BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005896
(671 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 39/195 (20%)
Query: 462 PLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGF 521
P+ + C L V +C +L LE +P D+ +L DL + + F
Sbjct: 23 PVCPFRCQCHLRVVQCSDL-------GLEKVPKDLPPDTALLDLQNN---KITEIKDGDF 72
Query: 522 PT--NLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLP---- 575
NL TL++ N K+ K + L L+ L++ S ++ + P E++ TL
Sbjct: 73 KNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYL--SKNQLKELP-EKMPKTLQELRV 128
Query: 576 -----TSLTHLSFCGFQNLIF-------LSSMG-----FQNLTSLQYLRIGNCPNLTSFP 618
T + F G +I L S G FQ + L Y+RI + N+T+ P
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIP 187
Query: 619 EVGLPSSLLELHIYG 633
+ GLP SL ELH+ G
Sbjct: 188 Q-GLPPSLTELHLDG 201
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 39/195 (20%)
Query: 462 PLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGF 521
P+ + C L V +C +L LE +P D+ +L DL + + F
Sbjct: 23 PVCPFRCQCHLRVVQCSDL-------GLEKVPKDLPPDTALLDLQNN---KITEIKDGDF 72
Query: 522 PT--NLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLP---- 575
NL TL++ N K+ K + L L+ L++ S ++ + P E++ TL
Sbjct: 73 KNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYL--SKNQLKELP-EKMPKTLQELRV 128
Query: 576 -----TSLTHLSFCGFQNLIF-------LSSMG-----FQNLTSLQYLRIGNCPNLTSFP 618
T + F G +I L S G FQ + L Y+RI + N+T+ P
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIP 187
Query: 619 EVGLPSSLLELHIYG 633
+ GLP SL ELH+ G
Sbjct: 188 Q-GLPPSLTELHLDG 201
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 133 FKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSR 192
+ L L L G + ELP ++L LR L+L+ + SLP L+ + +
Sbjct: 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NM 304
Query: 193 LIKLPQEMRNLINLRHLDIRGAKLLKEM 220
+ LP E NL NL+ L + G L K+
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 136 LRMLSLQGYRIGELPIP-FEDLRLLRFLNLADTDIRSLPESKC-KLLNLEILILRNCSRL 193
L+ L L ++G LP+ F+ L L L+L + LP + +L++L+ L + C++L
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-CCNKL 124
Query: 194 IKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSL 253
+LP+ + L +L HL + + LK +P G ++L +L++ + D+ L
Sbjct: 125 TELPRGIERLTHLTHLALDQNQ-LKSIPHG--AFDRLSSLTHAYLFGNPWDCECRDIMYL 181
Query: 254 -NLLCDELCIA---GLENVNSPQNAREAA 278
N + D IA + VN P +A+ A
Sbjct: 182 RNWVADHTSIAMRWDGKAVNDPDSAKCAG 210
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 12/137 (8%)
Query: 502 LRDLGI-QLCPNLVSFPE----EGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIA 556
LR L I QL NLV E G P+ L TL + + +L Q L+ L+ LW+
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPS-LNTLELFDNRLTTVPTQ-AFEYLSKLRELWL- 114
Query: 557 VSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTS 616
++ E P SL L + L ++S F+ L +L+YL +G C NL
Sbjct: 115 -RNNPIESIPSYAFNRV--PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKD 170
Query: 617 FPEVGLPSSLLELHIYG 633
P + L EL + G
Sbjct: 171 IPNLTALVRLEELELSG 187
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 41/161 (25%)
Query: 487 DKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHR 546
+ L ALP + LN LR+L I+ CP L PE T+ + G + GL
Sbjct: 137 NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS----GEHQ--------GLVN 184
Query: 547 LTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIF-------LSSMG--F 597
L SL+ W + +LP S+ +L QNL LS++G
Sbjct: 185 LQSLRLEWTGIR--------------SLPASIANL-----QNLKSLKIRNSPLSALGPAI 225
Query: 598 QNLTSLQYLRIGNCPNLTSFPEV-GLPSSLLELHIYGCPNL 637
+L L+ L + C L ++P + G + L L + C NL
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 130 LPMF--KMLRMLSLQGYRIG-----ELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNL 182
