ev~~~~~~-------~~~---------~~~~~~v~~~l~~~~~-~~~~isSf~ 131 (671)
..|. +++||||+|+++.+.. +.+ ..+++.+++++++++. ++++++||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~ 170 (252)
T cd08574 92 DPFWTASSLSESDREEAG-NQSIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYYQSYVNITLDTILASGIPQHQVFWLPD 170 (252)
T ss_pred CccchhcccccchhhhcC-CCCCCCHHHHHHHHHHcCCeEEEEecCCcccCccHHHHHHHHHHHHHHcCCCcccEEEccH
Confidence 1344 7999999999765432 112 1356789999999883 445555554
Q ss_pred hHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHH-hhceecCCCcceeecCCCCCCcCCCcHHHHH
Q 005894 132 IGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKS-FASGIVVPKSYIIPVNNKTRYLEPATTLVTD 210 (671)
Q Consensus 132 ~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ 210 (671)
. .++.++ +..| +.++.+. ... + ...++. -++++++....+ ..++|+.
T Consensus 171 ~-~~~~~~-~~~p-~~~~~~~--~~~---------~------~~~~~~~~~~~~~~~~~~~------------~~~~v~~ 218 (252)
T cd08574 171 E-YRALVR-KVAP-GFQQVSG--RKL---------P------VESLRENGISRLNLEYSQL------------SAQEIRE 218 (252)
T ss_pred H-HHHHHH-HHCC-CCeEeec--ccc---------c------hHHHHhcCCeEEccCcccC------------CHHHHHH
Confidence 4 378888 4666 4666541 110 0 111121 255665554433 2589999
Q ss_pred HHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeec
Q 005894 211 AHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITD 258 (671)
Q Consensus 211 ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td 258 (671)
+|++|++|++||||++.. ++++++.| ||||+||
T Consensus 219 ~~~~g~~v~~WTVn~~~~------------~~~l~~~G---VdgIiTD 251 (252)
T cd08574 219 YSKANISVNLYVVNEPWL------------YSLLWCSG---VQSVTTN 251 (252)
T ss_pred HHHCCCEEEEEccCCHHH------------HHHHHHcC---CCEEecC
Confidence 999999999999999854 88999999 9999998
No 56
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=99.95 E-value=1.3e-27 Score=246.02 Aligned_cols=197 Identities=15% Similarity=0.121 Sum_probs=144.3
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+...+..+||+|||+||||++||+||.+|+|+||+ +|. |.|+|++||++++++ .|++ .
T Consensus 31 A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~~------------------~~~-v~~~t~~el~~l~~~-~~~~--~ 88 (249)
T PRK09454 31 GARYGHRMIEFDAKLSADGEIFLLHDDTLERTSNG------------------WGV-AGELTWQDLAQLDAG-SWFS--A 88 (249)
T ss_pred HHHcCCCEEEEEeeECCCCCEEEECCCcccccCCC------------------CCc-hhhCCHHHHHhcCCC-CccC--C
Confidence 44567789999999999999999999999999999 888 999999999999998 5554 4
Q ss_pred cCCCCCCCCChhhhhHHHHH-------hcCc------cHHHHHHHHHHHc--C-CceEEEeCCChHHHHHhhhhcCCCCc
Q 005894 84 AFDNTQPIPTPDTIYDLFYS-------QHNI------SAAKYITEYLQKL--I-SNVYYISSPEIGFLKTMDRKVDHNTT 147 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~~~~~-------~~~~------~~~~~v~~~l~~~--~-~~~~~isSf~~~~L~~i~~~~~~~~~ 147 (671)
.|. +++||||+||++.+.. |.+. .+.+.+..+++.+ + .++++++||++..|+.+++ ..| ..
T Consensus 89 ~~~-~~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~SF~~~~l~~l~~-~~p-~~ 165 (249)
T PRK09454 89 AFA-GEPLPTLSQVAARCRAHGMAANIEIKPTTGREAETGRVVALAARALWAGAAVPPLLSSFSEDALEAARQ-AAP-EL 165 (249)
T ss_pred CCC-CCcCCCHHHHHHHHHhcCCEEEEEECCCCCcchhHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH-hCC-CC
Confidence 555 7999999999776532 1121 1223333444443 2 2578999999999999995 556 47
Q ss_pred ceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHh-hceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCC
Q 005894 148 KLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSF-ASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFAND 226 (671)
Q Consensus 148 ~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~ 226 (671)
++.+.+... ...+. ..++.. +.++.+....+ ...+|+.+|++|++|++||||++
T Consensus 166 ~~~~l~~~~-------~~~~~------~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~g~~v~~WTvn~~ 220 (249)
T PRK09454 166 PRGLLLDEW-------PDDWL------ELTRRLGCVSLHLNHKLL------------DEARVAALKAAGLRILVYTVNDP 220 (249)
T ss_pred cEEEEeccc-------cccHH------HHHHhcCCeEEecccccC------------CHHHHHHHHHCCCEEEEEeCCCH
Confidence 777643211 11111 112221 33344433222 35899999999999999999998
Q ss_pred cccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcccc
Q 005894 227 IYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATE 265 (671)
Q Consensus 227 ~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~ 265 (671)
.. ++++++.| ||||+||+|.....
T Consensus 221 ~~------------~~~l~~~G---VdgIiTD~p~~~~~ 244 (249)
T PRK09454 221 AR------------ARELLRWG---VDCICTDRIDLIGP 244 (249)
T ss_pred HH------------HHHHHHcC---CCEEEeCChHhcCc
Confidence 54 88999999 99999999997654
No 57
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.95 E-value=9.6e-28 Score=248.06 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=155.3
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCC--
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTR-- 81 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r-- 81 (671)
+...+.-+||||||+||||++||+||.+|+|+||+. .+|+ |.++|++||++++++ .|+..
T Consensus 24 A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~----------------~~g~-v~~~t~~el~~l~~~-~~~~~~~ 85 (256)
T cd08601 24 AREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIE----------------RPGP-VKDYTLAEIKQLDAG-SWFNKAY 85 (256)
T ss_pred HHHcCCCEEEEEeeECCCCeEEEeCCCccccccCCC----------------CCce-eecCcHHHHHhcCCC-ccccccC
Confidence 345577899999999999999999999999999982 1577 999999999999997 44431
Q ss_pred ----CccCCCCCCCCChhhhhHHHHHhc------C-----ccHHHHHHHHHHHcC-C------ceEEEeCCChHHHHHhh
Q 005894 82 ----SEAFDNTQPIPTPDTIYDLFYSQH------N-----ISAAKYITEYLQKLI-S------NVYYISSPEIGFLKTMD 139 (671)
Q Consensus 82 ----~~~f~~~~~IptL~ev~~~~~~~~------~-----~~~~~~v~~~l~~~~-~------~~~~isSf~~~~L~~i~ 139 (671)
+..+. +++||||+||++.+.... + ..+++.+.+++++++ . ++++|+||++..|+.++
T Consensus 86 ~~~~~~~~~-~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~ 164 (256)
T cd08601 86 PEYARESYS-GLKVPTLEEVIERYGGRANYYIETKSPDLYPGMEEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLH 164 (256)
T ss_pred ccccccccC-CccCCCHHHHHHHhccCceEEEEeeCCCCCCCHHHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHH
Confidence 11233 789999999976543321 1 247788999999987 3 68999999999999999
Q ss_pred hhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEE
Q 005894 140 RKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVY 219 (671)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~ 219 (671)
+ ..| ..++++.+..... .+... ..+..++.++.++.+....+ + .++|+.+|++|++|+
T Consensus 165 ~-~~p-~~~~~~l~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~---~---------~~~v~~~~~~g~~v~ 222 (256)
T cd08601 165 Q-LNP-NIPLVQLLWYGEG-----AETYD---KWLDEIKEYAIGIGPSIADA---D---------PWMVHLIHKKGLLVH 222 (256)
T ss_pred H-hCC-CCcEEEEeccCcc-----cccch---hHHHHHHhcCeEeCCchhhc---C---------HHHHHHHHHCCCEEE
Confidence 5 556 4788875432211 01111 12344455667776654333 2 589999999999999
Q ss_pred EeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCccccc
Q 005894 220 ASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEA 266 (671)
Q Consensus 220 ~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~ 266 (671)
+||||+.. ++.++++.| ||||+||+|......
T Consensus 223 ~wTvn~~~------------~~~~l~~~G---vd~IiTD~p~~~~~~ 254 (256)
T cd08601 223 PYTVNEKA------------DMIRLINWG---VDGMFTNYPDRLKEV 254 (256)
T ss_pred EEecCCHH------------HHHHHHhcC---CCEEEeCCHHHHHHh
Confidence 99999874 488999999 999999999876553
No 58
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=99.95 E-value=1.1e-27 Score=252.73 Aligned_cols=223 Identities=15% Similarity=0.201 Sum_probs=147.8
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHcccccccc-----
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQN----- 77 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~----- 77 (671)
.+...+..+||+|||+||||++||+||.+|+||||+ +|. |.|+|++||++++++..
T Consensus 49 ~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~~------------------~g~-V~~~t~~eL~~l~~~~~~~~~~ 109 (300)
T cd08612 49 HAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCGV------------------DKL-VSDLNYADLPPYLEKLEVTFSP 109 (300)
T ss_pred HHHHcCCCEEEEEeeECcCCeEEEECCccccccCCC------------------Ccc-cccCCHHHHhhccccccccccC
Confidence 345667889999999999999999999999999999 888 99999999999955321
Q ss_pred ccCCCccCCCCCCCCChhhhhHHHHH-----hcCc---cHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCCcc
Q 005894 78 VYTRSEAFDNTQPIPTPDTIYDLFYS-----QHNI---SAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNTTK 148 (671)
Q Consensus 78 ~~~r~~~f~~~~~IptL~ev~~~~~~-----~~~~---~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~~~ 148 (671)
++..+..|. +++||||+|+++.+.. |.+. .+++.+++++++++ .++++++||+++.|+.+++ ..| +.+
T Consensus 110 ~~~~~~~~~-g~~IPtL~EvL~~~~~~~lnIEiK~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~L~~~~~-~~p-~i~ 186 (300)
T cd08612 110 GDYCVPKGS-DRRIPLLEEVFEAFPDTPINIDIKVENDELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHK-ENP-NIP 186 (300)
T ss_pred CccccccCC-CCCCCCHHHHHHhCCCCeEEEEECCCchHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHH-hCC-Ccc
Confidence 111123454 8999999999765422 2222 36788999999998 6789999999999999995 667 477
Q ss_pred eEEEecCC--------CCcCCCC--CCCHHHHhhcHHHHHHhhce--ecCCCcceeecCCCCCCcCCCcHHHHHHHHcCC
Q 005894 149 LVFMVLEP--------NAVEPTT--NQTYGSILKNLTAIKSFASG--IVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGL 216 (671)
Q Consensus 149 ~v~~~~~~--------~~~~~~~--~~~y~~~~~~l~~i~~~a~~--i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl 216 (671)
+.+.+-.. ....+.. ..........-..++.+... ........++. .+.....++|+.+|++|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~G~ 262 (300)
T cd08612 187 LFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIFLKTYFPKSMSRLNRFVLFLI----DWLLMRPSLFRHLQKRGI 262 (300)
T ss_pred EEechHHHHHHHHHHHcccCccccCccccccccchhhhhhhcccccccccccceeccc----ccccCCHHHHHHHHHCCC
Confidence 76532100 0000000 00000000000000000000 00000001110 122234689999999999
Q ss_pred eEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCccccc
Q 005894 217 QVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEA 266 (671)
Q Consensus 217 ~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~ 266 (671)
+|++||||++.. |+++++.| ||||+||+|.....+
T Consensus 263 ~v~vWTVNd~~~------------~~~l~~~G---VdgIiTD~P~~l~~~ 297 (300)
T cd08612 263 QVYGWVLNDEEE------------FERAFELG---ADGVMTDYPTKLREF 297 (300)
T ss_pred EEEEeecCCHHH------------HHHHHhcC---CCEEEeCCHHHHHHH
Confidence 999999999854 89999999 999999999876543
No 59
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=99.95 E-value=3e-27 Score=239.80 Aligned_cols=194 Identities=18% Similarity=0.144 Sum_probs=142.3
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+...+..+||+|||+||||++||+||.+|+|+||+ +|. |.++|++||++++++
T Consensus 23 A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~------------------~g~-v~~~t~~eL~~l~~~-------- 75 (226)
T cd08568 23 AIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGV------------------DLK-VKELTYKELKKLHPG-------- 75 (226)
T ss_pred HHHcCcCEEEEEEEEcCCCCEEEECCCcccccCCC------------------Cce-eecCCHHHHhhCCCC--------
Confidence 34457789999999999999999999999999999 888 999999999999986
Q ss_pred cCCCCCCCCChhhhhHHHHHh------cC-ccHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCCcceEEEecC
Q 005894 84 AFDNTQPIPTPDTIYDLFYSQ------HN-ISAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNTTKLVFMVLE 155 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~~~~~~------~~-~~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~~~~v~~~~~ 155 (671)
+++||||+||++.+... .+ ....+.+++++++++ .++++++||++..|+.+++ ..| ..++.+.+..
T Consensus 76 ----g~~iPtL~evl~~~~~~~~l~iEiK~~~~~~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~-~~p-~~~~~~l~~~ 149 (226)
T cd08568 76 ----GELIPTLEEVFRALPNDAIINVEIKDIDAVEPVLEIVEKFNALDRVIFSSFNHDALRELRK-LDP-DAKVGLLIGE 149 (226)
T ss_pred ----CCcCCCHHHHHHhcCCCcEEEEEECCccHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHH-hCC-CCcEEEEeec
Confidence 68999999997765332 12 245678999999998 6799999999999999995 556 4777764422
Q ss_pred CCCcCCCCCCCHHHHhhcHHHHHH-hhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCCCCC
Q 005894 156 PNAVEPTTNQTYGSILKNLTAIKS-FASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSYSYN 234 (671)
Q Consensus 156 ~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~ 234 (671)
.... .... ...+. .+.++.++...+. .. .+. ...++|+.+|++|++|++||||++..
T Consensus 150 ~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~-~~---~~~-~~~~~v~~~~~~G~~v~~WTvn~~~~------ 207 (226)
T cd08568 150 EEEG-----FSIP------ELHEKLKLYSLHVPIDAIG-YI---GFE-KFVELLRLLRKLGLKIVLWTVNDPEL------ 207 (226)
T ss_pred cccc-----cCHH------HHHHhcCCcEeccchhhhc-cc---ccc-ccHHHHHHHHHCCCEEEEEcCCCHHH------
Confidence 1110 0000 11111 1334444432220 00 111 12589999999999999999998754
Q ss_pred CChHHHHHHHhhcCceeeeeEeecCCCc
Q 005894 235 FEPEAEYLTFIDNSQFAVDGFITDFPTT 262 (671)
Q Consensus 235 ~d~~~e~~~~i~~g~~~Vdgv~td~p~~ 262 (671)
++++.+ + ||||+||+|..
T Consensus 208 ------~~~l~~-~---vdgiiTD~p~~ 225 (226)
T cd08568 208 ------VPKLKG-L---VDGVITDDVEK 225 (226)
T ss_pred ------HHHHHh-h---CCEEEccCccc
Confidence 667654 5 99999999975
No 60
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=99.94 E-value=2.9e-27 Score=244.28 Aligned_cols=204 Identities=19% Similarity=0.158 Sum_probs=146.2
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+...+..+||||||+||||++||+||.+|+|+||+ +|. |.|+|++||++++++ .++....
T Consensus 22 A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~~------------------~g~-v~~~t~~el~~l~~~-~~~~~~~ 81 (258)
T cd08573 22 AKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDG------------------TGL-VAELTWEELRKLNAA-AKHRLSS 81 (258)
T ss_pred HHHcCCCEEEEEeeECCCCcEEEECCCCcceecCC------------------Cce-EecCcHHHHhhCCCC-CCCCCcc
Confidence 34567889999999999999999999999999999 888 999999999999998 4554334
Q ss_pred cCCCCCCCCChhhhhHHHHH-h------cC---ccHHHHHHHHHHHcC--CceEEEeCCChHHHHHhhhhcCCCCcceEE
Q 005894 84 AFDNTQPIPTPDTIYDLFYS-Q------HN---ISAAKYITEYLQKLI--SNVYYISSPEIGFLKTMDRKVDHNTTKLVF 151 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~~~~~-~------~~---~~~~~~v~~~l~~~~--~~~~~isSf~~~~L~~i~~~~~~~~~~~v~ 151 (671)
.|. +++||||+|+++.+.. . .+ ..+++.+++++++++ .++++|+||++..|+.+++ ..| +.++.+
T Consensus 82 ~~~-~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~v~~~l~~~~~~~~~v~v~SF~~~~l~~~~~-~~p-~~~~g~ 158 (258)
T cd08573 82 RFP-GEKIPTLEEAVKECLENNLRMIFDVKSNSSKLVDALKNLFKKYPGLYDKAIVCSFNPIVIYKVRK-ADP-KILTGL 158 (258)
T ss_pred ccC-CCCCCCHHHHHHHHHhcCCEEEEEeCCCcHHHHHHHHHHHHHCCCccCCEEEEECCHHHHHHHHH-hCC-CceEEE
Confidence 566 7999999999765532 1 12 146678899999887 3689999999999999995 666 477775
Q ss_pred EecCCCCcCCC----CCC---CHHHHhh-cHHHHH-----------HhhceecCCCcceeecCCCCCCcCCCcHHHHHHH
Q 005894 152 MVLEPNAVEPT----TNQ---TYGSILK-NLTAIK-----------SFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAH 212 (671)
Q Consensus 152 ~~~~~~~~~~~----~~~---~y~~~~~-~l~~i~-----------~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah 212 (671)
.+ ........ ..+ .+..... .+..+. .-++++.+....+ ...+|+.+|
T Consensus 159 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~v~~~~ 225 (258)
T cd08573 159 TW-RPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLPYFLGVSALLIHKDDI------------SSAYVRYWR 225 (258)
T ss_pred ec-CcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhhhhhcCeeEEEechHhc------------CHHHHHHHH
Confidence 43 11100000 001 0111100 011111 1133343333322 358999999
Q ss_pred HcCCeEEEeeecCCcccCCCCCCChHHHHHHHhh-cCceeeeeEeecC
Q 005894 213 NAGLQVYASGFANDIYSSYSYNFEPEAEYLTFID-NSQFAVDGFITDF 259 (671)
Q Consensus 213 ~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~-~g~~~Vdgv~td~ 259 (671)
++|++|++||||++.. ++++++ .| || ||||+
T Consensus 226 ~~G~~v~vWTVn~~~~------------~~~l~~~~G---Vd-iiTD~ 257 (258)
T cd08573 226 ARGIRVIAWTVNTPTE------------KQYFAKTLN---VP-YITDS 257 (258)
T ss_pred HCCCEEEEEecCCHHH------------HHHHHHHhC---CC-eecCC
Confidence 9999999999999854 889999 99 99 99996
No 61
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.94 E-value=6.9e-27 Score=238.30 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=149.3
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+...+..+||||||+||||++||+||.+|+|+||+ +|. +.++|++||++++++ .++. .
T Consensus 22 A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~------------------~~~-i~~~t~~el~~l~~~-~~~~--~ 79 (233)
T cd08582 22 AWEQGADGIETDVRLTKDGELVCVHDPTLKRTSGG------------------DGA-VSDLTLAELRKLDIG-SWKG--E 79 (233)
T ss_pred HHHcCCCEEEEEEEEccCCCEEEecCCccccccCC------------------Ccc-hhhCCHHHHhcCCCC-cccC--C
Confidence 34567789999999999999999999999999999 888 999999999999998 3433 3
Q ss_pred cCCCCCCCCChhhhhHHHHH-hc------C-----ccHHHHHHHHHHHcC--CceEEEeCCChHHHHHhhhhcCCCCcce
Q 005894 84 AFDNTQPIPTPDTIYDLFYS-QH------N-----ISAAKYITEYLQKLI--SNVYYISSPEIGFLKTMDRKVDHNTTKL 149 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~~~~~-~~------~-----~~~~~~v~~~l~~~~--~~~~~isSf~~~~L~~i~~~~~~~~~~~ 149 (671)
.|. +++||||+|+++.+.. .. + ..+.+.+++++++++ .++++++||++..|+.+++ ..| +.++
T Consensus 80 ~~~-~~~iptL~evl~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~-~~p-~~~~ 156 (233)
T cd08582 80 SYK-GEKVPTLEEYLAIVPKYGKKLFIEIKHPRRGPEAEEELLKLLKESGLLPEQIVIISFDAEALKRVRE-LAP-TLET 156 (233)
T ss_pred CCC-CCcCCCHHHHHHHHHhcCceEEEEeCCCccCccHHHHHHHHHHHcCCCCCCEEEEecCHHHHHHHHH-HCC-CCcE
Confidence 454 7999999999765533 11 2 246788999999995 5899999999999999995 556 4777
Q ss_pred EEEecCCCCcCCCCCCCHHHHhhcHHHHH-HhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcc
Q 005894 150 VFMVLEPNAVEPTTNQTYGSILKNLTAIK-SFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIY 228 (671)
Q Consensus 150 v~~~~~~~~~~~~~~~~y~~~~~~l~~i~-~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~ 228 (671)
.|......... .. . ..++ ..+.++.+.... + ...++|+.+|++|++|++||||++..
T Consensus 157 ~~l~~~~~~~~--~~---~------~~~~~~~~~~i~~~~~~--~---------~~~~~v~~~~~~G~~v~~wTvn~~~~ 214 (233)
T cd08582 157 LWLRNYKSPKE--DP---R------PLAKSGGAAGLDLSYEK--K---------LNPAFIKALRDAGLKLNVWTVDDAED 214 (233)
T ss_pred EEEeccCcccc--ch---h------HHHHhhCceEEcccccc--c---------CCHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 77532211000 00 0 0111 225666654332 1 12589999999999999999998854
Q ss_pred cCCCCCCChHHHHHHHhhcCceeeeeEeecCCC
Q 005894 229 SSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPT 261 (671)
Q Consensus 229 ~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~ 261 (671)
++++++.| ||||+||+|.
T Consensus 215 ------------~~~l~~~G---Vdgi~TD~p~ 232 (233)
T cd08582 215 ------------AKRLIELG---VDSITTNRPG 232 (233)
T ss_pred ------------HHHHHHCC---CCEEEcCCCC
Confidence 88999999 9999999996
No 62
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=99.94 E-value=3.6e-26 Score=238.35 Aligned_cols=236 Identities=14% Similarity=0.123 Sum_probs=173.9
Q ss_pred hHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccccccCCHHHHhccCCCcC
Q 005894 286 TDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFDLTWTEIQSLKPQIS 365 (671)
Q Consensus 286 Tl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~dlT~~EL~~L~~~~~ 365 (671)
...+|..|.++|||+||+|||+||||+|||+||.++.|+ + +.+ .|.++||+||++++.+.
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~-----------------~~~-~V~dlTleqL~~l~~~~- 76 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-G-----------------IKL-LVSDLTAEQLESILDYS- 76 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-C-----------------CcE-EeecCcHHHHhccCCcc-
Confidence 467999999999999999999999999999999999665 4 455 89999999999998762
Q ss_pred CCCCCCCCCCCCC---cccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhc----------CCcHHHHHHHHHH
Q 005894 366 SPFDKSNPPIIRN---PEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKK----------GLGVVDAVTKALS 432 (671)
Q Consensus 366 ~~f~~~~~~~~r~---~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~----------~~~~~~~v~~~l~ 432 (671)
+++... ..... ..+ .++++|||+|+|+.++.. ++++||||.+....... -..+++.+++.+-
T Consensus 77 -~~~~~~-~~~~~~~~~~~-~~~~~pTL~evL~~lp~~--iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf 151 (300)
T cd08578 77 -LDDLNS-EISDMVDLKRL-LSSRVVSLETLLELLPPS--IQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVF 151 (300)
T ss_pred -cccccc-cccccchhhhh-cCCcCCCHHHHHHhhccC--CeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHH
Confidence 222100 00000 011 257899999999999775 79999999887642111 1247788888876
Q ss_pred hcCCC----CCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecc--------------------------cCCCChhHH
Q 005894 433 NATFD----KQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKE--------------------------VSAAPREVV 481 (671)
Q Consensus 433 ~~~~~----~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~--------------------------~~d~~~~~l 481 (671)
++... ....++|+|+|||++++..++.+ |.||+.|++... ..|.+...+
T Consensus 152 ~har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si 231 (300)
T cd08578 152 DHARYLRHTPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSI 231 (300)
T ss_pred HHhhhhcccCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhH
Confidence 65321 01127999999999999999988 999999988764 233455678
Q ss_pred HHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEE
Q 005894 482 EEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITT 561 (671)
Q Consensus 482 ~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiT 561 (671)
++..+||...++- .+.... ..+...+.+|+.+|++||.+.+|+-..+. ........||||++.
T Consensus 232 ~~Av~fA~~~nL~--Giv~~~-~~L~~~P~lV~~ik~~GL~lv~~g~~~~~--------------~~~~~~~~~vnG~~~ 294 (300)
T cd08578 232 KEAVRFAKNNNLL--GLILPY-SLLNIVPQLVESIKSRGLLLIASGEPESL--------------IEVAEAGDGINGVVT 294 (300)
T ss_pred HHHHHHHHHcCCc--EEEecH-HHHhhChHHHHHHHHcCCEEEEECCCCcc--------------ccccccccCCceEEe
Confidence 8888999877663 333332 12456789999999999999999976432 111224789999999
Q ss_pred CC
Q 005894 562 EF 563 (671)
Q Consensus 562 D~ 563 (671)
+.
T Consensus 295 ~~ 296 (300)
T cd08578 295 ED 296 (300)
T ss_pred CC
Confidence 86
No 63
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.94 E-value=6.2e-27 Score=238.62 Aligned_cols=196 Identities=20% Similarity=0.162 Sum_probs=144.1
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+...+..+||+|||+||||++||+||.+|+|+|++ +|. |.++|++||++++++. |+
T Consensus 22 A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~~------------------~g~-v~~~t~~el~~l~~~~-~~---- 77 (235)
T cd08565 22 ALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTHG------------------TGA-VRDLTLAERKALRLRD-SF---- 77 (235)
T ss_pred HHHcCCCEEEEeEEEccCCCEEEECCChhhcccCC------------------CCc-eeeccHHHHhcCCCCC-CC----
Confidence 34556779999999999999999999999999999 888 9999999999999983 32
Q ss_pred cCCCCCCCCChhhhhHHHHH-h------cCc--------cHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCCc
Q 005894 84 AFDNTQPIPTPDTIYDLFYS-Q------HNI--------SAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNTT 147 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~~~~~-~------~~~--------~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~~ 147 (671)
+++||||+|+++.+.. . .+. .+++.+++++++++ .++++++||++..|+.+++ . | ..
T Consensus 78 ----~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~i~~~~~~~~v~~~Sf~~~~l~~~~~-~-p-~~ 150 (235)
T cd08565 78 ----GEKIPTLEEVLALFAPSGLELHVEIKTDADGTPYPGAAALAAATLRRHGLLERSVLTSFDPAVLTEVRK-H-P-GV 150 (235)
T ss_pred ----CCCCCCHHHHHHHhhccCcEEEEEECCCCCCCccHHHHHHHHHHHHhCCCcCCEEEEECCHHHHHHHHh-C-C-CC
Confidence 5899999999776532 1 121 36678899999988 5789999999999999995 5 6 48
Q ss_pred ceEEEecCCCCcCCCCCCCHHHHhhcHHHH-HHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCC
Q 005894 148 KLVFMVLEPNAVEPTTNQTYGSILKNLTAI-KSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFAND 226 (671)
Q Consensus 148 ~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i-~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~ 226 (671)
++.+.+. ......... +. .+... +..+.++.++..+. .....+|+.+|+ |++|++||||++
T Consensus 151 ~~~~l~~-~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~-g~~v~~WTVn~~ 212 (235)
T cd08565 151 RTLGSVD-EDMLERLGG--EL----PFLTATALKAHIVAVEQSLL----------AATWELVRAAVP-GLRLGVWTVNDD 212 (235)
T ss_pred cEEEEec-ccccccccc--cc----chhhhhhccCcEEccCcccc----------cCCHHHHHHHhC-CCEEEEEccCCH
Confidence 8876432 111100000 00 00111 12244444443321 112578999974 999999999987
Q ss_pred cccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcc
Q 005894 227 IYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTA 263 (671)
Q Consensus 227 ~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~ 263 (671)
.. ++++++.| ||||+||+|..+
T Consensus 213 ~~------------~~~l~~~G---VdgIiTD~P~~~ 234 (235)
T cd08565 213 SL------------IRYWLACG---VRQLTTDRPDLA 234 (235)
T ss_pred HH------------HHHHHHcC---CCEEEeCCcccc
Confidence 55 88999999 999999999863
No 64
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=99.94 E-value=1.3e-26 Score=235.79 Aligned_cols=192 Identities=21% Similarity=0.271 Sum_probs=146.5
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+.-.+..+||||||+||||++||+||.+|+|+||+ +|. +.++|++||+++++++. ++ +
T Consensus 24 A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~~------------------~~~-i~~~t~~el~~l~~~~~-~~--~ 81 (230)
T cd08563 24 AIEAGADGIELDVHLTKDGQLVVIHDETVDRTTNG------------------KGY-VKDLTLEELKKLDAGSW-FD--E 81 (230)
T ss_pred HHHcCCCEEEEEeeEcCCCCEEEECCCCcccccCC------------------CCc-hhhCCHHHHHhcCCCCc-cC--c
Confidence 34456779999999999999999999999999999 788 99999999999999843 32 2
Q ss_pred cCCCCCCCCChhhhhHHHHHh-c------C------ccHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCCcce
Q 005894 84 AFDNTQPIPTPDTIYDLFYSQ-H------N------ISAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNTTKL 149 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~~~~~~-~------~------~~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~~~~ 149 (671)
.+. +++||||+|++..+... . + .++++.+++++++++ .++++++||+...|+.+++ ..| ..++
T Consensus 82 ~~~-~~~iptL~evl~~~~~~~~~l~leiK~~~~~~~~~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~-~~p-~~~~ 158 (230)
T cd08563 82 KFT-GEKIPTLEEVLDLLKDKDLLLNIEIKTDVIHYPGIEKKVLELVKEYNLEDRVIFSSFNHESLKRLKK-LDP-KIKL 158 (230)
T ss_pred cCC-CCcCCCHHHHHHHHHhcCcEEEEEECCCCCcChhHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHH-HCC-CCcE
Confidence 343 68999999997755421 1 2 246788999999998 6899999999999999995 556 4777
Q ss_pred EEEecCCCCcCCCCCCCHHHHhhcHHHHHHh-hceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcc
Q 005894 150 VFMVLEPNAVEPTTNQTYGSILKNLTAIKSF-ASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIY 228 (671)
Q Consensus 150 v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~ 228 (671)
.+.+... . . . ...+++.. +.++.+....+ ..++++.+|++|++|++||||++..
T Consensus 159 ~~l~~~~-~-~-----~------~~~~~~~~~~~~v~~~~~~~------------~~~~i~~~~~~g~~v~~Wtvn~~~~ 213 (230)
T cd08563 159 ALLYETG-L-Q-----D------PKDYAKKIGADSLHPDFKLL------------TEEVVEELKKRGIPVRLWTVNEEED 213 (230)
T ss_pred EEEecCc-c-c-----C------HHHHHHHhCCEEEccCchhc------------CHHHHHHHHHCCCEEEEEecCCHHH
Confidence 7643211 0 0 0 01222221 34555443332 3589999999999999999998754
Q ss_pred cCCCCCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 229 SSYSYNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 229 ~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
++++++.| ||||+||+|
T Consensus 214 ------------~~~~~~~G---Vdgi~TD~P 230 (230)
T cd08563 214 ------------MKRLKDLG---VDGIITNYP 230 (230)
T ss_pred ------------HHHHHHCC---CCEEeCCCC
Confidence 88999999 999999998
No 65
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=99.94 E-value=1.2e-26 Score=234.55 Aligned_cols=185 Identities=20% Similarity=0.255 Sum_probs=143.4
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+...+..+||||||+||||++||+||.+|+|+||+ +|. +.++|++||+++++++ +
T Consensus 22 A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~~------------------~~~-v~~~t~~el~~l~~~~-~----- 76 (220)
T cd08579 22 AIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAGV------------------NKK-VWDLTLEELKKLTIGE-N----- 76 (220)
T ss_pred HHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccCC------------------CCC-hhhCCHHHHhcCcCcc-C-----
Confidence 33457779999999999999999999999999999 787 9999999999999983 2
Q ss_pred cCCCCCCCCChhhhhHHHHH-hc------C------ccHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCCcce
Q 005894 84 AFDNTQPIPTPDTIYDLFYS-QH------N------ISAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNTTKL 149 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~~~~~-~~------~------~~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~~~~ 149 (671)
|. +++||||+|+++.+.. .. + ..+.+.+++++++++ .++++|+||+...++.+++ ..| +.++
T Consensus 77 -~~-~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~-~~p-~~~~ 152 (220)
T cd08579 77 -GH-GAKIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKK-LDP-KIKT 152 (220)
T ss_pred -CC-CCcCCCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHH-HCC-CCeE
Confidence 22 6899999999776543 21 1 136778899999988 5789999999999999985 556 4777
Q ss_pred EEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCccc
Q 005894 150 VFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYS 229 (671)
Q Consensus 150 v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~ 229 (671)
.+..... . . .+ ....++++.+....+ ..++|+.+|++|++|++||||++.
T Consensus 153 ~~~~~~~-~-~------------~~--~~~~~~~~~~~~~~~------------~~~~v~~~~~~G~~v~~wtvn~~~-- 202 (220)
T cd08579 153 GYILPFN-I-G------------NL--PKTNVDFYSIEYSTL------------NKEFIRQAHQNGKKVYVWTVNDPD-- 202 (220)
T ss_pred EEEEecc-c-C------------cc--cccCceEEeeehhhc------------CHHHHHHHHHCCCEEEEEcCCCHH--
Confidence 7643211 0 0 00 012245555443322 258999999999999999999874
Q ss_pred CCCCCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 230 SYSYNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 230 ~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
++..++++| ||||+||+|
T Consensus 203 ----------~~~~~~~~G---vd~i~TD~P 220 (220)
T cd08579 203 ----------DMQRYLAMG---VDGIITDYP 220 (220)
T ss_pred ----------HHHHHHHcC---CCEEeCCCC
Confidence 488999999 999999998
No 66
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=99.94 E-value=1.2e-26 Score=244.57 Aligned_cols=202 Identities=14% Similarity=0.111 Sum_probs=144.3
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCC
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRS 82 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~ 82 (671)
.+...|..+||||||+||||++||+||.+|+||||+...++++. . +.|.|+|++||++++++ +||...
T Consensus 49 ~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g~~~~~~----------~-~~V~dlTlaEL~~ld~g-~wf~~~ 116 (315)
T cd08609 49 KSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKDVFPGRD----------A-AGSNNFTWTELKTLNAG-SWFLER 116 (315)
T ss_pred HHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCCCccccc----------c-ccHhhCCHHHHhhCCCC-cccCcc
Confidence 34456788999999999999999999999999999933222211 1 13899999999999998 666421
Q ss_pred c--------------cCCCCCCCCChhhhhHHHHH-------hcC---------ccHHHHHHHHHHHcCC--ceEEEeCC
Q 005894 83 E--------------AFDNTQPIPTPDTIYDLFYS-------QHN---------ISAAKYITEYLQKLIS--NVYYISSP 130 (671)
Q Consensus 83 ~--------------~f~~~~~IptL~ev~~~~~~-------~~~---------~~~~~~v~~~l~~~~~--~~~~isSf 130 (671)
. .| .+++||||+|+++.+.. |.+ .+++..+++++++++. .++++ +
T Consensus 117 ~~~~~~~~~~~~~~~~~-~ge~IPTL~EvL~~~~~~~~~l~IEIK~~~~~~~~~~~f~~~vl~~i~~~~~~~~~v~~--~ 193 (315)
T cd08609 117 RPFWTLSSLSEEDRREA-DNQTVPSLSELLDLAKKHNVSIMFDLRNENNSHVFYSSFVFYTLETILKLGIPPDKVWW--L 193 (315)
T ss_pred ccccccccccccccccc-CCCCCCCHHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHHHHHcCCCcceEEE--e
Confidence 1 12 37999999999665422 222 1356788899999882 33333 4
Q ss_pred ChHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHH
Q 005894 131 EIGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTD 210 (671)
Q Consensus 131 ~~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ 210 (671)
+...|+.+++ ..| ..++++... ....+..+.++++....+ ...+|+.
T Consensus 194 ~~~~l~~~~~-~~P-~~~~~~~~~-------------------~~~~~~~~~~i~~~~~~l------------~~~~v~~ 240 (315)
T cd08609 194 PDEYRHDVMK-MEP-GFKQVYGRQ-------------------KEMLMDGGNFMNLPYQDL------------SALEIKE 240 (315)
T ss_pred CHHHHHHHHH-hCc-Cceeecccc-------------------hhhHhcCCeEEecccccC------------CHHHHHH
Confidence 6888999984 556 366654210 000112244555443333 2589999
Q ss_pred HHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcccccc
Q 005894 211 AHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEAI 267 (671)
Q Consensus 211 ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~i 267 (671)
+|++|++|++||||++.. ++++++.| ||||+||+|......+
T Consensus 241 ~~~~G~~v~vWTVNd~~~------------~~~l~~~G---VDgIiTD~P~~l~~~~ 282 (315)
T cd08609 241 LRKDNVSVNLWVVNEPWL------------FSLLWCSG---VSSVTTNACQLLKDMS 282 (315)
T ss_pred HHHCCCEEEEECCCCHHH------------HHHHHhcC---CCEEEcCCHHHHHHhh
Confidence 999999999999998855 89999999 9999999999877644
No 67
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=99.94 E-value=1.1e-26 Score=241.07 Aligned_cols=216 Identities=20% Similarity=0.186 Sum_probs=143.5
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCC-
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRS- 82 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~- 82 (671)
+...+..+||||||+||||++||+||.+|+|+||+ +|. +.++|++||++++++. ++...
