Query 005896
Match_columns 671
No_of_seqs 464 out of 3664
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 15:21:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.3E-42 1.4E-46 398.0 25.6 503 74-635 68-582 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.8E-40 2.1E-44 379.7 23.5 503 74-636 92-606 (968)
3 PLN03210 Resistant to P. syrin 100.0 8.8E-34 1.9E-38 329.1 28.4 448 22-639 471-945 (1153)
4 KOG4658 Apoptotic ATPase [Sign 100.0 4.8E-32 1E-36 297.7 13.0 225 1-238 438-675 (889)
5 KOG4194 Membrane glycoprotein 100.0 2.8E-31 6.1E-36 261.5 3.1 376 159-650 80-464 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 9E-34 1.9E-38 267.1 -17.4 262 78-376 48-309 (565)
7 KOG0472 Leucine-rich repeat pr 100.0 3.9E-32 8.4E-37 256.1 -9.7 440 92-612 83-539 (565)
8 KOG4194 Membrane glycoprotein 100.0 6.8E-30 1.5E-34 251.8 2.8 223 100-375 78-304 (873)
9 PLN03210 Resistant to P. syrin 99.9 4.7E-26 1E-30 264.8 23.5 133 497-640 775-909 (1153)
10 KOG0444 Cytoskeletal regulator 99.9 1.2E-28 2.6E-33 244.7 -3.7 364 74-518 6-380 (1255)
11 KOG0618 Serine/threonine phosp 99.9 7.4E-29 1.6E-33 257.6 -5.5 456 101-636 22-488 (1081)
12 KOG0618 Serine/threonine phosp 99.9 2.2E-28 4.7E-33 254.1 -8.7 441 96-611 41-510 (1081)
13 KOG0444 Cytoskeletal regulator 99.9 3.9E-28 8.5E-33 241.1 -7.3 363 133-593 6-379 (1255)
14 KOG4237 Extracellular matrix p 99.7 5.1E-20 1.1E-24 174.4 -2.4 102 137-239 70-175 (498)
15 PRK15387 E3 ubiquitin-protein 99.7 1.4E-16 3.1E-21 172.1 16.7 256 283-613 201-457 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 8.4E-17 1.8E-21 174.0 13.8 79 134-222 201-279 (788)
17 KOG4237 Extracellular matrix p 99.7 3.1E-18 6.8E-23 162.4 -3.0 115 123-239 80-199 (498)
18 PRK15370 E3 ubiquitin-protein 99.6 1.1E-15 2.4E-20 166.5 12.2 83 134-224 178-260 (754)
19 PRK15370 E3 ubiquitin-protein 99.6 8.1E-15 1.8E-19 159.8 11.2 243 316-612 178-426 (754)
20 KOG0617 Ras suppressor protein 99.6 4.9E-17 1.1E-21 136.5 -4.9 102 132-234 31-133 (264)
21 KOG0617 Ras suppressor protein 99.6 6.9E-17 1.5E-21 135.6 -4.1 152 90-254 23-176 (264)
22 KOG4658 Apoptotic ATPase [Sign 99.5 1.9E-14 4.1E-19 159.4 7.9 150 94-256 517-670 (889)
23 cd00116 LRR_RI Leucine-rich re 99.3 5.4E-13 1.2E-17 135.4 3.0 135 93-237 16-174 (319)
24 cd00116 LRR_RI Leucine-rich re 99.3 4.4E-13 9.4E-18 136.1 0.0 115 125-239 14-148 (319)
25 KOG4341 F-box protein containi 99.1 1.2E-12 2.5E-17 126.1 -6.7 281 342-640 139-442 (483)
26 PF14580 LRR_9: Leucine-rich r 99.1 1.7E-10 3.6E-15 102.5 5.0 133 93-239 12-151 (175)
27 KOG0532 Leucine-rich repeat (L 99.0 1.7E-11 3.7E-16 122.7 -3.2 120 132-254 73-192 (722)
28 PF14580 LRR_9: Leucine-rich r 98.9 3.9E-10 8.4E-15 100.1 3.0 107 130-240 15-125 (175)
29 COG4886 Leucine-rich repeat (L 98.9 8.1E-10 1.8E-14 115.4 5.0 107 130-238 112-219 (394)