LP F + R+ LQ I ELP + L L LA +R+LP S L L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 183 EILILRNCSRLIKLPQ---------EMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTL 233
L +R C L +LP+ E + L+NL+ L + ++ +P + L L++L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 167 TDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKE 226
T +R+ P L+ LIL++CS L+ LP ++ L L LD+RG L +P + +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 227 L 227
L
Sbjct: 300 L 300
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 486 CDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPE--EGFPTNLTTLV 529
C L LP D+H+L L L ++ C NL P P N LV
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 12/137 (8%)
Query: 502 LRDLGI-QLCPNLVSFPE----EGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIA 556
LR L I QL NLV E G P+ L TL + + +L Q L+ L+ LW+
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPS-LNTLELFDNRLTTVPTQ-AFEYLSKLRELWL- 114
Query: 557 VSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTS 616
++ E P SL L + L ++S F+ L +L+YL +G C NL
Sbjct: 115 -RNNPIESIPSYAFNRV--PSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKD 170
Query: 617 FPEVGLPSSLLELHIYG 633
P + L EL + G
Sbjct: 171 IPNLTALVRLEELELSG 187
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 47/211 (22%)
Query: 74 FERVRHSSYACGGRDGKNMFEV--FNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDL-- 129
F+ +RH R+ E+ FN + +L T R+ N +++ S L +L
Sbjct: 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143
Query: 130 -------LPMFKMLRMLSLQGYRIGELPI-------PFEDLRLLRFLNLADTDIRSLPES 175
+P + R+ SL+ +GEL FE L LR+LNLA ++R +P
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201
Query: 176 KCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTL-- 233
N + LIKL + LD+ G L P + L LQ L
Sbjct: 202 -------------NLTPLIKLDE----------LDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 234 --SNFIVGKGECASGLEDLKSLNLLCDELCI 262
S V + L+ L +NL + L +
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 102 LRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRF 161
L+ LP + GSN ++ + V SD P + L+ + + G +IG +P+ +++L+
Sbjct: 117 LQAGLPANKTVALGSNVEFMCK-VYSDPQPHIQWLKHIEVNGSKIGPDNLPY--VQILKT 173
Query: 162 LNLADTDIRSLPESKCKLLNLEILILRNCS 191
+ TD +E+L LRN S
Sbjct: 174 AGVNTTDKE-----------MEVLHLRNVS 192
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 102 LRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRF 161
L+ LP + GSN ++ + V SD P + L+ + + G +IG +P+ +++L+
Sbjct: 118 LQAGLPANKTVALGSNVEFMCK-VYSDPQPHIQWLKHIEVNGSKIGPDNLPY--VQILKT 174
Query: 162 LNLADTDIRSLPESKCKLLNLEILILRNCS 191
+ TD +E+L LRN S
Sbjct: 175 AGVNTTDKE-----------MEVLHLRNVS 193
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 102 LRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRF 161
L+ LP + GSN ++ + V SD P + L+ + + G +IG +P+ +++L+
Sbjct: 117 LQAGLPANKTVALGSNVEFMCK-VYSDPQPHIQWLKHIEVNGSKIGPDNLPY--VQILKT 173
Query: 162 LNLADTDIRSLPESKCKLLNLEILILRNCS 191
+ TD +E+L LRN S
Sbjct: 174 AGVNTTDKE-----------MEVLHLRNVS 192
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 132 MFKMLRMLSLQGY---RIGELPIPFEDLRLLRFLNLADTDIR-SLPESKCKLLNLEILIL 187
MF + L GY IG +P F LNL DI S+P+ L L IL L
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLF-------ILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 188 RNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTL--SNFIVGKGECA 244
+ ++PQ M L L +D+ L +P E+ + +T + F+ G C
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP----EMGQFETFPPAKFLNNPGLCG 739
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 147 GELPIPFEDLRLLRFLNLADTDIRS-LPESKCKLLNLEILILRNCSRLIKLPQEMRNLIN 205
GE+P + L +++L++ + +P+ +L NL IL L N S +P E+ + +
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 206 LRHLDIRGAKLLKEMPFGM-KELNKLQTLSNFIVGK 240