T Consensus 24 A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~------------------~~~-v~~~t~~el~~l~~~~-~~~~~~ 83 (264)
T cd08575 24 AVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTGG------------------SGL-VSDLTYAELPPLDAGY-GYTFDG 83 (264)
T ss_pred HHHcCCCEEEEEEEECCCCCEEEEcCCcccceeCC------------------ceE-EecCCHHHHHhcccCC-ccccCC
Confidence 44567789999999999999999999999999999 788 9999999999999983 43211
Q ss_pred ------ccCCCCCCCCChhhhhHHHHH-----hcC----ccHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCC
Q 005894 83 ------EAFDNTQPIPTPDTIYDLFYS-----QHN----ISAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNT 146 (671)
Q Consensus 83 ------~~f~~~~~IptL~ev~~~~~~-----~~~----~~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~ 146 (671)
..| .+++||||+|+++.+.. +.+ ..+++.+++++++++ .++++++||++..|+++++ ..| +
T Consensus 84 ~~~~~~~~~-~~~~iptL~evl~~~~~~~l~iEiK~~~~~~~~~~v~~~i~~~~~~~~~~~~Sf~~~~l~~~~~-~~p-~ 160 (264)
T cd08575 84 GKTGYPRGG-GDGRIPTLEEVFKAFPDTPINIDIKSPDAEELIAAVLDLLEKYKREDRTVWGSTNPEYLRALHP-ENP-N 160 (264)
T ss_pred CCcccccCC-CCCcCCcHHHHHHhCCCCeEEEEECCCCHHHHHHHHHHHHHhccccceEEEEeCCHHHHHHHHH-hCc-c
Confidence 112 37899999999765422 122 236788999999998 6789999999999999995 555 3
Q ss_pred cceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCccee-------ecCCCCCCcCCCcHHHHHHHHcCCeEE
Q 005894 147 TKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYII-------PVNNKTRYLEPATTLVTDAHNAGLQVY 219 (671)
Q Consensus 147 ~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~-------p~~~~~~y~~~~~~~V~~ah~~Gl~V~ 219 (671)
.++.+.+...-....... +..... ....+..+.++.+....+. -.. -.|.....++|+.+|++|++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~G~~v~ 235 (264)
T cd08575 161 LFESFSMTRCLLLYLALG--YTGLLP-FVPIKESFFEIPRPVIVLETFTLGEGASI--VAALLWWPNLFDHLRKRGIQVY 235 (264)
T ss_pred cccccCchhHHHHHHHhh--eeccCC-CCCCCceEEEeecccEEEEEeccccccch--hhhhhcCHHHHHHHHhcCCcEE
Confidence 444432100000000000 000000 0000000111111110000 000 0222334689999999999999
Q ss_pred EeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCc
Q 005894 220 ASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTT 262 (671)
Q Consensus 220 ~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~ 262 (671)
+||||++.. ++++++.| ||||+||+|..
T Consensus 236 vWTVNd~~~------------~~~l~~~G---VdgIiTD~P~~ 263 (264)
T cd08575 236 LWVLNDEED------------FEEAFDLG---ADGVMTDSPTK 263 (264)
T ss_pred EEEECCHHH------------HHHHHhcC---CCEEEeCCccc
Confidence 999999855 88999999 99999999975
No 68
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=99.94 E-value=1.6e-26 Score=245.98 Aligned_cols=203 Identities=12% Similarity=0.064 Sum_probs=145.2
Q ss_pred cccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCC
Q 005894 2 AKSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTR 81 (671)
Q Consensus 2 ~~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r 81 (671)
..+...+..+||||||+||||++||+||.+|+||||+...+++++.+ .+.++||+||++++++ .||..
T Consensus 23 ~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g~v~~~~~~-----------~~~~~TlaEL~~LdaG-~wf~~ 90 (351)
T cd08608 23 QKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDRVFPERQYE-----------DASMFNWTDLERLNAG-QWFLK 90 (351)
T ss_pred HHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCCcccccccc-----------ccccCCHHHHhhCCCC-ccccc
Confidence 34456688899999999999999999999999999995555554421 2679999999999999 56642
Q ss_pred C--------------ccCCCCCCCCChhhhhHHHHH-------hcC---------ccHHHHHHHHHHHcC--CceEEEeC
Q 005894 82 S--------------EAFDNTQPIPTPDTIYDLFYS-------QHN---------ISAAKYITEYLQKLI--SNVYYISS 129 (671)
Q Consensus 82 ~--------------~~f~~~~~IptL~ev~~~~~~-------~~~---------~~~~~~v~~~l~~~~--~~~~~isS 129 (671)
. ..|. +++||||+||++.+.. +++ ..+++.+++++++++ .++++++|
T Consensus 91 ~~p~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~~~~l~iEIK~~~~~~~~~~~~~~~v~~~i~~~~~~~~~vi~sS 169 (351)
T cd08608 91 DDPFWTAQSLSPSDRKEAG-NQSVCSLAELLELAKRYNASVLLNLRRPPPNHPYHQSWINLTLKTILASGIPQEQVMWTP 169 (351)
T ss_pred CCccccccccccccccccC-CCCCCCHHHHHHHHHhcCCeEEEEECCCcccCcchhHHHHHHHHHHHHhCCCcCeEEEEc
Confidence 1 1333 7999999999765432 112 134567788888877 25677788
Q ss_pred CChHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHH-hhceecCCCcceeecCCCCCCcCCCcHHH
Q 005894 130 PEIGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKS-FASGIVVPKSYIIPVNNKTRYLEPATTLV 208 (671)
Q Consensus 130 f~~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~i~p~~~~~~y~~~~~~~V 208 (671)
|+. ++.++ +..|. .++.. ... ..+..++. -++++++....+ ..++|
T Consensus 170 f~~--~~~vr-~l~P~-~~~~~--~~~---------------~~~~~~~~~~~~~l~~~~~~l------------t~~~v 216 (351)
T cd08608 170 DWQ--RKLVR-KVAPG-FQQTS--GEK---------------LPVASLRERGITRLNLRYTQA------------SAQEI 216 (351)
T ss_pred chH--HHHHH-HHCCC-Ceeec--ccc---------------chHHHHHHcCCeEEccchhhc------------CHHHH
Confidence 866 46777 46663 54321 000 00112221 245565554433 25899
Q ss_pred HHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcccc
Q 005894 209 TDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATE 265 (671)
Q Consensus 209 ~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~ 265 (671)
+.+|++|++|++||||++.. |+.+++.| ||||+||+|.....
T Consensus 217 ~~~~~~Gl~V~vWTVN~~~~------------~~~l~~~G---VdgIiTD~P~~l~~ 258 (351)
T cd08608 217 RDYSASNLSVNLYTVNEPWL------------YSLLWCSG---VPSVTSDASHVLRK 258 (351)
T ss_pred HHHHHCCCEEEEEecCCHHH------------HHHHHHCC---CCEEEECCHHHHHH
Confidence 99999999999999999855 88999999 99999999998776
No 69
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=99.94 E-value=9.5e-27 Score=243.97 Aligned_cols=211 Identities=16% Similarity=0.113 Sum_probs=143.7
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccC--
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYT-- 80 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~-- 80 (671)
.+...+..+||+|||+||||++||+||.+|+|+||+. ..+|. |.|+|++||++++++. |+.
T Consensus 33 ~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~---------------~~~~~-V~dlT~~EL~~ld~~~-~~~~~ 95 (282)
T cd08605 33 AASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGE---------------VESSR-IRDLTLAELKALGPQA-ESTKT 95 (282)
T ss_pred HHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCC---------------cCccc-hhhCcHHHHHhccccc-ccccc
Confidence 4456788999999999999999999999999999851 11566 9999999999999973 321
Q ss_pred ---------CCcc----C-CCCCCCCChhhhhHHHHH------hcCcc------------HHHHHHHHHHHcC-CceEEE
Q 005894 81 ---------RSEA----F-DNTQPIPTPDTIYDLFYS------QHNIS------------AAKYITEYLQKLI-SNVYYI 127 (671)
Q Consensus 81 ---------r~~~----f-~~~~~IptL~ev~~~~~~------~~~~~------------~~~~v~~~l~~~~-~~~~~i 127 (671)
..+. + +.+++||||+||++.+.. |.+.. +.+.+++++++++ .++++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~vii 175 (282)
T cd08605 96 STVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVRELRAILAVCKQHAPGRRIMF 175 (282)
T ss_pred CcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecCccccchHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 0010 1 136899999999664422 22211 2356788888887 578999
Q ss_pred eCCChHHHHHhhhhcCCCCcceEEEecCCC-CcCCCCCCCHHHHhhcHHHHHH-hhceecCCCcceeecCCCCCCcCCCc
Q 005894 128 SSPEIGFLKTMDRKVDHNTTKLVFMVLEPN-AVEPTTNQTYGSILKNLTAIKS-FASGIVVPKSYIIPVNNKTRYLEPAT 205 (671)
Q Consensus 128 sSf~~~~L~~i~~~~~~~~~~~v~~~~~~~-~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~i~p~~~~~~y~~~~~ 205 (671)
+||++..|+.+++ ..| ..++.+.+.... .........+.. ....++. .+.++.++...+ ....
T Consensus 176 sSF~~~~l~~l~~-~~p-~~~~~~L~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l----------~~~~ 240 (282)
T cd08605 176 SSFDPDAAVLLRA-LQS-LYPVMFLTDCGPYTHNDPRRNSIEA---AIQVALEGGLQGIVSEVKVL----------LRNP 240 (282)
T ss_pred EeCCHHHHHHHHh-cCc-cCCEEEEecCCCccccCchhhhHHH---HHHHHHHcCCceEEecHHHh----------hcCc
Confidence 9999999999994 667 488887542110 000000000111 1111122 245555443321 1125
Q ss_pred HHHHHHHHcCCeEEEeee--cCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 206 TLVTDAHNAGLQVYASGF--ANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 206 ~~V~~ah~~Gl~V~~wtv--~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
++|+.||++|++|++||| |++.. ++++++.| |||||||++
T Consensus 241 ~~v~~~~~~Gl~v~vWTv~~n~~~~------------~~~l~~~G---VdgIiTD~~ 282 (282)
T cd08605 241 TAVSLVKASGLELGTYGKLNNDAEA------------VERQADLG---VDGVIVDHV 282 (282)
T ss_pred HHHHHHHHcCcEEEEeCCCCCCHHH------------HHHHHHcC---CCEEEeCCC
Confidence 899999999999999999 76644 88999999 999999985
No 70
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=99.93 E-value=4.9e-26 Score=239.63 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=144.8
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccc--cccC
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQ--NVYT 80 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~--~~~~ 80 (671)
.+...+..+||||||+||||++||+||.+|+|+|++....++... .++. |.|+|++||++++++. .|+.
T Consensus 29 ~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~~~~~~--------~~~~-v~~lt~~eL~~l~~~~~~~~~~ 99 (290)
T cd08607 29 QAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDSDRDDL--------LEVP-VKDLTYEQLKLLKLFHISALKV 99 (290)
T ss_pred HHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccccCccce--------EEEe-cccCCHHHHhhcCccccccccc
Confidence 445678889999999999999999999999999998322222111 1234 9999999999999973 2332
Q ss_pred CCccCC---------CCCCCCChhhhhHHHHH------hcCc--------------------cHHHHHHHHHHHcC-Cce
Q 005894 81 RSEAFD---------NTQPIPTPDTIYDLFYS------QHNI--------------------SAAKYITEYLQKLI-SNV 124 (671)
Q Consensus 81 r~~~f~---------~~~~IptL~ev~~~~~~------~~~~--------------------~~~~~v~~~l~~~~-~~~ 124 (671)
..|. .+++||||+||++.+.. |.+. .+++.+++++++++ .++
T Consensus 100 --~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~lnIEiK~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 177 (290)
T cd08607 100 --KEYKSVEEDEDPPEHQPFPTLSDVLESVPEDVGFNIEIKWPQQQKDGSWESELFTYFDRNLFVDIILKIVLEHAGKRR 177 (290)
T ss_pred --ccccccccccccccccCCCCHHHHHHhCCCccceEEEEecCccccccccccccccccchhHHHHHHHHHHHHhCCCCC
Confidence 2222 26899999999654321 2221 14567888888876 568
Q ss_pred EEEeCCChHHHHHhhhhcCCCCcceEEEecCCCC-cCCCCCCCHHHHhhcHHHHHHh-hceecCCCcceeecCCCCCCcC
Q 005894 125 YYISSPEIGFLKTMDRKVDHNTTKLVFMVLEPNA-VEPTTNQTYGSILKNLTAIKSF-ASGIVVPKSYIIPVNNKTRYLE 202 (671)
Q Consensus 125 ~~isSf~~~~L~~i~~~~~~~~~~~v~~~~~~~~-~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~i~p~~~~~~y~~ 202 (671)
++|+||++..|+.++. ..| ..++.+.+..... ..+........+...+.+.+.. +.|+.++..+ +.
T Consensus 178 v~isSF~~~~l~~~~~-~~p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 245 (290)
T cd08607 178 IIFSSFDADICTMLRF-KQN-KYPVLFLTQGKTQRYPEFMDLRTRTFEIAVNFAQAEELLGVNLHSED----------LL 245 (290)
T ss_pred EEEEcCCHHHHHHHHH-hCc-CCCEEEEecCCCCccccccchHHHhHHHHHHHHHHcCCceeEechhh----------hh
Confidence 9999999999999995 556 4787765422110 0000000000111111111111 2334333222 22
Q ss_pred CCcHHHHHHHHcCCeEEEeee--cCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 203 PATTLVTDAHNAGLQVYASGF--ANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 203 ~~~~~V~~ah~~Gl~V~~wtv--~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
...++|+.+|++|++|++||| |++. +++++++.| ||||+||++
T Consensus 246 ~~~~~v~~~~~~Gl~v~~wTv~~n~~~------------~~~~l~~~G---VdgIiTD~~ 290 (290)
T cd08607 246 KDPSQIELAKSLGLVVFCWGDDLNDPE------------NRKKLKELG---VDGLIYDRI 290 (290)
T ss_pred cChHHHHHHHHcCCEEEEECCCCCCHH------------HHHHHHHcC---CCEEEecCC
Confidence 235899999999999999999 6654 488999999 999999975
No 71
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.93 E-value=3.7e-26 Score=237.37 Aligned_cols=206 Identities=15% Similarity=0.142 Sum_probs=148.5
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccc--------cccccccccccccccccCCcccccccccccCHHHHcccccc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNN--------ITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLV 75 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~Ldr--------tT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~ 75 (671)
+...+..+||+|||+||||++||+||.+++| ++++ +|. |.|+|++||++++++
T Consensus 29 A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~------------------~~~-v~~~t~~el~~l~~~ 89 (265)
T cd08564 29 ALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSG------------------FKN-INDLSLDEITRLHFK 89 (265)
T ss_pred HHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCCC------------------ccc-hhhCcHHHHhhcccC
Confidence 3446778999999999999999999987665 6666 777 999999999999998
Q ss_pred ccccCCCccC---CCCCCCCChhhhhHHHHHhc------C---ccHHHHHHHHHHHcC-CceEEEeCCCh-HHHHHhhhh
Q 005894 76 QNVYTRSEAF---DNTQPIPTPDTIYDLFYSQH------N---ISAAKYITEYLQKLI-SNVYYISSPEI-GFLKTMDRK 141 (671)
Q Consensus 76 ~~~~~r~~~f---~~~~~IptL~ev~~~~~~~~------~---~~~~~~v~~~l~~~~-~~~~~isSf~~-~~L~~i~~~ 141 (671)
.|+.....+ ..+++||||+||++.+.... + ..+++.+++++++++ .++++|+||++ +.|+.+++
T Consensus 90 -~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~l~iEiK~~~~~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~- 167 (265)
T cd08564 90 -QLFDEKPCGADEIKGEKIPTLEDVLVTFKDKLKYNIELKGREVGLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKA- 167 (265)
T ss_pred -cccccCcccccccCCccCCCHHHHHHHhccCcEEEEEeCCCchhHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHH-
Confidence 455321111 14799999999977653322 2 257789999999998 57999999999 99999985
Q ss_pred cCCCC--cceEEEecCCCCcCCCCCCCHHHHhhcHHHHHH-hhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeE
Q 005894 142 VDHNT--TKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKS-FASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQV 218 (671)
Q Consensus 142 ~~~~~--~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V 218 (671)
..|.. .++++.+..... + .+... +..++. .+.++.+...++ + ..+|+.+|++|++|
T Consensus 168 ~~~~~~~~~~~~l~~~~~~--~----~~~~~---~~~~~~~~~~~v~~~~~~~---~---------~~~v~~~~~~Gl~v 226 (265)
T cd08564 168 LRPNKLNVPIALLFNEVKS--P----SPLDF---LEQAKYYNATWVNFSYDFW---T---------EEFVKKAHENGLKV 226 (265)
T ss_pred hCcCCCCceEEEEecCCCC--c----ccccH---HHHHHhcCCceeeechhhh---h---------HHHHHHHHHcCCEE
Confidence 55521 677765432210 0 01111 122221 255565544433 2 48999999999999
Q ss_pred EEee----ecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCccccc
Q 005894 219 YASG----FANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEA 266 (671)
Q Consensus 219 ~~wt----v~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~ 266 (671)
++|| +|++ .++.++++.| ||||+||+|..+..+
T Consensus 227 ~~wT~~~~~n~~------------~~~~~l~~~G---vdgiiTD~p~~~~~~ 263 (265)
T cd08564 227 MTYFDEPVNDNE------------EDYKVYLELG---VDCICPNDPVLLVNF 263 (265)
T ss_pred EEecCCCCCCCH------------HHHHHHHHcC---CCEEEcCCHHHHHHh
Confidence 9999 3333 4588999999 999999999877653
No 72
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.93 E-value=6.8e-26 Score=238.10 Aligned_cols=220 Identities=16% Similarity=0.162 Sum_probs=147.4
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccC-C
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYT-R 81 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~-r 81 (671)
.+...+..+||||||+||||++||+||.+|+|+||+.+.++... | ..|+ |.|+|++||+++++++ |+. .
T Consensus 30 ~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~~~~~------g--~~~~-v~~lT~~eL~~l~~~~-~~~~~ 99 (293)
T cd08572 30 AAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTGSDEGE------L--IEVP-IHDLTLEQLKELGLQH-ISALK 99 (293)
T ss_pred HHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccccccCc------c--eeee-hhhCcHHHHHhccccc-ccccc
Confidence 34567889999999999999999999999999999844322110 0 1344 9999999999999984 421 1
Q ss_pred Ccc--------------CCCCCCCCChhhhhHHHHH------hcCc------------------cHHHHHHHHHHHcC-C
Q 005894 82 SEA--------------FDNTQPIPTPDTIYDLFYS------QHNI------------------SAAKYITEYLQKLI-S 122 (671)
Q Consensus 82 ~~~--------------f~~~~~IptL~ev~~~~~~------~~~~------------------~~~~~v~~~l~~~~-~ 122 (671)
.+. +..+++||||+||++.+.. |.+. .+++.+++++++++ .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~ 179 (293)
T cd08572 100 RKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKDLGFNIEIKYPQLLEDGEGELTPYFERNAFVDTILAVVFEHAGG 179 (293)
T ss_pred ccccccccccCCccccchhhccCCCCHHHHHHhCCCccceEEEEecCCccccccccccchHHHHHHHHHHHHHHHHhCCC
Confidence 110 1136899999999654422 1111 25678899999988 6
Q ss_pred ceEEEeCCChHHHHHhhhhcCCCCcceEEEecCCCCc-CCCCCCCHHHHhhcHHHHHHh-hceecCCCcceeecCCCCCC
Q 005894 123 NVYYISSPEIGFLKTMDRKVDHNTTKLVFMVLEPNAV-EPTTNQTYGSILKNLTAIKSF-ASGIVVPKSYIIPVNNKTRY 200 (671)
Q Consensus 123 ~~~~isSf~~~~L~~i~~~~~~~~~~~v~~~~~~~~~-~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~i~p~~~~~~y 200 (671)
++++++||++..|+.+++ ..| ..+++|.+...... ..... ....+-..+.+.+.. +.++.+...++
T Consensus 180 ~~vv~~SF~~~~l~~l~~-~~p-~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 247 (293)
T cd08572 180 RRIIFSSFDPDICIMLRL-KQN-KYPVLFLTNGGTNEVEHMDP-RRRSLQAAVNFALAEGLLGVVLHAEDL--------- 247 (293)
T ss_pred CcEEEECCCHHHHHHHHh-hCc-cCCEEEEecCCCCcccccch-hhhhHHHHHHHHHHCCCeEEEechHHh---------
Confidence 789999999999999995 566 48888754321100 00000 000010112222221 34444433322
Q ss_pred cCCCcHHHHHHHHcCCeEEEeee--cCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 201 LEPATTLVTDAHNAGLQVYASGF--ANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 201 ~~~~~~~V~~ah~~Gl~V~~wtv--~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
....++|++||++|++|++||| |++ .++..+++.| ||||+||+|
T Consensus 248 -~~~~~~v~~~~~~Gl~v~~wTv~~n~~------------~~~~~l~~~G---VdgIiTD~~ 293 (293)
T cd08572 248 -LKNPSLISLVKALGLVLFTYGDDNNDP------------ENVKKQKELG---VDGVIYDRV 293 (293)
T ss_pred -hcCcHHHHHHHHcCcEEEEECCCCCCH------------HHHHHHHHcC---CCEEEecCC
Confidence 2235899999999999999999 444 4588999999 999999986
No 73
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=99.93 E-value=7.3e-26 Score=230.88 Aligned_cols=192 Identities=18% Similarity=0.155 Sum_probs=139.2
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccc-cccccccCHHHHccccccccccCCC
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVR-GWFSVDYTLEQLGQLYLVQNVYTRS 82 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~-G~~v~d~T~~EL~~l~~~~~~~~r~ 82 (671)
+...+..+||||||+||||++||+||.+|+|+||+ + |. +.++|++||+++++++
T Consensus 22 a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~~------------------~~~~-v~~~t~~eL~~l~~~~------ 76 (234)
T cd08570 22 AVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGK------------------DGLI-IDDSTWDELSHLRTIE------ 76 (234)
T ss_pred HHHhCCCEEEEEeeEccCCcEEEeCCCccceeeCC------------------CCCE-eccCCHHHHhhccccc------
Confidence 34457789999999999999999999999999999 7 55 9999999999999872
Q ss_pred ccCCCCCCCCChhhhhHHHHHh----------cC-----ccHHHHHHHHHHHcC-----CceEEEeCCChHHHHHhhhhc
Q 005894 83 EAFDNTQPIPTPDTIYDLFYSQ----------HN-----ISAAKYITEYLQKLI-----SNVYYISSPEIGFLKTMDRKV 142 (671)
Q Consensus 83 ~~f~~~~~IptL~ev~~~~~~~----------~~-----~~~~~~v~~~l~~~~-----~~~~~isSf~~~~L~~i~~~~ 142 (671)
.++++||||+|+++.+... .+ ..+++.+.+++++++ .++++|+||++..|+.+++ .
T Consensus 77 ---~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~v~~~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~-~ 152 (234)
T cd08570 77 ---EPHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDPEILFKLIAEMLAVKPDLDFWRERIILGLWHLDFLKYGKE-V 152 (234)
T ss_pred ---CCCccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCEEEEeCCHHHHHHHHH-h
Confidence 1257899999998765321 12 135567778888875 2689999999999999995 5
Q ss_pred CCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEee
Q 005894 143 DHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASG 222 (671)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wt 222 (671)
.| +.++++...... . ...+ +.... -+.++.+....++- . ...++|+.||++|++|++||
T Consensus 153 ~p-~~~~~~l~~~~~-----~---~~~~---~~~~~-~~~~~~~~~~~~~~-----~---~~~~~v~~~~~~gl~v~~wT 211 (234)
T cd08570 153 LP-GFPVFHIGFSLD-----Y---ARHF---LNYSE-KLVGISMHFVSLWG-----P---FGQAFLPELKKNGKKVFVWT 211 (234)
T ss_pred CC-CCCeEEEEcCHH-----H---HHHH---hcccc-ccceEEeeeehhhc-----c---cCHHHHHHHHHCCCEEEEEe
Confidence 56 477765422110 0 0000 00000 02333332221110 0 13589999999999999999
Q ss_pred ecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 223 FANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 223 v~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
||++.. ++++++.| ||||+||+|
T Consensus 212 vn~~~~------------~~~l~~~g---vdgiiTD~P 234 (234)
T cd08570 212 VNTEED------------MRYAIRLG---VDGVITDDP 234 (234)
T ss_pred cCCHHH------------HHHHHHCC---CCEEEeCCC
Confidence 998854 88999999 999999998
No 74
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=99.93 E-value=8.8e-26 Score=230.96 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=144.8
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+...+..+||||||+||||++||+||.+|+|+||+ +|. +.++|++||++++++ .|+ .
T Consensus 24 A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~~------------------~~~-v~~~t~~el~~l~~~-~~~---~ 80 (240)
T cd08566 24 AIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNG------------------KGK-VSDLTLAEIRKLRLK-DGD---G 80 (240)
T ss_pred HHHcCCCEEEEEeeEcCCCCEEEECCCCCccccCC------------------CCc-hhhCcHHHHHhCCcC-CCc---C
Confidence 34567789999999999999999999999999999 888 999999999999998 444 3
Q ss_pred cCCCCCCCCChhhhhHHHHHh------cCccHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCCcceEEEecCC
Q 005894 84 AFDNTQPIPTPDTIYDLFYSQ------HNISAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNTTKLVFMVLEP 156 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~~~~~~------~~~~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~~~~v~~~~~~ 156 (671)
.|. +++||||+|+++.+... .+....+.+++++++++ .++++++||+...|+.+++ ..| ..++.+.+...
T Consensus 81 ~~~-~~~iptL~evl~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~v~~~sf~~~~l~~~~~-~~p-~~~~~~l~~~~ 157 (240)
T cd08566 81 EVT-DEKVPTLEEALAWAKGKILLNLDLKDADLDEVIALVKKHGALDQVIFKSYSEEQAKELRA-LAP-EVMLMPIVRDA 157 (240)
T ss_pred CCC-CCCCCCHHHHHHhhhcCcEEEEEECchHHHHHHHHHHHcCCcccEEEEECCHHHHHHHHH-hCC-CCEEEEEEccC
Confidence 444 89999999997765332 23235678999999998 5789999999999999995 556 47777643211
Q ss_pred CCcCCCCCCCHHHHhhcHHHHHH-hhceecCCCcceeecCCCCCCcCCCcHHHHHHHHc-CCeEEEeeecCCcccC--CC
Q 005894 157 NAVEPTTNQTYGSILKNLTAIKS-FASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNA-GLQVYASGFANDIYSS--YS 232 (671)
Q Consensus 157 ~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~-Gl~V~~wtv~~~~~~~--~~ 232 (671)
.. . .... ...+.. .+.++.+..... .....+..+|++ |++|++||||++.... ..
T Consensus 158 ~~-----~--~~~~---~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~Gl~v~~wTvn~~~~~~~~~~ 216 (240)
T cd08566 158 ED-----L--DEEE---ARAIDALNLLAFEITFDDL-----------DLPPLFDELLRALGIRVWVNTLGDDDTAGLDRA 216 (240)
T ss_pred cc-----h--hHHH---HhcccccceEEEEEecccc-----------ccHHHHHHHHHhCCCEEEEECCCcccccchhhh
Confidence 10 0 0000 000000 012222221110 124788889998 9999999999642100 00
Q ss_pred CCCChHHHHHHHhhcCceeeeeEeecCC
Q 005894 233 YNFEPEAEYLTFIDNSQFAVDGFITDFP 260 (671)
Q Consensus 233 ~~~d~~~e~~~~i~~g~~~Vdgv~td~p 260 (671)
+ .+...++.++++.| ||||+||+|
T Consensus 217 ~-~~~~~~~~~l~~~G---vd~I~TD~P 240 (240)
T cd08566 217 L-SDPREVWGELVDAG---VDVIQTDRP 240 (240)
T ss_pred h-hCchhHHHHHHHcC---CCEEecCCC
Confidence 1 12236688999999 999999998
No 75
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.93 E-value=1e-25 Score=231.92 Aligned_cols=212 Identities=22% Similarity=0.212 Sum_probs=147.2
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCC-C
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTR-S 82 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r-~ 82 (671)
+...+.-+||||||+||||++||+||.+|+|+||+ +|. +.++|++||++++++. +++. .
T Consensus 22 A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~------------------~~~-i~~~t~~el~~l~~~~-~~~~~~ 81 (249)
T cd08561 22 AVELGADVLETDVHATKDGVLVVIHDETLDRTTDG------------------TGP-VADLTLAELRRLDAGY-HFTDDG 81 (249)
T ss_pred HHHhCCCEEEEEeeECCCCCEEEECCCccccccCC------------------CCc-hhhCCHHHHhhcCcCc-cccCcc
Confidence 34567789999999999999999999999999999 888 9999999999999884 4321 1
Q ss_pred c-c--CC-CCCCCCChhhhhHHHHH-----hcCc---cHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCCcce
Q 005894 83 E-A--FD-NTQPIPTPDTIYDLFYS-----QHNI---SAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNTTKL 149 (671)
Q Consensus 83 ~-~--f~-~~~~IptL~ev~~~~~~-----~~~~---~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~~~~ 149 (671)
. . +. .+++||||+|+++.+.. +.+. .+++.+++++++++ .++++++||+...|+.+++ ..| +.++
T Consensus 82 ~~~~~~~~~~~~iptL~evl~~~~~~~~~ieiK~~~~~~~~~~~~~l~~~~~~~~~~~~Sf~~~~l~~~~~-~~p-~~~~ 159 (249)
T cd08561 82 GRTYPYRGQGIRIPTLEELFEAFPDVRLNIEIKDDGPAAAAALADLIERYGAQDRVLVASFSDRVLRRFRR-LCP-RVAT 159 (249)
T ss_pred ccccccCCCCccCCCHHHHHHhCcCCcEEEEECCCchhHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHH-HCC-Ccce
Confidence 1 1 11 26899999999765532 1222 57888999999998 6789999999999999995 656 3666
Q ss_pred EEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCccc
Q 005894 150 VFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYS 229 (671)
Q Consensus 150 v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~ 229 (671)
.+.......+.. ..........+....++.++..+. +|......+|+.+|++|++|++||||++..
T Consensus 160 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~G~~v~vWTVN~~~~- 225 (249)
T cd08561 160 SAGEGEVAAFVL------ASRLGLGSLYSPPYDALQIPVRYG-------GVPLVTPRFVRAAHAAGLEVHVWTVNDPAE- 225 (249)
T ss_pred eccHHHHHHHHH------HhhcccccccCCCCcEEEcCcccC-------CeecCCHHHHHHHHHCCCEEEEEecCCHHH-
Confidence 542100000000 000000000001123333332211 122234699999999999999999998744
Q ss_pred CCCCCCChHHHHHHHhhcCceeeeeEeecCCCcccc
Q 005894 230 SYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATE 265 (671)
Q Consensus 230 ~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~ 265 (671)
+..+++.| ||||+||+|.....
T Consensus 226 -----------~~~l~~~g---VdgIiTD~p~~~~~ 247 (249)
T cd08561 226 -----------MRRLLDLG---VDGIITDRPDLLLE 247 (249)
T ss_pred -----------HHHHHhcC---CCEEEcCCHHHHHh
Confidence 88999999 99999999987653
No 76
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=99.93 E-value=1.6e-25 Score=235.12 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=145.1
Q ss_pred cccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHcccccc---ccc
Q 005894 2 AKSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLV---QNV 78 (671)
Q Consensus 2 ~~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~---~~~ 78 (671)
..+...+..+||+|||+||||++||+||.+|+|| |+ +|. |.|+|++||++++.. ..|
T Consensus 31 ~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~~------------------~~~-v~~lt~~eL~~ld~~~~~~~~ 90 (286)
T cd08606 31 ILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-GT------------------DVP-IHDLTLEQFLHLSRMKYTVDF 90 (286)
T ss_pred HHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-CC------------------CCc-cccCCHHHHHhhhcccccccc
Confidence 3455678899999999999999999999999994 77 777 999999999999843 223
Q ss_pred cCCCccCCC---C----CCCCChhhhhHHHHH------hcCc-------------------cHHHHHHHHHHHcC-CceE
Q 005894 79 YTRSEAFDN---T----QPIPTPDTIYDLFYS------QHNI-------------------SAAKYITEYLQKLI-SNVY 125 (671)
Q Consensus 79 ~~r~~~f~~---~----~~IptL~ev~~~~~~------~~~~-------------------~~~~~v~~~l~~~~-~~~~ 125 (671)
++ ..|.. + ++||||+||++.+.. |.+. .+++.+++++++++ .+++
T Consensus 91 ~~--~~~~~~~~g~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~v 168 (286)
T cd08606 91 KK--KGFKGNSRGHSIQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAEEEEVAPVAIELNAFVDTVLEKVFDYGAGRNI 168 (286)
T ss_pred cc--cCCCCcccccccccCCCcHHHHHHhCCCccceEEEEecCCcchhhhcccccchhHHHHHHHHHHHHHHhcCCCCce
Confidence 22 33431 2 469999999654422 1121 23457889999988 5789
Q ss_pred EEeCCChHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHh-hceecCCCcceeecCCCCCCcCCC
Q 005894 126 YISSPEIGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSF-ASGIVVPKSYIIPVNNKTRYLEPA 204 (671)
Q Consensus 126 ~isSf~~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~i~p~~~~~~y~~~~ 204 (671)
+++||++..++.++. ..| ..++.+.+... . .+........+.....+.+.. +.|+.++..+. ...
T Consensus 169 i~sSF~~~~l~~~~~-~~p-~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 234 (286)
T cd08606 169 IFSSFTPDICILLSL-KQP-GYPVLFLTEAG-K-APDMDVRAASLQEAIRFAKQWNLLGLVSAAEPL----------VMC 234 (286)
T ss_pred EEEcCCHHHHHHHHh-hCc-CCCEEEEeCCC-C-CccCCchhhcHHHHHHHHHHCCCeEEEechHHh----------hhC
Confidence 999999999999995 556 47877643211 1 110000000010011111111 23333222221 123
Q ss_pred cHHHHHHHHcCCeEEEeee--cCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcccccc
Q 005894 205 TTLVTDAHNAGLQVYASGF--ANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEAI 267 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wtv--~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~i 267 (671)
..+|+.+|++|++|++||| |++. +++++++.| ||||+||+|......+
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n~~~------------~~~~l~~~G---VdgIiTD~p~~~~~~~ 284 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNNDPE------------NAKTQVKAG---VDAVIVDSVLAIRRGL 284 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccCCHH------------HHHHHHHcC---CCEEEECCHHHHHHHh
Confidence 5899999999999999999 5554 488999999 9999999999876543
No 77
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.92 E-value=3.9e-25 Score=229.39 Aligned_cols=205 Identities=22% Similarity=0.190 Sum_probs=143.5
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccc----cccccccccccccccCCcccccccccccCHHHHccccccccc
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNIT----TINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNV 78 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT----~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~ 78 (671)
.+...+..+||||||+||||++||+||.+|+|+| ++ .|+.+ ..|. |.|+|++||++++++...
T Consensus 23 ~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~--~~~~~----------~~~~-v~~~t~~el~~l~~~~~~ 89 (263)
T cd08567 23 KALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDG--AWLPY----------EGPA-LYELTLAEIKQLDVGEKR 89 (263)
T ss_pred HHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCC--Ccccc----------cCcc-hhcCCHHHHHhcCCCccc
Confidence 3445677899999999999999999999999754 43 11111 1366 999999999999998432
Q ss_pred cCC--CccCC-----CCCCCCChhhhhHHHHHh----c------C------------ccHHHHHHHHHHHcC-CceEEEe
Q 005894 79 YTR--SEAFD-----NTQPIPTPDTIYDLFYSQ----H------N------------ISAAKYITEYLQKLI-SNVYYIS 128 (671)
Q Consensus 79 ~~r--~~~f~-----~~~~IptL~ev~~~~~~~----~------~------------~~~~~~v~~~l~~~~-~~~~~is 128 (671)
+.+ ...|. .+++||||+|+++.+... . + ..+++.+++++++++ .++++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~ 169 (263)
T cd08567 90 PGSDYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDILHPPPEEFVDAVLAVIRKAGLEDRVVLQ 169 (263)
T ss_pred cCcCcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccccCccHHHHHHHHHHHHHHcCCCCceEEE
Confidence 111 23332 158999999997765431 1 1 125678899999988 5789999
Q ss_pred CCChHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHH-hhceecCCCcceeecCCCCCCcCCCcHH
Q 005894 129 SPEIGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKS-FASGIVVPKSYIIPVNNKTRYLEPATTL 207 (671)
Q Consensus 129 Sf~~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~-~a~~i~~~~~~i~p~~~~~~y~~~~~~~ 207 (671)
||++..|+.+++ ..| ..++++.+..... ..+. ..++. -+..+.+.... ...++
T Consensus 170 Sf~~~~l~~~~~-~~p-~~~~~~l~~~~~~------~~~~------~~~~~~~~~~~~~~~~~------------~~~~~ 223 (263)
T cd08567 170 SFDWRTLQEVRR-LAP-DIPTVALTEETTL------GNLP------RAAKKLGADIWSPYFTL------------VTKEL 223 (263)
T ss_pred eCCHHHHHHHHH-HCC-CccEEEEecCCcc------cCHH------HHHHHhCCcEEecchhh------------cCHHH
Confidence 999999999995 556 4777765432210 0111 11111 12333332221 23589
Q ss_pred HHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCC
Q 005894 208 VTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPT 261 (671)
Q Consensus 208 V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~ 261 (671)
++.+|++|++|++||||++. ++.++++.| ||||+||+|.
T Consensus 224 i~~~~~~G~~v~vwtvn~~~------------~~~~~~~~G---vdgi~TD~P~ 262 (263)
T cd08567 224 VDEAHALGLKVVPWTVNDPE------------DMARLIDLG---VDGIITDYPD 262 (263)
T ss_pred HHHHHHCCCEEEEecCCCHH------------HHHHHHHcC---CCEEEcCCCC
Confidence 99999999999999998764 388999999 9999999996
No 78
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.92 E-value=6.7e-25 Score=223.78 Aligned_cols=188 Identities=16% Similarity=0.140 Sum_probs=133.8
Q ss_pred CCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCccCC
Q 005894 7 LSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSEAFD 86 (671)
Q Consensus 7 ~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~~f~ 86 (671)
.+. .||+|||+||||++||+||.+|+|+||+ +|. |.++|++||++++++.