30 KOG4341 F-box protein containi 98.9 2.3E-11 4.9E-16 117.4 -7.1 260 364-641 138-418 (483)
31 KOG3207 Beta-tubulin folding c 98.9 6.6E-10 1.4E-14 108.1 2.7 153 75-237 121-280 (505)
32 KOG0532 Leucine-rich repeat (L 98.9 4.5E-11 9.8E-16 119.7 -6.2 108 129-239 93-200 (722)
33 COG4886 Leucine-rich repeat (L 98.9 1.2E-09 2.7E-14 114.0 4.1 198 137-381 96-294 (394)
34 KOG1259 Nischarin, modulator o 98.8 7.3E-10 1.6E-14 102.3 1.1 55 159-215 286-340 (490)
35 KOG3207 Beta-tubulin folding c 98.8 3.8E-10 8.3E-15 109.7 -1.2 177 423-611 145-336 (505)
36 KOG1259 Nischarin, modulator o 98.7 1.6E-09 3.4E-14 100.1 -0.6 135 132-300 282-416 (490)
37 PF13855 LRR_8: Leucine rich r 98.7 1.4E-08 3E-13 73.9 4.4 57 134-190 1-59 (61)
38 PLN03150 hypothetical protein; 98.7 3E-08 6.5E-13 108.4 7.6 102 135-236 419-523 (623)
39 KOG1909 Ran GTPase-activating 98.6 3E-09 6.5E-14 100.7 -2.3 256 128-437 24-310 (382)
40 PRK15386 type III secretion pr 98.6 3.4E-07 7.4E-12 91.5 11.5 160 423-639 51-215 (426)
41 PF13855 LRR_8: Leucine rich r 98.6 6E-08 1.3E-12 70.5 3.9 58 157-215 1-60 (61)
42 PRK15386 type III secretion pr 98.6 4.3E-07 9.3E-12 90.8 10.7 136 466-634 51-187 (426)
43 KOG0531 Protein phosphatase 1, 98.5 1.6E-08 3.4E-13 105.7 -0.5 108 129-240 90-198 (414)
44 PLN03150 hypothetical protein; 98.5 2.5E-07 5.5E-12 101.2 8.1 110 102-221 420-532 (623)
45 KOG1909 Ran GTPase-activating 98.5 2.9E-08 6.3E-13 94.2 -0.1 239 93-375 23-309 (382)
46 KOG0531 Protein phosphatase 1, 98.4 3.2E-08 6.9E-13 103.5 -0.6 107 131-241 69-175 (414)
47 PF12799 LRR_4: Leucine Rich r 98.3 5.4E-07 1.2E-11 59.7 3.5 38 158-196 2-39 (44)
48 PF12799 LRR_4: Leucine Rich r 98.2 8.8E-07 1.9E-11 58.7 3.1 40 134-173 1-40 (44)
49 KOG2120 SCF ubiquitin ligase, 98.2 2.7E-08 5.9E-13 92.1 -7.5 177 424-611 185-373 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.1 6E-07 1.3E-11 82.3 -0.0 89 132-221 28-136 (388)
51 KOG3665 ZYG-1-like serine/thre 98.0 4.5E-06 9.7E-11 91.1 4.3 131 75-216 122-262 (699)
52 KOG4579 Leucine-rich repeat (L 98.0 1.6E-06 3.4E-11 71.2 0.3 92 130-223 49-141 (177)
53 KOG2982 Uncharacterized conser 98.0 1.2E-06 2.6E-11 81.4 -0.4 80 135-215 46-132 (418)
54 KOG2120 SCF ubiquitin ligase, 97.9 5.9E-07 1.3E-11 83.5 -3.5 180 158-375 186-374 (419)
55 KOG3665 ZYG-1-like serine/thre 97.8 9.3E-06 2E-10 88.7 3.2 134 98-241 120-263 (699)
56 KOG4579 Leucine-rich repeat (L 97.8 3E-06 6.4E-11 69.6 -0.5 95 95-200 48-142 (177)
57 KOG1859 Leucine-rich repeat pr 97.8 5.2E-07 1.1E-11 93.7 -6.2 103 135-242 165-268 (1096)
58 KOG1859 Leucine-rich repeat pr 97.8 7.2E-07 1.6E-11 92.7 -5.6 113 123-239 176-290 (1096)
59 KOG2982 Uncharacterized conser 97.8 5.8E-06 1.2E-10 77.0 0.5 85 130-215 67-157 (418)
60 KOG1644 U2-associated snRNP A' 97.6 8.3E-05 1.8E-09 65.7 4.9 104 133-239 41-151 (233)