L LD+ +P M K+ K+ +NFI GK
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIA--ANFIAGK 570
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 132 MFKMLRMLSLQGY---RIGELPIPFEDLRLLRFLNLADTDIR-SLPESKCKLLNLEILIL 187
MF + L GY IG +P F LNL DI S+P+ L L IL L
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLF-------ILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 188 RNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTL--SNFIVGKGECA 244
+ ++PQ M L L +D+ L +P E+ + +T + F+ G C
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP----EMGQFETFPPAKFLNNPGLCG 742
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 147 GELPIPFEDLRLLRFLNLADTDIRS-LPESKCKLLNLEILILRNCSRLIKLPQEMRNLIN 205
GE+P + L +++L++ + +P+ +L NL IL L N S +P E+ + +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 206 LRHLDIRGAKLLKEMPFGM-KELNKLQTLSNFIVGK 240
L LD+ +P M K+ K+ +NFI GK
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIA--ANFIAGK 573
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 31/151 (20%)
Query: 484 CGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFP--TNLTTLVIGNFKLYKTLVQ 541
C KL A+P+++ DL L S P + F T L L + + KL +TL
Sbjct: 23 CSSKKLTAIPSNIPADTKKLDLQSN---KLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPA 78
Query: 542 WGLHRLTSLKHLWIAVSDDEAECFP----DEEIGM-----------TLP-------TSLT 579
L +L+ LW V+D++ + P D+ + + +LP T LT
Sbjct: 79 GIFKELKNLETLW--VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 580 HLSFCGFQNLIFLSSMGFQNLTSLQYLRIGN 610
+LS G+ L L F LTSL+ LR+ N
Sbjct: 137 YLSL-GYNELQSLPKGVFDKLTSLKELRLYN 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 136 LRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCS 191
L L L G I L + F L L+ L +T++ SL P K L E+ + N
Sbjct: 79 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLI 137
Query: 192 RLIKLPQEMRNLINLRHLDIRGAKL 216
+ KLP+ NL NL HLD+ K+
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 136 LRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCS 191
L L L G I L + F L L+ L +T++ SL P K L E+ + N
Sbjct: 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLI 160
Query: 192 RLIKLPQEMRNLINLRHLDIRGAKL 216
+ KLP+ NL NL HLD+ K+
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 136 LRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCS 191
L L L G I L + F L L+ L +T++ SL P K L E+ + N
Sbjct: 79 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLI 137
Query: 192 RLIKLPQEMRNLINLRHLDIRGAKL 216
+ KLP+ NL NL HLD+ K+
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 136 LRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCS 191
L L L G I L + F L L+ L +T++ SL P K L E+ + N
Sbjct: 80 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLI 138
Query: 192 RLIKLPQEMRNLINLRHLDIRGAKL 216
+ KLP+ NL NL HLD+ K+
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 136 LRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCS 191
L L L G I L + F L L+ L +T++ SL P K L E+ + N
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLI 136
Query: 192 RLIKLPQEMRNLINLRHLDIRGAKL 216
+ KLP+ NL NL HLD+ K+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 28/93 (30%)
Query: 152 PFEDLRLLRFLNLA----DT----------DIRSL----------PESKCKLL----NLE 183
PF++L LLR LNL+ DT D+R L SK LL +LE
Sbjct: 419 PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLE 478
Query: 184 ILILRNCSRLIKLPQEMRNLINLRHLDIRGAKL 216
ILIL +C+ L Q L N+ HLD+ L
Sbjct: 479 ILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 136 LRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCS 191
L L L G I L + F L L+ L +T++ SL P K L E+ + N
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLI 136
Query: 192 RLIKLPQEMRNLINLRHLDIRGAKL 216