T Consensus 33 ~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~~------------------~~~-v~~~t~~eL~~l~~~~---------- 82 (237)
T cd08585 33 AGY-GIELDVQLTADGEVVVFHDDNLKRLTGV------------------EGR-VEELTAAELRALRLLG---------- 82 (237)
T ss_pred cCC-cEEEEeeECCCCCEEEeccchHhhhcCC------------------CCc-cccCCHHHHhcCCCCC----------
Confidence 344 7999999999999999999999999999 888 9999999999999872
Q ss_pred CCCCCCChhhhhHHHHHh------cC------ccHHHHHHHHHHHcCCceEEEeCCChHHHHHhhhhcCCCCcceEEEec
Q 005894 87 NTQPIPTPDTIYDLFYSQ------HN------ISAAKYITEYLQKLISNVYYISSPEIGFLKTMDRKVDHNTTKLVFMVL 154 (671)
Q Consensus 87 ~~~~IptL~ev~~~~~~~------~~------~~~~~~v~~~l~~~~~~~~~isSf~~~~L~~i~~~~~~~~~~~v~~~~ 154 (671)
.+++||||+||++.+... .+ ..+++.+++++++++ .+++|+||++..|+.+++ ..| +.++.+.+.
T Consensus 83 ~~~~iPtL~evl~~~~~~~~l~iEiK~~~~~~~~l~~~v~~~l~~~~-~~v~i~SF~~~~l~~l~~-~~p-~~~~~~l~~ 159 (237)
T cd08585 83 TDEHIPTLDEVLELVAGRVPLLIELKSCGGGDGGLERRVLAALKDYK-GPAAIMSFDPRVVRWFRK-LAP-GIPRGQLSE 159 (237)
T ss_pred CCCCCCCHHHHHHHhccCceEEEEEccCCccchHHHHHHHHHHHhcC-CCEEEEECCHHHHHHHHH-HCC-CCCEEEEec
Confidence 278999999997654322 12 246778888888875 478899999999999995 667 488876542
Q ss_pred CCCCcCCCCCCCHH-HHhhcHHH-HHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHc-CCeEEEeeecCCcccCC
Q 005894 155 EPNAVEPTTNQTYG-SILKNLTA-IKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNA-GLQVYASGFANDIYSSY 231 (671)
Q Consensus 155 ~~~~~~~~~~~~y~-~~~~~l~~-i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~-Gl~V~~wtv~~~~~~~~ 231 (671)
.... .. ....+. .+.+.+.. ....++.+.+....+ ..++|+.||++ |++|++||||++..
T Consensus 160 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~G~~v~vWTVnd~~~--- 222 (237)
T cd08585 160 GSND-EA-DPAFWNEALLSALFSNLLTRPDFIAYHLDDL------------PNPFVTLARALLGMPVIVWTVRTEED--- 222 (237)
T ss_pred CCcc-cc-cccchhHHHHHhhhhhhccCCCEEEeChhhC------------cCHHHHHHHHhcCCcEEEEeCCCHHH---
Confidence 1110 00 000000 01111100 001123333322221 25899999999 99999999999854
Q ss_pred CCCCChHHHHHHHhhcCceeeeeEe
Q 005894 232 SYNFEPEAEYLTFIDNSQFAVDGFI 256 (671)
Q Consensus 232 ~~~~d~~~e~~~~i~~g~~~Vdgv~ 256 (671)
++++++.| +++|+
T Consensus 223 ---------~~~l~~~G---~~~i~ 235 (237)
T cd08585 223 ---------IARLKQYA---DNIIF 235 (237)
T ss_pred ---------HHHHHHhC---CeeEe
Confidence 88999999 99887
No 79
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.90 E-value=1.9e-23 Score=213.49 Aligned_cols=193 Identities=12% Similarity=0.119 Sum_probs=135.4
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCccccc-ccccccccccccccccCCcccccccccccCHHHHccccccccccCCC
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNI-TTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRS 82 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~Ldrt-T~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~ 82 (671)
+...+..+||||||+||||++||+||.+++|+ +.+ ...++. +.++|++||++++..
T Consensus 24 A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g---------------~~~~~~-i~~~t~~el~~~~~~------- 80 (237)
T cd08583 24 NYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLG---------------LPTSKN-TKPLSYEEFKSKKIY------- 80 (237)
T ss_pred HHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcC---------------Cccccc-ccCCCHHHHhhcccc-------
Confidence 44568889999999999999999999999885 222 011445 899999999987653
Q ss_pred ccCCCCCCCCChhhhhHHHHH--h------cCc-------cHHHHHHHHHHHc--C-CceEEEeCCChHHHHHhhhhcCC
Q 005894 83 EAFDNTQPIPTPDTIYDLFYS--Q------HNI-------SAAKYITEYLQKL--I-SNVYYISSPEIGFLKTMDRKVDH 144 (671)
Q Consensus 83 ~~f~~~~~IptL~ev~~~~~~--~------~~~-------~~~~~v~~~l~~~--~-~~~~~isSf~~~~L~~i~~~~~~ 144 (671)
++++||||+||.+.+.. . .+. .+...+++.++++ + .++++++||++..|+.+++ ..|
T Consensus 81 ----~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~SF~~~~L~~~~~-~~p 155 (237)
T cd08583 81 ----GKYTPMDFKDVIDLLKKYPDVYIVTDTKQDDDNDIKKLYEYIVKEAKEVDPDLLDRVIPQIYNEEMYEAIMS-IYP 155 (237)
T ss_pred ----CCCCCCCHHHHHHHHHhCCCeEEEEEecCCCcccHHHHHHHHHHHHHhhcccccceeEEEecCHHHHHHHHH-hCC
Confidence 26899999999776542 1 121 1344678888875 2 4689999999999999995 656
Q ss_pred CCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHh-hceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeee
Q 005894 145 NTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSF-ASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGF 223 (671)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv 223 (671)
. ....+....... ...... +..++.. +.++.+++..+ ...+|+.+|++|++|++|||
T Consensus 156 ~-~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~Gl~v~vwTV 213 (237)
T cd08583 156 F-KSVIYTLYRQDS------IRLDEI---IAFCYENGIKAVTISKNYV------------NDKLIEKLNKAGIYVYVYTI 213 (237)
T ss_pred C-cceeeEeccccc------cchHHH---HHHHHHcCCcEEEechhhc------------CHHHHHHHHHCCCEEEEEeC
Confidence 2 344443221110 000001 1122222 44555544333 25899999999999999999
Q ss_pred cCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCC
Q 005894 224 ANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPT 261 (671)
Q Consensus 224 ~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~ 261 (671)
|++.. ++++++.| ||||+||++.
T Consensus 214 n~~~~------------~~~l~~~G---VdgiiTD~~~ 236 (237)
T cd08583 214 NDLKD------------AQEYKKLG---VYGIYTDFLT 236 (237)
T ss_pred CCHHH------------HHHHHHcC---CCEEEeCCCC
Confidence 99854 88999999 9999999985
No 80
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=99.90 E-value=3.3e-24 Score=219.81 Aligned_cols=209 Identities=25% Similarity=0.310 Sum_probs=127.3
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHcccc-cc--ccccC
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLY-LV--QNVYT 80 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~-~~--~~~~~ 80 (671)
+...+..+||||||+||||++||+||.+|+|+|++ .|. +.|+|++||++++ ++ .....
T Consensus 19 A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~------------------~~~-i~~~t~~el~~l~~~~~~~~~~~ 79 (256)
T PF03009_consen 19 AIELGADGIELDVQLTKDGVPVVFHDDTLDRTTGG------------------DGP-ISDLTYAELKKLRTLGSKNSPPF 79 (256)
T ss_dssp HHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSST------------------ESB-GGGS-HHHHTTSBESSTTTTCGG
T ss_pred HHHhCCCeEcccccccCCceeEeccCCeeeeecCC------------------Cce-eccCCHHHHhhCcccccCCcccc
Confidence 44667899999999999999999999999999999 777 9999999999999 43 11223
Q ss_pred CCccCCCCCCCCChhhhhHHHHHh-c------C----c------cHHHHHHHHHHHcC-------CceEEEeCCChHHHH
Q 005894 81 RSEAFDNTQPIPTPDTIYDLFYSQ-H------N----I------SAAKYITEYLQKLI-------SNVYYISSPEIGFLK 136 (671)
Q Consensus 81 r~~~f~~~~~IptL~ev~~~~~~~-~------~----~------~~~~~v~~~l~~~~-------~~~~~isSf~~~~L~ 136 (671)
+...++..++||||+|+.+..... . + . .+...++..+.... ..+++++||+...++
T Consensus 80 ~~~~~~~~~~i~tl~e~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sf~~~~l~ 159 (256)
T PF03009_consen 80 RGQRIPGKQKIPTLEEVLELCAKVKLNLEIKIKSKDEIKDPEFLKIVKDIVESVSDILKNSKQALSRRIIISSFDPEALK 159 (256)
T ss_dssp TTTTSCTCB--EBHHHHHHHHHTTTSEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCHHHHHHHHCTSEEEEESCHHHHH
T ss_pred cccceecccccCcHHHHHHhhhhccceeEEEEeecccccchhhccccccccccccccccccccccccccccccCcHHHHH
Confidence 334444457899999997652221 1 0 0 11222233332221 358999999999999
Q ss_pred HhhhhcCCCCcceEEEecCCCCcCCCCCCCHHH--HhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHc
Q 005894 137 TMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGS--ILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNA 214 (671)
Q Consensus 137 ~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~--~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~ 214 (671)
.+++.. | +.++++.+...... +.. ....+..++ ..++......+ .. ....+++|+.||++
T Consensus 160 ~l~~~~-~-~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~---~~----~~~~~~~v~~~~~~ 221 (256)
T PF03009_consen 160 QLKQRA-P-RYPVGFLFEQDDEA-------PADISLFELYKFVK--CPGFLASVWNY---AD----RLGNPRLVQEAHKA 221 (256)
T ss_dssp HHHHHC-T-TSEEEEEESSCHHH-------HHH-CCHHHHHHHT--TTEEEEEHGGG---GH----HCEBHHHHHHHHHT
T ss_pred HHHhcC-C-CceEEEEeccCccc-------cccchhhHHHHhhc--ccccccccccc---cc----ccccHHHHHHHHHC
Confidence 999644 4 47777654322110 000 000111111 22222111111 10 00125799999999
Q ss_pred CCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCc
Q 005894 215 GLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTT 262 (671)
Q Consensus 215 Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~ 262 (671)
|++|++||||++. ..++.++++.| ||||+||+|.+
T Consensus 222 g~~v~~wtvn~~~----------~~~~~~l~~~g---vdgIiTD~P~~ 256 (256)
T PF03009_consen 222 GLKVYVWTVNDPD----------VEDMKRLLDLG---VDGIITDFPDT 256 (256)
T ss_dssp T-EEEEBSB-SHS----------HHHHHHHHHHT----SEEEES-HHH
T ss_pred CCEEEEEecCCcH----------HHHHHHHHhCC---CCEEEEcCCCC
Confidence 9999999999982 13488999999 99999999964
No 81
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=99.89 E-value=2.3e-23 Score=216.36 Aligned_cols=207 Identities=16% Similarity=0.157 Sum_probs=141.4
Q ss_pred ccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCC--C
Q 005894 5 NCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTR--S 82 (671)
Q Consensus 5 ~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r--~ 82 (671)
...+..+||||||+||||++||+||.+|+|+||+ +|. |.|+|++||++++++ .|+.. .
T Consensus 70 ~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R~T~g------------------~g~-V~dlTlaEL~~Ld~g-~~~~~~~g 129 (309)
T cd08613 70 FDAGADVVELDVHPTKDGEFAVFHDWTLDCRTDG------------------SGV-TRDHTMAELKTLDIG-YGYTADGG 129 (309)
T ss_pred HHcCCCEEEEEEEEccCCeEEEEecCccccccCC------------------CCc-hhhCCHHHHhhCCcC-cccccccc
Confidence 4567889999999999999999999999999999 888 999999999999998 45532 1
Q ss_pred ccCC----CCCCCCChhhhhHHHHH-----hcC---ccHHHHHHHHHHHcCCceEEEeCCC--hHHHHHhhhhcCCCCcc
Q 005894 83 EAFD----NTQPIPTPDTIYDLFYS-----QHN---ISAAKYITEYLQKLISNVYYISSPE--IGFLKTMDRKVDHNTTK 148 (671)
Q Consensus 83 ~~f~----~~~~IptL~ev~~~~~~-----~~~---~~~~~~v~~~l~~~~~~~~~isSf~--~~~L~~i~~~~~~~~~~ 148 (671)
..|+ +..+||||+|+++.+.. +.| ....+.+.+++++++..++.+.||+ ...|+++++ ..|. .+
T Consensus 130 ~~~p~~~~~~~~IPTL~EvL~~~~~~~l~IEiK~~~~~~~~~v~~~i~~~~~~r~~v~sf~s~~~~l~~~r~-l~P~-~~ 207 (309)
T cd08613 130 KTFPFRGKGVGMMPTLDEVFAAFPDRRFLINFKSDDAAEGELLAEKLATLPRKRLQVLTVYGGDKPIAALRE-LTPD-LR 207 (309)
T ss_pred cccccccCCCCCCcCHHHHHHhcCCCcEEEEeCCCCccHHHHHHHHHHhcCccceEEEEEECCHHHHHHHHH-HCCC-Cc
Confidence 2232 12579999999776533 222 2345889999999885566666676 777999995 5452 44
Q ss_pred eEEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCC----cceeecCCCCCCcCC-CcHHHHHHHHcCCeEEEe--
Q 005894 149 LVFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPK----SYIIPVNNKTRYLEP-ATTLVTDAHNAGLQVYAS-- 221 (671)
Q Consensus 149 ~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~----~~i~p~~~~~~y~~~-~~~~V~~ah~~Gl~V~~w-- 221 (671)
+.- ... -..- .+.++....+|..+.. ...+|.+- ..++-. +..+++.+|++|.+|++|
T Consensus 208 ~~s----~~~--------~~~~--~~~~~~~~~~g~~p~~~~~~~~~vP~~~-~~~~~~w~~~f~~~~~~~g~~V~~~~~ 272 (309)
T cd08613 208 TLS----KAS--------MKDC--LIEYLALGWTGYVPDSCRNTTLLIPLNY-APWLWGWPNRFLARMEAAGTRVILVGP 272 (309)
T ss_pred eec----ccc--------hHHH--HHHHHhhcccccCCccccCCeEecCccc-cceEEeCCHHHHHHHHHcCCeEEEEec
Confidence 331 100 0000 0111111012222111 12233322 233334 579999999999999999
Q ss_pred --------eecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcc
Q 005894 222 --------GFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTA 263 (671)
Q Consensus 222 --------tv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~ 263 (671)
||+++.. |+++.+.| +|||+||.++..
T Consensus 273 ~~~~~~~~~~d~~~~------------~~~l~~~~---~~gi~T~r~~~l 307 (309)
T cd08613 273 YTGGEFSEGFDTPED------------LKRLPEGF---TGYIWTNKIEAL 307 (309)
T ss_pred ccCCcccCCCCCHHH------------HHHHHhhC---CCeEEeCCHhhc
Confidence 7877744 99999999 999999988753
No 82
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.87 E-value=9.8e-22 Score=203.32 Aligned_cols=206 Identities=23% Similarity=0.273 Sum_probs=153.2
Q ss_pred ccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCcc
Q 005894 5 NCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSEA 84 (671)
Q Consensus 5 ~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~~ 84 (671)
.-.+..+||||||+||||++||+||.+++|||++ .|. +.++|++|+++++.+ .|.. ..
T Consensus 30 ~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~~------------------~~~-~~~~~~~~~~~~~~~-~~~~--~~ 87 (257)
T COG0584 30 AEQGADYIELDVQLTKDGVLVVIHDETLDRTTNG------------------LGT-VRDLTLAELKRLDAG-SFRI--PT 87 (257)
T ss_pred HHcCCCEEEeeccCccCCcEEEecccchhhhccC------------------ccc-cccCChhhhcCcccC-cccC--CC
Confidence 3467889999999999999999999999999999 777 889999999999965 3332 33
Q ss_pred CCCCCCCCChhhhhHHHH------HhcC-------cc-HHHHHHHHHHHcC----CceEEEeCCChHHHHHhhhhcCCCC
Q 005894 85 FDNTQPIPTPDTIYDLFY------SQHN-------IS-AAKYITEYLQKLI----SNVYYISSPEIGFLKTMDRKVDHNT 146 (671)
Q Consensus 85 f~~~~~IptL~ev~~~~~------~~~~-------~~-~~~~v~~~l~~~~----~~~~~isSf~~~~L~~i~~~~~~~~ 146 (671)
| ++.+|+|+|+....- .+.+ .. +...++..+.+.. ..++++|||++..|+.+++ ..| .
T Consensus 88 ~--~~~ip~l~~~l~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~-~~p-~ 163 (257)
T COG0584 88 F--GEEIPTLEELLEATGRKIGLYIEIKSPGFHPQEGKILAALLALLKRYGGTAADDRVILSSFDHAALKRIKR-LAP-D 163 (257)
T ss_pred C--CCccCCHHHHHHHhcccCCeEEEecCCCcccchhhhHHHHHHHHHHhcccCCCCceEEEecCHHHHHHHHH-hCc-C
Confidence 3 599999999966441 1111 11 3566666666653 3689999999999999996 445 4
Q ss_pred cceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCC
Q 005894 147 TKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFAND 226 (671)
Q Consensus 147 ~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~ 226 (671)
.++++.+..... -........+..+..++.++.+.+..+-+. .+.+|..+|..|+.|++|||+++
T Consensus 164 ~~~~~l~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~gl~v~~~tv~~~ 228 (257)
T COG0584 164 LPLGLLLDATDQ------YDWMELPRALKEVALYADGVGPDWAMLAEL---------LTELVDDAHAAGLKVHVWTVNEE 228 (257)
T ss_pred CceEEEEcccch------hhhhhccchhhHHHhhhcccCcccceeccc---------ccHHHHHHHhCCCeEEEEecCcH
Confidence 788865432210 001111235666788888888776655221 25799999999999999999998
Q ss_pred cccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCccccc
Q 005894 227 IYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEA 266 (671)
Q Consensus 227 ~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~ 266 (671)
.. +..+.+.| |||++||+|......
T Consensus 229 ~~------------~~~~~~~g---vd~i~td~p~~~~~~ 253 (257)
T COG0584 229 DD------------IRLLLEAG---VDGLITDFPDLAVAF 253 (257)
T ss_pred HH------------HHHHHHcC---CCEEEcCCHHHHHHh
Confidence 64 77889999 999999999987653
No 83
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.85 E-value=1.9e-20 Score=181.06 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=129.0
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCccccccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFD 351 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~d 351 (671)
|||||| ||++||++|++. |+||+|||+| ||++||+||.+++
T Consensus 1 IiAHRG-------NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~----------------------------- 41 (192)
T cd08584 1 IIAHRG-------NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK----------------------------- 41 (192)
T ss_pred CCccch-------HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC-----------------------------
Confidence 589999 999999999999 9999999999 9999999999651
Q ss_pred CCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHH
Q 005894 352 LTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKAL 431 (671)
Q Consensus 352 lT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l 431 (671)
++|||+|+|+++++. .++||||.. .+++++.+++
T Consensus 42 ----------------------------------~~PtLeEvL~~~~~~---~l~inIK~~---------~l~~~l~~li 75 (192)
T cd08584 42 ----------------------------------NGELLEDWLKEYNHG---TLILNIKAE---------GLELRLKKLL 75 (192)
T ss_pred ----------------------------------CCCCHHHHHHhcccc---cEEEEECch---------hHHHHHHHHH
Confidence 269999999999765 589999943 4778999999
Q ss_pred HhcCCCCCCCceEEEEcCChHHHHHHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccch
Q 005894 432 SNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNAT 510 (671)
Q Consensus 432 ~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~ 510 (671)
++++.. ++++++||++..+++++.- +.+-+...-.+ ..+..+ .-+...-++|.+.... ...+.
T Consensus 76 ~~~~~~----~~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E----~~~~~~---~~~~~~~~VW~D~f~~-----~~~~~ 139 (192)
T cd08584 76 AEYGIT----NYFFLDMSVPDIIKYLENGEKRTATRVSEYE----PIPTAL---SLYEKADWVWIDSFTS-----LWLDN 139 (192)
T ss_pred HhcCCc----ceEEEEcCCHHHHHHHhcCCCeeEEeecccc----cchHHH---HhhccccEEEEecccc-----cCCCH
Confidence 999997 7999999999999999876 43333222111 111111 0111222334333222 23467
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHH--H--hhcCccEEEECChhh
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATF--A--QGVGVDGITTEFPAT 566 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~--l--~~~GVDgIiTD~P~~ 566 (671)
+.++.+.++|.++..=...--. .|-..++..+ + .+..-++|+||+|..
T Consensus 140 ~~~~~~~~~~~~~c~VSpELh~--------~~~~~~~~~~~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 140 DLILKLLKAGKKICLVSPELHG--------RDHLAEWEAKQYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred HHHHHHHHCCcEEEEECHHHcC--------CChHHHHHHHHhhhhccccCeeEeccCccc
Confidence 8999999999998765332221 1212233322 1 112368999999975
No 84
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=99.74 E-value=9.3e-18 Score=164.82 Aligned_cols=156 Identities=22% Similarity=0.221 Sum_probs=111.6
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+...+..+||+|||+||||++||+||
T Consensus 22 a~~~g~~~iE~Dv~~tkDg~~vv~Hd------------------------------------------------------ 47 (189)
T cd08556 22 ALEAGADGVELDVQLTKDGVLVVIHD------------------------------------------------------ 47 (189)
T ss_pred HHHcCCCEEEEEeeEcCCCCEEEEcC------------------------------------------------------
Confidence 34456789999999999999999999
Q ss_pred cCCCCCCCCChhhhhHHHHHh------cC-----ccHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCCcceEE
Q 005894 84 AFDNTQPIPTPDTIYDLFYSQ------HN-----ISAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNTTKLVF 151 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~~~~~~------~~-----~~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~~~~v~ 151 (671)
+|||+|++..+... .+ ..+.+.+++++++++ .++++++||+...++.+++ ..| +.++.+
T Consensus 48 -------i~tL~e~l~~~~~~~~i~leiK~~~~~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~-~~p-~~~~~~ 118 (189)
T cd08556 48 -------IPTLEEVLELVKGGVGLNIELKEPTRYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKE-LDP-EVPTGL 118 (189)
T ss_pred -------CCCHHHHHHhcccCcEEEEEECCCCCchhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHH-hCC-CCcEEE
Confidence 55555554433221 11 247888999999998 7899999999999999995 556 477776
Q ss_pred EecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCC
Q 005894 152 MVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSY 231 (671)
Q Consensus 152 ~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~ 231 (671)
.+........ .+ .......++++.+.+..+ ...+++.+|++|++|++||||+..
T Consensus 119 ~~~~~~~~~~----~~------~~~~~~~~~~v~~~~~~~------------~~~~i~~~~~~g~~v~~wtvn~~~---- 172 (189)
T cd08556 119 LVDKPPLDPL----LA------ELARALGADAVNPHYKLL------------TPELVRAAHAAGLKVYVWTVNDPE---- 172 (189)
T ss_pred EeecCcccch----hh------hHHHhcCCeEEccChhhC------------CHHHHHHHHHcCCEEEEEcCCCHH----
Confidence 5432211100 00 011122355555544322 258999999999999999999864
Q ss_pred CCCCChHHHHHHHhhcCceeeeeEeecC
Q 005894 232 SYNFEPEAEYLTFIDNSQFAVDGFITDF 259 (671)
Q Consensus 232 ~~~~d~~~e~~~~i~~g~~~Vdgv~td~ 259 (671)
+++.+++.| ||||+||+
T Consensus 173 --------~~~~~~~~G---VdgI~TD~ 189 (189)
T cd08556 173 --------DARRLLALG---VDGIITDD 189 (189)
T ss_pred --------HHHHHHHCC---CCEEecCC
Confidence 488999999 99999996
No 85
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=99.70 E-value=1.6e-16 Score=166.09 Aligned_cols=208 Identities=15% Similarity=0.136 Sum_probs=134.8
Q ss_pred ccccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCC-
Q 005894 3 KSNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTR- 81 (671)
Q Consensus 3 ~~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r- 81 (671)
.+++.++.+||+|||+||||++||+||.+++| |++ .++ +.|+|++||++++.+ .|+..
T Consensus 23 tAsslgad~VE~DVqLTkDgvpVV~HD~~i~~-t~~------------------~~~-V~dlTleqL~~l~~~-~~~~~~ 81 (300)
T cd08578 23 TASSLSGEYLRVKVCVLKDGTPVVAPEWFVPV-GGI------------------KLL-VSDLTAEQLESILDY-SLDDLN 81 (300)
T ss_pred HHHHcCCCEEEEEEEECcCCEEEEECCCceEe-cCC------------------cEE-eecCcHHHHhccCCc-cccccc
Confidence 45678999999999999999999999999977 477 787 999999999999986 44331
Q ss_pred C--------ccCCCCCCCCChhhhhHHHHHhcC--------------------------ccHHHHHHHHHHHcC------
Q 005894 82 S--------EAFDNTQPIPTPDTIYDLFYSQHN--------------------------ISAAKYITEYLQKLI------ 121 (671)
Q Consensus 82 ~--------~~f~~~~~IptL~ev~~~~~~~~~--------------------------~~~~~~v~~~l~~~~------ 121 (671)
. ..+. ++++|||+|+++.+....+ ..+++.|++++-++.
T Consensus 82 ~~~~~~~~~~~~~-~~~~pTL~evL~~lp~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~har~~~~~ 160 (300)
T cd08578 82 SEISDMVDLKRLL-SSRVVSLETLLELLPPSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFDHARYLRHT 160 (300)
T ss_pred ccccccchhhhhc-CCcCCCHHHHHHhhccCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHHHhhhhccc
Confidence 0 1123 6899999999433321110 134566777765542
Q ss_pred ---CceEEEeCCChHHHHHhhhhcCCCCcceEEEecCCCCc----CCCC------------CCCHHHHhh-cHHHHHHh-
Q 005894 122 ---SNVYYISSPEIGFLKTMDRKVDHNTTKLVFMVLEPNAV----EPTT------------NQTYGSILK-NLTAIKSF- 180 (671)
Q Consensus 122 ---~~~~~isSf~~~~L~~i~~~~~~~~~~~v~~~~~~~~~----~~~~------------~~~y~~~~~-~l~~i~~~- 180 (671)
...+++|||+++.-.-++ ...| ..+..|.......- ...+ .-.|.+... .+...-.|
T Consensus 161 ~~~~R~IiFSSf~pdiC~~L~-~KQp-~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si~~Av~fA 238 (300)
T cd08578 161 PGSTRSIVFSSCNPEVCTILN-WKQP-NFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSIKEAVRFA 238 (300)
T ss_pred CCCCCceEEeeCCHHHHHHHH-hcCC-CCCEEEEecCCccccccccccccccccccccccccccccCchhhhHHHHHHHH
Confidence 357899999998888777 4556 48888754322110 0000 001222211 23333333
Q ss_pred ----hceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEe
Q 005894 181 ----ASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFI 256 (671)
Q Consensus 181 ----a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~ 256 (671)
.-||..+.+.+ .....+|+.++++||-+++|+-..... -......| |||++
T Consensus 239 ~~~nL~Giv~~~~~L----------~~~P~lV~~ik~~GL~lv~~g~~~~~~------------~~~~~~~~---vnG~~ 293 (300)
T cd08578 239 KNNNLLGLILPYSLL----------NIVPQLVESIKSRGLLLIASGEPESLI------------EVAEAGDG---INGVV 293 (300)
T ss_pred HHcCCcEEEecHHHH----------hhChHHHHHHHHcCCEEEEECCCCccc------------cccccccC---CceEE
Confidence 45665554443 223589999999999999999864211 00123346 99999
Q ss_pred ecC
Q 005894 257 TDF 259 (671)
Q Consensus 257 td~ 259 (671)
.+.
T Consensus 294 ~~~ 296 (300)
T cd08578 294 TED 296 (300)
T ss_pred eCC
Confidence 864
No 86
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=99.66 E-value=4.2e-16 Score=152.46 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=93.0
Q ss_pred ccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCcc
Q 005894 5 NCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSEA 84 (671)
Q Consensus 5 ~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~~ 84 (671)
...+..+||+|||+||||++||+||.+++|+|.
T Consensus 23 ~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~----------------------------------------------- 55 (179)
T cd08555 23 LDAGARGLELDVRLTKDGELVVYHGPTLDRTTA----------------------------------------------- 55 (179)
T ss_pred HHcCCCEEEEEEeEcCCCeEEEECCCccccccC-----------------------------------------------
Confidence 356778999999999999999999999999872
Q ss_pred CCCCCCCCChhhhhHHHHH-------------hc------CccHHHHHHHHHHHcC----CceEEEeCCChHHHHHhhhh
Q 005894 85 FDNTQPIPTPDTIYDLFYS-------------QH------NISAAKYITEYLQKLI----SNVYYISSPEIGFLKTMDRK 141 (671)
Q Consensus 85 f~~~~~IptL~ev~~~~~~-------------~~------~~~~~~~v~~~l~~~~----~~~~~isSf~~~~L~~i~~~ 141 (671)
++++|||+|+++.+.. +. ...+.+.+++.+++++ .++++++|| . .
T Consensus 56 ---~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sf--------~-~ 123 (179)
T cd08555 56 ---GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSPEYDEFLAKVLKELRVYFDYDLRGKVVLSSF--------N-A 123 (179)
T ss_pred ---CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCCcchHHHHHHHHHHHHcCCcccCCCEEEEee--------c-c
Confidence 3445555555333211 01 1246677888888875 258889999 0 0
Q ss_pred cCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEe
Q 005894 142 VDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYAS 221 (671)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~w 221 (671)
+.+. + . . .. . ... ...++|+.||++|++|++|
T Consensus 124 ~~~~-----~--~--------------------~-----~~---~-~~~------------~~~~~v~~~~~~g~~v~~w 155 (179)
T cd08555 124 LGVD-----Y--Y--------------------N-----FS---S-KLI------------KDTELIASANKLGLLSRIW 155 (179)
T ss_pred cCCC-----h--h--------------------c-----cc---c-hhh------------cCHHHHHHHHHCCCEEEEE
Confidence 1000 0 0 0 00 0 011 1258999999999999999
Q ss_pred eecC-CcccCCCCCCChHHHHHHHhhcCceeeeeEeecC
Q 005894 222 GFAN-DIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDF 259 (671)
Q Consensus 222 tv~~-~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~ 259 (671)
|||+ +. +++++++.| ||||+||+
T Consensus 156 tvn~~~~------------~~~~l~~~G---vd~i~TD~ 179 (179)
T cd08555 156 TVNDNNE------------IINKFLNLG---VDGLITDF 179 (179)
T ss_pred eeCChHH------------HHHHHHHcC---CCEEeCCC
Confidence 9998 64 488999999 99999996
No 87
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.42 E-value=1.1e-13 Score=148.00 Aligned_cols=224 Identities=20% Similarity=0.225 Sum_probs=160.6
Q ss_pred cccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCc
Q 005894 4 SNCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSE 83 (671)
Q Consensus 4 ~~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~ 83 (671)
+...|+..||||||+||||+.|++||.+.+|++++ ++- +.++|+.|++++......+...+
T Consensus 92 a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v------------------~~~-~~~lt~~e~~~l~~~~~~~~~~~ 152 (341)
T KOG2258|consen 92 AIADGADLIELDVQMTSDGVPVILHDSTTVRVTGV------------------PEI-VFDLTWMELRKLGPKIENPFAGP 152 (341)
T ss_pred HHHcCCcEEEeccccCCCCceEEeecCcceeeecc------------------eee-eccCCHHHHhccCccccCccccc
Confidence 35678999999999999999999999999999999 665 89999999999988744332111
Q ss_pred cCCCCCCCCChhhhhH-------HHHHhcCccHHHHHHHHHHHcC-----CceEEEeCCChHHHHHhhhhcCCCCcceEE
Q 005894 84 AFDNTQPIPTPDTIYD-------LFYSQHNISAAKYITEYLQKLI-----SNVYYISSPEIGFLKTMDRKVDHNTTKLVF 151 (671)
Q Consensus 84 ~f~~~~~IptL~ev~~-------~~~~~~~~~~~~~v~~~l~~~~-----~~~~~isSf~~~~L~~i~~~~~~~~~~~v~ 151 (671)
.+ ..+++|+++|... .+..++++.+.+.+++.+++.+ ++.+.||||++..|.++++ ..+. ..+..
T Consensus 153 ~~-~~~~~~~l~e~v~~~~~~n~~~l~d~~~~~~~~vl~~l~~~~~~~~~~~kv~v~s~~~~~l~~~~~-~~~~-~~i~~ 229 (341)
T KOG2258|consen 153 II-TLEKLLTLAEAVASVVGNNVAMLNDVKLLVVDKVLEALKNATSDFSLYDKVLVQSFNPIVLYRLKK-LDPF-ILIGD 229 (341)
T ss_pred cc-chhhhccHHHHHHHHHcCChhhhhhhhhhhHHHHHHHHHHHhcCCCccceEEEEecCcHHHHHhcc-CCce-EEecc
Confidence 12 2578899988732 2233334578888888888765 4689999999999999984 4441 11111
Q ss_pred EecCCCCcCCCCCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCc-CCCcHHHHHHHHcCCeEEEeeecCCcccC
Q 005894 152 MVLEPNAVEPTTNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYL-EPATTLVTDAHNAGLQVYASGFANDIYSS 230 (671)
Q Consensus 152 ~~~~~~~~~~~~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~-~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~ 230 (671)
.+.. ..+.....++.++.++..++..+.|.. +... -+.+.++...++.++.|+.+.++++...+
T Consensus 230 -~~~~------------~~ls~~~dik~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~v~~~~~~~e~~~~ 294 (341)
T KOG2258|consen 230 -TWRF------------TFLSGIEDIKKRAFAVVSSKLAIFPVS--DSLVLAITKNVVAPLQKLNLVVYVEVFNNEVVLA 294 (341)
T ss_pred -eecc------------hhhccchhhhcccceeeechHHHHHHH--HHHhhhhhcceeeehhcCCcEEEEEEeeccceee
Confidence 0100 011223456677777777777666643 1222 22237888999999999999999997788
Q ss_pred CCCCCChHHHHHHHhhcCceeeeeEeecCCCccccc
Q 005894 231 YSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEA 266 (671)
Q Consensus 231 ~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~ 266 (671)
+.|+.++..++..++.+ ..++|..|+++......
T Consensus 295 ~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 328 (341)
T KOG2258|consen 295 VDFSAAPTIELAGWITN--VGIDGYITDFHLTAPRL 328 (341)
T ss_pred ccccccCceEeeeeecc--ccccCceeeccchhhHh
Confidence 88988888888888774 23888999988775543
No 88
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.38 E-value=2.5e-12 Score=129.92 Aligned_cols=212 Identities=14% Similarity=0.113 Sum_probs=122.9
Q ss_pred EeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccccccC
Q 005894 273 ITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFDL 352 (671)
Q Consensus 273 IAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~dl 352 (671)
-+|+=.....| |..|++.||++||.||+++ ||+++|.||..+.|... .+.++
T Consensus 4 hsHNDY~r~~P------l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~~~---------------------tl~~L 55 (228)
T cd08577 4 HSHNDYWRKRP------LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSPAR---------------------TLESL 55 (228)
T ss_pred ccccccccccc------hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCccC---------------------CHHHH
Confidence 45666555544 7789999999999999999 99999999998876622 57899
Q ss_pred CHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHH
Q 005894 353 TWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALS 432 (671)
Q Consensus 353 T~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~ 432 (671)
++++|.++-.... +.+ . ..++ ....++||||...... ..++..+++.++
T Consensus 56 yl~pL~~~l~~~n-------------~~~------~-------~~~~-~~l~LlIDiKt~g~~t----~~~l~~~L~~~~ 104 (228)
T cd08577 56 YLDPLLEILDQNN-------------GQA------Y-------NDPE-QPLQLLIDIKTDGEST----YPALEEVLKPYI 104 (228)
T ss_pred hHHHHHHHHHHcC-------------CCC------C-------CCCC-CceEEEEEECCCChHH----HHHHHHHHHHHH
Confidence 9999988553311 111 0 1111 2257999999764321 246677777787
Q ss_pred hcCCCCC------CCceEEEEcCChHHHHHHhcCCCceEEEEeecccC-CCChhHHHHHH-----HHHHHhcCCceeeec
Q 005894 433 NATFDKQ------STQQVMIQSDDSSVLSKFQDVPAYKKVLHIRKEVS-AAPREVVEEIK-----KYASAVTVTRTSVIS 500 (671)
Q Consensus 433 ~~~~~~~------~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~-d~~~~~l~~i~-----~~a~~v~~~~~~v~~ 500 (671)
+.++... ..=.|+++.-.+..+. . ....+...++.... ++.......+. .|...++.+.....+
T Consensus 105 ~~~~~~~~~~~~~~pvtvV~tGn~p~~~~-~---~~~~r~~f~D~~l~~~~~~~~~~~~~~~~S~~~~~~~~~~~~g~~~ 180 (228)
T cd08577 105 DIGYLSYYDKLVPGPVTVVITGNRPKEEV-K---SQYPRYIFFDGRLDEDLPDEQLARLSPMISASFAKFSKWNGKGDTP 180 (228)
T ss_pred hcCceeecCcEEecCeEEEEeCCCChhhh-c---cccCCeEEEeCChhhccccccccccceEEEccHHHhcCCCCCCCCC
Confidence 7776632 1112444443333321 1 12223333343322 11111110110 122222211111011
Q ss_pred CCCcccccchHHHHHHHHcCCeEEEEeccC-cccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 501 TTESFTTNATNILRDLHSANISVYISALRN-EYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 501 ~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~-~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
. .-+..-.++++.+|++|+++.+||+++ +. .++.+ .++|||+|+||.
T Consensus 181 ~--~q~~~l~~~v~~a~~~Gl~vr~Wtv~~~~~-------------~~~~l-~~~GVd~I~TDd 228 (228)
T cd08577 181 E--DEKEKLKSIIDKAHARGKKVRFWGTPDRPN-------------VWKTL-MELGVDLLNTDD 228 (228)
T ss_pred H--HHHHHHHHHHHHHHHCCCEEEEEccCChHH-------------HHHHH-HHhCCCEEecCC
Confidence 0 001122357889999999999999976 43 57777 499999999995
No 89
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=99.28 E-value=9.6e-11 Score=119.39 Aligned_cols=223 Identities=16% Similarity=0.117 Sum_probs=133.1
Q ss_pred EEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeE-EEecCCCcc--cccCcccccccccccccccccccccc
Q 005894 272 IITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVA-FCLESPDLI--GKTTAATVFMSKATSVPEIQKERGIF 348 (671)
Q Consensus 272 iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~-Vv~HD~~L~--rtT~~~~~f~~r~~~~~~~~~~~G~~ 348 (671)
+|||| =||+..+.+|++.||..||+||...++|.+ ..+||.--+ |.+... .