61 KOG1947 Leucine rich repeat pr 97.4 7.1E-06 1.5E-10 88.5 -5.3 35 340-374 187-224 (482)
62 KOG1947 Leucine rich repeat pr 97.4 8.1E-06 1.8E-10 88.1 -5.5 12 339-350 212-223 (482)
63 KOG2123 Uncharacterized conser 97.4 1.1E-05 2.5E-10 74.4 -3.7 100 133-235 18-124 (388)
64 KOG2739 Leucine-rich acidic nu 97.3 9.1E-05 2E-09 68.4 1.6 109 129-241 38-156 (260)
65 KOG1644 U2-associated snRNP A' 97.3 0.00023 5E-09 63.0 3.7 84 130-214 60-150 (233)
66 KOG2123 Uncharacterized conser 97.1 5E-05 1.1E-09 70.3 -1.9 81 129-210 36-123 (388)
67 COG5238 RNA1 Ran GTPase-activa 96.7 0.0016 3.4E-08 60.4 3.9 113 93-215 23-168 (388)
68 PF13306 LRR_5: Leucine rich r 96.7 0.0049 1.1E-07 52.6 6.7 119 94-230 6-128 (129)
69 PF00560 LRR_1: Leucine Rich R 96.6 0.00087 1.9E-08 36.8 0.8 18 159-176 2-19 (22)
70 KOG3864 Uncharacterized conser 96.2 0.00043 9.3E-09 61.4 -2.6 90 524-616 102-191 (221)
71 KOG2739 Leucine-rich acidic nu 96.2 0.0028 6.1E-08 58.8 2.1 89 149-239 35-127 (260)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.0048 1E-07 33.8 1.4 22 135-156 1-22 (22)
73 PF13306 LRR_5: Leucine rich r 95.6 0.031 6.7E-07 47.6 6.2 103 125-234 3-109 (129)
74 KOG0473 Leucine-rich repeat pr 95.5 0.00078 1.7E-08 60.9 -4.2 88 129-217 37-124 (326)
75 PF13504 LRR_7: Leucine rich r 94.8 0.016 3.4E-07 29.4 1.1 10 160-169 4-13 (17)
76 KOG0473 Leucine-rich repeat pr 94.6 0.002 4.2E-08 58.4 -4.3 92 146-239 30-122 (326)
77 PF13504 LRR_7: Leucine rich r 94.2 0.031 6.7E-07 28.3 1.4 17 134-150 1-17 (17)
78 KOG3864 Uncharacterized conser 92.7 0.016 3.5E-07 51.7 -1.9 62 496-557 121-185 (221)
79 smart00369 LRR_TYP Leucine-ric 92.5 0.1 2.2E-06 29.9 1.9 19 157-175 2-20 (26)
80 smart00370 LRR Leucine-rich re 92.5 0.1 2.2E-06 29.9 1.9 19 157-175 2-20 (26)
81 smart00370 LRR Leucine-rich re 89.9 0.27 5.9E-06 28.0 2.0 20 179-199 1-20 (26)
82 smart00369 LRR_TYP Leucine-ric 89.9 0.27 5.9E-06 28.0 2.0 20 179-199 1-20 (26)
83 smart00367 LRR_CC Leucine-rich 83.8 0.7 1.5E-05 26.3 1.4 15 601-615 2-16 (26)
84 smart00365 LRR_SD22 Leucine-ri 80.3 1.3 2.7E-05 25.4 1.5 16 157-172 2-17 (26)
85 smart00364 LRR_BAC Leucine-ric 78.4 1.3 2.8E-05 25.2 1.1 17 158-174 3-19 (26)
86 PF13516 LRR_6: Leucine Rich r 75.4 1 2.2E-05 25.0 0.2 13 158-170 3-15 (24)
87 KOG4308 LRR-containing protein 60.2 0.38 8.2E-06 50.9 -6.5 66 125-190 106-182 (478)
88 smart00368 LRR_RI Leucine rich 58.7 7 0.00015 22.7 1.5 14 157-170 2-15 (28)
89 KOG3763 mRNA export factor TAP 43.3 10 0.00022 39.9 0.8 35 522-557 217-253 (585)
90 TIGR00864 PCC polycystin catio 42.1 5.6 0.00012 50.2 -1.5 28 583-611 2-29 (2740)
91 KOG3763 mRNA export factor TAP 39.6 9.2 0.0002 40.2 -0.2 35 316-351 218-254 (585)
92 PF05725 FNIP: FNIP Repeat; I 36.7 71 0.0015 20.9 3.8 32 601-633 12-43 (44)