+ KLP+ NL NL HLD+ K+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 136 LRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCS 191
L L L G I L + F L L+ L +T++ SL P K L E+ + N
Sbjct: 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-ELNVAHNLI 136
Query: 192 RLIKLPQEMRNLINLRHLDIRGAKL 216
+ KLP+ NL NL HLD+ K+
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 135 MLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCK-LLNLEILILR--NCS 191
MLR ++L+ I P PF LR L L+L++ +I ++ E + L NLEIL + N +
Sbjct: 460 MLRRVALKNVDIS--PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Query: 192 RLIKLPQ---EMRNLINLRHLDIRG--AKLLKEMPFGM-KELNKLQTL 233
RL K + L L HL I + L E+P G+ K L +L+++
Sbjct: 518 RLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSI 565
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 23/129 (17%)
Query: 500 NSLRDLGIQLCPNLVSFPE-EGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVS 558
NS+R + + L S E F LT + G F+ L+ L+ LW+
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY-----------LSKLRELWL--R 155
Query: 559 DDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNC-----PN 613
++ E P SL L + L ++S F+ L +L+YL +G C PN
Sbjct: 156 NNPIESIPSYAFNRV--PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213
Query: 614 LTSFPEVGL 622
LT P VGL
Sbjct: 214 LT--PLVGL 220
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 136 LRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCS 191
L L L G I L + F L L+ L +T++ SL P K L E+ + N
Sbjct: 80 LSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLK-ELNVAHNLI 138
Query: 192 RLIKLPQEMRNLINLRHLDIRGAKL 216
+ KLP+ NL NL HLD+ K+
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 523 TNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLS 582
NL L++ + ++ T+ + L SL+HL +SD+ G +SL +L+
Sbjct: 76 ANLQVLILKSSRI-NTIEGDAFYSLGSLEHL--DLSDNHLSSLSSSWFGPL--SSLKYLN 130
Query: 583 FCG--FQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLP--SSLLELHI 631
G +Q L S F NLT+LQ LRIGN + + +SL EL I
Sbjct: 131 LMGNPYQTLGVTSL--FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 181
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 605 YLRIGNCPNLTSFPEVGLPSSLLELHIYGCPNLKKACKRDQGKEWPKIAHIPFVGIDRKF 664
YL PN E + LL LH+Y C KA W A +PF +D+KF
Sbjct: 357 YLYFHKAPNAKELHEETV-RKLLALHMYDCARANKAM-----SAWGVEARVPF--LDKKF 408
Query: 665 I 665
+
Sbjct: 409 L 409
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 523 TNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLS 582
NL L++ + ++ T+ + L SL+HL +SD+ G +SL +L+
Sbjct: 50 ANLQVLILKSSRI-NTIEGDAFYSLGSLEHL--DLSDNHLSSLSSSWFGPL--SSLKYLN 104
Query: 583 FCG--FQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLP--SSLLELHI 631
G +Q L S F NLT+LQ LRIGN + + +SL EL I
Sbjct: 105 LMGNPYQTLGVTSL--FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 587 QNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLPSSL 626
NL++++ FQNL +LQYL I N + P+V SL
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSL 128
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 587 QNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLPSSL 626
NL++++ FQNL +LQYL I N + P+V SL
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSL 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,372,953
Number of Sequences: 62578
Number of extensions: 787603
Number of successful extensions: 1811
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1742
Number of HSP's gapped (non-prelim): 93
length of query: 671
length of database: 14,973,337
effective HSP length: 105
effective length of query: 566
effective length of database: 8,402,647
effective search space: 4755898202
effective search space used: 4755898202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)