T Consensus 2 ~iaHm-------Vn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~-------------------~ 55 (265)
T cd08576 2 AIAHM-------VNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAR-------------------E 55 (265)
T ss_pred cchhh-------hccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHH-------------------H
Confidence 45666 388999999999999999999999999977 567775321 111100 1
Q ss_pred cccCCHHHHhccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHH
Q 005894 349 SFDLTWTEIQSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVT 428 (671)
Q Consensus 349 i~dlT~~EL~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~ 428 (671)
.++-=++++++++.. . +++ +.+-+.++||.+....+.......+...
T Consensus 56 ~f~~~l~~~r~~ttp----------------g----------------~~~-~l~lv~lDlK~~~~~~~~~~~ag~~la~ 102 (265)
T cd08576 56 MFDEILDYRRNGTTP----------------G----------------FRE-NLIFVWLDLKNPDLCGECSINAGRDLAR 102 (265)
T ss_pred HHHHHHHHHHhcCCC----------------C----------------ccc-eeEEEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 111122333333210 0 111 2356899999887654322222333334
Q ss_pred HHHHhcCCCCCCCceEEEE--cC---ChHHHHHHhcC-C--Cce------EEEEeecccCCCChhHHHHHHHHHHHhcCC
Q 005894 429 KALSNATFDKQSTQQVMIQ--SD---DSSVLSKFQDV-P--AYK------KVLHIRKEVSAAPREVVEEIKKYASAVTVT 494 (671)
Q Consensus 429 ~~l~~~~~~~~~~~~vii~--Sf---d~~~L~~lk~~-p--~~~------~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~ 494 (671)
++|+.++... ...|+.+. -- +.+.++.|++. . +.. +++-+.. .+.+..+.+..+..+ .
T Consensus 103 ~ll~~~w~~~-~~~ra~~~~s~~~~~~~~~~~~~~~~l~~~~~~~~~~~kvg~df~~------n~~l~~~~~~~~~~~-~ 174 (265)
T cd08576 103 KLLEPYWNGG-SGARALYGFSIPSITDSRFFKGIRDRLNSEEAVSGLLDKVGKDFSG------NEDLEDIRRVYDYGG-D 174 (265)
T ss_pred HHHHHhhcCC-CCeEEEEEEEeccccchHHHHHHHHHHHhcCchhhHHHhhcccccC------CCChHHHHHHHHhcC-c
Confidence 4555554221 11244332 21 34556666554 1 111 1222211 223666666666654 2
Q ss_pred ceeeecCCC--c-cc--ccchHHHHHHHHcCC-----eEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECCh
Q 005894 495 RTSVISTTE--S-FT--TNATNILRDLHSANI-----SVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 495 ~~~v~~~~~--~-~~--~~~~~~V~~~~~~Gl-----~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P 564 (671)
..++.... + +. ...+++++.+|++|. +|++||+|++. ++++++ ++||||||||+|
T Consensus 175 -~h~w~~dGitnC~~~~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~~~-------------~~~~ll-~~GVDGIITD~P 239 (265)
T cd08576 175 -GHIWQSDGITNCLEKYRTCARLREAIKKRDTPGYLGKVYGWTSDKGS-------------SVRKLL-RLGVDGIITNYP 239 (265)
T ss_pred -CceecCCCcccccccccccHHHHHHHHHcCCCCcCCeEEEEeCCCHH-------------HHHHHH-hcCCCEEEECCH
Confidence 23443321 1 11 346789999999999 99999999987 888885 999999999999
Q ss_pred hhHHHHHHhcCC
Q 005894 565 ATASKYFRSKCS 576 (671)
Q Consensus 565 ~~~~~~~~~~~~ 576 (671)
+.+.+++++...
T Consensus 240 ~~i~~~l~~~~~ 251 (265)
T cd08576 240 KRIIDVLKESEF 251 (265)
T ss_pred HHHHHHHHhccc
Confidence 999998876654
No 90
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=98.80 E-value=2.7e-08 Score=96.90 Aligned_cols=166 Identities=11% Similarity=0.049 Sum_probs=95.6
Q ss_pred eEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHccccccccccCCCccCCCCC
Q 005894 10 AIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLVQNVYTRSEAFDNTQ 89 (671)
Q Consensus 10 ~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~~~~~~r~~~f~~~~ 89 (671)
.+||+|||+| ||++||+||.+++|+
T Consensus 19 dgvE~DVr~t-Dg~lVV~HD~~l~~~------------------------------------------------------ 43 (192)
T cd08584 19 FGVETDIRDY-GGQLVISHDPFVKNG------------------------------------------------------ 43 (192)
T ss_pred CEEEEEEEee-CCeEEEECCCCCCCC------------------------------------------------------
Confidence 7899999999 999999999999641
Q ss_pred CCCChhhhhHHHHH-----hcC-ccHHHHHHHHHHHcC-CceEEEeCCChHHHHHhhhhcCCCCcceEEEecCCCCcCCC
Q 005894 90 PIPTPDTIYDLFYS-----QHN-ISAAKYITEYLQKLI-SNVYYISSPEIGFLKTMDRKVDHNTTKLVFMVLEPNAVEPT 162 (671)
Q Consensus 90 ~IptL~ev~~~~~~-----~~~-~~~~~~v~~~l~~~~-~~~~~isSf~~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~ 162 (671)
|||+|+++.+.. +.+ ..+++.+++++++++ .++++++||++.+++.++.... ++..+..+.+..+
T Consensus 44 --PtLeEvL~~~~~~~l~inIK~~~l~~~l~~li~~~~~~~~vi~ssf~~~~l~~~~~~~~----~i~tr~Se~E~~~-- 115 (192)
T cd08584 44 --ELLEDWLKEYNHGTLILNIKAEGLELRLKKLLAEYGITNYFFLDMSVPDIIKYLENGEK----RTATRVSEYEPIP-- 115 (192)
T ss_pred --CCHHHHHHhcccccEEEEECchhHHHHHHHHHHhcCCcceEEEEcCCHHHHHHHhcCCC----eeEEeecccccch--
Confidence 444444332211 011 257789999999998 6788999999999999985221 3333333222111
Q ss_pred CCCCHHHHhhcHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHH
Q 005894 163 TNQTYGSILKNLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYL 242 (671)
Q Consensus 163 ~~~~y~~~~~~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~ 242 (671)
++ -.+...++|+=+..-+-.+.+ ...+++..++|.+|.. -.++..+-+|.. -+.++
T Consensus 116 ---~~-------~~~~~~~~~VW~D~f~~~~~~---------~~~~~~~~~~~~~~c~---VSpELh~~~~~~-~~~~~- 171 (192)
T cd08584 116 ---TA-------LSLYEKADWVWIDSFTSLWLD---------NDLILKLLKAGKKICL---VSPELHGRDHLA-EWEAK- 171 (192)
T ss_pred ---HH-------HHhhccccEEEEecccccCCC---------HHHHHHHHHCCcEEEE---ECHHHcCCChHH-HHHHH-
Confidence 00 011222444322221111112 4889999999999764 234333333220 11112
Q ss_pred HHhhcCceeeeeEeecCCCc
Q 005894 243 TFIDNSQFAVDGFITDFPTT 262 (671)
Q Consensus 243 ~~i~~g~~~Vdgv~td~p~~ 262 (671)
+.++..+-.-+.|.||+|..
T Consensus 172 ~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 172 QYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred HhhhhccccCeeEeccCccc
Confidence 22332211257899999975
No 91
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=98.41 E-value=5e-07 Score=91.53 Aligned_cols=48 Identities=8% Similarity=-0.089 Sum_probs=39.8
Q ss_pred ccCCCeEEEeeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHcccccc
Q 005894 5 NCLSNAIMLCNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLGQLYLV 75 (671)
Q Consensus 5 ~~~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~~l~~~ 75 (671)
.+.+...||.||+++ ||+++|.||.++-|.... +.++++++|.++...
T Consensus 19 l~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~~~t----------------------l~~Lyl~pL~~~l~~ 66 (228)
T cd08577 19 LSAGFGSIEADVWLV-NGDLLVAHDEVDLSPART----------------------LESLYLDPLLEILDQ 66 (228)
T ss_pred HHcCCCEEEEeEEEE-CCEEEEEcChhHcCccCC----------------------HHHHhHHHHHHHHHH
Confidence 355778999999999 999999999999887222 789999999876544
No 92
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=98.26 E-value=7.6e-07 Score=59.74 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=23.0
Q ss_pred eEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChh
Q 005894 522 SVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPA 565 (671)
Q Consensus 522 ~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~ 565 (671)
+|+.||++++. .+++++ ++|||||+||+|+
T Consensus 1 kV~~WT~d~~~-------------~~~~~l-~~GVDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKPA-------------SWRELL-DLGVDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SHH-------------HHHHHH-HHT-SEEEES-HH
T ss_pred CeEEecCCCHH-------------HHHHHH-HcCCCEeeCCCCC
Confidence 58999999987 788885 9999999999995
No 93
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=98.11 E-value=8.5e-06 Score=83.50 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=43.3
Q ss_pred CcHHHHHHHHcCC-----eEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcccccc
Q 005894 204 ATTLVTDAHNAGL-----QVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEAI 267 (671)
Q Consensus 204 ~~~~V~~ah~~Gl-----~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~i 267 (671)
...+++.+|++|. +|++||||+... ++++++.| ||||+||+|....+.+
T Consensus 193 ~~~lv~~~~~rd~~g~i~kV~vWTVn~~~~------------~~~ll~~G---VDGIITD~P~~i~~~l 246 (265)
T cd08576 193 CARLREAIKKRDTPGYLGKVYGWTSDKGSS------------VRKLLRLG---VDGIITNYPKRIIDVL 246 (265)
T ss_pred cHHHHHHHHHcCCCCcCCeEEEEeCCCHHH------------HHHHHhcC---CCEEEECCHHHHHHHH
Confidence 4689999999999 999999998754 88999999 9999999998776644
No 94
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.11 E-value=2.9e-06 Score=84.87 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=43.3
Q ss_pred EeccCC---CCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 273 ITHNGA---SGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 273 IAHRG~---s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
.+|+=+ ...++|||+.||+.|++.||++||+||+-++||+|||+||.++
T Consensus 15 SSHNTYL~g~Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tl 66 (229)
T cd08592 15 SSHNTYLTGDQLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTL 66 (229)
T ss_pred ccccccccCCccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence 356543 3568899999999999999999999999999999999999876
No 95
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=97.96 E-value=8.4e-06 Score=81.28 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=42.7
Q ss_pred eccCC---CCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 274 THNGA---SGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 274 AHRG~---s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
+|+=+ ....+|||++||..|+..||++||+||+-++||+|||+|+.++
T Consensus 16 SHNTYL~g~Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tl 66 (229)
T cd08627 16 SHNTYLTGDQFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTL 66 (229)
T ss_pred CcCccccCCccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence 56543 3457899999999999999999999999999999999999876
No 96
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=97.64 E-value=1.7e-05 Score=53.28 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=22.8
Q ss_pred eEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCC
Q 005894 217 QVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPT 261 (671)
Q Consensus 217 ~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~ 261 (671)
+|+.||++++.. ++.+++.| ||||+||+|.
T Consensus 1 kV~~WT~d~~~~------------~~~~l~~G---VDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKPAS------------WRELLDLG---VDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SHHH------------HHHHHHHT----SEEEES-HH
T ss_pred CeEEecCCCHHH------------HHHHHHcC---CCEeeCCCCC
Confidence 699999988755 88999999 9999999983
No 97
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=97.58 E-value=9.8e-06 Score=89.07 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=51.0
Q ss_pred CceEEeccCCCC-------CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccC
Q 005894 269 RPLIITHNGASG-------VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTT 326 (671)
Q Consensus 269 ~p~iIAHRG~s~-------~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~ 326 (671)
..+-++|||... ...|||...+..|.+.|||++|+|||+|+|.++|++||..+.+.-.
T Consensus 324 ~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~~~ 388 (417)
T KOG2421|consen 324 LSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVSVI 388 (417)
T ss_pred hhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEeec
Confidence 457899999753 3579999999999999999999999999999999999998866544
No 98
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=97.38 E-value=0.00016 Score=74.07 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=38.2
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
..-+.|+.+|..|+..||++||+||+-++||+|||+|+.++
T Consensus 26 l~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 26 LRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred ecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCcc
Confidence 45678999999999999999999999999999999999876
No 99
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=96.99 E-value=0.00092 Score=62.27 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=39.7
Q ss_pred CCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 279 SGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 279 s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
...+.+|+..+|..+++.|++++|+||+.++||+++++|+.++
T Consensus 23 ~~~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 23 KQLWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 4567899999999999999999999999999999999999854
No 100
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=96.36 E-value=0.015 Score=59.62 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=36.7
Q ss_pred CCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 282 YAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 282 ~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
.-+.|.++|..|+..||..||+|++=-.||+|||+|..++
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 27 RGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred cCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 4577999999999999999999999999999999998765
No 101
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=96.33 E-value=0.015 Score=59.59 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=37.2
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
..-+.+.++|..|+..||..||+||+=-.||+|||+|-.+|
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 26 LVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 35588999999999999999999999999999999997665
No 102
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=96.30 E-value=0.014 Score=59.70 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=37.0
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
..-+.|..+|..|+..||..||+||+=-+||+|||+|-.+|
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 26 IGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 34568999999999999999999999999999999997755
No 103
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=96.29 E-value=0.02 Score=58.28 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 282 YAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 282 ~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
.-+.+..+|..|+..||..||+|++=-.||+|||+|-.++
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 27 LSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred cCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 4577899999999999999999999999999999997655
No 104
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=96.13 E-value=0.022 Score=58.53 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
..-+.|..+|..|+..||..||+|++=-.||+|||+|-.++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 26 LKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred ccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 45678999999999999999999999999999999997654
No 105
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.09 E-value=0.022 Score=58.27 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=36.0
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEcc--CCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSK--EGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTk--DGv~Vv~HD~~L 321 (671)
..-+.+..+|..|+..||..||+||+=-. ||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 26 FGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred ccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 35578899999999999999999999865 889999997765
No 106
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=95.90 E-value=0.85 Score=46.66 Aligned_cols=201 Identities=13% Similarity=0.194 Sum_probs=115.6
Q ss_pred chhHHHHHHHHHCCCCeEEeceeEcc------CCeEEEecCCCcccccCcccccccccccccccccccccccccCCHHHH
Q 005894 284 GCTDLAYQQAVDDGADIIDCTVQMSK------EGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFDLTWTEI 357 (671)
Q Consensus 284 ENTl~Af~~Ai~~GaD~IE~DVqlTk------DGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~dlT~~EL 357 (671)
-|+....++|++..+.+||.||.+-+ +++||..|.+..
T Consensus 11 vNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~------------------------------------ 54 (244)
T PF10223_consen 11 VNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPAT------------------------------------ 54 (244)
T ss_pred cCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCC------------------------------------
Confidence 48889999999999999999999984 678888886521
Q ss_pred hccCCCcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCC
Q 005894 358 QSLKPQISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFD 437 (671)
Q Consensus 358 ~~L~~~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~ 437 (671)
..=.||+|+|+.+.... .||-|++|.. +.++..+++|++..-.
T Consensus 55 ---------------------------~SdltLee~L~~v~~~~-kGIKLDFKs~---------eav~pSl~~L~~~~~~ 97 (244)
T PF10223_consen 55 ---------------------------DSDLTLEEWLDEVLSSR-KGIKLDFKSI---------EAVEPSLDLLAKLSDK 97 (244)
T ss_pred ---------------------------CCcCcHHHHHHHHhccC-cEEEEeccCH---------HHHHHHHHHHHHHhhc
Confidence 11246888888777543 4899999975 3455566666653211
Q ss_pred CCCCceEEE------EcCCh---------HHHHHHhcC-CCceEEEEeecc------cCCCChhHHHHHHHHHHHh-cCC
Q 005894 438 KQSTQQVMI------QSDDS---------SVLSKFQDV-PAYKKVLHIRKE------VSAAPREVVEEIKKYASAV-TVT 494 (671)
Q Consensus 438 ~~~~~~vii------~Sfd~---------~~L~~lk~~-p~~~~~~l~~~~------~~d~~~~~l~~i~~~a~~v-~~~ 494 (671)
. ...|.| ..+.. ..|..+++. |+.-+..-.... -+..+...++++...+..+ .++
T Consensus 98 l--~~PvWiNADIl~Gp~~~~~~~~Vd~~~Fl~~v~~~fP~~tLS~GWTT~~~~~~~~~~Yt~~~v~~M~~l~~~~~~l~ 175 (244)
T PF10223_consen 98 L--TRPVWINADILPGPNGPTIPGPVDAKEFLSLVAEKFPHATLSLGWTTRWGPEVPNGGYTWEMVEEMLELCKGINQLP 175 (244)
T ss_pred c--CCCeeEeeeeccCCCCCCCCcccCHHHHHHHHHHhCCCEEEecCcccccCccCCCccccHHHHHHHHHHHHhhccCC
Confidence 1 023332 22322 256667777 765443322111 1113455566677777661 122
Q ss_pred ceeeecCCCcccccchHHHHHHHH--cCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHH
Q 005894 495 RTSVISTTESFTTNATNILRDLHS--ANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATAS 568 (671)
Q Consensus 495 ~~~v~~~~~~~~~~~~~~V~~~~~--~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~ 568 (671)
...-||.-......+..-+..+-+ ....+-+|+-.+..+ +. .....+....|.+-|..|-|+-..
T Consensus 176 Q~VTFpvRA~l~~~S~~~l~wLL~~s~r~SLTvWs~~~D~v--------~v-~~Ll~lr~~~~~~rVyyDlpe~~~ 242 (244)
T PF10223_consen 176 QPVTFPVRAGLARQSWPQLSWLLQQSPRYSLTVWSSKSDPV--------SV-EDLLYLRRNFDKSRVYYDLPEPLR 242 (244)
T ss_pred CceeeeehhhhhhccHHHHHHHHcCCCCceEEEEecCCCCc--------cH-HHHHHHHHhCCCcEEEEeCChhhh
Confidence 223344322222222233334322 467888998755442 21 134444457999999999987653
No 107
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=95.55 E-value=0.016 Score=58.21 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=37.4
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
..-+.+..+|..|+..||..||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 26 LLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 45578899999999999999999999999999999998765
No 108
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=95.38 E-value=0.019 Score=58.47 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=38.2
Q ss_pred CCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 280 GVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 280 ~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
...-+.+.++|..|+..||..||+||+=-.||+|||.|..++
T Consensus 25 Ql~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 25 QLMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred ccCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 346678899999999999999999999999999999998876
No 109
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=95.20 E-value=0.026 Score=56.74 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=37.5
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
.+-+.|.++|..|+..||..||+|++=-.||+|||+|..++
T Consensus 26 l~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 26 LTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 45678899999999999999999999999999999998764
No 110
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=95.19 E-value=0.022 Score=57.36 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 282 YAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 282 ~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
.-+.|..+|..|+..||..||+||+=-.||+|+|.|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 27 SSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred CCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 4567889999999999999999999999999999998764
No 111
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=95.10 E-value=0.027 Score=57.57 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=37.6
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
..-+.|..+|..|+..||..||+|++=-+||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 26 LKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 34578899999999999999999999999999999999876
No 112
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=95.05 E-value=0.025 Score=57.86 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=36.7
Q ss_pred CCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 282 YAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 282 ~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
.-+.+..+|..|+..||..||+||+=-.||+|||.|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 27 RSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred ecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 4577889999999999999999999999999999998766
No 113
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=95.00 E-value=0.025 Score=57.91 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=37.4
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
..-+.|.++|..|+..||..||+|++=-.||+|||+|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 26 LTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 35577899999999999999999999999999999998776
No 114
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=94.81 E-value=0.037 Score=55.90 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=37.0
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
.+-+.|.++|..|+..||..||+||+=-.||+|||+|..++
T Consensus 26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 26 LAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 34578899999999999999999999998999999998765
No 115
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=94.37 E-value=0.04 Score=56.45 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHHCCCCeEEeceeEcc--CCeEEEecCCCc
Q 005894 282 YAGCTDLAYQQAVDDGADIIDCTVQMSK--EGVAFCLESPDL 321 (671)
Q Consensus 282 ~PENTl~Af~~Ai~~GaD~IE~DVqlTk--DGv~Vv~HD~~L 321 (671)
.-+.|.++|.+|+..||..||+|++=-. ||+|||+|..++
T Consensus 27 ~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 27 AGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred CCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCc
Confidence 4577899999999999999999999876 689999999876
No 116
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=94.22 E-value=0.051 Score=55.76 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=36.3
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEcc--CCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSK--EGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTk--DGv~Vv~HD~~L 321 (671)
..-+.|.++|.+|+..||..||+|++=-+ ||+|||.|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 26 FSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCc
Confidence 34578999999999999999999999753 789999999877
No 117
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=94.02 E-value=0.053 Score=55.56 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccC--CeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKE--GVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkD--Gv~Vv~HD~~L 321 (671)
..-+.+.++|..|+..||..||+|++=-.| |+|||+|-.++
T Consensus 26 l~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 26 FGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCC
Confidence 345788999999999999999999999775 99999998876
No 118
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=93.37 E-value=0.09 Score=54.12 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=35.9
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEc--cCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMS--KEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlT--kDGv~Vv~HD~~L 321 (671)
..-+.|.+||..|+..||..||+|++=- .||+|||.|..++
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 26 LTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred cCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCcc
Confidence 3567889999999999999999999965 3589999999876
No 119
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=91.71 E-value=0.13 Score=59.13 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=38.7
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
..-|.+++||..|+.+||.+||+|.+=-.||.+|++|..++
T Consensus 333 lrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 333 LRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTR 373 (1267)
T ss_pred cccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEeccce
Confidence 35799999999999999999999999999999999999876
No 120
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=91.56 E-value=0.55 Score=54.41 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=41.5
Q ss_pred EEeccCC---CCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 272 IITHNGA---SGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 272 iIAHRG~---s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
--+|+-+ .-..-+.+.++|-.|++.||..||+|++=-.+|.|||+|-.+|
T Consensus 301 ~SSHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~Tl 353 (746)
T KOG0169|consen 301 SSSHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTL 353 (746)
T ss_pred eccccceecccccCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCccc
Confidence 3456643 1224489999999999999999999999999999999998766
No 121
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.21 E-value=0.42 Score=55.07 Aligned_cols=42 Identities=31% Similarity=0.532 Sum_probs=20.2
Q ss_pred CCCCCCCCCCcccCcccCCCCCCCC------CCCCCCCCCCCCCCCCC
Q 005894 602 TRPNIIYHPALTVADIVRPPLPPVT------PVSQSAPGSSGLVAPAP 643 (671)
Q Consensus 602 ~~~~~~p~p~l~~~~~~~~p~p~~~------~~~~~~~~~~~~~~~~~ 643 (671)
=||+++|.|.|.++-=..||=||.. +.+...||++|+|+|||
T Consensus 540 g~pppPppPPlpggag~PPPPpplPg~aG~PPpPppppg~~gppPPPp 587 (1102)
T KOG1924|consen 540 GPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPPPPPP 587 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCCCcCC
Confidence 3555556777776554444333332 11333445555444444
No 122
>PLN02230 phosphoinositide phospholipase C 4
Probab=89.27 E-value=0.38 Score=55.23 Aligned_cols=42 Identities=12% Similarity=0.254 Sum_probs=37.5
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLI 322 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~ 322 (671)
..-+.|.++|.+|+..||..||+|++=-.+|+|||+|..+|.
T Consensus 139 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~t 180 (598)
T PLN02230 139 LSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTLT 180 (598)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCCc
Confidence 345778899999999999999999998888999999998873
No 123
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=87.44 E-value=3.4 Score=40.17 Aligned_cols=143 Identities=16% Similarity=0.236 Sum_probs=95.2
Q ss_pred CCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC--C
Q 005894 384 KGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV--P 461 (671)
Q Consensus 384 ~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~--p 461 (671)
...|.+|.+..+.+++.+. .+++.++.- .|+.--+.-++.|.++.-. + =|.|..+..+++.|+. .
T Consensus 27 ~g~I~~l~~~v~~~~~~gK-~vfVHiDli------~Gl~~D~~~i~~L~~~~~~----d--GIISTk~~~i~~Ak~~gl~ 93 (175)
T PF04309_consen 27 TGDIGNLKDIVKRLKAAGK-KVFVHIDLI------EGLSRDEAGIEYLKEYGKP----D--GIISTKSNLIKRAKKLGLL 93 (175)
T ss_dssp SEECCCHHHHHHHHHHTT--EEEEECCGE------ETB-SSHHHHHHHHHTT------S--EEEESSHHHHHHHHHTT-E
T ss_pred cCcHHHHHHHHHHHHHcCC-EEEEEehhc------CCCCCCHHHHHHHHHcCCC----c--EEEeCCHHHHHHHHHcCCE
Confidence 4679999999999998753 577777743 2333336678888887633 2 3456789999999988 7
Q ss_pred CceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHH-cCCeEEEEec-cCccccccccc
Q 005894 462 AYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHS-ANISVYISAL-RNEYLSIAFDY 539 (671)
Q Consensus 462 ~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~-~Gl~V~vwtv-n~~~~~~~~d~ 539 (671)
.+++.|++++ ..++...+......++.-.+.|.. -+.+++++++ .+.++.+-++ .+++
T Consensus 94 tIqRiFliDS-------~al~~~~~~i~~~~PD~vEilPg~------~p~vi~~i~~~~~~PiIAGGLI~~~e------- 153 (175)
T PF04309_consen 94 TIQRIFLIDS-------SALETGIKQIEQSKPDAVEILPGV------MPKVIKKIREETNIPIIAGGLIRTKE------- 153 (175)
T ss_dssp EEEEEE-SSH-------HHHHHHHHHHHHHT-SEEEEESCC------HHHHHCCCCCCCSS-EEEESS--SHH-------
T ss_pred EEEEeeeecH-------HHHHHHHHHHhhcCCCEEEEchHH------HHHHHHHHHHhcCCCEEeecccCCHH-------
Confidence 7888888754 355555566666777666666642 3567777555 4678888765 4544
Q ss_pred CCChHHHHHHHHhhcCccEEEECChhh
Q 005894 540 LADPLIEVATFAQGVGVDGITTEFPAT 566 (671)
Q Consensus 540 ~~D~~~e~~~~l~~~GVDgIiTD~P~~ 566 (671)
++.+.+ +.|+++|.|-.++.
T Consensus 154 ------~v~~al-~aGa~aVSTS~~~L 173 (175)
T PF04309_consen 154 ------DVEEAL-KAGADAVSTSNKEL 173 (175)
T ss_dssp ------HHHHHC-CTTCEEEEE--HHH
T ss_pred ------HHHHHH-HcCCEEEEcCChHh
Confidence 788885 99999999988765
No 124
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=86.34 E-value=11 Score=38.90 Aligned_cols=160 Identities=17% Similarity=0.215 Sum_probs=89.5
Q ss_pred hHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHh-hcHH-HHHHhhceecCCCcceeecCCCCCCcCCCcHHHH
Q 005894 132 IGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSIL-KNLT-AIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVT 209 (671)
Q Consensus 132 ~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~-~~l~-~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~ 209 (671)
.+.++.......+ +.+++..+...+...+.. |.+.+ ...+ .++--+++++..- |+-.... ...+..-...+.
T Consensus 64 ~G~~~~~~~~y~~-dvplivkl~~~t~l~~~~---~~~~~~~~ve~ai~lgadAV~~~V-y~Gse~e-~~~i~~~~~v~~ 137 (265)
T COG1830 64 PGIARSVHRGYAH-DVPLIVKLNGSTSLSPDP---NDQVLVATVEDAIRLGADAVGATV-YVGSETE-REMIENISQVVE 137 (265)
T ss_pred HhHHhhcCccccC-CcCEEEEeccccccCCCc---ccceeeeeHHHHHhCCCcEEEEEE-ecCCcch-HHHHHHHHHHHH
Confidence 6777777755543 466665554443333332 32222 1222 2333355554321 1111111 233444568899
Q ss_pred HHHHcCCeEEEeeecCCcccCCCCCCCh--HHHHHH-HhhcCceeeeeEeecCCCccc---c---ccCCceEEeccCCCC
Q 005894 210 DAHNAGLQVYASGFANDIYSSYSYNFEP--EAEYLT-FIDNSQFAVDGFITDFPTTAT---E---AIDRPLIITHNGASG 280 (671)
Q Consensus 210 ~ah~~Gl~V~~wtv~~~~~~~~~~~~d~--~~e~~~-~i~~g~~~Vdgv~td~p~~~~---~---~i~~p~iIAHRG~s~ 280 (671)
+||+.|+.+.+|-.-......-+|..|+ ..-..+ -...| .|-|-|+||...- . +..-|+||| .|.+.
T Consensus 138 ~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG---ADIiK~~ytg~~e~F~~vv~~~~vpVvia-GG~k~ 213 (265)
T COG1830 138 DAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG---ADIIKTKYTGDPESFRRVVAACGVPVVIA-GGPKT 213 (265)
T ss_pred HHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhc---CCeEeecCCCChHHHHHHHHhCCCCEEEe-CCCCC
Confidence 9999999999997643211111133333 221122 23356 9999999996432 2 234777774 33345
Q ss_pred CCCchhHHHHHHHHHCCCCeE
Q 005894 281 VYAGCTDLAYQQAVDDGADII 301 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~I 301 (671)
.-.+..+.-...|++.||.++
T Consensus 214 ~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 214 ETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred CChHHHHHHHHHHHHccCcch
Confidence 588999999999999999765
No 125
>PLN02228 Phosphoinositide phospholipase C
Probab=86.26 E-value=0.77 Score=52.55 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=35.7
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCe-EEEecCCCcc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGV-AFCLESPDLI 322 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv-~Vv~HD~~L~ 322 (671)
..-+.|.++|..|+..||..||+|++=-.||. |||+|..++-
T Consensus 130 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t 172 (567)
T PLN02228 130 VNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTLT 172 (567)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCccc
Confidence 34577899999999999999999999666665 8999998773
No 126
>PLN02952 phosphoinositide phospholipase C
Probab=84.71 E-value=1.1 Score=51.76 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=36.4
Q ss_pred CCCCchhHHHHHHHHHCCCCeEEeceeEccCC-eEEEecCCCcc
Q 005894 280 GVYAGCTDLAYQQAVDDGADIIDCTVQMSKEG-VAFCLESPDLI 322 (671)
Q Consensus 280 ~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDG-v~Vv~HD~~L~ 322 (671)
...-+.|.++|.+|+..||..||+|++=-.|| .|||+|-.++.
T Consensus 146 Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t 189 (599)
T PLN02952 146 QLSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTLT 189 (599)
T ss_pred ccCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCccc
Confidence 34557889999999999999999999976665 48999998773
No 127
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=83.97 E-value=0.25 Score=54.72 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCCeEEEeeceeecCCeEEeecCCcccccccc
Q 005894 7 LSNAIMLCNLQFSKDGLGVCLSDVRLNNITTI 38 (671)
Q Consensus 7 ~~~~~iE~DVqlTkDG~~Vv~HD~~LdrtT~~ 38 (671)
.+..+.|+|||||||.+.|+.||..+..+-..
T Consensus 358 ~~ad~ve~dvqlt~D~~~vvyh~f~~~~~~~~ 389 (417)
T KOG2421|consen 358 LGADLVEMDVQLTKDLVPVVYHDFVLLVSVIR 389 (417)
T ss_pred hhhhHHHhhcccccCCceeeeccceeEEeecc
Confidence 34668899999999999999999988775554
No 128
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=83.92 E-value=0.79 Score=46.32 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=23.0
Q ss_pred CCeEEEeeceeecCCeEEeecCCccc
Q 005894 8 SNAIMLCNLQFSKDGLGVCLSDVRLN 33 (671)
Q Consensus 8 ~~~~iE~DVqlTkDG~~Vv~HD~~Ld 33 (671)
|.-.||+||+-++||++||+||.++.
T Consensus 42 GcR~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 42 GCRCIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred CCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 44579999999999999999998875
No 129
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=83.65 E-value=6.1 Score=42.20 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHCCCCeEEeceeEccCCe
Q 005894 284 GCTDLAYQQAVDDGADIIDCTVQMSKEGV 312 (671)
Q Consensus 284 ENTl~Af~~Ai~~GaD~IE~DVqlTkDGv 312 (671)
+|+-..+..+++.|+..+|+||+-..+|-
T Consensus 44 ~~s~~~i~~QLd~GvR~LELDv~~d~~gg 72 (324)
T cd08589 44 DYSHPPLADQLDSGVRQLELDVWADPEGG 72 (324)
T ss_pred cCCCccHHHHHhhCcceEEEEEeecCCcc
Confidence 47788999999999999999999866543
No 130
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=82.05 E-value=1.9 Score=45.10 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=36.6
Q ss_pred CCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 282 YAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 282 ~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
+-.+...+|..++..|+.++|+||+-.+|+.++|+|...+
T Consensus 32 ~~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 32 WGLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred cCcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcc
Confidence 3588999999999999999999999999999999998654
No 131
>PLN02223 phosphoinositide phospholipase C
Probab=81.70 E-value=1.3 Score=50.17 Aligned_cols=38 Identities=5% Similarity=0.006 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 284 GCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 284 ENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
..|..+|.+|+..||..||+|++=-.++.++|.|-.++
T Consensus 134 ~ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tl 171 (537)
T PLN02223 134 LYSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNF 171 (537)
T ss_pred cccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCce
Confidence 38899999999999999999999545556788998776
No 132
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=81.02 E-value=1.2 Score=44.99 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.9
Q ss_pred CCeEEEeeceeecCCeEEeecCCccc
Q 005894 8 SNAIMLCNLQFSKDGLGVCLSDVRLN 33 (671)
Q Consensus 8 ~~~~iE~DVqlTkDG~~Vv~HD~~Ld 33 (671)
|--.||+||+-++||++||+||.++.
T Consensus 42 GcR~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 42 GCRCIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred CCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 44569999999999999999998874
No 133
>PLN02222 phosphoinositide phospholipase C 2
Probab=80.62 E-value=1.8 Score=49.85 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=35.2
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCe-EEEecCCCcc
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGV-AFCLESPDLI 322 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv-~Vv~HD~~L~ 322 (671)
..-+.|.++|.+|+..||..||+|++=-.||. ++|+|-.+|.
T Consensus 127 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tlt 169 (581)
T PLN02222 127 LSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTLT 169 (581)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCccc
Confidence 35578889999999999999999999766665 5799987763
No 134
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=79.03 E-value=2.8 Score=39.32 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 282 YAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 282 ~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
+..|...++..+++.|+.++|++|+...++.++++|....
T Consensus 24 ~~~~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~ 63 (146)
T PF00388_consen 24 WSKTQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGITS 63 (146)
T ss_dssp HC-B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTSE
T ss_pred ccCcchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCEe
Confidence 4578889999999999999999999999999999996643
No 135
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=78.97 E-value=5.9 Score=38.52 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=39.3
Q ss_pred chHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcC-ccEEEECChhhHHHHHHhcC
Q 005894 509 ATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVG-VDGITTEFPATASKYFRSKC 575 (671)
Q Consensus 509 ~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~G-VDgIiTD~P~~~~~~~~~~~ 575 (671)
-++.++++|++|+.|++..--=+ .+..|. .--+|+.+.+ +|||||=++..+...++...
T Consensus 33 l~~~v~~~~~~gK~vfVHiDli~------Gl~~D~--~~i~~L~~~~~~dGIISTk~~~i~~Ak~~gl 92 (175)
T PF04309_consen 33 LKDIVKRLKAAGKKVFVHIDLIE------GLSRDE--AGIEYLKEYGKPDGIISTKSNLIKRAKKLGL 92 (175)
T ss_dssp HHHHHHHHHHTT-EEEEECCGEE------TB-SSH--HHHHHHHHTT--SEEEESSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCEEEEEehhcC------CCCCCH--HHHHHHHHcCCCcEEEeCCHHHHHHHHHcCC
Confidence 46899999999999999842221 223342 3344556666 99999999999998876543
No 136
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=78.47 E-value=43 Score=34.83 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=21.4
Q ss_pred CchhHHHHHHHHHCCCCeEEeceeEc
Q 005894 283 AGCTDLAYQQAVDDGADIIDCTVQMS 308 (671)
Q Consensus 283 PENTl~Af~~Ai~~GaD~IE~DVqlT 308 (671)
.|-|+...+...+.|||.||+-|=.|
T Consensus 28 ~~~~~~~~~~l~~~Gad~iElGiPfS 53 (263)
T CHL00200 28 IVITKKALKILDKKGADIIELGIPYS 53 (263)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 47788888888899999999987654
No 137
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=75.85 E-value=2 Score=44.42 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=22.6
Q ss_pred CCCeEEEeeceeecCCeEEeecCCcc
Q 005894 7 LSNAIMLCNLQFSKDGLGVCLSDVRL 32 (671)
Q Consensus 7 ~~~~~iE~DVqlTkDG~~Vv~HD~~L 32 (671)
.|.-.||+||+-++||++||+||.++
T Consensus 41 ~GcR~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 41 RGCRCVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred hCCCEEEEEeEcCCCCCEEEEeCCcc
Confidence 34557999999999999999999875
No 138
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=75.03 E-value=1e+02 Score=31.49 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHCCCCeEEece
Q 005894 284 GCTDLAYQQAVDDGADIIDCTV 305 (671)
Q Consensus 284 ENTl~Af~~Ai~~GaD~IE~DV 305 (671)
|++....+...+.|||+||+|+
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~i 35 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGI 35 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECC
Confidence 5777777777788999999997
No 139
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=74.75 E-value=13 Score=38.81 Aligned_cols=88 Identities=8% Similarity=0.043 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHHhcCCceeeecCCCc-------------ccccchHHHHHHHHcCCeEEEEeccCcccccccccCCCh
Q 005894 477 PREVVEEIKKYASAVTVTRTSVISTTES-------------FTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADP 543 (671)
Q Consensus 477 ~~~~l~~i~~~a~~v~~~~~~v~~~~~~-------------~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~ 543 (671)
+.+..+...+||...+.++..+-..+.. -...-+++|+.++++|..|.+|.-....- -..++....
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~-~~~~~~~~~ 108 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGG-NVANLEKQL 108 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTT-BHHHHHCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcch-hhHhHHHHH
Confidence 4556677778898988876555333321 01223679999999999999998877610 000112222
Q ss_pred HHHHHHHHhhcCccEEEECChhh
Q 005894 544 LIEVATFAQGVGVDGITTEFPAT 566 (671)
Q Consensus 544 ~~e~~~~l~~~GVDgIiTD~P~~ 566 (671)
...+.++ .++||.||=+||...