93 PF14162 YozD: YozD-like prote 34.7 51 0.0011 22.2 2.7 23 14-36 9-31 (57)
94 COG3432 Predicted transcriptio 25.0 2.5E+02 0.0053 22.3 5.5 34 15-48 44-77 (95)
95 KOG4308 LRR-containing protein 24.0 6.4 0.00014 41.8 -4.5 115 127-242 165-304 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.3e-42 Score=398.00 Aligned_cols=503 Identities=17% Similarity=0.211 Sum_probs=381.1
Q ss_pred CCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcc-ccCcc
Q 005896 74 FERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIG-ELPIP 152 (671)
Q Consensus 74 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~ 152 (671)
...++.+++..+.+.. ..+..+..+++|++|.+.+ |.+...++...|..+++||+|+|++|.+. .+|.
T Consensus 68 ~~~v~~L~L~~~~i~~-~~~~~~~~l~~L~~L~Ls~---------n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~- 136 (968)
T PLN00113 68 SSRVVSIDLSGKNISG-KISSAIFRLPYIQTINLSN---------NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR- 136 (968)
T ss_pred CCcEEEEEecCCCccc-cCChHHhCCCCCCEEECCC---------CccCCcCChHHhccCCCCCEEECcCCccccccCc-
Confidence 3578899998876655 3357788999999999999 55556788888889999999999999984 5554
Q ss_pred cCCCCccceeecCCCccc-ccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCC
Q 005896 153 FEDLRLLRFLNLADTDIR-SLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQ 231 (671)
Q Consensus 153 ~~~l~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 231 (671)
+.+++|++|+|++|.++ .+|..++.+++|++|++++|.....+|..++++++|++|++++|.+.+.+|..++++++|+
T Consensus 137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 46899999999999998 6799999999999999999955668999999999999999999998888999999999999
Q ss_pred ccceeEecCCc-ccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhc
Q 005896 232 TLSNFIVGKGE-CASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLD 310 (671)
Q Consensus 232 ~L~~~~~~~~~-~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (671)
+|++..+.... .+..++.+.+|+.|. + ..+......+..++++++|+.|++++|.+.+..+ .
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~--L------~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---------~ 278 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLD--L------VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP---------P 278 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEE--C------cCceeccccChhHhCCCCCCEEECcCCeeeccCc---------h
Confidence 99988776543 333355666666553 1 1222334456678889999999999888744332 2
Q ss_pred cCCCCCCCcEEEEeccCCc-cCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCC
Q 005896 311 TLQPHERIKELAIKHYGGA-RFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEG 388 (671)
Q Consensus 311 ~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 388 (671)
.+..+++|+.|++++|... .+|.++. .+++|+.|++++|.+.+..| .++.+++|+.|++++|.....++..+..