T Consensus 109 ~~~f~~~-~~~Gv~GvKidF~~~ 130 (273)
T PF10566_consen 109 DEAFKLY-AKWGVKGVKIDFMDR 130 (273)
T ss_dssp HHHHHHH-HHCTEEEEEEE--SS
T ss_pred HHHHHHH-HHcCCCEEeeCcCCC
Confidence 3345555 799999999999765
No 140
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=72.06 E-value=63 Score=33.32 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=66.1
Q ss_pred cEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcC--ChHHHHHHhcC-CCceEEEEeecccCCCChhH
Q 005894 404 GVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSD--DSSVLSKFQDV-PAYKKVLHIRKEVSAAPREV 480 (671)
Q Consensus 404 ~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sf--d~~~L~~lk~~-p~~~~~~l~~~~~~d~~~~~ 480 (671)
.+.+||-..... .+.+....+++.|++.|+ ++.+--| -.+.+.++++. +++- -++
T Consensus 121 ~l~lEitE~~~~---~~~~~~~~~l~~L~~~G~------~ialDDFGtG~ssl~~L~~l~~d~i---KID---------- 178 (256)
T COG2200 121 RLVLEITESALI---DDLDTALALLRQLRELGV------RIALDDFGTGYSSLSYLKRLPPDIL---KID---------- 178 (256)
T ss_pred eEEEEEeCchhh---cCHHHHHHHHHHHHHCCC------eEEEECCCCCHHHHHHHhhCCCCeE---EEC----------
Confidence 466676544331 112345556666777664 5566555 34567777766 4421 111
Q ss_pred HHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEE
Q 005894 481 VEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGIT 560 (671)
Q Consensus 481 l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIi 560 (671)
+.|...+..+... ...-..+++.+|+.|+.|.+..|.+++ ++..+ .++|||.+.
T Consensus 179 ----~~fi~~i~~~~~~--------~~iv~~iv~la~~l~~~vvaEGVEt~~-------------ql~~L-~~~G~~~~Q 232 (256)
T COG2200 179 ----RSFVRDLETDARD--------QAIVRAIVALAHKLGLTVVAEGVETEE-------------QLDLL-RELGCDYLQ 232 (256)
T ss_pred ----HHHHhhcccCcch--------HHHHHHHHHHHHHCCCEEEEeecCCHH-------------HHHHH-HHcCCCeEe
Confidence 1222222211100 111246899999999999999999997 66665 799999887
Q ss_pred ECC
Q 005894 561 TEF 563 (671)
Q Consensus 561 TD~ 563 (671)
=.+
T Consensus 233 Gyl 235 (256)
T COG2200 233 GYL 235 (256)
T ss_pred ecc
Confidence 654
No 141
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=70.22 E-value=1.1e+02 Score=31.78 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=80.2
Q ss_pred CceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccc
Q 005894 269 RPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIF 348 (671)
Q Consensus 269 ~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~ 348 (671)
++..|.|==+.---.|-|+.......+.|||+||+-+=.| |+-.+--+=... ..|. -..| .
T Consensus 11 ~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfS---------DP~aDGpvIq~a--~~~A-------L~~G-~ 71 (258)
T PRK13111 11 RKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFS---------DPVADGPVIQAA--SLRA-------LAAG-V 71 (258)
T ss_pred CccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC---------CCcccCHHHHHH--HHHH-------HHcC-C
Confidence 3445555322212347788888888899999999987654 443321110000 0000 0123 2
Q ss_pred cccCCHHHHhccCCC-cCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHH
Q 005894 349 SFDLTWTEIQSLKPQ-ISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAV 427 (671)
Q Consensus 349 i~dlT~~EL~~L~~~-~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v 427 (671)
..+-.++.+++++.. ...|.- +..+-|+-+. --++.|++.+++...-|+.| .+.+ .+-.+.+
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~v---lm~Y~N~i~~-----~G~e~f~~~~~~aGvdGvii-pDLp--------~ee~~~~ 134 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIV---LMTYYNPIFQ-----YGVERFAADAAEAGVDGLII-PDLP--------PEEAEEL 134 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEE---EEecccHHhh-----cCHHHHHHHHHHcCCcEEEE-CCCC--------HHHHHHH
Confidence 233446666666622 111210 0001122221 24788999998875446665 1221 1334567
Q ss_pred HHHHHhcCCCCCCCceEEEEcCCh--HHHHHHhcC-CCc
Q 005894 428 TKALSNATFDKQSTQQVMIQSDDS--SVLSKFQDV-PAY 463 (671)
Q Consensus 428 ~~~l~~~~~~~~~~~~vii~Sfd~--~~L~~lk~~-p~~ 463 (671)
.+.++++|+. .|.+.+-+. +.++.+.+. +.+
T Consensus 135 ~~~~~~~gl~-----~I~lvap~t~~eri~~i~~~s~gf 168 (258)
T PRK13111 135 RAAAKKHGLD-----LIFLVAPTTTDERLKKIASHASGF 168 (258)
T ss_pred HHHHHHcCCc-----EEEEeCCCCCHHHHHHHHHhCCCc
Confidence 7788888886 677666555 566777666 554
No 142
>PLN02591 tryptophan synthase
Probab=69.37 E-value=1.4e+02 Score=30.74 Aligned_cols=198 Identities=20% Similarity=0.317 Sum_probs=99.6
Q ss_pred CchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccccccccccccccccccccCCHHHHhccCC
Q 005894 283 AGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSKATSVPEIQKERGIFSFDLTWTEIQSLKP 362 (671)
Q Consensus 283 PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r~~~~~~~~~~~G~~i~dlT~~EL~~L~~ 362 (671)
+|-|+...+.-.+.|||+||+-+=.| |+-.+--+=.+. ..|. -..| ..-+-.++.+++++.
T Consensus 15 ~e~~~~~~~~l~~~Gad~iElGiPfS---------DP~aDGpvIq~a--~~rA-------L~~G-~~~~~~~~~~~~~r~ 75 (250)
T PLN02591 15 LDTTAEALRLLDACGADVIELGVPYS---------DPLADGPVIQAA--ATRA-------LEKG-TTLDSVISMLKEVAP 75 (250)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC---------CCcccCHHHHHH--HHHH-------HHcC-CCHHHHHHHHHHHhc
Confidence 47788888888899999999987654 443321110000 0000 0123 122334555666653
Q ss_pred CcCCCCCCCCCCCCCCcccccCCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCc
Q 005894 363 QISSPFDKSNPPIIRNPEAKNKGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQ 442 (671)
Q Consensus 363 ~~~~~f~~~~~~~~r~~~~~~~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 442 (671)
....|.- +..+-|+-+. .-++.|++.+++...-|+.|- +-+ .+-.+.+.+..+++|+.
T Consensus 76 ~~~~p~i---lm~Y~N~i~~-----~G~~~F~~~~~~aGv~Gviip-DLP--------~ee~~~~~~~~~~~gl~----- 133 (250)
T PLN02591 76 QLSCPIV---LFTYYNPILK-----RGIDKFMATIKEAGVHGLVVP-DLP--------LEETEALRAEAAKNGIE----- 133 (250)
T ss_pred CCCCCEE---EEecccHHHH-----hHHHHHHHHHHHcCCCEEEeC-CCC--------HHHHHHHHHHHHHcCCe-----
Confidence 2111200 0001122221 257788888887643344432 211 12235567777888876
Q ss_pred eEEEEcCCh--HHHHHHhcC-CCceEEEEeec-ccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHH
Q 005894 443 QVMIQSDDS--SVLSKFQDV-PAYKKVLHIRK-EVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHS 518 (671)
Q Consensus 443 ~vii~Sfd~--~~L~~lk~~-p~~~~~~l~~~-~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~ 518 (671)
.|.+.|-+. +-++++.+. +.+- |++.. ...... .. ....-.++++++++
T Consensus 134 ~I~lv~Ptt~~~ri~~ia~~~~gFI--Y~Vs~~GvTG~~------------------~~-------~~~~~~~~i~~vk~ 186 (250)
T PLN02591 134 LVLLTTPTTPTERMKAIAEASEGFV--YLVSSTGVTGAR------------------AS-------VSGRVESLLQELKE 186 (250)
T ss_pred EEEEeCCCCCHHHHHHHHHhCCCcE--EEeeCCCCcCCC------------------cC-------CchhHHHHHHHHHh
Confidence 666665544 346666665 5443 33321 100000 00 00111345666666
Q ss_pred c-CCeEEEE-eccCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 519 A-NISVYIS-ALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 519 ~-Gl~V~vw-tvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
. +++|.+- ++++.+ +++++ .++|+||+|.=
T Consensus 187 ~~~~Pv~vGFGI~~~e-------------~v~~~-~~~GADGvIVG 218 (250)
T PLN02591 187 VTDKPVAVGFGISKPE-------------HAKQI-AGWGADGVIVG 218 (250)
T ss_pred cCCCceEEeCCCCCHH-------------HHHHH-HhcCCCEEEEC
Confidence 3 5666553 566665 67776 48999999874
No 143
>PRK08227 autoinducer 2 aldolase; Validated
Probab=69.01 E-value=14 Score=38.47 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=84.1
Q ss_pred hHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHH-HHHhhceecCCCcceeecCCCCCCcCCCcHHHHH
Q 005894 132 IGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTA-IKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTD 210 (671)
Q Consensus 132 ~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~-i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ 210 (671)
.+.++...... + ..+++..+......-+.. .+..+....+. ++--|+++++.-..- .... ..-+..-..++++
T Consensus 62 ~G~~~~~~~~~-~-~~~lil~ls~~t~~~~~~--~~~~l~~sVeeAvrlGAdAV~~~v~~G-s~~E-~~~l~~l~~v~~e 135 (264)
T PRK08227 62 RGILRSVVPPA-T-NKPVVLRASGGNSILKEL--SNEAVAVDMEDAVRLNACAVAAQVFIG-SEYE-HQSIKNIIQLVDA 135 (264)
T ss_pred hhHHHhccccc-C-CCcEEEEEcCCCCCCCCC--CcccceecHHHHHHCCCCEEEEEEecC-CHHH-HHHHHHHHHHHHH
Confidence 67777754333 2 366766554332222111 12233333333 333377776532111 0000 1112223478899
Q ss_pred HHHcCCeEEEeeecCCcccCCCCCCC-hHHHHHHHhhcCceeeeeEeecCCC-cccc---ccCCceEEeccCCCCCCCch
Q 005894 211 AHNAGLQVYASGFANDIYSSYSYNFE-PEAEYLTFIDNSQFAVDGFITDFPT-TATE---AIDRPLIITHNGASGVYAGC 285 (671)
Q Consensus 211 ah~~Gl~V~~wtv~~~~~~~~~~~~d-~~~e~~~~i~~g~~~Vdgv~td~p~-~~~~---~i~~p~iIAHRG~s~~~PEN 285 (671)
||+.|+.+.+|.-.-+.. . + ..| .....+--.+.| .|-|-|+||. .... +...|.+|+ |++..-.+-
T Consensus 136 a~~~G~Plla~~prG~~~-~-~-~~~~ia~aaRiaaELG---ADiVK~~y~~~~f~~vv~a~~vPVvia--GG~k~~~~~ 207 (264)
T PRK08227 136 GLRYGMPVMAVTAVGKDM-V-R-DARYFSLATRIAAEMG---AQIIKTYYVEEGFERITAGCPVPIVIA--GGKKLPERD 207 (264)
T ss_pred HHHhCCcEEEEecCCCCc-C-c-hHHHHHHHHHHHHHHc---CCEEecCCCHHHHHHHHHcCCCcEEEe--CCCCCCHHH
Confidence 999999999987443221 0 0 111 111223344567 9999999997 2222 233677765 555443466
Q ss_pred hHHHHHHHHHCCCCeEEe
Q 005894 286 TDLAYQQAVDDGADIIDC 303 (671)
Q Consensus 286 Tl~Af~~Ai~~GaD~IE~ 303 (671)
.+.-.+.|++.||.++-+
T Consensus 208 ~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 208 ALEMCYQAIDEGASGVDM 225 (264)
T ss_pred HHHHHHHHHHcCCceeee
Confidence 778888899999987643
No 144
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=64.89 E-value=1.4e+02 Score=28.95 Aligned_cols=142 Identities=15% Similarity=0.224 Sum_probs=94.8
Q ss_pred CCcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC--C
Q 005894 384 KGKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV--P 461 (671)
Q Consensus 384 ~~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~--p 461 (671)
...+..|++....+++.+. .++|.++-- +|+.--+..++.+.+..-. . =|.|....++...|++ .
T Consensus 31 ~~~i~~ik~ivk~lK~~gK-~vfiHvDLv------~Gl~~~e~~i~fi~~~~~p-----d-GIISTk~~~i~~Akk~~~~ 97 (181)
T COG1954 31 TGHILNIKEIVKKLKNRGK-TVFIHVDLV------EGLSNDEVAIEFIKEVIKP-----D-GIISTKSNVIKKAKKLGIL 97 (181)
T ss_pred echhhhHHHHHHHHHhCCc-EEEEEeHHh------cccCCchHHHHHHHHhccC-----C-eeEEccHHHHHHHHHcCCc
Confidence 3579999999999998743 577776632 2333334445555554322 1 2345678888888877 8
Q ss_pred CceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHH-cCCeEEEEec-cCccccccccc
Q 005894 462 AYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHS-ANISVYISAL-RNEYLSIAFDY 539 (671)
Q Consensus 462 ~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~-~Gl~V~vwtv-n~~~~~~~~d~ 539 (671)
.+.+.|++++ ..++...+.+....++.--+.|. .-+.+++.+.+ -+.+|.+-++ +.++
T Consensus 98 aIqR~FilDS-------~Al~~~~~~i~~~~pD~iEvLPG------v~Pkvi~~i~~~t~~piIAGGLi~t~E------- 157 (181)
T COG1954 98 AIQRLFILDS-------IALEKGIKQIEKSEPDFIEVLPG------VMPKVIKEITEKTHIPIIAGGLIETEE------- 157 (181)
T ss_pred eeeeeeeecH-------HHHHHHHHHHHHcCCCEEEEcCc------ccHHHHHHHHHhcCCCEEeccccccHH-------
Confidence 8899998865 34566666666777766666664 24677887655 5788888766 4444
Q ss_pred CCChHHHHHHHHhhcCccEEEECChh
Q 005894 540 LADPLIEVATFAQGVGVDGITTEFPA 565 (671)
Q Consensus 540 ~~D~~~e~~~~l~~~GVDgIiTD~P~ 565 (671)
|....+ +.|+-++.|-+-.
T Consensus 158 ------ev~~Al-~aGA~avSTs~~~ 176 (181)
T COG1954 158 ------EVREAL-KAGAVAVSTSNTK 176 (181)
T ss_pred ------HHHHHH-HhCcEEEeecchh
Confidence 788886 9999999886543
No 145
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=63.94 E-value=15 Score=43.12 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=9.9
Q ss_pred HHHHhhcCceeeeeEeec
Q 005894 241 YLTFIDNSQFAVDGFITD 258 (671)
Q Consensus 241 ~~~~i~~g~~~Vdgv~td 258 (671)
++.|+++. |+...|+.+
T Consensus 216 lka~mNn~-~Gl~~vL~~ 232 (1102)
T KOG1924|consen 216 LKAFMNNK-FGLVLVLRR 232 (1102)
T ss_pred HHHHhccc-cceeeeecC
Confidence 44555553 667777764
No 146
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=61.68 E-value=38 Score=34.26 Aligned_cols=93 Identities=17% Similarity=0.097 Sum_probs=56.7
Q ss_pred cHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHH-HHHHhhcCceeeeeEeecCCCccc------cccCCceEEeccC
Q 005894 205 TTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAE-YLTFIDNSQFAVDGFITDFPTTAT------EAIDRPLIITHNG 277 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e-~~~~i~~g~~~Vdgv~td~p~~~~------~~i~~p~iIAHRG 277 (671)
..+++.+|+.|+++.++...+....+-.-+.+-..+ .+...+.| +|-|.+.++.... ..+..|.+++ |
T Consensus 112 ~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~G---aD~Ik~~~~~~~~~~~~i~~~~~~pvv~~--G 186 (235)
T cd00958 112 ARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELG---ADIVKTKYTGDAESFKEVVEGCPVPVVIA--G 186 (235)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHC---CCEEEecCCCCHHHHHHHHhcCCCCEEEe--C
Confidence 477888899999999977552111111111111122 44577778 9999998764211 1234676655 4
Q ss_pred C-CCCCCchhHHHHHHHHHCCCCeEE
Q 005894 278 A-SGVYAGCTDLAYQQAVDDGADIID 302 (671)
Q Consensus 278 ~-s~~~PENTl~Af~~Ai~~GaD~IE 302 (671)
+ ...-++-++.-.+.+++.||++|=
T Consensus 187 G~~~~~~~~~l~~~~~~~~~Ga~gv~ 212 (235)
T cd00958 187 GPKKDSEEEFLKMVYDAMEAGAAGVA 212 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 3 334566677778889999998763
No 147
>PRK11059 regulatory protein CsrD; Provisional
Probab=58.82 E-value=68 Score=37.75 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=34.0
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
..++..+|..|++|.+-.|.+++ ++..+ .++|||++.=.+
T Consensus 593 ~sli~~a~~~~i~viAegVEt~~-------------~~~~l-~~lGvd~~QG~~ 632 (640)
T PRK11059 593 RSLVGACAGTETQVFATGVESRE-------------EWQTL-QELGVSGGQGDF 632 (640)
T ss_pred HHHHHHHHHCCCeEEEEEeCCHH-------------HHHHH-HHhCCCeeecCc
Confidence 46788999999999999999997 77766 799999987544
No 148
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=58.01 E-value=35 Score=38.19 Aligned_cols=133 Identities=13% Similarity=0.196 Sum_probs=75.8
Q ss_pred HHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcC---------ChHHHHHHhcCCCceE
Q 005894 395 EFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSD---------DSSVLSKFQDVPAYKK 465 (671)
Q Consensus 395 ~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sf---------d~~~L~~lk~~p~~~~ 465 (671)
++++..+...+.|++..++... ..+.+.+.+.+.+++... +||-+--. ....+.++|+. .+.+
T Consensus 346 ~~L~~~~~l~VsINl~a~Dl~s----~rli~~~~~~l~~~~v~p---qQI~lElTER~f~D~~~~~~iI~r~Rea-G~~I 417 (524)
T COG4943 346 DLLRQHRDLHVSINLSASDLAS----PRLIDRLNRKLAQYQVRP---QQIALELTERTFADPKKMTPIILRLREA-GHEI 417 (524)
T ss_pred HHHHhCcceEEEEeeeehhhcC----chHHHHHHHHHHhcCcCh---HHheeehhhhhhcCchhhhHHHHHHHhc-CCeE
Confidence 3344334446777777665533 367778888888888775 45555422 23345666665 1111
Q ss_pred EEEeeccc--------CCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCccccccc
Q 005894 466 VLHIRKEV--------SAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAF 537 (671)
Q Consensus 466 ~~l~~~~~--------~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~ 537 (671)
++=+... .+++-+.++-=|.|.+.++-+... ....+.+++.+|..|+.+.+-++..++
T Consensus 418 -yIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~--------~~I~~hII~MAk~L~L~iVaEGVEtee----- 483 (524)
T COG4943 418 -YIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSAS--------HLIAPHIIEMAKSLGLKIVAEGVETEE----- 483 (524)
T ss_pred -EEccCcCcchhHHHHhhCCccceeccHHHHHhhccCccc--------chhHHHHHHHHHHcCCcEEeecccHHH-----
Confidence 2211111 112222222225566666643211 122467999999999999999999886
Q ss_pred ccCCChHHHHHHHHhhcCccE
Q 005894 538 DYLADPLIEVATFAQGVGVDG 558 (671)
Q Consensus 538 d~~~D~~~e~~~~l~~~GVDg 558 (671)
+.. |+.+.||+.
T Consensus 484 --------Q~~-~LR~~Gv~~ 495 (524)
T COG4943 484 --------QVD-WLRKRGVHY 495 (524)
T ss_pred --------HHH-HHHHcCCcc
Confidence 555 556888763
No 149
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=56.01 E-value=8.1 Score=41.25 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=17.0
Q ss_pred cHHHHHHHHcCCeEEEee
Q 005894 205 TTLVTDAHNAGLQVYASG 222 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wt 222 (671)
..+|+.||++||+||+|.
T Consensus 73 ~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 73 EFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 479999999999999998
No 150
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.58 E-value=2.5e+02 Score=29.01 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=63.3
Q ss_pred HHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeee-c-CCcccCCCCCCChHHHHHHHhhcCc--
Q 005894 174 LTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGF-A-NDIYSSYSYNFEPEAEYLTFIDNSQ-- 249 (671)
Q Consensus 174 l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv-~-~~~~~~~~~~~d~~~e~~~~i~~g~-- 249 (671)
++.+..+++.+-++...+ ..+++++.+-+.|+.|...+= . +.. +-...+..+.+.|+
T Consensus 92 v~~~~e~vdilqIgs~~~-----------~n~~LL~~va~tgkPVilk~G~~~t~~--------e~~~A~e~i~~~Gn~~ 152 (250)
T PRK13397 92 LEEAYDYLDVIQVGARNM-----------QNFEFLKTLSHIDKPILFKRGLMATIE--------EYLGALSYLQDTGKSN 152 (250)
T ss_pred HHHHHhcCCEEEECcccc-----------cCHHHHHHHHccCCeEEEeCCCCCCHH--------HHHHHHHHHHHcCCCe
Confidence 455555566655544333 126899999999999998875 2 211 11122334444442
Q ss_pred e-eee-eEeecCCCcccccc------------CCceEE--eccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccC
Q 005894 250 F-AVD-GFITDFPTTATEAI------------DRPLII--THNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKE 310 (671)
Q Consensus 250 ~-~Vd-gv~td~p~~~~~~i------------~~p~iI--AHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkD 310 (671)
+ .+. |+ +.||....+.+ +-|.|+ +|=++..++- ...-.+|+..|||++=+-+|.+.|
T Consensus 153 i~L~eRg~-~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v---~~~a~AAvA~GAdGl~IE~H~~P~ 225 (250)
T PRK13397 153 IILCERGV-RGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLL---LPAAKIAKAVGANGIMMEVHPDPD 225 (250)
T ss_pred EEEEcccc-CCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchH---HHHHHHHHHhCCCEEEEEecCCcc
Confidence 1 122 33 56776533222 257666 6876644433 355677889999955555555444
No 151
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=53.84 E-value=35 Score=36.67 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCccccccCCceEEeccCC-CC-
Q 005894 203 PATTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEAIDRPLIITHNGA-SG- 280 (671)
Q Consensus 203 ~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~i~~p~iIAHRG~-s~- 280 (671)
++..+++.+|+.|+.|++ +|.+.. +.+..++.| +|+|+.-=+... ||||. .+
T Consensus 124 p~~~~i~~l~~~gi~v~~-~v~s~~------------~A~~a~~~G---~D~iv~qG~eAG----------GH~g~~~~~ 177 (330)
T PF03060_consen 124 PPPEVIERLHAAGIKVIP-QVTSVR------------EARKAAKAG---ADAIVAQGPEAG----------GHRGFEVGS 177 (330)
T ss_dssp C-HHHHHHHHHTT-EEEE-EESSHH------------HHHHHHHTT----SEEEEE-TTSS----------EE---SSG-
T ss_pred chHHHHHHHHHcCCcccc-ccCCHH------------HHHHhhhcC---CCEEEEeccccC----------CCCCccccc
Confidence 347899999999998876 776653 478999999 999997533321 45551 11
Q ss_pred C---C---------C------chhHHHHHHHHHCCCCeEEecee
Q 005894 281 V---Y---------A------GCTDLAYQQAVDDGADIIDCTVQ 306 (671)
Q Consensus 281 ~---~---------P------ENTl~Af~~Ai~~GaD~IE~DVq 306 (671)
. . | =.+-.....|+.+|||+|.+--+
T Consensus 178 ~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTr 221 (330)
T PF03060_consen 178 TFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTR 221 (330)
T ss_dssp HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT-SEEEESHH
T ss_pred eeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcCCCEeecCCe
Confidence 0 0 0 12335667888899998876543
No 152
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=51.30 E-value=23 Score=36.22 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=35.2
Q ss_pred CCCcCC-CcHHHHHHHHc---CCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEe
Q 005894 198 TRYLEP-ATTLVTDAHNA---GLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFI 256 (671)
Q Consensus 198 ~~y~~~-~~~~V~~ah~~---Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~ 256 (671)
++||++ ....|+.|++. |+.|.+++.+|... .+++.+.| ++.|.
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~------------ar~l~~~G---~~~vm 149 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVL------------AKRLEDAG---CAAVM 149 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHH------------HHHHHHcC---CCEeC
Confidence 356544 45889999999 99999999998854 77888888 88883
No 153
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=48.32 E-value=1.2e+02 Score=29.39 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=37.9
Q ss_pred chHHHHHHHHcCCeEEEEe-----ccCcccccccccCCChHHHHHHHHh-hcCccEEEECChhhHHHHHHh
Q 005894 509 ATNILRDLHSANISVYISA-----LRNEYLSIAFDYLADPLIEVATFAQ-GVGVDGITTEFPATASKYFRS 573 (671)
Q Consensus 509 ~~~~V~~~~~~Gl~V~vwt-----vn~~~~~~~~d~~~D~~~e~~~~l~-~~GVDgIiTD~P~~~~~~~~~ 573 (671)
-++.++.++++|..||+.. +.+.+ ...+++. ..+.|||||=.+......++.
T Consensus 37 ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e-------------~~i~fi~~~~~pdGIISTk~~~i~~Akk~ 94 (181)
T COG1954 37 IKEIVKKLKNRGKTVFIHVDLVEGLSNDE-------------VAIEFIKEVIKPDGIISTKSNVIKKAKKL 94 (181)
T ss_pred HHHHHHHHHhCCcEEEEEeHHhcccCCch-------------HHHHHHHHhccCCeeEEccHHHHHHHHHc
Confidence 3578999999999998873 33333 3333443 466999999999998887664
No 154
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=47.78 E-value=1.6e+02 Score=31.27 Aligned_cols=137 Identities=26% Similarity=0.338 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHH----hcC----CCc--eEEEEeecccCCCChhHHHHHH-HHHHH
Q 005894 422 GVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKF----QDV----PAY--KKVLHIRKEVSAAPREVVEEIK-KYASA 490 (671)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~l----k~~----p~~--~~~~l~~~~~~d~~~~~l~~i~-~~a~~ 490 (671)
..+.++.+.|.+.|+. .+.|.|+.......+ |.. |.+ +..|-++..- ..+.+.++. +..+
T Consensus 175 GrV~aIR~aLd~ag~~-----~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN---~~EAlrE~~lD~~E- 245 (330)
T COG0113 175 GRVGAIREALDEAGFI-----DVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPAN---RREALREIELDIEE- 245 (330)
T ss_pred chHHHHHHHHHHcCCC-----cceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcC---HHHHHHHHHhhHhc-
Confidence 5678999999999986 888888876655443 222 211 2233322211 122333332 1222
Q ss_pred hcCCceeeecCCCcccccchHHHHHHHH-cCCeEEEEeccCccccccc---ccCCChHH---HHHHHHhhcCccEEEECC
Q 005894 491 VTVTRTSVISTTESFTTNATNILRDLHS-ANISVYISALRNEYLSIAF---DYLADPLI---EVATFAQGVGVDGITTEF 563 (671)
Q Consensus 491 v~~~~~~v~~~~~~~~~~~~~~V~~~~~-~Gl~V~vwtvn~~~~~~~~---d~~~D~~~---e~~~~l~~~GVDgIiTD~ 563 (671)
|.+.-+|-|.. .|+ .+|.++++ .++++++|-|.-|.-+.-. +-|-|... |....++..|+|+|||=+
T Consensus 246 -GAD~lMVKPal-~YL----DIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYf 319 (330)
T COG0113 246 -GADILMVKPAL-PYL----DIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYF 319 (330)
T ss_pred -CCcEEEEcCCc-hHH----HHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEeec
Confidence 23334555543 222 57777776 5899999999888633322 33555542 323333689999999999
Q ss_pred hhhHHHHHHh
Q 005894 564 PATASKYFRS 573 (671)
Q Consensus 564 P~~~~~~~~~ 573 (671)
-..+.+++++
T Consensus 320 A~e~a~~L~~ 329 (330)
T COG0113 320 AKEVAEWLKE 329 (330)
T ss_pred HHHHHHHhhc
Confidence 9999988864
No 155
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.70 E-value=18 Score=37.85 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred cHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCccccccCCceEEeccCCCCCCCc
Q 005894 205 TTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEAIDRPLIITHNGASGVYAG 284 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~i~~p~iIAHRG~s~~~PE 284 (671)
.++|+-|++.|..|..|.-....-.--+|......++..+-+.| |.||-+||-.... .
T Consensus 76 ~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~G---v~GvKidF~~~d~-------------------Q 133 (273)
T PF10566_consen 76 PELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWG---VKGVKIDFMDRDD-------------------Q 133 (273)
T ss_dssp HHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCT---EEEEEEE--SSTS-------------------H
T ss_pred HHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcC---CCEEeeCcCCCCC-------------------H
Confidence 58999999999999999987652111123333456677777778 9999999976622 2
Q ss_pred hhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCCcccccCcccccccc
Q 005894 285 CTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPDLIGKTTAATVFMSK 334 (671)
Q Consensus 285 NTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L~rtT~~~~~f~~r 334 (671)
-++.-|+..++.-| +=+..|-+|+... -|+..+.+|+-
T Consensus 134 ~~v~~y~~i~~~AA----------~~~LmvnfHg~~k--PtG~~RTyPN~ 171 (273)
T PF10566_consen 134 EMVNWYEDILEDAA----------EYKLMVNFHGATK--PTGLRRTYPNL 171 (273)
T ss_dssp HHHHHHHHHHHHHH----------HTT-EEEETTS-----TTHHHCSTTE
T ss_pred HHHHHHHHHHHHHH----------HcCcEEEecCCcC--CCcccccCccH
Confidence 23444444444433 3456788999765 35544555553
No 156
>PRK00208 thiG thiazole synthase; Reviewed
Probab=46.72 E-value=32 Score=35.29 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCcCC-CcHHHHHHHHc---CCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEee------------cCC
Q 005894 197 KTRYLEP-ATTLVTDAHNA---GLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFIT------------DFP 260 (671)
Q Consensus 197 ~~~y~~~-~~~~V~~ah~~---Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~t------------d~p 260 (671)
+++|+++ ....|+.|+.. |+.|.+++.+|... .+++.+.| ++.|.. + |
T Consensus 101 d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~------------ak~l~~~G---~~~vmPlg~pIGsg~gi~~-~ 164 (250)
T PRK00208 101 DDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVL------------AKRLEEAG---CAAVMPLGAPIGSGLGLLN-P 164 (250)
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHH------------HHHHHHcC---CCEeCCCCcCCCCCCCCCC-H
Q ss_pred CccccccC--CceEEeccCCCCCCCchhHHHHHHHHHCCCCeE
Q 005894 261 TTATEAID--RPLIITHNGASGVYAGCTDLAYQQAVDDGADII 301 (671)
Q Consensus 261 ~~~~~~i~--~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~I 301 (671)
......+. ...||.--|-+.- .--.+|+++|||++
T Consensus 165 ~~i~~i~e~~~vpVIveaGI~tp------eda~~AmelGAdgV 201 (250)
T PRK00208 165 YNLRIIIEQADVPVIVDAGIGTP------SDAAQAMELGADAV 201 (250)
T ss_pred HHHHHHHHhcCCeEEEeCCCCCH------HHHHHHHHcCCCEE
No 157
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=46.71 E-value=2.3e+02 Score=28.29 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEcCChHHHH---HHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceee
Q 005894 423 VVDAVTKALSNATFDKQSTQQVMIQSDDSSVLS---KFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSV 498 (671)
Q Consensus 423 ~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~---~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v 498 (671)
-...+.+.+.+.|+. -+-|..-++..+. ++++. |++.++- .++- +.+..+ +. -..|. +.+
T Consensus 21 ~a~~~~~al~~~Gi~-----~iEit~~t~~a~~~i~~l~~~~~~~~vGA---GTVl--~~~~a~---~a-~~aGA--~Fi 84 (204)
T TIGR01182 21 DALPLAKALIEGGLR-----VLEVTLRTPVALDAIRLLRKEVPDALIGA---GTVL--NPEQLR---QA-VDAGA--QFI 84 (204)
T ss_pred HHHHHHHHHHHcCCC-----EEEEeCCCccHHHHHHHHHHHCCCCEEEE---EeCC--CHHHHH---HH-HHcCC--CEE
Confidence 345677888888875 4445544555544 45444 5433332 2222 222222 22 22333 333
Q ss_pred -ecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhh
Q 005894 499 -ISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPAT 566 (671)
Q Consensus 499 -~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~ 566 (671)
-|. .++++++.++++|+.+..- +.++. |+...+ ++|.|.|=- ||..
T Consensus 85 vsP~------~~~~v~~~~~~~~i~~iPG-~~Tpt-------------Ei~~A~-~~Ga~~vKl-FPA~ 131 (204)
T TIGR01182 85 VSPG------LTPELAKHAQDHGIPIIPG-VATPS-------------EIMLAL-ELGITALKL-FPAE 131 (204)
T ss_pred ECCC------CCHHHHHHHHHcCCcEECC-CCCHH-------------HHHHHH-HCCCCEEEE-CCch
Confidence 332 2679999999999998884 44444 777774 899886543 4543
No 158
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=46.11 E-value=17 Score=33.69 Aligned_cols=27 Identities=11% Similarity=-0.059 Sum_probs=23.2
Q ss_pred CCCeEEEeeceeecCCeEEeecCCccc
Q 005894 7 LSNAIMLCNLQFSKDGLGVCLSDVRLN 33 (671)
Q Consensus 7 ~~~~~iE~DVqlTkDG~~Vv~HD~~Ld 33 (671)
.|.=.+|+||+.++||.++|+|+.++.
T Consensus 40 ~GvR~~dirv~~~~~~~~~v~Hg~~~~ 66 (135)
T smart00148 40 HGCRCVELDCWDGPDGEPVIYHGHTFT 66 (135)
T ss_pred hCCCEEEEEcccCCCCCEEEEECCccc
Confidence 456689999999999999999998653
No 159
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=45.90 E-value=13 Score=38.51 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=47.0
Q ss_pred cHHHHHHh-hceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCcee
Q 005894 173 NLTAIKSF-ASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFA 251 (671)
Q Consensus 173 ~l~~i~~~-a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~ 251 (671)
++..++.+ .+.+-++.+++.....+......-.++|..||+.|++|.+.+|.++.. ...+.+.|
T Consensus 163 sl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt~~q------------l~~L~~~G--- 227 (256)
T COG2200 163 SLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVETEEQ------------LDLLRELG--- 227 (256)
T ss_pred HHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeecCCHHH------------HHHHHHcC---
Confidence 45556555 566666666665544311111123589999999999999999999854 77888888
Q ss_pred eeeEee
Q 005894 252 VDGFIT 257 (671)
Q Consensus 252 Vdgv~t 257 (671)
||.+--
T Consensus 228 ~~~~QG 233 (256)
T COG2200 228 CDYLQG 233 (256)
T ss_pred CCeEee
Confidence 774443
No 160
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.80 E-value=2.6e+02 Score=30.41 Aligned_cols=117 Identities=13% Similarity=0.084 Sum_probs=64.0
Q ss_pred cHHHHHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceee
Q 005894 173 NLTAIKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAV 252 (671)
Q Consensus 173 ~l~~i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~V 252 (671)
.++.+..+++.+-++...+ ....+++.+-+.|+.|...+=-.... .+-...+..+...|+-
T Consensus 177 ~v~~~~~~~d~lqIga~~~-----------~n~~LL~~va~t~kPVllk~G~~~t~------ee~~~A~e~i~~~Gn~-- 237 (352)
T PRK13396 177 DLEKIAEVADVIQVGARNM-----------QNFSLLKKVGAQDKPVLLKRGMAATI------DEWLMAAEYILAAGNP-- 237 (352)
T ss_pred HHHHHHhhCCeEEECcccc-----------cCHHHHHHHHccCCeEEEeCCCCCCH------HHHHHHHHHHHHcCCC--
Confidence 3555666666655544333 12588999999999998876443110 0111223344444521
Q ss_pred eeEee---------cCCCcccccc---------CCceEE--eccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEccCC
Q 005894 253 DGFIT---------DFPTTATEAI---------DRPLII--THNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMSKEG 311 (671)
Q Consensus 253 dgv~t---------d~p~~~~~~i---------~~p~iI--AHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDG 311 (671)
+-+++ .||....+.. +-|.|+ +|-.+ +.+.+...-.+|+..|||++=+-+|.|.|.
T Consensus 238 ~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G---~sd~~~~~a~AAva~GAdGliIE~H~~pd~ 313 (352)
T PRK13396 238 NVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTG---KSEYVPSMAMAAIAAGTDSLMIEVHPNPAK 313 (352)
T ss_pred eEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCC---cHHHHHHHHHHHHhhCCCeEEEEecCCccc
Confidence 23333 3553333311 134433 56543 344566788899999999666667776654
No 161
>PRK06852 aldolase; Validated
Probab=43.65 E-value=60 Score=34.49 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=56.6
Q ss_pred cHHHHHHHHcCCeEEEeeecCCcccCCCCCCCh---HHHHHHHhhcCceeeeeEeecCCC--------ccccc---c-CC
Q 005894 205 TTLVTDAHNAGLQVYASGFANDIYSSYSYNFEP---EAEYLTFIDNSQFAVDGFITDFPT--------TATEA---I-DR 269 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~---~~e~~~~i~~g~~~Vdgv~td~p~--------~~~~~---i-~~ 269 (671)
..++++||+.|+.+.+|..-.-.... -..|| ....+-..+.| .|-|-|+||. ..... . ..
T Consensus 157 ~~v~~ea~~~GlPll~~~yprG~~i~--~~~~~~~ia~aaRiaaELG---ADIVKv~y~~~~~~g~~e~f~~vv~~~g~v 231 (304)
T PRK06852 157 AQIIYEAHKHGLIAVLWIYPRGKAVK--DEKDPHLIAGAAGVAACLG---ADFVKVNYPKKEGANPAELFKEAVLAAGRT 231 (304)
T ss_pred HHHHHHHHHhCCcEEEEeeccCcccC--CCccHHHHHHHHHHHHHHc---CCEEEecCCCcCCCCCHHHHHHHHHhCCCC
Confidence 47889999999999999875432211 11222 11233445567 9999999993 22222 2 34
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHH-CCCCeEE
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVD-DGADIID 302 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~-~GaD~IE 302 (671)
|.+|+ |++..-.+-.+.-.+.|++ .||.++=
T Consensus 232 pVvia--GG~k~~~~e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 232 KVVCA--GGSSTDPEEFLKQLYEQIHISGASGNA 263 (304)
T ss_pred cEEEe--CCCCCCHHHHHHHHHHHHHHcCCceee
Confidence 55654 5554444557777777888 8997763
No 162
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.55 E-value=3.8e+02 Score=28.40 Aligned_cols=140 Identities=10% Similarity=0.093 Sum_probs=83.7
Q ss_pred EEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCC-hHHHHHHhcC---CCceEEEEeecccCCCChhH
Q 005894 405 VLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDD-SSVLSKFQDV---PAYKKVLHIRKEVSAAPREV 480 (671)
Q Consensus 405 i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd-~~~L~~lk~~---p~~~~~~l~~~~~~d~~~~~ 480 (671)
-..||+.+.. .+-=.++|.+.+.......+.+-.+|. .+-...+... +..++.++.++-...++++.
T Consensus 117 ~vfEvD~Pev---------i~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~ 187 (297)
T COG3315 117 RVFEVDLPEV---------IEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEA 187 (297)
T ss_pred eEEECCCcHH---------HHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHH
Confidence 5778887642 222345567776544333577777776 7778888754 78899999988777777777
Q ss_pred HHHHHHHHHHhcCCceeeecCCCcccccchHHHHHH--HHcCCeE---------EEEeccCcccccccccCCChHHHHHH
Q 005894 481 VEEIKKYASAVTVTRTSVISTTESFTTNATNILRDL--HSANISV---------YISALRNEYLSIAFDYLADPLIEVAT 549 (671)
Q Consensus 481 l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~--~~~Gl~V---------~vwtvn~~~~~~~~d~~~D~~~e~~~ 549 (671)
..++.++......+.+.+.-... .....+... +..+... ..|...+.. ++..
T Consensus 188 v~~ll~~I~~~~~~gS~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-------------e~~~ 250 (297)
T COG3315 188 VDRLLSRIAALSAPGSRVAFDYS----LPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA-------------EIET 250 (297)
T ss_pred HHHHHHHHHHhCCCCceEEEecc----ccHHHHhcccchhhhhhccccccccccceeccCCHH-------------HHHH
Confidence 77766665555544444433221 122333332 2223333 334444333 7888
Q ss_pred HHhhcCccEEEEC-ChhhHHHH
Q 005894 550 FAQGVGVDGITTE-FPATASKY 570 (671)
Q Consensus 550 ~l~~~GVDgIiTD-~P~~~~~~ 570 (671)
++.+.|....... ..+...++
T Consensus 251 ~l~~~g~~~~~~~~~~~~~~~~ 272 (297)
T COG3315 251 WLAERGWRSTLNRTTEDLAARY 272 (297)
T ss_pred HHHhcCEEEEecCCcHHHHHHh
Confidence 8888998888884 44444443
No 163
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.60 E-value=3.9e+02 Score=26.80 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=71.1
Q ss_pred HHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHH---HHHHhcC-CCceEEE
Q 005894 392 GFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSV---LSKFQDV-PAYKKVL 467 (671)
Q Consensus 392 EvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~---L~~lk~~-p~~~~~~ 467 (671)
++++.+... ++.--|..... +-...+.+.|.+.|+.. =.|-+. ++.. ++.+++. +.-+-+.
T Consensus 5 ~~~~~l~~~---~vi~vir~~~~-------~~a~~~~~al~~~Gi~~---iEit~~--~~~a~~~i~~l~~~~~~~p~~~ 69 (213)
T PRK06552 5 EILTKLKAN---GVVAVVRGESK-------EEALKISLAVIKGGIKA---IEVTYT--NPFASEVIKELVELYKDDPEVL 69 (213)
T ss_pred HHHHHHHHC---CEEEEEECCCH-------HHHHHHHHHHHHCCCCE---EEEECC--CccHHHHHHHHHHHcCCCCCeE
Confidence 456666665 45555554332 34456788888888752 133333 3444 4455443 3212222
Q ss_pred EeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHH
Q 005894 468 HIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEV 547 (671)
Q Consensus 468 l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~ 547 (671)
+-..++- +.+. ..+ |...|. +++.. -...+++++.++++|+.+..-+.+.. |+
T Consensus 70 vGaGTV~--~~~~---~~~-a~~aGA--~Fivs-----P~~~~~v~~~~~~~~i~~iPG~~T~~--------------E~ 122 (213)
T PRK06552 70 IGAGTVL--DAVT---ARL-AILAGA--QFIVS-----PSFNRETAKICNLYQIPYLPGCMTVT--------------EI 122 (213)
T ss_pred EeeeeCC--CHHH---HHH-HHHcCC--CEEEC-----CCCCHHHHHHHHHcCCCEECCcCCHH--------------HH
Confidence 2222221 2222 222 223333 33322 12367999999999999888766544 67
Q ss_pred HHHHhhcCccEEEECCh
Q 005894 548 ATFAQGVGVDGITTEFP 564 (671)
Q Consensus 548 ~~~l~~~GVDgIiTD~P 564 (671)
.+.+ ++|+|.|-- ||
T Consensus 123 ~~A~-~~Gad~vkl-FP 137 (213)
T PRK06552 123 VTAL-EAGSEIVKL-FP 137 (213)
T ss_pred HHHH-HcCCCEEEE-CC
Confidence 7774 899999987 66
No 164
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=39.34 E-value=52 Score=29.73 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHHHhcCC-CCCCCCCcccCCC
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYFRSKCS-DDVEKQDFRILPV 589 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~~~~~~-~~~~~~p~~~~p~ 589 (671)
.....+.++|+-+-+.|+-+.. +.|+=-.+.|.|+.+.+.++.... ....+.-.--.+.
T Consensus 19 ~~~~~L~eagINiRA~tiAdt~--------------------dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD 78 (142)
T COG4747 19 SVANKLKEAGINIRAFTIADTG--------------------DFGIIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMED 78 (142)
T ss_pred HHHHHHHHcCCceEEEEecccc--------------------CcceEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecC
Confidence 5677899999999999997764 567778889999999999988765 3334444456778
Q ss_pred CCCcccccc
Q 005894 590 VPGELLDVT 598 (671)
Q Consensus 590 ~~g~l~~~~ 598 (671)
.||+|-..+
T Consensus 79 ~PG~l~~I~ 87 (142)
T COG4747 79 VPGGLSRIA 87 (142)
T ss_pred CCCcHHHHH
Confidence 888876543
No 165
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=39.31 E-value=46 Score=32.10 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=42.5
Q ss_pred HHHHHHhhcCceeeeeEeecC--CCcccccc-C-CceEEeccCCCCCC--CchhHHHHHHHHHCCCCeEEec
Q 005894 239 AEYLTFIDNSQFAVDGFITDF--PTTATEAI-D-RPLIITHNGASGVY--AGCTDLAYQQAVDDGADIIDCT 304 (671)
Q Consensus 239 ~e~~~~i~~g~~~Vdgv~td~--p~~~~~~i-~-~p~iIAHRG~s~~~--PENTl~Af~~Ai~~GaD~IE~D 304 (671)
..++++++.| |+|++..- -....... + +..++++-|+.... .+.++..-+.|.+.|||++.+-
T Consensus 17 ~~~~~~~~~g---v~gi~~~g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~ 85 (201)
T cd00945 17 KLCDEAIEYG---FAAVCVNPGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHHHHhC---CcEEEECHHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 3456677778 99987752 11111122 3 46677777765433 7889999999999999999873
No 166
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=37.80 E-value=31 Score=41.16 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=51.2
Q ss_pred hhcCceeeeeEeecCCC-----ccccccC------Cc-----eEEeccCCC--C-CCCchhHHHHHHHHHCCCCeEEece
Q 005894 245 IDNSQFAVDGFITDFPT-----TATEAID------RP-----LIITHNGAS--G-VYAGCTDLAYQQAVDDGADIIDCTV 305 (671)
Q Consensus 245 i~~g~~~Vdgv~td~p~-----~~~~~i~------~p-----~iIAHRG~s--~-~~PENTl~Af~~Ai~~GaD~IE~DV 305 (671)
...|.++.||.+.+... .+...++ .| +-.+|+-+- + ..--.+.+-|++++-.||.+||+|+
T Consensus 283 a~~gqms~dgf~ryl~gdEn~i~a~~~l~l~~dM~qPl~hYFINSSHNTYlTg~Ql~g~sSvEmYRQvLLsGcRCVELDc 362 (1189)
T KOG1265|consen 283 AEKGQMSTDGFVRYLMGDENAIVALDKLDLVTDMDQPLSHYFINSSHNTYLTGGQLGGKSSVEMYRQVLLSGCRCVELDC 362 (1189)
T ss_pred hhccccchhhhHHHhhCCccccccHHHHHhhhhhccchhhhhccccccceeecccccCcchHHHHHHHHHhcCceEEeee
Confidence 34577788888775443 2222111 22 234555321 1 1123378999999999999999999
Q ss_pred eE--ccCCeEEEecCCCc
Q 005894 306 QM--SKEGVAFCLESPDL 321 (671)
Q Consensus 306 ql--TkDGv~Vv~HD~~L 321 (671)
+= ++|++||+-|-.+.
T Consensus 363 Wdgk~~d~EPvITHG~tm 380 (1189)
T KOG1265|consen 363 WDGKGEDEEPVITHGFTM 380 (1189)
T ss_pred ecCCCCCCCceeecccch
Confidence 96 77899999999876
No 167
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=37.72 E-value=2.6e+02 Score=27.93 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=42.3
Q ss_pred CChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHc-CCeEEE-EeccCcccccccccCCChHHHHHHHHhh
Q 005894 476 APREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSA-NISVYI-SALRNEYLSIAFDYLADPLIEVATFAQG 553 (671)
Q Consensus 476 ~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~-Gl~V~v-wtvn~~~~~~~~d~~~D~~~e~~~~l~~ 553 (671)
.+++........|+..+...-++...+......+.++++++++. ++++.+ .++++.+ +.++++ +
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e-------------~a~~l~-~ 196 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPE-------------IAYEIV-L 196 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHH-------------HHHHHH-H
Confidence 33444444444456666643333221212223567899988775 566544 4677776 777774 8
Q ss_pred cCccEEEE
Q 005894 554 VGVDGITT 561 (671)
Q Consensus 554 ~GVDgIiT 561 (671)
.|+|+|++
T Consensus 197 ~GAD~VVV 204 (205)
T TIGR01769 197 AGADAIVT 204 (205)
T ss_pred cCCCEEEe
Confidence 89999985
No 168
>PRK10060 RNase II stability modulator; Provisional
Probab=37.17 E-value=3e+02 Score=32.55 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=32.8
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
..++..+|+.|+.|.+-.|.+++ +...+ .++|||.+.=-+
T Consensus 601 ~~ii~~a~~lg~~viAeGVEt~~-------------q~~~l-~~~G~d~~QGy~ 640 (663)
T PRK10060 601 RAIVAVAQALNLQVIAEGVETAK-------------EDAFL-TKNGVNERQGFL 640 (663)
T ss_pred HHHHHHHHHCCCcEEEecCCCHH-------------HHHHH-HHcCCCEEecCc
Confidence 35788899999999999999996 56655 799999887653
No 169
>PRK10551 phage resistance protein; Provisional
Probab=37.14 E-value=2.9e+02 Score=31.75 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=32.6
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
..+++.+|+.|+.|.+-+|.+++ +...+ .++|||.+.=-
T Consensus 457 ~~ii~la~~lgi~vVAEGVEt~~-------------q~~~L-~~~Gv~~~QGy 495 (518)
T PRK10551 457 DAVLTLAKRLNMLTVAEGVETPE-------------QARWL-RERGVNFLQGY 495 (518)
T ss_pred HHHHHHHHHCCCEEEEEeCCcHH-------------HHHHH-HHcCCCEEEcC
Confidence 36888999999999999999986 55554 79999988764
No 170
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=36.72 E-value=1.4e+02 Score=32.03 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=50.8
Q ss_pred cHHHHHHHHcC--CeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeec-CC-----Ccc-------------
Q 005894 205 TTLVTDAHNAG--LQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITD-FP-----TTA------------- 263 (671)
Q Consensus 205 ~~~V~~ah~~G--l~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td-~p-----~~~------------- 263 (671)
.++++..|+++ +.|.+.++.+... .+++++.| +|+|..- -| ...
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~v~t~~~------------A~~l~~aG---aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~ 187 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGNVVTAEA------------ARDLIDAG---ADGVKVGIGPGSICTTRIVTGVGVPQATAVA 187 (325)
T ss_pred HHHHHHHHHHCCCceEEECCCCCHHH------------HHHHHhcC---CCEEEECCCCCcCcccceeCCCCCCHHHHHH
Confidence 36788888887 8888888877644 77899999 9998741 11 000
Q ss_pred --ccccC--CceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEe
Q 005894 264 --TEAID--RPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDC 303 (671)
Q Consensus 264 --~~~i~--~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~ 303 (671)
..+.+ ..-||+-.|.. |-.-+.+|+++|||++=+
T Consensus 188 ~v~~~~~~~~vpVIA~GGI~------~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 188 DVAAAARDYGVPVIADGGIR------TSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHhhcCCcEEecCCCC------CHHHHHHHHHcCCCEEEe
Confidence 00011 12255555543 236678889999999877
No 171
>PRK13561 putative diguanylate cyclase; Provisional
Probab=36.33 E-value=2.1e+02 Score=33.59 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=36.6
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC---hhhHHHH
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF---PATASKY 570 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~---P~~~~~~ 570 (671)
..+++.+|..|+.|.+-.|.+++ +...+ .++|||++.=-+ |..+.++
T Consensus 594 ~~i~~~a~~l~i~viAegVE~~~-------------~~~~l-~~~g~d~~QG~~~~~P~~~~~~ 643 (651)
T PRK13561 594 AAIIMLAQSLNLQVIAEGVETEA-------------QRDWL-LKAGVGIAQGFLFARALPIEIF 643 (651)
T ss_pred HHHHHHHHHCCCcEEEecCCCHH-------------HHHHH-HhcCCCEEeCCcccCCCCHHHH
Confidence 35788999999999999999997 66655 799999887654 4444444
No 172
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=36.19 E-value=1.1e+02 Score=32.54 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=51.9
Q ss_pred cHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcccc---------------ccCC
Q 005894 205 TTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATE---------------AIDR 269 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~---------------~i~~ 269 (671)
..+++.+|+.|+.|++ ++.+. .+.+++.+.| +|+|+..-...... .++-
T Consensus 99 ~~~i~~lk~~g~~v~~-~v~s~------------~~a~~a~~~G---aD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~i 162 (307)
T TIGR03151 99 GKYIPRLKENGVKVIP-VVASV------------ALAKRMEKAG---ADAVIAEGMESGGHIGELTTMALVPQVVDAVSI 162 (307)
T ss_pred HHHHHHHHHcCCEEEE-EcCCH------------HHHHHHHHcC---CCEEEEECcccCCCCCCCcHHHHHHHHHHHhCC
Confidence 4699999999999875 66554 3367888888 99998632211111 1123
Q ss_pred ceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEece
Q 005894 270 PLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTV 305 (671)
Q Consensus 270 p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DV 305 (671)
| ||+-.|-.. -..+.+|+..|||+|-+.-
T Consensus 163 P-viaaGGI~~------~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 163 P-VIAAGGIAD------GRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred C-EEEECCCCC------HHHHHHHHHcCCCEeecch
Confidence 4 566666432 3568888889999988765
No 173
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=35.40 E-value=6e+02 Score=27.39 Aligned_cols=16 Identities=38% Similarity=0.250 Sum_probs=13.1
Q ss_pred HHHHHHHHCCCCeEEe
Q 005894 288 LAYQQAVDDGADIIDC 303 (671)
Q Consensus 288 ~Af~~Ai~~GaD~IE~ 303 (671)
.+=..|+.+||++||-
T Consensus 207 ~~~~aAvalGA~iIEk 222 (329)
T TIGR03569 207 EAPIAAVALGATVIEK 222 (329)
T ss_pred HHHHHHHHcCCCEEEe
Confidence 4448889999999993
No 174
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.69 E-value=5.2e+02 Score=25.90 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=74.7
Q ss_pred HHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChH---HHHHHhcC-CCceE
Q 005894 390 LDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSS---VLSKFQDV-PAYKK 465 (671)
Q Consensus 390 LeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~---~L~~lk~~-p~~~~ 465 (671)
..++++.+.+. ++.--+..... +-...+.+.+.+.|.. -+=|.--.+. .++.+++. |++.+
T Consensus 5 ~~~~~~~l~~~---~~iaV~r~~~~-------~~a~~i~~al~~~Gi~-----~iEitl~~~~~~~~I~~l~~~~p~~~I 69 (212)
T PRK05718 5 KTSIEEILRAG---PVVPVIVINKL-------EDAVPLAKALVAGGLP-----VLEVTLRTPAALEAIRLIAKEVPEALI 69 (212)
T ss_pred HHHHHHHHHHC---CEEEEEEcCCH-------HHHHHHHHHHHHcCCC-----EEEEecCCccHHHHHHHHHHHCCCCEE
Confidence 34666777665 45444544322 2345677788888875 3333322333 45566655 66443
Q ss_pred EEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHH
Q 005894 466 VLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLI 545 (671)
Q Consensus 466 ~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~ 545 (671)
+-- ..- +. ++... +-..|. +.+.. ...++++++.+++.|+.+..-...-.
T Consensus 70 GAG---TVl--~~---~~a~~-a~~aGA--~Fivs-----P~~~~~vi~~a~~~~i~~iPG~~Tpt-------------- 119 (212)
T PRK05718 70 GAG---TVL--NP---EQLAQ-AIEAGA--QFIVS-----PGLTPPLLKAAQEGPIPLIPGVSTPS-------------- 119 (212)
T ss_pred EEe---ecc--CH---HHHHH-HHHcCC--CEEEC-----CCCCHHHHHHHHHcCCCEeCCCCCHH--------------
Confidence 332 211 12 22222 222333 22222 12356899999999988765443222
Q ss_pred HHHHHHhhcCccEEEECChhhH---HHHHHh
Q 005894 546 EVATFAQGVGVDGITTEFPATA---SKYFRS 573 (671)
Q Consensus 546 e~~~~l~~~GVDgIiTD~P~~~---~~~~~~ 573 (671)
|+.+. .++|++.|-- ||... ..|++.
T Consensus 120 Ei~~a-~~~Ga~~vKl-FPa~~~gg~~~lk~ 148 (212)
T PRK05718 120 ELMLG-MELGLRTFKF-FPAEASGGVKMLKA 148 (212)
T ss_pred HHHHH-HHCCCCEEEE-ccchhccCHHHHHH
Confidence 57777 4999999888 88763 355544
No 175
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=32.67 E-value=5.3e+02 Score=26.01 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=35.3
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHH
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATAS 568 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~ 568 (671)
...++.+|+.|+.+++=.+++.+ |. +-.+++.++|+|.++--+.--+.
T Consensus 96 ~~~i~~A~~~~~~v~iDl~~~~~----------~~-~~~~~l~~~gvd~~~~H~g~D~q 143 (217)
T COG0269 96 KKAIKVAKEYGKEVQIDLIGVWD----------PE-QRAKWLKELGVDQVILHRGRDAQ 143 (217)
T ss_pred HHHHHHHHHcCCeEEEEeecCCC----------HH-HHHHHHHHhCCCEEEEEecccHh
Confidence 35788999999999999888873 34 34445556999999976654443
No 176
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.65 E-value=1.9e+02 Score=31.31 Aligned_cols=93 Identities=16% Similarity=0.274 Sum_probs=58.0
Q ss_pred cHHHHHHHHcCCeEEEe--eecCCcc--cCCCCC-CCh---HHHHHHHhh--cCceeeeeEeecCCCcc-----------
Q 005894 205 TTLVTDAHNAGLQVYAS--GFANDIY--SSYSYN-FEP---EAEYLTFID--NSQFAVDGFITDFPTTA----------- 263 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~w--tv~~~~~--~~~~~~-~d~---~~e~~~~i~--~g~~~Vdgv~td~p~~~----------- 263 (671)
..+.+++++.|++++.. +...... .+-.|. .+| ...++.+.+ .| +|.+-+.+|...
T Consensus 146 ~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elG---aDvlKve~p~~~~~veg~~~~~~ 222 (340)
T PRK12858 146 ERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYG---VDVLKVEVPVDMKFVEGFDGFEE 222 (340)
T ss_pred HHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccC---CeEEEeeCCCCcccccccccccc
Confidence 47889999999998884 5443211 111121 122 222344442 56 999999999653
Q ss_pred --------------ccccCCceEEeccCCCCCCCchhHHHHHHHHHCCC--CeEEe
Q 005894 264 --------------TEAIDRPLIITHNGASGVYAGCTDLAYQQAVDDGA--DIIDC 303 (671)
Q Consensus 264 --------------~~~i~~p~iIAHRG~s~~~PENTl~Af~~Ai~~Ga--D~IE~ 303 (671)
..+...|.||.=.|.+ .+--+...+.|++.|| .++=|
T Consensus 223 ~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~---~~~f~~~l~~A~~aGa~f~Gvl~ 275 (340)
T PRK12858 223 AYTQEEAFKLFREQSDATDLPFIFLSAGVS---PELFRRTLEFACEAGADFSGVLC 275 (340)
T ss_pred cccHHHHHHHHHHHHhhCCCCEEEECCCCC---HHHHHHHHHHHHHcCCCccchhh
Confidence 1124588999877752 2446777888899999 56544
No 177
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=32.22 E-value=5.3e+02 Score=28.14 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=51.1
Q ss_pred cHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCc--eeee-eEeecCCCcccccc------------CC
Q 005894 205 TTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQ--FAVD-GFITDFPTTATEAI------------DR 269 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~--~~Vd-gv~td~p~~~~~~i------------~~ 269 (671)
..+++.+-+.|+.|...|=-.... .+-...+..+...|+ +.+- -.++.||....+.+ +-
T Consensus 215 ~~LL~~~a~~gkPVilk~G~~~t~------~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~ 288 (360)
T PRK12595 215 FELLKAAGRVNKPVLLKRGLSATI------EEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHL 288 (360)
T ss_pred HHHHHHHHccCCcEEEeCCCCCCH------HHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCC
Confidence 589999999999999887532100 011122334444442 2221 13345664433322 24
Q ss_pred ceEE--eccCCCCCCCchhHHHHHHHHHCCCCeEEeceeE
Q 005894 270 PLII--THNGASGVYAGCTDLAYQQAVDDGADIIDCTVQM 307 (671)
Q Consensus 270 p~iI--AHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVql 307 (671)
|.++ .|=++.. |.....-..|+..|||++=+-+|.
T Consensus 289 PV~~d~~Hs~G~r---~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 289 PVMVDVTHSTGRR---DLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CEEEeCCCCCcch---hhHHHHHHHHHHcCCCeEEEEecC
Confidence 6666 6765433 233446677889999755555554
No 178
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=31.70 E-value=1.4e+02 Score=30.83 Aligned_cols=117 Identities=15% Similarity=0.289 Sum_probs=67.3
Q ss_pred cCCceEEEe--------CCChHHHHHhhhhcCCCCcceEEEecCCCCcCC-CCCCCHHHHhhcHHHHHHh-hceecCCCc
Q 005894 120 LISNVYYIS--------SPEIGFLKTMDRKVDHNTTKLVFMVLEPNAVEP-TTNQTYGSILKNLTAIKSF-ASGIVVPKS 189 (671)
Q Consensus 120 ~~~~~~~is--------Sf~~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~-~~~~~y~~~~~~l~~i~~~-a~~i~~~~~ 189 (671)
.|-+++=++ +++.++++.+++..+ .++. .+..+..... -+...+..+...+..++.. ++|+...
T Consensus 20 ~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~---ipv~-vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G-- 93 (248)
T PRK11572 20 AGADRIELCAAPKEGGLTPSLGVLKSVRERVT---IPVH-PIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTG-- 93 (248)
T ss_pred cCCCEEEEccCcCCCCcCCCHHHHHHHHHhcC---CCeE-EEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 344566554 488999999997552 4543 2344432111 1222333444455555554 6776543
Q ss_pred ceeecCCCCCCcC--CCcHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeec
Q 005894 190 YIIPVNNKTRYLE--PATTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITD 258 (671)
Q Consensus 190 ~i~p~~~~~~y~~--~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td 258 (671)
.+ ++ ++-+. ....+++.|+ |+ .|||....+ ...||...+.++++.| ++.|+|-
T Consensus 94 ~L---~~-dg~vD~~~~~~Li~~a~--~~---~vTFHRAfD----~~~d~~~al~~l~~lG---~~rILTS 148 (248)
T PRK11572 94 VL---DV-DGHVDMPRMRKIMAAAG--PL---AVTFHRAFD----MCANPLNALKQLADLG---VARILTS 148 (248)
T ss_pred eE---CC-CCCcCHHHHHHHHHHhc--CC---ceEEechhh----ccCCHHHHHHHHHHcC---CCEEECC
Confidence 22 22 22221 1245666663 44 578876533 4568999999999999 9999983
No 179
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=31.57 E-value=1.4e+02 Score=32.35 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCceEEEeCCChHHHHHhhhhcCCCCcceEEEecCCCCc-CCCCCCCHHHHhhcHHHHHHh-hceecCCC
Q 005894 111 KYITEYLQKLISNVYYISSPEIGFLKTMDRKVDHNTTKLVFMVLEPNAV-EPTTNQTYGSILKNLTAIKSF-ASGIVVPK 188 (671)
Q Consensus 111 ~~v~~~l~~~~~~~~~isSf~~~~L~~i~~~~~~~~~~~v~~~~~~~~~-~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~ 188 (671)
+++++.+.+.+.+. ++.. .+.++........ +.+++..+...... .+. .....+...++..-.. |+++++.-
T Consensus 94 ~~~i~~a~~~g~dA-v~~~--~G~l~~~~~~~~~-~iplIlkln~~t~l~~~~--~~~~~l~~sVedAlrLGAdAV~~tv 167 (348)
T PRK09250 94 ENIVKLAIEAGCNA-VAST--LGVLEAVARKYAH-KIPFILKLNHNELLSYPN--TYDQALTASVEDALRLGAVAVGATI 167 (348)
T ss_pred HHHHHHHHhcCCCE-EEeC--HHHHHhccccccC-CCCEEEEeCCCCCCCCCC--CCcccceecHHHHHHCCCCEEEEEE
Confidence 44555555544222 2222 7888874433333 46777665443222 111 1223333334443333 77776532
Q ss_pred cceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcc--cCCCCCCChHH---HHHHHhhcCceeeeeEeecCCCcc
Q 005894 189 SYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIY--SSYSYNFEPEA---EYLTFIDNSQFAVDGFITDFPTTA 263 (671)
Q Consensus 189 ~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~--~~~~~~~d~~~---e~~~~i~~g~~~Vdgv~td~p~~~ 263 (671)
..- .... ..-+..-..++++||+.|+.+.+|..-.-.. ....|.++|.. ..+-....| .|-|-+.||...
T Consensus 168 y~G-s~~E-~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG---ADIVKv~yp~~~ 242 (348)
T PRK09250 168 YFG-SEES-RRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG---ADIIKQKLPTNN 242 (348)
T ss_pred ecC-CHHH-HHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc---CCEEEecCCCCh
Confidence 111 0000 0112223478899999999999998754321 12234444421 123334456 999999999642
Q ss_pred cc---c----------------------------c---CCceEEeccCCCCCCCchhHHHHHHH---HHCCCCeE
Q 005894 264 TE---A----------------------------I---DRPLIITHNGASGVYAGCTDLAYQQA---VDDGADII 301 (671)
Q Consensus 264 ~~---~----------------------------i---~~p~iIAHRG~s~~~PENTl~Af~~A---i~~GaD~I 301 (671)
.. . . ..|++++ |++..-.+-.+...+.| ++.||.++
T Consensus 243 ~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviA--GG~k~~~~e~L~~v~~a~~~i~aGa~Gv 315 (348)
T PRK09250 243 GGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINS--GGASKGEDDLLDAVRTAVINKRAGGMGL 315 (348)
T ss_pred hhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEe--CCCCCCHHHHHHHHHHHHHhhhcCCcch
Confidence 21 1 1 2455554 54444446677888888 88898665
No 180
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=30.91 E-value=1.2e+02 Score=30.15 Aligned_cols=108 Identities=16% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCChHHHHHhhhhcCCCCcceEEEecCCCCcCCCCCCCHHHHhhcHHHHHHh-hceecCCCcceeecCCCCCCc--CCCc
Q 005894 129 SPEIGFLKTMDRKVDHNTTKLVFMVLEPNAVEPTTNQTYGSILKNLTAIKSF-ASGIVVPKSYIIPVNNKTRYL--EPAT 205 (671)
Q Consensus 129 Sf~~~~L~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~l~~i~~~-a~~i~~~~~~i~p~~~~~~y~--~~~~ 205 (671)
+++.++++.+++.. ..++.-.+-....-.--+...+..|...+..++.. ++|+-+..- +. ++-+ ....
T Consensus 36 TPS~g~i~~~~~~~---~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L-----~~-dg~iD~~~~~ 106 (201)
T PF03932_consen 36 TPSLGLIRQAREAV---DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGAL-----TE-DGEIDEEALE 106 (201)
T ss_dssp ---HHHHHHHHHHT---TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--B-----ET-TSSB-HHHHH
T ss_pred CcCHHHHHHHHhhc---CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeE-----CC-CCCcCHHHHH
Q ss_pred HHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEee
Q 005894 206 TLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFIT 257 (671)
Q Consensus 206 ~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~t 257 (671)
.+++.|+ |++ |||....+ ...||...+.++++.| ++.|+|
T Consensus 107 ~Li~~a~--~~~---~tFHRAfD----~~~d~~~al~~L~~lG---~~rVLT 146 (201)
T PF03932_consen 107 ELIEAAG--GMP---VTFHRAFD----EVPDPEEALEQLIELG---FDRVLT 146 (201)
T ss_dssp HHHHHHT--TSE---EEE-GGGG----GSSTHHHHHHHHHHHT----SEEEE
T ss_pred HHHHhcC--CCe---EEEeCcHH----HhCCHHHHHHHHHhcC---CCEEEC
No 181
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=30.55 E-value=2.9e+02 Score=24.57 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcCCCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCC
Q 005894 423 VVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDVPAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTT 502 (671)
Q Consensus 423 ~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~ 502 (671)
+.-++++.+++.|+. -|++-|-....-...+.. ...+........-+--..+.+.+.+..-++ ..+||.+
T Consensus 13 ia~r~~ra~r~~Gi~-----tv~v~s~~d~~s~~~~~a---d~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~pGy 82 (110)
T PF00289_consen 13 IAVRIIRALRELGIE-----TVAVNSNPDTVSTHVDMA---DEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHPGY 82 (110)
T ss_dssp HHHHHHHHHHHTTSE-----EEEEEEGGGTTGHHHHHS---SEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEESTS
T ss_pred HHHHHHHHHHHhCCc-----ceeccCchhccccccccc---ccceecCcchhhhhhccHHHHhhHhhhhcC--ccccccc
Confidence 456778889999885 677777443333333322 223333311110011234555566655554 6788886
Q ss_pred CcccccchHHHHHHHHcCCeE
Q 005894 503 ESFTTNATNILRDLHSANISV 523 (671)
Q Consensus 503 ~~~~~~~~~~V~~~~~~Gl~V 523 (671)
+|+....++.+++.++|+.+
T Consensus 83 -g~lse~~~fa~~~~~~gi~f 102 (110)
T PF00289_consen 83 -GFLSENAEFAEACEDAGIIF 102 (110)
T ss_dssp -STTTTHHHHHHHHHHTT-EE
T ss_pred -chhHHHHHHHHHHHHCCCEE
Confidence 56777889999999999864
No 182
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.09 E-value=32 Score=38.09 Aligned_cols=18 Identities=33% Similarity=0.419 Sum_probs=16.7
Q ss_pred cHHHHHHHHcCCeEEEee
Q 005894 205 TTLVTDAHNAGLQVYASG 222 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wt 222 (671)
..+|..||+.||+|++|-
T Consensus 118 a~~I~~AHkr~l~v~aWf 135 (418)
T COG1649 118 AFVIAEAHKRGLEVHAWF 135 (418)
T ss_pred HHHHHHHHhcCCeeeech
Confidence 589999999999999994
No 183
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=29.98 E-value=3.8e+02 Score=31.41 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC---hhhHHHHHH
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF---PATASKYFR 572 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~---P~~~~~~~~ 572 (671)
.++..+|..|++|.+-.|.+++ +...+ +++|||++.--+ |....++..
T Consensus 600 ~i~~~a~~l~~~viaegVEt~~-------------~~~~l-~~~g~d~~QGy~~~~P~~~~~~~~ 650 (660)
T PRK11829 600 IISCVSDVLKVRVMAEGVETEE-------------QRQWL-LEHGIQCGQGFLFSPPLPRAEFEA 650 (660)
T ss_pred HHHHHHHHcCCeEEEecCCCHH-------------HHHHH-HHcCCCEEecCcccCCCCHHHHHH
Confidence 4556688899999999999996 66655 799999887643 555554443
No 184
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=29.81 E-value=3.7e+02 Score=28.77 Aligned_cols=135 Identities=26% Similarity=0.370 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHH----HhcC----CCc--eEEEEeecccCCCChhHHHHHH-HHHHH
Q 005894 422 GVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSK----FQDV----PAY--KKVLHIRKEVSAAPREVVEEIK-KYASA 490 (671)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~----lk~~----p~~--~~~~l~~~~~~d~~~~~l~~i~-~~a~~ 490 (671)
.-+.++-+.|.+.|+. .|-|.|++...... ||.. |.+ +..|-++..- ..+.+.++. +..+
T Consensus 170 GrV~aIR~aLd~~g~~-----~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n---~~eAlre~~~D~~E- 240 (323)
T PRK09283 170 GRVGAIREALDEAGFT-----DVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPAN---RREALREVALDIEE- 240 (323)
T ss_pred cHHHHHHHHHHHCCCC-----CCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCC---HHHHHHHHHhhHHh-
Confidence 4678899999999997 57888876655443 3333 321 2222221110 112232222 2222
Q ss_pred hcCCceeeecCCCcccccchHHHHHHHH-cCCeEEEEeccCccccccc---ccCCChHH---HHHHHHhhcCccEEEECC
Q 005894 491 VTVTRTSVISTTESFTTNATNILRDLHS-ANISVYISALRNEYLSIAF---DYLADPLI---EVATFAQGVGVDGITTEF 563 (671)
Q Consensus 491 v~~~~~~v~~~~~~~~~~~~~~V~~~~~-~Gl~V~vwtvn~~~~~~~~---d~~~D~~~---e~~~~l~~~GVDgIiTD~ 563 (671)
|.+.-+|-|.. .| -.+++++++ .++++.+|-|.-|..+.-. .-|-|... |....++..|.|.|||=+
T Consensus 241 -GAD~lMVKPal-~Y----LDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D~~~~~~Esl~~~kRAGAd~IiTYf 314 (323)
T PRK09283 241 -GADMVMVKPAL-PY----LDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEERVVLESLLSIKRAGADGILTYF 314 (323)
T ss_pred -CCCEEEEcCCc-hH----HHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 23334555542 12 368888877 5899999999988643332 22456542 333334689999999999
Q ss_pred hhhHHHHH
Q 005894 564 PATASKYF 571 (671)
Q Consensus 564 P~~~~~~~ 571 (671)
-..+.+++
T Consensus 315 A~~~a~~L 322 (323)
T PRK09283 315 AKDAARWL 322 (323)
T ss_pred HHHHHHhh
Confidence 88888776
No 185
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=29.32 E-value=1.1e+02 Score=32.73 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=30.9
Q ss_pred CCcCC-CcHHHHHHHHc---CCeEEEeeecCCcccCCCCCCChHHHHHHHhhcC
Q 005894 199 RYLEP-ATTLVTDAHNA---GLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNS 248 (671)
Q Consensus 199 ~y~~~-~~~~V~~ah~~---Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g 248 (671)
.|+++ ....|+.|+.. |++|++++.+|... .+++.+.|
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~------------a~~l~~~g 218 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIA------------AKRLEDAG 218 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHH------------HHHHHhcC
Confidence 45544 56899999999 99999999998854 77888877
No 186
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.98 E-value=1.4e+02 Score=27.50 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=26.4
Q ss_pred hHHHHHHHHcCC---eEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 510 TNILRDLHSANI---SVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 510 ~~~V~~~~~~Gl---~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
+.+++.++++|. .|++-+...+. +...+ .++|||++|.=
T Consensus 71 ~~~~~~L~~~g~~~i~vivGG~~~~~-------------~~~~l-~~~Gvd~~~~~ 112 (132)
T TIGR00640 71 PALRKELDKLGRPDILVVVGGVIPPQ-------------DFDEL-KEMGVAEIFGP 112 (132)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCChH-------------hHHHH-HHCCCCEEECC
Confidence 467888888764 55665433332 56666 69999999973
No 187
>PLN02623 pyruvate kinase
Probab=28.25 E-value=3.4e+02 Score=31.61 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=46.6
Q ss_pred cchHHHHHHHHcCCeEEEEe------ccCcccccccccCCChH----HHHHHHHhhcCccEEEE-------CChhhHHHH
Q 005894 508 NATNILRDLHSANISVYISA------LRNEYLSIAFDYLADPL----IEVATFAQGVGVDGITT-------EFPATASKY 570 (671)
Q Consensus 508 ~~~~~V~~~~~~Gl~V~vwt------vn~~~~~~~~d~~~D~~----~e~~~~l~~~GVDgIiT-------D~P~~~~~~ 570 (671)
....+++.++++|++|.+-| +.+. .|+ .++..++ ..|+|+|+- .||..+.+.
T Consensus 364 ~qk~Ii~~~~~~gKpvivaTQMLESMi~~~----------~PTRAEv~Dva~av-~dG~d~vmLs~Eta~G~yPveaV~~ 432 (581)
T PLN02623 364 LQEEIIRRCRSMGKPVIVATNMLESMIVHP----------TPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPLKAVKV 432 (581)
T ss_pred HHHHHHHHHHHhCCCEEEECchhhhcccCC----------CCCchhHHHHHHHH-HcCCCEEEecchhhcCcCHHHHHHH
Confidence 34678999999999999887 3333 232 3667774 899999975 599999999
Q ss_pred HHhcCCCCCC
Q 005894 571 FRSKCSDDVE 580 (671)
Q Consensus 571 ~~~~~~~~~~ 580 (671)
+++.|...+.
T Consensus 433 m~~I~~~aE~ 442 (581)
T PLN02623 433 MHTVALRTEA 442 (581)
T ss_pred HHHHHHHHHh
Confidence 9888875544
No 188
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=27.97 E-value=6.8e+02 Score=26.42 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=30.6
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEE
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGI 559 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgI 559 (671)
.+.+++++++|+.|-+..++.- |..=..+-. |-.+.+..+|||||
T Consensus 171 ~dav~r~rkrgIkvc~HiI~GL----PgE~~~~ml-eTak~v~~~~v~GI 215 (312)
T COG1242 171 VDAVKRLRKRGIKVCTHLINGL----PGETRDEML-ETAKIVAELGVDGI 215 (312)
T ss_pred HHHHHHHHHcCCeEEEEEeeCC----CCCCHHHHH-HHHHHHHhcCCceE
Confidence 3578899999999999998753 332222222 33335568999998
No 189
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=27.71 E-value=7.1e+02 Score=25.85 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=26.5
Q ss_pred CceEEeccCCCCCCC--chhHHHHHHHHHCCCCeEEeceeEc
Q 005894 269 RPLIITHNGASGVYA--GCTDLAYQQAVDDGADIIDCTVQMS 308 (671)
Q Consensus 269 ~p~iIAHRG~s~~~P--ENTl~Af~~Ai~~GaD~IE~DVqlT 308 (671)
++.+|+|== ..|| |.|+...+...+.|||+||+-+=.|
T Consensus 9 ~~~li~yit--aG~P~~~~~~~~~~~l~~~GaD~iEiGiPfS 48 (259)
T PF00290_consen 9 RKALIPYIT--AGYPDLETTLEILKALEEAGADIIEIGIPFS 48 (259)
T ss_dssp BTEEEEEEE--TTSSSHHHHHHHHHHHHHTTBSSEEEE--SS
T ss_pred CCeEEEEEe--CCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 445555532 2245 8999999999999999999986543
No 190
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=27.52 E-value=7.1e+02 Score=26.21 Aligned_cols=148 Identities=21% Similarity=0.284 Sum_probs=76.1
Q ss_pred CHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChH-----------HHHHH
Q 005894 389 TLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSS-----------VLSKF 457 (671)
Q Consensus 389 TLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~-----------~L~~l 457 (671)
++.|+|+.++..+..-.-+++-+ .+.+.+++++-++.+ ..|+++..... .++.+
T Consensus 4 ~~~~ll~~A~~~~yAV~AfN~~n---------~e~~~avi~AAe~~~------sPvIlq~~~~~~~~~~~~~~~~~~~~~ 68 (287)
T PF01116_consen 4 NMKELLKKAKEGGYAVPAFNVYN---------LETARAVIEAAEELN------SPVILQISPSEVKYMGLEYLAAMVKAA 68 (287)
T ss_dssp HHHHHHHHHHHHT-BEEEEE-SS---------HHHHHHHHHHHHHTT------S-EEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCeEEEEeeCC---------HHHHHHHHHHHHHhC------CCEEEEcchhhhhhhhHHHHHHHHHHH
Confidence 57788888876532112334332 246677777777764 36777643211 11222
Q ss_pred hcCCCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCC-cc---cccchHHHHHHHHcCCeEEEEe--cc-C
Q 005894 458 QDVPAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTE-SF---TTNATNILRDLHSANISVYISA--LR-N 530 (671)
Q Consensus 458 k~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~-~~---~~~~~~~V~~~~~~Gl~V~vwt--vn-~ 530 (671)
.+.-.+|+++-.+... .++.+++-.+ .|.. +.++..+. .| ...+.++|+.+|..|+.|=+-. +. .
T Consensus 69 a~~~~vPValHLDH~~------~~e~i~~ai~-~Gft-SVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ 140 (287)
T PF01116_consen 69 AEEASVPVALHLDHGK------DFEDIKRAID-AGFT-SVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGK 140 (287)
T ss_dssp HHHSTSEEEEEEEEE-------SHHHHHHHHH-HTSS-EEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSS
T ss_pred HHHcCCCEEeecccCC------CHHHHHHHHH-hCcc-cccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeecc
Confidence 2235688888776642 2344433222 2332 12222221 11 2346789999999998885441 11 1
Q ss_pred c-cccc---ccccCCChHHHHHHHHhhcCccEEE
Q 005894 531 E-YLSI---AFDYLADPLIEVATFAQGVGVDGIT 560 (671)
Q Consensus 531 ~-~~~~---~~d~~~D~~~e~~~~l~~~GVDgIi 560 (671)
+ .... ...+..||. +..+++.+.|||.+-
T Consensus 141 ed~~~~~~~~~~~~TdP~-~a~~Fv~~TgvD~LA 173 (287)
T PF01116_consen 141 EDGIESEEETESLYTDPE-EAKEFVEETGVDALA 173 (287)
T ss_dssp CTTCSSSTT-TTCSSSHH-HHHHHHHHHTTSEEE
T ss_pred CCCccccccccccccCHH-HHHHHHHHhCCCEEE
Confidence 1 1111 134567887 667777788988753
No 191
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=27.39 E-value=4.1e+02 Score=26.90 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=39.0
Q ss_pred HHHHhcCCceeeecCCCcccccchHHHHHHHHc--CCeEEE-EeccCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 487 YASAVTVTRTSVISTTESFTTNATNILRDLHSA--NISVYI-SALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 487 ~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~--Gl~V~v-wtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
.|+.++. ..++...++ ...+.++++++++. ++++.+ .++++.+ ++++++ +.|+|+|+.-.
T Consensus 143 aae~~g~--~ivyLe~SG-~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e-------------~a~~l~-~aGAD~VVVGs 205 (219)
T cd02812 143 AAEYLGM--PIVYLEYSG-AYGPPEVVRAVKKVLGDTPLIVGGGIRSGE-------------QAKEMA-EAGADTIVVGN 205 (219)
T ss_pred HHHHcCC--eEEEeCCCC-CcCCHHHHHHHHHhcCCCCEEEeCCCCCHH-------------HHHHHH-HcCCCEEEECc
Confidence 3556664 344443222 22567899998875 566554 4677776 788875 88999998743
No 192
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=27.33 E-value=1.3e+02 Score=29.05 Aligned_cols=8 Identities=63% Similarity=1.286 Sum_probs=3.8
Q ss_pred cCCCCCCC
Q 005894 618 VRPPLPPV 625 (671)
Q Consensus 618 ~~~p~p~~ 625 (671)
..||+||.
T Consensus 45 t~p~~pP~ 52 (163)
T PF06679_consen 45 TSPPLPPG 52 (163)
T ss_pred CCCCCCCC
Confidence 44555544
No 193
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.23 E-value=3.6e+02 Score=26.87 Aligned_cols=114 Identities=13% Similarity=0.195 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhc---C-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceee
Q 005894 423 VVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQD---V-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSV 498 (671)
Q Consensus 423 ~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~---~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v 498 (671)
-...+.+.+.+.|+. -+=|.--++..+..+++ . |++.++- .++- +.+..++ |-..|. +.+
T Consensus 17 ~a~~ia~al~~gGi~-----~iEit~~tp~a~~~I~~l~~~~~~~~vGA---GTVl--~~e~a~~----ai~aGA--~Fi 80 (201)
T PRK06015 17 HAVPLARALAAGGLP-----AIEITLRTPAALDAIRAVAAEVEEAIVGA---GTIL--NAKQFED----AAKAGS--RFI 80 (201)
T ss_pred HHHHHHHHHHHCCCC-----EEEEeCCCccHHHHHHHHHHHCCCCEEee---EeCc--CHHHHHH----HHHcCC--CEE
Confidence 345677888888875 44444445555555544 3 5433332 2221 1222222 222333 333
Q ss_pred ecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhH---HHHHHh
Q 005894 499 ISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATA---SKYFRS 573 (671)
Q Consensus 499 ~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~---~~~~~~ 573 (671)
... ..++++++.++++|+.+..-...-. |+...+ ++|.+.|= =||... ..|++.
T Consensus 81 vSP-----~~~~~vi~~a~~~~i~~iPG~~Tpt--------------Ei~~A~-~~Ga~~vK-~FPa~~~GG~~yika 137 (201)
T PRK06015 81 VSP-----GTTQELLAAANDSDVPLLPGAATPS--------------EVMALR-EEGYTVLK-FFPAEQAGGAAFLKA 137 (201)
T ss_pred ECC-----CCCHHHHHHHHHcCCCEeCCCCCHH--------------HHHHHH-HCCCCEEE-ECCchhhCCHHHHHH
Confidence 221 2367999999999999887765443 677774 89998654 356432 355554
No 194
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=26.74 E-value=1.4e+02 Score=31.04 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=40.1
Q ss_pred hHHHHHHHHcCCeEEEEec-cCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHHH
Q 005894 510 TNILRDLHSANISVYISAL-RNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYFR 572 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtv-n~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~~ 572 (671)
.+.++++|+.|+++.+|.. +.....-.+++-.|-.....++-.++|+|-|=|++|.--..+.+
T Consensus 133 ~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~ 196 (265)
T COG1830 133 SQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRR 196 (265)
T ss_pred HHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHH
Confidence 3578899999999999854 33321111123333334455555689999999999965544443
No 195
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=26.42 E-value=4.1e+02 Score=31.02 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=39.3
Q ss_pred HHHHhcC-CceeeecC--CCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 487 YASAVTV-TRTSVIST--TESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 487 ~a~~v~~-~~~~v~~~--~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
+...++. ...+++|. ..+|- .+...++.+.+.|.. .+.|+++-. ....++..+ +++|+|.||||+
T Consensus 92 ~L~~~g~~~~~~~IP~R~~eGYG-l~~~~i~~~~~~~~~-LiItvD~Gi---------~~~e~i~~a-~~~gidvIVtDH 159 (575)
T PRK11070 92 ALRSLGCSNVDYLVPNRFEDGYG-LSPEVVDQAHARGAQ-LIVTVDNGI---------SSHAGVAHA-HALGIPVLVTDH 159 (575)
T ss_pred HHHHcCCCceEEEeCCCCcCCCC-CCHHHHHHHHhcCCC-EEEEEcCCc---------CCHHHHHHH-HHCCCCEEEECC
Confidence 3444454 23344453 23342 356788888887765 566777654 112245544 789999999997
No 196
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=26.34 E-value=3.8e+02 Score=28.53 Aligned_cols=134 Identities=26% Similarity=0.364 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHH----hcC----CCc--eEEEEeecccCCCChhHHHHHH-HHHHH
Q 005894 422 GVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKF----QDV----PAY--KKVLHIRKEVSAAPREVVEEIK-KYASA 490 (671)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~l----k~~----p~~--~~~~l~~~~~~d~~~~~l~~i~-~~a~~ 490 (671)
.-+.++-+.|.+.|+. .|-|.|+.......| |.. |.. +..|-++..- ..+.+.++. +..+
T Consensus 162 GrV~aIR~aLd~~g~~-----~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan---~~eAlre~~~D~~E- 232 (314)
T cd00384 162 GRVAAIREALDEAGFS-----DVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPAN---RREALREVELDIEE- 232 (314)
T ss_pred cHHHHHHHHHHHCCCC-----CCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCC---HHHHHHHHHhhHHh-
Confidence 5678899999999996 688888766554432 332 321 2222222110 112222221 2222
Q ss_pred hcCCceeeecCCCcccccchHHHHHHHH-cCCeEEEEeccCccccccc---ccCCChHH---HHHHHHhhcCccEEEECC
Q 005894 491 VTVTRTSVISTTESFTTNATNILRDLHS-ANISVYISALRNEYLSIAF---DYLADPLI---EVATFAQGVGVDGITTEF 563 (671)
Q Consensus 491 v~~~~~~v~~~~~~~~~~~~~~V~~~~~-~Gl~V~vwtvn~~~~~~~~---d~~~D~~~---e~~~~l~~~GVDgIiTD~ 563 (671)
|.+.-+|-|.. .| -.+++++++ .++++.+|-|.-|.-+.-. .-|-|... |....++..|.|+|||=+
T Consensus 233 -GAD~lMVKPal-~Y----LDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~id~~~~~~Esl~~~kRAGAd~IiTYf 306 (314)
T cd00384 233 -GADILMVKPAL-AY----LDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYF 306 (314)
T ss_pred -CCCEEEEcCCc-hH----HHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEEeec
Confidence 33334555542 12 368888877 6999999999888633322 22445432 333344689999999999
Q ss_pred hhhHHHH
Q 005894 564 PATASKY 570 (671)
Q Consensus 564 P~~~~~~ 570 (671)
-..+.++
T Consensus 307 A~~~a~~ 313 (314)
T cd00384 307 AKDAARW 313 (314)
T ss_pred HHHHHhh
Confidence 8877765
No 197
>TIGR03586 PseI pseudaminic acid synthase.
Probab=26.29 E-value=8.4e+02 Score=26.24 Aligned_cols=16 Identities=44% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHHCCCCeEEe
Q 005894 288 LAYQQAVDDGADIIDC 303 (671)
Q Consensus 288 ~Af~~Ai~~GaD~IE~ 303 (671)
.+=..|+.+||++||.
T Consensus 206 ~~~~aAva~GA~iIEk 221 (327)
T TIGR03586 206 LAPVAAVALGACVIEK 221 (327)
T ss_pred HHHHHHHHcCCCEEEe
Confidence 5557888999999993
No 198
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=26.08 E-value=70 Score=33.19 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECCh
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P 564 (671)
++++.+|+.|+-...|.++.+ +.+++. +.|+|.|+..--
T Consensus 141 emi~~A~~~gl~T~~yvf~~e--------------~A~~M~-~AGaDiiv~H~G 179 (268)
T PF09370_consen 141 EMIRKAHEKGLFTTAYVFNEE--------------QARAMA-EAGADIIVAHMG 179 (268)
T ss_dssp HHHHHHHHTT-EE--EE-SHH--------------HHHHHH-HHT-SEEEEE-S
T ss_pred HHHHHHHHCCCeeeeeecCHH--------------HHHHHH-HcCCCEEEecCC
Confidence 689999999999999999766 677774 999999987653
No 199
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.86 E-value=2.2e+02 Score=30.04 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=63.1
Q ss_pred HHHhhceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeE-EEe-eecCCcc---cCCCCCCChHHHHHHHhh-cCce
Q 005894 177 IKSFASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQV-YAS-GFANDIY---SSYSYNFEPEAEYLTFID-NSQF 250 (671)
Q Consensus 177 i~~~a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V-~~w-tv~~~~~---~~~~~~~d~~~e~~~~i~-~g~~ 250 (671)
++.-.+.++++-+.+ |.. ..+....+.|+.||..|+.| .=+ .+..... ..-.+-+||.. ..+|+. .|
T Consensus 94 i~~GftSVM~DgS~l-~~e---eNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~-a~~Fv~~Tg-- 166 (283)
T PRK07998 94 VRAGFTSVMIDGAAL-PFE---ENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEK-VKDFVERTG-- 166 (283)
T ss_pred HHcCCCEEEEeCCCC-CHH---HHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHH-HHHHHHHhC--
Confidence 344456666655543 321 12233468999999999876 222 2211111 11233468854 466665 57
Q ss_pred eeeeEeecC---------CCcccc-------ccCCceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEec
Q 005894 251 AVDGFITDF---------PTTATE-------AIDRPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCT 304 (671)
Q Consensus 251 ~Vdgv~td~---------p~~~~~-------~i~~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~D 304 (671)
||-+..-+ |....+ .++-|+++ |.| ||. | ..-+++|++.|+--|-++
T Consensus 167 -vD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVl-HGg-SG~-~---~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 167 -CDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVI-HGG-SGI-P---PEILRSFVNYKVAKVNIA 229 (283)
T ss_pred -cCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEE-eCC-CCC-C---HHHHHHHHHcCCcEEEEC
Confidence 88665544 544322 23467655 766 553 2 245799999998665543
No 200
>cd08588 PI-PLCc_At5g67130_like Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. This subfamily corresponds to the catalytic domain present in Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. Members in this family show high sequence similarity to bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participates in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG).
Probab=25.84 E-value=71 Score=33.35 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=37.1
Q ss_pred ceEEeccCCCC-----CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCC
Q 005894 270 PLIITHNGASG-----VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESP 319 (671)
Q Consensus 270 p~iIAHRG~s~-----~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~ 319 (671)
..+-+|..+.. ....|--.++...+++|+.++|+||+.. ++.+.++|..
T Consensus 16 t~~gtHNS~~~~~~~~~~~~nQ~~si~~QL~~GiR~l~ld~~~~-~~~~~lcH~~ 69 (270)
T cd08588 16 TFLTTHNSFANSEDAFFLAPNQEDDITKQLDDGVRGLMLDIHDA-NGGLRLCHSV 69 (270)
T ss_pred eeEEeccCccccCCCcccccccCCCHHHHHHhCcceEeeeEEec-CCCEEEECCC
Confidence 35667876532 2446666789999999999999999996 6778888853
No 201
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=25.74 E-value=3.5e+02 Score=27.96 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=52.0
Q ss_pred cHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHH-HHHHhhcCceeeeeEeecCCCccc---ccc---CCceEEeccC
Q 005894 205 TTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAE-YLTFIDNSQFAVDGFITDFPTTAT---EAI---DRPLIITHNG 277 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e-~~~~i~~g~~~Vdgv~td~p~~~~---~~i---~~p~iIAHRG 277 (671)
..+++.+|+.|+.+.++...+-....-.++.+-..+ .+...+.| +|-|-|.|+.... ..+ ..| |++=-|
T Consensus 129 ~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~G---AD~vKt~~~~~~~~l~~~~~~~~ip-V~a~GG 204 (267)
T PRK07226 129 GEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELG---ADIVKTNYTGDPESFREVVEGCPVP-VVIAGG 204 (267)
T ss_pred HHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHC---CCEEeeCCCCCHHHHHHHHHhCCCC-EEEEeC
Confidence 467888999999999986433211111122122222 35556678 9999999874211 112 234 344444
Q ss_pred CCCCCCchhHHHHHHHHHCCCCeE
Q 005894 278 ASGVYAGCTDLAYQQAVDDGADII 301 (671)
Q Consensus 278 ~s~~~PENTl~Af~~Ai~~GaD~I 301 (671)
-+..-.|-.+.-+..+++.||+++
T Consensus 205 i~~~~~~~~l~~v~~~~~aGA~Gi 228 (267)
T PRK07226 205 PKTDTDREFLEMVRDAMEAGAAGV 228 (267)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEE
Confidence 442222334555567789999865
No 202
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.50 E-value=8e+02 Score=28.79 Aligned_cols=114 Identities=14% Similarity=0.191 Sum_probs=59.6
Q ss_pred ChHHHHHHhcC-CCceEEEEeecc--c--CCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeE-
Q 005894 450 DSSVLSKFQDV-PAYKKVLHIRKE--V--SAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISV- 523 (671)
Q Consensus 450 d~~~L~~lk~~-p~~~~~~l~~~~--~--~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V- 523 (671)
.++.|+.+++. |+.++..++... + ...++..++...+.|..-++..-.++..... ...-...++.++++|+.+
T Consensus 63 p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd-~~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 63 PWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMND-PRNLETALKAVRKVGAHAQ 141 (593)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc-HHHHHHHHHHHHHcCCeEE
Confidence 46788888888 888876655421 1 1122233333333344444443334432111 122335788999999974
Q ss_pred --EEEeccCcccccccccCCChHHHHHHHHhhcCccEEEE-C-----ChhhHHHHH
Q 005894 524 --YISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITT-E-----FPATASKYF 571 (671)
Q Consensus 524 --~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiT-D-----~P~~~~~~~ 571 (671)
..+|..... ..+| ..++.+.+.++|+|.|.- | .|..+.++.
T Consensus 142 ~~i~yt~~p~~---~~~~----~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv 190 (593)
T PRK14040 142 GTLSYTTSPVH---TLQT----WVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELV 190 (593)
T ss_pred EEEEEeeCCcc---CHHH----HHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHH
Confidence 456654422 1222 224444446899998743 4 355554443
No 203
>PRK15452 putative protease; Provisional
Probab=25.46 E-value=1.4e+02 Score=33.62 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHHH
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYFR 572 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~~ 572 (671)
+.++.+|++|.+||+- +|.-. .+-.-+...++...+.++||||||.-.|..+.-+++
T Consensus 50 eav~~ah~~g~kvyvt-~n~i~----~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke 106 (443)
T PRK15452 50 LGINEAHALGKKFYVV-VNIAP----HNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVRE 106 (443)
T ss_pred HHHHHHHHcCCEEEEE-ecCcC----CHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHH
Confidence 5688899999999884 33221 000000001112222479999999999998876554
No 204
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.40 E-value=7e+02 Score=25.80 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=81.8
Q ss_pred ccCHHHHHHHHhccCcccE-EEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcC-CCce
Q 005894 387 FVTLDGFLEFAKTKAVSGV-LININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDV-PAYK 464 (671)
Q Consensus 387 ipTLeEvL~~~~~~~~~~i-~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~-p~~~ 464 (671)
-|++++.++.+.....-|+ +|||=-+-...-..|.-+.++-.++|++ |... ++ -.+.++++++. ++.+
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~-G~~~---~~------~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAA-GVTL---AD------VFELVREIREKDPTIP 91 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHc-CCCH---HH------HHHHHHHHHhcCCCCC
Confidence 5777777775553211133 6788754221112344455555555533 3331 11 14566677744 7778
Q ss_pred EEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChH
Q 005894 465 KVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPL 544 (671)
Q Consensus 465 ~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~ 544 (671)
++++..... +-.-+++++.+.|...|+.. .+.|.- . .....++++.++++|+........+.. .
T Consensus 92 ~vlm~Y~N~--i~~~G~e~f~~~~~~aGvdG-viipDL-p-~ee~~~~~~~~~~~gl~~I~lvap~t~-----------~ 155 (258)
T PRK13111 92 IVLMTYYNP--IFQYGVERFAADAAEAGVDG-LIIPDL-P-PEEAEELRAAAKKHGLDLIFLVAPTTT-----------D 155 (258)
T ss_pred EEEEecccH--HhhcCHHHHHHHHHHcCCcE-EEECCC-C-HHHHHHHHHHHHHcCCcEEEEeCCCCC-----------H
Confidence 765543221 11224555555566666643 334432 1 123346888899999886653333321 1
Q ss_pred HHHHHHH----------hhcCccEEEECChhhHHHHHHh
Q 005894 545 IEVATFA----------QGVGVDGITTEFPATASKYFRS 573 (671)
Q Consensus 545 ~e~~~~l----------~~~GVDgIiTD~P~~~~~~~~~ 573 (671)
.+++... ...|+.|.-|..|..+.++++.
T Consensus 156 eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~ 194 (258)
T PRK13111 156 ERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVAR 194 (258)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHH
Confidence 1333322 1256777777777776665544
No 205
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=25.37 E-value=8.5e+02 Score=25.99 Aligned_cols=148 Identities=21% Similarity=0.252 Sum_probs=74.5
Q ss_pred ccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChH-----------HHH
Q 005894 387 FVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSS-----------VLS 455 (671)
Q Consensus 387 ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~-----------~L~ 455 (671)
+.++.|+|..+++.+..---+++-+ .+.+.+++++-++.+ ..|++|..... .++
T Consensus 2 lv~~k~lL~~A~~~~yaV~AfN~~n---------~e~~~avi~AAe~~~------sPvIlq~s~~~~~~~g~~~~~~~~~ 66 (307)
T PRK05835 2 LVKGNEILLKAHKEGYGVGAFNFVN---------FEMLNAIFEAGNEEN------SPLFIQASEGAIKYMGIDMAVGMVK 66 (307)
T ss_pred CCCHHHHHHHHHHCCceEEEEEECC---------HHHHHHHHHHHHHHC------CCEEEEcCccHHhhCChHHHHHHHH
Confidence 3468888888877632112233322 356677777776654 36777643211 122
Q ss_pred HHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceee-ecCCC-cc---cccchHHHHHHHHcCCeEEEE--e
Q 005894 456 KFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSV-ISTTE-SF---TTNATNILRDLHSANISVYIS--A 527 (671)
Q Consensus 456 ~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v-~~~~~-~~---~~~~~~~V~~~~~~Gl~V~vw--t 527 (671)
.+.+. +.+|+++-.+... .++.+++-. ..|. +++ +..+. .| +..+.++|+.+|.+|+.|=+- .
T Consensus 67 ~~a~~~~~VPValHLDHg~------~~e~i~~ai-~~Gf--tSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~ 137 (307)
T PRK05835 67 IMCERYPHIPVALHLDHGT------TFESCEKAV-KAGF--TSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGR 137 (307)
T ss_pred HHHHhcCCCeEEEECCCCC------CHHHHHHHH-HcCC--CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 23333 4578888776542 244444322 2232 333 22221 11 334678999999999887433 1
Q ss_pred c-cCccc---ccccccCCChHHHHHHHHhhcCccEE
Q 005894 528 L-RNEYL---SIAFDYLADPLIEVATFAQGVGVDGI 559 (671)
Q Consensus 528 v-n~~~~---~~~~d~~~D~~~e~~~~l~~~GVDgI 559 (671)
+ ..++- .....++.||+ +..+++.+.|||.+
T Consensus 138 vgg~ed~~~~~~~~~~~TdPe-eA~~Fv~~TgvD~L 172 (307)
T PRK05835 138 LMGIEDNISVDEKDAVLVNPK-EAEQFVKESQVDYL 172 (307)
T ss_pred cCCccCCcccccccccCCCHH-HHHHHHHhhCCCEE
Confidence 1 11110 00112244555 45556555666643
No 206
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=25.20 E-value=95 Score=33.36 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=28.8
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
..+++++|++|+.|+. ++.+.. +.+++ .+.|+|+|+.-
T Consensus 126 ~~~i~~l~~~gi~v~~-~v~s~~-------------~A~~a-~~~G~D~iv~q 163 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIP-QVTSVR-------------EARKA-AKAGADAIVAQ 163 (330)
T ss_dssp HHHHHHHHHTT-EEEE-EESSHH-------------HHHHH-HHTT-SEEEEE
T ss_pred HHHHHHHHHcCCcccc-ccCCHH-------------HHHHh-hhcCCCEEEEe
Confidence 6899999999998886 556554 67776 59999999964
No 207
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.03 E-value=1.9e+02 Score=31.44 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=34.8
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHHHHH
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATASKYF 571 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~~~~ 571 (671)
.+.|+.+|++|.++++=. |.--. ... .......+..+ .++|||+||-.+|..+.-..
T Consensus 52 ~e~i~~ah~~gkk~~V~~-N~~~~--~~~-~~~~~~~l~~l-~e~GvDaviv~Dpg~i~l~~ 108 (347)
T COG0826 52 AEAVELAHSAGKKVYVAV-NTLLH--NDE-LETLERYLDRL-VELGVDAVIVADPGLIMLAR 108 (347)
T ss_pred HHHHHHHHHcCCeEEEEe-ccccc--cch-hhHHHHHHHHH-HHcCCCEEEEcCHHHHHHHH
Confidence 468899999999877642 22110 000 00011234444 58999999999999776443
No 208
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.02 E-value=8.3e+02 Score=25.73 Aligned_cols=150 Identities=20% Similarity=0.197 Sum_probs=77.3
Q ss_pred ccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCCh-------HHHH-HHh
Q 005894 387 FVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDS-------SVLS-KFQ 458 (671)
Q Consensus 387 ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~-------~~L~-~lk 458 (671)
+.++.|+|+.+++.+..-.-+++-+ .....+++++-++.+ ..|+++.... ..+. .++
T Consensus 3 lv~~k~ll~~A~~~~yaV~AfN~~n---------~e~~~avi~AAe~~~------sPvIl~~~~~~~~~~g~~~~~~~~~ 67 (283)
T PRK07998 3 LVNGRILLDRIQEKHVLAGAFNTTN---------LETTISILNAIERSG------LPNFIQIAPTNAQLSGYDYIYEIVK 67 (283)
T ss_pred CCcHHHHHHHHHHCCCEEEEEeeCC---------HHHHHHHHHHHHHhC------CCEEEECcHhHHhhCCHHHHHHHHH
Confidence 5678999998887632112344432 245677777777654 3677765221 1111 122
Q ss_pred ---cCCCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeee-cCC-Ccc---cccchHHHHHHHHcCCeEEE--Eec
Q 005894 459 ---DVPAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVI-STT-ESF---TTNATNILRDLHSANISVYI--SAL 528 (671)
Q Consensus 459 ---~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~-~~~-~~~---~~~~~~~V~~~~~~Gl~V~v--wtv 528 (671)
+..++|+++-.+... .++.+.+ |-..|. .++. ..+ ..| +..+.++++.+|..|+.|=+ -.+
T Consensus 68 ~~A~~~~vPV~lHLDH~~------~~e~i~~-Ai~~Gf--tSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 68 RHADKMDVPVSLHLDHGK------TFEDVKQ-AVRAGF--TSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred HHHHHCCCCEEEECcCCC------CHHHHHH-HHHcCC--CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 225677777766542 2333332 212233 3332 111 111 23467899999999998711 122
Q ss_pred -cCcccc-cccccCCChHHHHHHHHhhcCccEEEE
Q 005894 529 -RNEYLS-IAFDYLADPLIEVATFAQGVGVDGITT 561 (671)
Q Consensus 529 -n~~~~~-~~~d~~~D~~~e~~~~l~~~GVDgIiT 561 (671)
..++.. ..-.+..||+ +..+++.+.|||.+-.
T Consensus 139 gg~ed~~~~~~~~~T~pe-~a~~Fv~~TgvD~LAv 172 (283)
T PRK07998 139 LGKEDDHVSEADCKTEPE-KVKDFVERTGCDMLAV 172 (283)
T ss_pred CCccccccccccccCCHH-HHHHHHHHhCcCeeeh
Confidence 222100 0013355776 5677777788885543
No 209
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.92 E-value=3.3e+02 Score=23.74 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCC-ChHHHHHHHHhhcCccEEEECChhhHHHH
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLA-DPLIEVATFAQGVGVDGITTEFPATASKY 570 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~-D~~~e~~~~l~~~GVDgIiTD~P~~~~~~ 570 (671)
++...++.+|+.|..-.+.+....-|.-|.+ .-..++..++...++|.|+.|.+-+-.+.
T Consensus 12 El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~ 72 (95)
T PF13167_consen 12 ELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQ 72 (95)
T ss_pred HHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHH
Confidence 4555666677776655444332222333333 33447888877899999999986555543
No 210
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=24.90 E-value=99 Score=30.52 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=31.1
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
+.+++.+++.|+.|.+..|+++. +...+ .++|||.+.=++
T Consensus 193 ~~l~~~~~~~~~~via~gVe~~~-------------~~~~l-~~~G~~~~QG~~ 232 (236)
T PF00563_consen 193 QSLINLAKSLGIKVIAEGVESEE-------------QLELL-KELGVDYIQGYL 232 (236)
T ss_dssp HHHHHHHHHTT-EEEEECE-SHH-------------HHHHH-HHTTESEEESTT
T ss_pred HHHHHHhhccccccceeecCCHH-------------HHHHH-HHcCCCEEEeCC
Confidence 35788899999999999999997 66665 799999887543
No 211
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=24.53 E-value=4.6e+02 Score=26.58 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=32.0
Q ss_pred cchHHHHHHHHc--CCeE-EEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 508 NATNILRDLHSA--NISV-YISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 508 ~~~~~V~~~~~~--Gl~V-~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
...++++++++. ++++ +..++++.+ ++++++ ++|+|+|++-.
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e-------------~a~~l~-~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVE-------------KAREMA-EAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHH-------------HHHHHH-HcCCCEEEECc
Confidence 346789998874 5776 556788887 788885 88999998743
No 212
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=24.03 E-value=53 Score=32.22 Aligned_cols=46 Identities=24% Similarity=0.112 Sum_probs=34.8
Q ss_pred cCCCCCCCchhHHHH-HHHHHCCCCeEEeceeEccCCeEEEecCCCc
Q 005894 276 NGASGVYAGCTDLAY-QQAVDDGADIIDCTVQMSKEGVAFCLESPDL 321 (671)
Q Consensus 276 RG~s~~~PENTl~Af-~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~L 321 (671)
.|.-|.+.=|-++.- +-|...||--+|.-|+|-||.+.|-.||..+
T Consensus 255 kgsdgharfnelatkaqiaqsfgavnletrvwmpkdevavynhdeyv 301 (347)
T PF06673_consen 255 KGSDGHARFNELATKAQIAQSFGAVNLETRVWMPKDEVAVYNHDEYV 301 (347)
T ss_pred cCCcchhHHHHHHHHHHHHHhcCccceeeeeeccccceeeecccceE
Confidence 355555555555443 3455789999999999999999999999865
No 213
>PF15050 SCIMP: SCIMP protein
Probab=23.78 E-value=85 Score=28.36 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=6.9
Q ss_pred cCcccCCCCCCC
Q 005894 614 VADIVRPPLPPV 625 (671)
Q Consensus 614 ~~~~~~~p~p~~ 625 (671)
.+-+..|||||-
T Consensus 64 ~~~~~LPpLPPR 75 (133)
T PF15050_consen 64 QSPVQLPPLPPR 75 (133)
T ss_pred CCcCCCCCCCCC
Confidence 344556777763
No 214
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.74 E-value=2.3e+02 Score=25.39 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=29.7
Q ss_pred hHHHHHHHHcCC-eEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEE--CChhhHHHHHH
Q 005894 510 TNILRDLHSANI-SVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITT--EFPATASKYFR 572 (671)
Q Consensus 510 ~~~V~~~~~~Gl-~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiT--D~P~~~~~~~~ 572 (671)
+++++.+++.|. .+.+|.-.... ..++.++ .++|+|++|- -.++....+++
T Consensus 68 ~~~~~~L~~~~~~~i~i~~GG~~~-----------~~~~~~~-~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 68 PEVIELLRELGAGDILVVGGGIIP-----------PEDYELL-KEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCC-----------HHHHHHH-HHCCCCEEECCCCCHHHHHHHHh
Confidence 467777888865 33344332211 1257777 5999999985 34455555543
No 215
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.70 E-value=8.2e+02 Score=25.20 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=27.2
Q ss_pred CceEEeccCCCCCCCchhHHHHHHHHHCCCCeEEeceeEc
Q 005894 269 RPLIITHNGASGVYAGCTDLAYQQAVDDGADIIDCTVQMS 308 (671)
Q Consensus 269 ~p~iIAHRG~s~~~PENTl~Af~~Ai~~GaD~IE~DVqlT 308 (671)
++..|+|==+.---+|-|....+...+.|||+||+-|=.|
T Consensus 9 ~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfs 48 (256)
T TIGR00262 9 EGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFS 48 (256)
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4455555322222357788888888899999999987554
No 216
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=23.67 E-value=6.2e+02 Score=30.22 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.4
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECC
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEF 563 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~ 563 (671)
..++..+|+.|+.|.+-.|.+++ ++..+ .++|||.+.=.+
T Consensus 738 ~~~~~~~~~~~i~via~gVe~~~-------------~~~~l-~~~g~~~~QG~~ 777 (799)
T PRK11359 738 EAITSIGQSLNLTVVAEGVETKE-------------QFEML-RKIHCRVIQGYF 777 (799)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHH-------------HHHHH-HhcCCCEEeeCe
Confidence 35777889999999999999997 66655 799999776544
No 217
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=23.49 E-value=4e+02 Score=25.88 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=30.0
Q ss_pred chHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 509 ATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 509 ~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
++++++.++..|..+.+- +.+.. |+.+.+ +.|+|.|-.+
T Consensus 86 ~~~~~~~~~~~~~~~i~g-v~t~~-------------e~~~A~-~~Gad~i~~~ 124 (190)
T cd00452 86 DPEVVKAANRAGIPLLPG-VATPT-------------EIMQAL-ELGADIVKLF 124 (190)
T ss_pred CHHHHHHHHHcCCcEECC-cCCHH-------------HHHHHH-HCCCCEEEEc
Confidence 468999999999887763 44544 777774 8999999874
No 218
>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32; InterPro: IPR019346 This entry represents a family of short proteins; each approximately 100 amino acid residues in length. They are identified as the mitochondrial 28S ribosomal proteins S32.
Probab=23.41 E-value=55 Score=28.54 Aligned_cols=17 Identities=12% Similarity=0.505 Sum_probs=13.9
Q ss_pred eceeEccCC-eEEEecCC
Q 005894 303 CTVQMSKEG-VAFCLESP 319 (671)
Q Consensus 303 ~DVqlTkDG-v~Vv~HD~ 319 (671)
..|-+|+|| .+||+|-.
T Consensus 4 ~~iavT~dG~tIVcwHP~ 21 (96)
T PF10210_consen 4 VEIAVTSDGRTIVCWHPE 21 (96)
T ss_pred eeEEEecCCCEEEEeCCC
Confidence 357899999 99999954
No 219
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=23.24 E-value=5.2e+02 Score=28.10 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=60.0
Q ss_pred ccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCCh-------H----HHH
Q 005894 387 FVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDS-------S----VLS 455 (671)
Q Consensus 387 ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~-------~----~L~ 455 (671)
+.++.++|..+++.+..---+++-+ .+.+.+++++-++.+ ..|++|.... . .++
T Consensus 3 lv~~k~lL~~A~~~~yaV~AfN~~n---------~e~~~avi~AAEe~~------sPvIlq~s~~~~~~~g~~~~~~~v~ 67 (347)
T PRK13399 3 LITLRQLLDHAAENGYGVPAFNVNN---------MEQILAIMEAAEATD------SPVILQASRGARKYAGDAMLRHMVL 67 (347)
T ss_pred CccHHHHHHHHHHCCceEEEEEeCC---------HHHHHHHHHHHHHhC------CCEEEECCcchhhhCCHHHHHHHHH
Confidence 4578888888876532112233322 245667777766654 3666665321 1 122
Q ss_pred HHhcC-CCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceeee-cCCCc--------c---cccchHHHHHHHHcCCe
Q 005894 456 KFQDV-PAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVI-STTES--------F---TTNATNILRDLHSANIS 522 (671)
Q Consensus 456 ~lk~~-p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~-~~~~~--------~---~~~~~~~V~~~~~~Gl~ 522 (671)
.+.+. +.+|+++-.+... .++.+++-. ..| ++++. ..+.. | +..+.++|+.+|..|+.
T Consensus 68 ~~ae~~~~VPVaLHLDHg~------~~e~i~~Ai-~~G--FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~Gvs 138 (347)
T PRK13399 68 AAAEMYPDIPICLHQDHGN------SPATCQSAI-RSG--FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVS 138 (347)
T ss_pred HHHHhcCCCcEEEECCCCC------CHHHHHHHH-hcC--CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCe
Confidence 33333 4577777766542 233332221 122 23322 11100 1 23467899999999998
Q ss_pred EEEE
Q 005894 523 VYIS 526 (671)
Q Consensus 523 V~vw 526 (671)
|=+-
T Consensus 139 VEaE 142 (347)
T PRK13399 139 VEGE 142 (347)
T ss_pred EEEE
Confidence 7544
No 220
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=23.23 E-value=79 Score=32.95 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCC
Q 005894 284 GCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESP 319 (671)
Q Consensus 284 ENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~ 319 (671)
-|-..++..+++.|+.++|+||+... +.+.++|-.
T Consensus 41 ~nQ~~sI~~QL~~GvR~LdLdv~~~~-~~l~v~Hg~ 75 (267)
T cd08590 41 PNQELSITDQLDLGARFLELDVHWTT-GDLRLCHGG 75 (267)
T ss_pred cccCcCHHHHHhhCCcEEEEeeeeCC-CCEEEEccC
Confidence 45567889999999999999999865 566677754
No 221
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=23.21 E-value=5.9e+02 Score=27.23 Aligned_cols=135 Identities=24% Similarity=0.343 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHH----hcC----CCc--eEEEEeecccCCCChhHHHHHH-HHHHH
Q 005894 422 GVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKF----QDV----PAY--KKVLHIRKEVSAAPREVVEEIK-KYASA 490 (671)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~l----k~~----p~~--~~~~l~~~~~~d~~~~~l~~i~-~~a~~ 490 (671)
.-+.++-+.|.+.|+. .|-|.|+.......| |.. |.. +..|-++.. . ..+.+.++. +..+
T Consensus 167 GrV~aIR~aLd~~g~~-----~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~--n-~~eAlre~~~Di~E- 237 (320)
T cd04823 167 GRIGAIREALDAEGFT-----NVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPA--N-SREALREVALDIAE- 237 (320)
T ss_pred hHHHHHHHHHHHCCCC-----CCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCC--C-HHHHHHHHHhhHHh-
Confidence 4678888999999997 578888766554433 322 221 222222211 0 012222221 1222
Q ss_pred hcCCceeeecCCCcccccchHHHHHHHH-cCCeEEEEeccCccccccc---ccCCChHH---HHHHHHhhcCccEEEECC
Q 005894 491 VTVTRTSVISTTESFTTNATNILRDLHS-ANISVYISALRNEYLSIAF---DYLADPLI---EVATFAQGVGVDGITTEF 563 (671)
Q Consensus 491 v~~~~~~v~~~~~~~~~~~~~~V~~~~~-~Gl~V~vwtvn~~~~~~~~---d~~~D~~~---e~~~~l~~~GVDgIiTD~ 563 (671)
|.+.-+|-|.- .| -.+++.+++ .+++|.+|-|.-|..+.-. .-|-|... |....++..|.|.|||=+
T Consensus 238 -GAD~lMVKPal-~Y----LDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~ikRAGAd~IiTY~ 311 (320)
T cd04823 238 -GADMVMVKPGM-PY----LDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYF 311 (320)
T ss_pred -CCCEEEEcCCc-hH----HHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEeecc
Confidence 33334555542 12 367888866 7899999999888633222 22445432 433344689999999999
Q ss_pred hhhHHHHH
Q 005894 564 PATASKYF 571 (671)
Q Consensus 564 P~~~~~~~ 571 (671)
-..+.+|+
T Consensus 312 A~~~a~wl 319 (320)
T cd04823 312 AKEAAEWL 319 (320)
T ss_pred HHHHHHhh
Confidence 88888876
No 222
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=23.14 E-value=5.2e+02 Score=28.85 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCeEEEEec
Q 005894 511 NILRDLHSANISVYISAL 528 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtv 528 (671)
+.+++++++|+.+..-++
T Consensus 236 ~Al~~L~~aGI~l~nQsV 253 (417)
T TIGR03820 236 KALAKLADAGIPLGNQSV 253 (417)
T ss_pred HHHHHHHHcCCEEEeece
Confidence 466777888888766544
No 223
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=23.06 E-value=9e+02 Score=25.48 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=62.9
Q ss_pred ccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcC-------ChHHH----H
Q 005894 387 FVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSD-------DSSVL----S 455 (671)
Q Consensus 387 ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sf-------d~~~L----~ 455 (671)
+.++.|+|+.+++.+..-.-+++-+ .+.+.+++++-++.+ ..|+++.- ..+.+ +
T Consensus 3 lv~~k~iL~~A~~~~yAV~AfN~~n---------~e~~~avi~AAee~~------sPvIlq~s~~~~~~~~~~~~~~~~~ 67 (286)
T PRK12738 3 IISTKYLLQDAQANGYAVPAFNIHN---------AETIQAILEVCSEMR------SPVILAGTPGTFKHIALEEIYALCS 67 (286)
T ss_pred CCcHHHHHHHHHHCCceEEEEEeCC---------HHHHHHHHHHHHHHC------CCEEEEcCcchhhhCCHHHHHHHHH
Confidence 5678899999887632112344432 356778888877764 36676631 11211 1
Q ss_pred HHhcCCCceEEEEeecccCCCChhHHHHHHHHHHHhcCCceee-ecCCC-cc---cccchHHHHHHHHcCCeEEE
Q 005894 456 KFQDVPAYKKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSV-ISTTE-SF---TTNATNILRDLHSANISVYI 525 (671)
Q Consensus 456 ~lk~~p~~~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v-~~~~~-~~---~~~~~~~V~~~~~~Gl~V~v 525 (671)
.+.+.-.+|+++-.+... .++.+++-. ..|. .++ +..+. .| +..+.++|+.+|..|+.|=+
T Consensus 68 ~~a~~~~VPValHLDHg~------~~e~i~~ai-~~GF--tSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEa 133 (286)
T PRK12738 68 AYSTTYNMPLALHLDHHE------SLDDIRRKV-HAGV--RSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEA 133 (286)
T ss_pred HHHHHCCCCEEEECCCCC------CHHHHHHHH-HcCC--CeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 222224678887776542 244444322 2232 333 22211 11 33567899999999998743
No 224
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.03 E-value=2e+02 Score=27.10 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=29.9
Q ss_pred ccccchHHHHHHHHcCCe---EEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 505 FTTNATNILRDLHSANIS---VYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 505 ~~~~~~~~V~~~~~~Gl~---V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
+...-+.+++.++++|.. |++-.+-... ++.++ +++|+|+|++=
T Consensus 76 h~~l~~~lve~lre~G~~~i~v~~GGvip~~-------------d~~~l-~~~G~~~if~p 122 (143)
T COG2185 76 HLTLVPGLVEALREAGVEDILVVVGGVIPPG-------------DYQEL-KEMGVDRIFGP 122 (143)
T ss_pred HHHHHHHHHHHHHHhCCcceEEeecCccCch-------------hHHHH-HHhCcceeeCC
Confidence 445557899999999975 3333333332 56666 69999999973
No 225
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=22.94 E-value=1.2e+02 Score=32.64 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=28.4
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
+..++++|++|+.|+. ++.+.. +.+++ .+.|+|+||-.
T Consensus 93 P~~~~~lk~~Gi~v~~-~v~s~~-------------~A~~a-~~~GaD~vVaq 130 (320)
T cd04743 93 PDQARALEAIGISTYL-HVPSPG-------------LLKQF-LENGARKFIFE 130 (320)
T ss_pred hHHHHHHHHCCCEEEE-EeCCHH-------------HHHHH-HHcCCCEEEEe
Confidence 3457999999999984 444443 56666 59999999954
No 226
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=22.86 E-value=2.9e+02 Score=27.68 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=61.0
Q ss_pred cHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCccccccCCceEEeccCCCCCCCc
Q 005894 205 TTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATEAIDRPLIITHNGASGVYAG 284 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~~i~~p~iIAHRG~s~~~PE 284 (671)
-.+--.|+++|++|-+|.=++....--.....-..+..+++..+ |-..+ .-.|-.-.+-+
T Consensus 57 ~GLAlAA~rrG~~vev~~~~~~plfld~vr~~~kk~v~~~v~~~----------f~~~a----------~~~gv~~~~~~ 116 (207)
T PF11814_consen 57 FGLALAAARRGFKVEVWVSTDGPLFLDSVRSEEKKEVMELVHED----------FREEA----------EQAGVPVHYRP 116 (207)
T ss_pred HHHHHHHHHcCCceEEEECCCCCceeccCCCHHHHHHHHHHHHH----------HHHHH----------HHCCCceecCC
Confidence 36888899999999999877653211112222223333333321 11111 12344555667
Q ss_pred hhHHHHHHHHHCCCCeEEec--------------eeEccCCeEEEecCCCcccccC
Q 005894 285 CTDLAYQQAVDDGADIIDCT--------------VQMSKEGVAFCLESPDLIGKTT 326 (671)
Q Consensus 285 NTl~Af~~Ai~~GaD~IE~D--------------VqlTkDGv~Vv~HD~~L~rtT~ 326 (671)
-|+...+++++.|+-.|=+= |.--.|+..|..||++++...+
T Consensus 117 ~~~~~l~~~l~~G~~~lvLIS~y~~~g~k~PHWV~v~g~d~~~vyihDP~~d~~~~ 172 (207)
T PF11814_consen 117 LSLADLRAALAAGAIVLVLISTYRMDGKKVPHWVVVTGVDDDFVYIHDPDVDAERG 172 (207)
T ss_pred CCHHHHHHHHHCCCEEEEEEeecccCCCCCCeEEEEEEecCCEEEEeCCCCCcccC
Confidence 88999999999987543221 2234588899999999874433
No 227
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=22.80 E-value=1.3e+02 Score=31.20 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHHHHHHhhcCceeeeeEeecCCCcccc
Q 005894 206 TLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAEYLTFIDNSQFAVDGFITDFPTTATE 265 (671)
Q Consensus 206 ~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e~~~~i~~g~~~Vdgv~td~p~~~~~ 265 (671)
++++.||++|+--.+|.|+.+. .+++.+.| +|.|+....-+...
T Consensus 141 emi~~A~~~gl~T~~yvf~~e~-------------A~~M~~AG---aDiiv~H~GlT~gG 184 (268)
T PF09370_consen 141 EMIRKAHEKGLFTTAYVFNEEQ-------------ARAMAEAG---ADIIVAHMGLTTGG 184 (268)
T ss_dssp HHHHHHHHTT-EE--EE-SHHH-------------HHHHHHHT----SEEEEE-SS----
T ss_pred HHHHHHHHCCCeeeeeecCHHH-------------HHHHHHcC---CCEEEecCCccCCC
Confidence 7999999999999999997543 66888999 99888776555443
No 228
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=22.70 E-value=3.9e+02 Score=27.71 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=77.2
Q ss_pred cCHHHHHHHHhccCcccEEEEecCchhhhh--hcCCcHHHHHHHHHHhcCCCCC--CCceEEEEcCChHHHHHHhcCCCc
Q 005894 388 VTLDGFLEFAKTKAVSGVLININNAAYLAS--KKGLGVVDAVTKALSNATFDKQ--STQQVMIQSDDSSVLSKFQDVPAY 463 (671)
Q Consensus 388 pTLeEvL~~~~~~~~~~i~IeIK~~~~~~~--~~~~~~~~~v~~~l~~~~~~~~--~~~~vii~Sfd~~~L~~lk~~p~~ 463 (671)
..|.++|+...++ ..+..|+|..+.... ....+.+ .+.+..+++|..-. -++.-.|+ -+.+.|+.+++.-..
T Consensus 33 r~f~~AL~~~~~~--~~vIAEvKkaSPS~G~ir~d~dp~-~ia~~Ye~~GAa~iSVLTd~~~F~-Gs~e~L~~v~~~v~~ 108 (254)
T COG0134 33 RDFYAALKEASGK--PAVIAEVKKASPSKGLIREDFDPV-EIAKAYEEGGAAAISVLTDPKYFQ-GSFEDLRAVRAAVDL 108 (254)
T ss_pred ccHHHHHHhcCCC--ceEEEEeecCCCCCCcccccCCHH-HHHHHHHHhCCeEEEEecCccccC-CCHHHHHHHHHhcCC
Confidence 4566777766333 589999998765321 1122333 35666677764410 01222222 256777777766444
Q ss_pred eEEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccc--cchHHHHHHHHcCCeEEEEeccCcccccccccCC
Q 005894 464 KKVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTT--NATNILRDLHSANISVYISALRNEYLSIAFDYLA 541 (671)
Q Consensus 464 ~~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~--~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~ 541 (671)
|+ +....+- .+..+.+. ...|.+.-.+... .+. .-.++++.+|+.|+.+.+-+-|.+
T Consensus 109 Pv--L~KDFii--D~yQI~~A----r~~GADavLLI~~---~L~~~~l~el~~~A~~LGm~~LVEVh~~e---------- 167 (254)
T COG0134 109 PV--LRKDFII--DPYQIYEA----RAAGADAVLLIVA---ALDDEQLEELVDRAHELGMEVLVEVHNEE---------- 167 (254)
T ss_pred Ce--eeccCCC--CHHHHHHH----HHcCcccHHHHHH---hcCHHHHHHHHHHHHHcCCeeEEEECCHH----------
Confidence 42 2222111 12333322 2222221111110 011 125789999999999999987766
Q ss_pred ChHHHHHHHHhhcCccEEEEC
Q 005894 542 DPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 542 D~~~e~~~~l~~~GVDgIiTD 562 (671)
|+.+.+ +.|..-|=-|
T Consensus 168 ----El~rAl-~~ga~iIGIN 183 (254)
T COG0134 168 ----ELERAL-KLGAKIIGIN 183 (254)
T ss_pred ----HHHHHH-hCCCCEEEEe
Confidence 688886 6888777444
No 229
>PF12957 DUF3846: Domain of unknown function (DUF3846); InterPro: IPR024559 A family of uncharacterised proteins found by clustering human gut metagenomic sequences []. In a few cases it is found fused to the C terminus of ArdA (Pfam:PF07275). ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].
Probab=22.52 E-value=1.3e+02 Score=25.83 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.3
Q ss_pred CCCchhHHHHHHHHHCCCCeEEeceeEccCCeEEEecCCC
Q 005894 281 VYAGCTDLAYQQAVDDGADIIDCTVQMSKEGVAFCLESPD 320 (671)
Q Consensus 281 ~~PENTl~Af~~Ai~~GaD~IE~DVqlTkDGv~Vv~HD~~ 320 (671)
...+||+.++|+++ ...||+ |.+ .+++.++++|.-
T Consensus 14 ~~i~~~l~~lq~~V---gG~ie~-v~l-~~~~~l~~neeG 48 (95)
T PF12957_consen 14 IEIDNSLEALQKLV---GGYIEV-VYL-DDGVVLYCNEEG 48 (95)
T ss_pred EecCCCHHHHHHHH---CCeEEE-Eec-CCCEEEEEeCcc
Confidence 35688899999999 447888 777 667777887765
No 230
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=22.25 E-value=3.1e+02 Score=28.26 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=31.4
Q ss_pred hHHHHHHHHc---CCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEE
Q 005894 510 TNILRDLHSA---NISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITT 561 (671)
Q Consensus 510 ~~~V~~~~~~---Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiT 561 (671)
.+.+++++.. |+.|..|+.++.. +.+++ .++|++.|..
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~dd~~-------------~ar~l-~~~G~~~vmP 150 (248)
T cd04728 110 IETLKAAEILVKEGFTVLPYCTDDPV-------------LAKRL-EDAGCAAVMP 150 (248)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHH-------------HHHHH-HHcCCCEeCC
Confidence 3578888888 9999999999886 66666 5999999966
No 231
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=22.14 E-value=4.2e+02 Score=27.19 Aligned_cols=121 Identities=14% Similarity=0.043 Sum_probs=58.4
Q ss_pred CHHHHhhcHHHHHHh-hceecCCCcceeecCCCCCCcCCCcHHHHHHHHcCCeEEEeeecCCcccCCCCCC-ChHHHHHH
Q 005894 166 TYGSILKNLTAIKSF-ASGIVVPKSYIIPVNNKTRYLEPATTLVTDAHNAGLQVYASGFANDIYSSYSYNF-EPEAEYLT 243 (671)
Q Consensus 166 ~y~~~~~~l~~i~~~-a~~i~~~~~~i~p~~~~~~y~~~~~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~-d~~~e~~~ 243 (671)
+..++.+.+..+..+ +++++++..++-. .......+..+.. .++........-.. ....+.+.
T Consensus 34 ~~~~~~~~~~~a~~~~~~~v~~~p~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~~ 98 (258)
T TIGR01949 34 GLVDIRKTVNEVAEGGADAVLLHKGIVRR--------------GHRGYGKDVGLII-HLSASTSLSPDPNDKRIVTTVED 98 (258)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeCcchhhh--------------cccccCCCCcEEE-EEcCCCCCCCCCCcceeeeeHHH
Confidence 444444455555554 7888777655511 1111223455432 44332211111111 24456778
Q ss_pred HhhcCceeeeeEee-cCCCcc--ccc-------------cCCceEE-ec-cCCC-CCC-CchhHHHHHHHHHCCCCeEEe
Q 005894 244 FIDNSQFAVDGFIT-DFPTTA--TEA-------------IDRPLII-TH-NGAS-GVY-AGCTDLAYQQAVDDGADIIDC 303 (671)
Q Consensus 244 ~i~~g~~~Vdgv~t-d~p~~~--~~~-------------i~~p~iI-AH-RG~s-~~~-PENTl~Af~~Ai~~GaD~IE~ 303 (671)
.++.| +|+|.. ++.... .+. -+.|+++ .+ +|.+ +.. +++-..+-+.|.+.|||+|-+
T Consensus 99 al~~G---a~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt 175 (258)
T TIGR01949 99 AIRMG---ADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKT 175 (258)
T ss_pred HHHCC---CCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEec
Confidence 99989 776655 332111 111 1245554 22 2222 112 233334457888999999996
Q ss_pred c
Q 005894 304 T 304 (671)
Q Consensus 304 D 304 (671)
.
T Consensus 176 ~ 176 (258)
T TIGR01949 176 P 176 (258)
T ss_pred c
Confidence 3
No 232
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=21.84 E-value=8.9e+02 Score=24.94 Aligned_cols=141 Identities=11% Similarity=0.037 Sum_probs=70.9
Q ss_pred CcccCHHHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcCCCce
Q 005894 385 GKFVTLDGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDVPAYK 464 (671)
Q Consensus 385 ~~ipTLeEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~ 464 (671)
...-.|+|+|+.+.++ +.+ +|-..-...-...++.+..+++.+++|. .+...-+=.+++..
T Consensus 22 lg~~~~~dlLe~ag~y--ID~---~K~g~Gt~~l~~~~~l~eki~l~~~~gV------~v~~GGtl~E~a~~-------- 82 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDY--IDF---LKFGWGTSALYPEEILKEKIDLAHSHGV------YVYPGGTLFEVAYQ-------- 82 (244)
T ss_dssp --HHHHHHHHHHHGGG---SE---EEE-TTGGGGSTCHHHHHHHHHHHCTT-------EEEE-HHHHHHHHH--------
T ss_pred CCHHHHHHHHHHhhhh--ccE---EEecCceeeecCHHHHHHHHHHHHHcCC------eEeCCcHHHHHHHh--------
Confidence 4566788889888876 222 4532111111223566777777777754 23332211111111
Q ss_pred EEEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCccccc----chHHHHHHHHcCCeEEEEeccCcccccccccC
Q 005894 465 KVLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTN----ATNILRDLHSANISVYISALRNEYLSIAFDYL 540 (671)
Q Consensus 465 ~~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~----~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~ 540 (671)
...++++.+.|..+|...--+.. +++.. ..++|+.+++.|+.|..-.-.... ..++.
T Consensus 83 -------------q~~~~~yl~~~k~lGf~~IEiSd---Gti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~---~~~~~ 143 (244)
T PF02679_consen 83 -------------QGKFDEYLEECKELGFDAIEISD---GTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDP---ESDFS 143 (244)
T ss_dssp -------------TT-HHHHHHHHHHCT-SEEEE-----SSS---HHHHHHHHHHHCCTTSEEEEEES-SSH---HHHTT
T ss_pred -------------cChHHHHHHHHHHcCCCEEEecC---CceeCCHHHHHHHHHHHHHCCCEEeecccCCCc---hhccc
Confidence 12355566677777764322222 22221 235899999999999988764432 12222
Q ss_pred CCh---HHHHHHHHhhcCccEEEECCh
Q 005894 541 ADP---LIEVATFAQGVGVDGITTEFP 564 (671)
Q Consensus 541 ~D~---~~e~~~~l~~~GVDgIiTD~P 564 (671)
.|+ -.++++.+ ++|++.||.+-=
T Consensus 144 ~~~~~~i~~~~~dL-eAGA~~ViiEar 169 (244)
T PF02679_consen 144 LDPEELIEQAKRDL-EAGADKVIIEAR 169 (244)
T ss_dssp --CCHHHHHHHHHH-HHTECEEEE--T
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEeee
Confidence 222 23566665 899999998754
No 233
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.83 E-value=8.4e+02 Score=24.66 Aligned_cols=132 Identities=11% Similarity=0.071 Sum_probs=68.0
Q ss_pred HHHHHHHhccCcccEEEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCC-hHHHHHHhcC--CCceEEE
Q 005894 391 DGFLEFAKTKAVSGVLININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDD-SSVLSKFQDV--PAYKKVL 467 (671)
Q Consensus 391 eEvL~~~~~~~~~~i~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd-~~~L~~lk~~--p~~~~~~ 467 (671)
.++++.+.+. ++.--+..... +-...+.+.|.+.|+.. =.|-+.+-+ .+.++.+++. .+++.+.
T Consensus 6 ~~~~~~l~~~---~vi~Vvr~~~~-------~~a~~~~~al~~gGi~~---iEiT~~tp~a~~~i~~l~~~~~~~~p~~~ 72 (222)
T PRK07114 6 IAVLTAMKAT---GMVPVFYHADV-------EVAKKVIKACYDGGARV---FEFTNRGDFAHEVFAELVKYAAKELPGMI 72 (222)
T ss_pred HHHHHHHHhC---CEEEEEEcCCH-------HHHHHHHHHHHHCCCCE---EEEeCCCCcHHHHHHHHHHHHHhhCCCeE
Confidence 4677777765 34444443322 33456778888888752 133333321 2334444311 2233222
Q ss_pred EeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHH
Q 005894 468 HIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEV 547 (671)
Q Consensus 468 l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~ 547 (671)
+-..++- +.+..+. |-..|. +++... ..++++++.++++|+.+..-...-. |+
T Consensus 73 vGaGTVl--~~e~a~~----a~~aGA--~FiVsP-----~~~~~v~~~~~~~~i~~iPG~~Tps--------------Ei 125 (222)
T PRK07114 73 LGVGSIV--DAATAAL----YIQLGA--NFIVTP-----LFNPDIAKVCNRRKVPYSPGCGSLS--------------EI 125 (222)
T ss_pred EeeEeCc--CHHHHHH----HHHcCC--CEEECC-----CCCHHHHHHHHHcCCCEeCCCCCHH--------------HH
Confidence 2222221 2222222 223343 333221 2367999999999999887765443 67
Q ss_pred HHHHhhcCccEEEECCh
Q 005894 548 ATFAQGVGVDGITTEFP 564 (671)
Q Consensus 548 ~~~l~~~GVDgIiTD~P 564 (671)
...+ ++|++.|= =||
T Consensus 126 ~~A~-~~Ga~~vK-lFP 140 (222)
T PRK07114 126 GYAE-ELGCEIVK-LFP 140 (222)
T ss_pred HHHH-HCCCCEEE-ECc
Confidence 7774 89998653 344
No 234
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.82 E-value=3.1e+02 Score=24.19 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=26.8
Q ss_pred hHHHHHHHHcCC-eEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEECChhhHH
Q 005894 510 TNILRDLHSANI-SVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPATAS 568 (671)
Q Consensus 510 ~~~V~~~~~~Gl-~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~~~~ 568 (671)
.++++.+++.+. .+.++.-..... . .... +...|+|+++++....+.
T Consensus 68 ~~~i~~l~~~~~~~~~i~vGG~~~~-------~----~~~~-~~~~G~D~~~~~~~~~~~ 115 (119)
T cd02067 68 KEVIEELKEAGLDDIPVLVGGAIVT-------R----DFKF-LKEIGVDAYFGPATEAVE 115 (119)
T ss_pred HHHHHHHHHcCCCCCeEEEECCCCC-------h----hHHH-HHHcCCeEEECCHHHHHH
Confidence 356677777654 344443333320 0 1223 368999999998875444
No 235
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=21.80 E-value=5e+02 Score=27.76 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHH----hcC----CCc--eEEEEeecccCCCChhHHHHHH-HHHHH
Q 005894 422 GVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKF----QDV----PAY--KKVLHIRKEVSAAPREVVEEIK-KYASA 490 (671)
Q Consensus 422 ~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~l----k~~----p~~--~~~~l~~~~~~d~~~~~l~~i~-~~a~~ 490 (671)
.-+.++.+.|.+.|+. .+|-|.|+.......| |.. |.. +..|-++..- ..+.+.++. +..+
T Consensus 166 GrV~aIR~aLD~~G~~----~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n---~~eAlre~~~D~~E- 237 (320)
T cd04824 166 GRVRAIKQALIQAGLG----NKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGA---RGLALRAVERDVSE- 237 (320)
T ss_pred cHHHHHHHHHHHCCCc----cCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcC---HHHHHHHHHhhHHh-
Confidence 5678899999999995 3788888776554432 332 221 2222221110 012232221 2222
Q ss_pred hcCCceeeecCCCcccccchHHHHHHHH-c-CCeEEEEeccCccccccc---ccCCChHH---HHHHHHhhcCccEEEEC
Q 005894 491 VTVTRTSVISTTESFTTNATNILRDLHS-A-NISVYISALRNEYLSIAF---DYLADPLI---EVATFAQGVGVDGITTE 562 (671)
Q Consensus 491 v~~~~~~v~~~~~~~~~~~~~~V~~~~~-~-Gl~V~vwtvn~~~~~~~~---d~~~D~~~---e~~~~l~~~GVDgIiTD 562 (671)
|.+.-+|-|.. .| -.+++++++ . ++++.+|-|.-|..+.-. .-|-|... |....++..|.|.|||=
T Consensus 238 -GAD~lMVKPal-~Y----LDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iDe~~~~~Esl~~ikRAGAd~IiTY 311 (320)
T cd04824 238 -GADMIMVKPGT-PY----LDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITY 311 (320)
T ss_pred -CCCEEEEcCCc-hH----HHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEEee
Confidence 33334555542 12 368888877 4 899999999888633222 22445432 43344468999999999
Q ss_pred ChhhHHHH
Q 005894 563 FPATASKY 570 (671)
Q Consensus 563 ~P~~~~~~ 570 (671)
+-..+.+|
T Consensus 312 fA~~~a~w 319 (320)
T cd04824 312 FTPELLDW 319 (320)
T ss_pred cHHHHHhh
Confidence 98877765
No 236
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.35 E-value=8.8e+02 Score=25.14 Aligned_cols=160 Identities=16% Similarity=0.104 Sum_probs=79.6
Q ss_pred ccCHHHHHHHHhccCcccE-EEEecCchhhhhhcCCcHHHHHHHHHHhcCCCCCCCceEEEEcCChHHHHHHhcCCCceE
Q 005894 387 FVTLDGFLEFAKTKAVSGV-LININNAAYLASKKGLGVVDAVTKALSNATFDKQSTQQVMIQSDDSSVLSKFQDVPAYKK 465 (671)
Q Consensus 387 ipTLeEvL~~~~~~~~~~i-~IeIK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~vii~Sfd~~~L~~lk~~p~~~~ 465 (671)
.|+++..++.+.....-|+ .|||=-+-...-..|.-+.++-.++| +.|... ++ -.+.++++|+.++.|+
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL-~~g~~~---~~------~~~~~~~~r~~~~~p~ 94 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRAL-KQGINL---NK------ILSILSEVNGEIKAPI 94 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHH-HcCCCH---HH------HHHHHHHHhcCCCCCE
Confidence 5777777776553211133 57876442211124444555555555 334431 11 1455666664466776
Q ss_pred EEEeecccCCCChhHHHHHHHHHHHhcCCceeeecCCCcccccchHHHHHHHHcCCeEE-EEeccCcccccccccCCChH
Q 005894 466 VLHIRKEVSAAPREVVEEIKKYASAVTVTRTSVISTTESFTTNATNILRDLHSANISVY-ISALRNEYLSIAFDYLADPL 544 (671)
Q Consensus 466 ~~l~~~~~~d~~~~~l~~i~~~a~~v~~~~~~v~~~~~~~~~~~~~~V~~~~~~Gl~V~-vwtvn~~~~~~~~d~~~D~~ 544 (671)
+++..... +-.-+++++.+.|...|++. .++|.- . .....++.+.++++|+... .-+.+...
T Consensus 95 vlm~Y~N~--i~~~G~e~F~~~~~~aGvdg-viipDL-P-~ee~~~~~~~~~~~gi~~I~lv~PtT~~------------ 157 (263)
T CHL00200 95 VIFTYYNP--VLHYGINKFIKKISQAGVKG-LIIPDL-P-YEESDYLISVCNLYNIELILLIAPTSSK------------ 157 (263)
T ss_pred EEEecccH--HHHhCHHHHHHHHHHcCCeE-EEecCC-C-HHHHHHHHHHHHHcCCCEEEEECCCCCH------------
Confidence 65543221 11223444444455666643 233321 1 1234568888899998643 33333322
Q ss_pred HHHHHHH----------hhcCccEEEECChhhHHHHHHh
Q 005894 545 IEVATFA----------QGVGVDGITTEFPATASKYFRS 573 (671)
Q Consensus 545 ~e~~~~l----------~~~GVDgIiTD~P~~~~~~~~~ 573 (671)
..++.+. ...|+.|.-++.+..+.++++.
T Consensus 158 eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ 196 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIET 196 (263)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHH
Confidence 1333322 1367777776777776666543
No 237
>PF11330 DUF3132: Protein of unknown function (DUF3132); InterPro: IPR021479 This entry is represented by the Citrus psorosis virus, 54kDa protein; it is a family of uncharacterised viral proteins.
Probab=21.34 E-value=78 Score=26.89 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=26.0
Q ss_pred eeceeecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHHc
Q 005894 14 CNLQFSKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQLG 70 (671)
Q Consensus 14 ~DVqlTkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL~ 70 (671)
-||-|-|||+.|.+-|.+=+ + .-| |+|--|+|+.
T Consensus 79 ddvllekdgevvmildsrde----g------------------rmw-ikddvwaevt 112 (124)
T PF11330_consen 79 DDVLLEKDGEVVMILDSRDE----G------------------RMW-IKDDVWAEVT 112 (124)
T ss_pred CeEEEecCCcEEEEEecccc----C------------------cee-eechhHHHHH
Confidence 37889999999999886432 2 457 8888888874
No 238
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=21.26 E-value=98 Score=31.70 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHCCCCeEEeceeEcc-CCeEEEecCCC
Q 005894 284 GCTDLAYQQAVDDGADIIDCTVQMSK-EGVAFCLESPD 320 (671)
Q Consensus 284 ENTl~Af~~Ai~~GaD~IE~DVqlTk-DGv~Vv~HD~~ 320 (671)
.|--..+...++.|+.++|+||+... ++.+.++|...
T Consensus 37 ~~Q~~~i~~QL~~GiR~~dlr~~~~~~~~~~~~~H~~~ 74 (271)
T cd08557 37 KTQDLSITDQLDAGVRYLDLRVAYDPDDGDLYVCHGLF 74 (271)
T ss_pred hccCCCHHHHHhcCceEEEEEeeeecCCCcEEEEcccc
Confidence 45556788999999999999999987 78999999653
No 239
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.23 E-value=9.9e+02 Score=25.72 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=34.7
Q ss_pred chHHHHHHHHcCCeEEEEeccCcccccccccCCChH--HHHHHHHhhcCccEEE-EC-----ChhhHHHHHH
Q 005894 509 ATNILRDLHSANISVYISALRNEYLSIAFDYLADPL--IEVATFAQGVGVDGIT-TE-----FPATASKYFR 572 (671)
Q Consensus 509 ~~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~--~e~~~~l~~~GVDgIi-TD-----~P~~~~~~~~ 572 (671)
..+.++.++++|+.|.+....... .++. .++.+.+.+.|+|.|. .| .|..+.++.+
T Consensus 117 ~~~~i~~ak~~G~~v~~~l~~a~~--------~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~ 180 (337)
T PRK08195 117 SEQHIGLARELGMDTVGFLMMSHM--------APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVR 180 (337)
T ss_pred HHHHHHHHHHCCCeEEEEEEeccC--------CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHH
Confidence 356889999999998877554321 2332 2444444578999875 34 4665555543
No 240
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=20.83 E-value=4.8e+02 Score=26.77 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=52.0
Q ss_pred cHHHHHHHHcCCeEEEeeecCCcccCCCCCCChHHH-HHHHhhcCceeeeeEeecCCCccc---c---ccCCceEEeccC
Q 005894 205 TTLVTDAHNAGLQVYASGFANDIYSSYSYNFEPEAE-YLTFIDNSQFAVDGFITDFPTTAT---E---AIDRPLIITHNG 277 (671)
Q Consensus 205 ~~~V~~ah~~Gl~V~~wtv~~~~~~~~~~~~d~~~e-~~~~i~~g~~~Vdgv~td~p~~~~---~---~i~~p~iIAHRG 277 (671)
..+.+.+|+.|+.+.++-..+-....+ .+.+-..+ .+...+.| +|-|.|.|+.... . ...-|.+++ |
T Consensus 126 ~~i~~~~~~~g~~liv~~~~~Gvh~~~-~~~~~~~~~~~~a~~~G---ADyikt~~~~~~~~l~~~~~~~~iPVva~--G 199 (258)
T TIGR01949 126 GMIAEICDDWGVPLLAMMYPRGPHIDD-RDPELVAHAARLGAELG---ADIVKTPYTGDIDSFRDVVKGCPAPVVVA--G 199 (258)
T ss_pred HHHHHHHHHcCCCEEEEEeccCccccc-ccHHHHHHHHHHHHHHC---CCEEeccCCCCHHHHHHHHHhCCCcEEEe--c
Confidence 467778899999988876532211222 11122222 24556678 9999998874211 1 123566554 4
Q ss_pred CCC-CCCchhHHHHHHHHHCCCCeE
Q 005894 278 ASG-VYAGCTDLAYQQAVDDGADII 301 (671)
Q Consensus 278 ~s~-~~PENTl~Af~~Ai~~GaD~I 301 (671)
+-. .-.|-.+.-...+++.||+++
T Consensus 200 Gi~~~~~~~~~~~i~~~~~aGa~Gi 224 (258)
T TIGR01949 200 GPKTNSDREFLQMIKDAMEAGAAGV 224 (258)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 332 233444556677789999765
No 241
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=20.79 E-value=2.5e+02 Score=28.78 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=26.0
Q ss_pred hHHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEEC
Q 005894 510 TNILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTE 562 (671)
Q Consensus 510 ~~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD 562 (671)
..+++++|+.|++|..+.--+.+ +++.. .+.|+|.|--.
T Consensus 114 ~~~i~~L~~~gIrvSLFiDP~~~-------------qi~~A-~~~Gad~VELh 152 (239)
T PF03740_consen 114 KPVIKRLKDAGIRVSLFIDPDPE-------------QIEAA-KELGADRVELH 152 (239)
T ss_dssp HHHHHHHHHTT-EEEEEE-S-HH-------------HHHHH-HHTT-SEEEEE
T ss_pred HHHHHHHHhCCCEEEEEeCCCHH-------------HHHHH-HHcCCCEEEEe
Confidence 36888999999999888644443 56555 68999988643
No 242
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.67 E-value=9.2e+02 Score=24.70 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=29.6
Q ss_pred chHHHHHHHH-cCCeEEEE-eccCcccccccccCCChHHHHHHHHhhcCccEEEECChh
Q 005894 509 ATNILRDLHS-ANISVYIS-ALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITTEFPA 565 (671)
Q Consensus 509 ~~~~V~~~~~-~Gl~V~vw-tvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiTD~P~ 565 (671)
+.++++++.+ .+++|.+- .+.+.+ ++.+++...||||++.=..-
T Consensus 184 d~~~i~~~~~~~~ipvIasGGv~s~e-------------D~~~l~~~~GvdgVivg~a~ 229 (258)
T PRK01033 184 DLELLKSFRNALKIPLIALGGAGSLD-------------DIVEAILNLGADAAAAGSLF 229 (258)
T ss_pred CHHHHHHHHhhCCCCEEEeCCCCCHH-------------HHHHHHHHCCCCEEEEccee
Confidence 4466666665 46777666 466665 78887547999999865443
No 243
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=20.31 E-value=61 Score=35.99 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=28.2
Q ss_pred ecCCeEEeecCCcccccccccccccccccccccCCcccccccccccCHHHH
Q 005894 19 SKDGLGVCLSDVRLNNITTINGAFKDQQTTKNINGNNVRGWFSVDYTLEQL 69 (671)
Q Consensus 19 TkDG~~Vv~HD~~LdrtT~~~~~~~~~~~~~~~~g~~~~G~~v~d~T~~EL 69 (671)
-+-||+||.||.+|-+-||. +-|.|.+-+..||
T Consensus 750 y~GgVi~VsHDeRLi~eT~C------------------~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 750 YNGGVIMVSHDERLIVETDC------------------NLWVVENQGIDEI 782 (807)
T ss_pred ccCcEEEEecccceeeecCc------------------eEEEEccCChhhc
Confidence 36799999999999999999 8897777777766
No 244
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=20.12 E-value=6.1e+02 Score=25.30 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCeEEEEeccCcccccccccCCChHHHHHHHHhhcCccEEEE-CChhhH
Q 005894 511 NILRDLHSANISVYISALRNEYLSIAFDYLADPLIEVATFAQGVGVDGITT-EFPATA 567 (671)
Q Consensus 511 ~~V~~~~~~Gl~V~vwtvn~~~~~~~~d~~~D~~~e~~~~l~~~GVDgIiT-D~P~~~ 567 (671)
...+.++++|++++.+.-.+.. +-. . -..++.+.+.+.++|-|++ -|...+
T Consensus 40 ~~~~~A~~~gIp~~~~~~~~~~---~~~-~--~~~~~~~~l~~~~~Dliv~agy~~il 91 (207)
T PLN02331 40 GGAEYARENGIPVLVYPKTKGE---PDG-L--SPDELVDALRGAGVDFVLLAGYLKLI 91 (207)
T ss_pred hHHHHHHHhCCCEEEeccccCC---Ccc-c--chHHHHHHHHhcCCCEEEEeCcchhC
Confidence 4578899999999887654310 000 0 0124555567899999998 454433
Done!