T Consensus 279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-- 354 (968)
T PLN00113 279 SIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-- 354 (968)
T ss_pred hHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC--
Confidence 3445678999999988754 5677776 58899999999999887777 6889999999999998776666655544
Q ss_pred ccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCC---CCCCCccEEEEeccCC---cCcc
Q 005896 389 FSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP---GLLPSLETLVVRKCGK---LVVP 462 (671)
Q Consensus 389 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~---l~~~ 462 (671)
+++|+.|+++++.........+.. +++|+.|++++ +.+.+.+| ..+++|+.|++++|.. ++..
T Consensus 355 ----~~~L~~L~Ls~n~l~~~~p~~~~~------~~~L~~L~l~~-n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 355 ----HNNLTVLDLSTNNLTGEIPEGLCS------SGNLFKLILFS-NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred ----CCCCcEEECCCCeeEeeCChhHhC------cCCCCEEECcC-CEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 889999999887543333332222 67888898888 46666777 3578888998888854 3445
Q ss_pred CCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCccccccc
Q 005896 463 LSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQW 542 (671)
Q Consensus 463 ~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 542 (671)
+..+++|+.|++++|... +.+|..+..+++|+.|++++|.....+|.....++|+.|++++|+..+..+.
T Consensus 424 ~~~l~~L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~- 493 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQ---------GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR- 493 (968)
T ss_pred HhcCCCCCEEECcCCccc---------CccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh-
Confidence 667888899999888743 3456566778888888888887666666655567888888877765555544
Q ss_pred ccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCC-CC
Q 005896 543 GLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPE-VG 621 (671)
Q Consensus 543 ~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~ 621 (671)
.+.++++|+.|++++ |.....+|. .+ ..+++|++|++++|.-...+| ..+..+++|++|++++|+....+|. ..
T Consensus 494 ~~~~l~~L~~L~Ls~-N~l~~~~p~-~~--~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 494 KLGSLSELMQLKLSE-NKLSGEIPD-EL--SSCKKLVSLDLSHNQLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred hhhhhhccCEEECcC-CcceeeCCh-HH--cCccCCCEEECCCCcccccCC-hhHhCcccCCEEECCCCcccccCChhHh
Confidence 477888888888888 555556665 44 467888888888844333455 7778888888888888865556665 23
Q ss_pred CCCCccEEEEeCCh
Q 005896 622 LPSSLLELHIYGCP 635 (671)
Q Consensus 622 ~~~~L~~L~l~~c~ 635 (671)
.+++|+.|++++|+
T Consensus 569 ~l~~L~~l~ls~N~ 582 (968)
T PLN00113 569 NVESLVQVNISHNH 582 (968)
T ss_pred cCcccCEEeccCCc
Confidence 46788888888886
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.8e-40 Score=379.66 Aligned_cols=503 Identities=19% Similarity=0.206 Sum_probs=392.9
Q ss_pred CCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcc-ccCcc
Q 005896 74 FERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIG-ELPIP 152 (671)
Q Consensus 74 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~ 152 (671)
...++.+.+..+.+........+..+++||.|.+.+ |.....++. ..+++|++|+|++|.+. .+|..
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~---------n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~ 159 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN---------NNFTGSIPR---GSIPNLETLDLSNNMLSGEIPND 159 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcC---------CccccccCc---cccCCCCEEECcCCcccccCChH
Confidence 357888899888665433333455899999999998 444444443 46889999999999985 78888
Q ss_pred cCCCCccceeecCCCccc-ccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCC
Q 005896 153 FEDLRLLRFLNLADTDIR-SLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQ 231 (671)
Q Consensus 153 ~~~l~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 231 (671)
++.+++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.+.+.+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 999999999999999987 7799999999999999999966668999999999999999999998888999999999999
Q ss_pred ccceeEecCCc-ccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhc
Q 005896 232 TLSNFIVGKGE-CASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLD 310 (671)
Q Consensus 232 ~L~~~~~~~~~-~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (671)
+|++..+.... .+..+.++.+|+.|. + ..+......+..+..+++|+.|++++|.+.+..+ .
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~--L------~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p---------~ 302 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLF--L------YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP---------E 302 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEE--C------cCCeeeccCchhHhhccCcCEEECcCCeeccCCC---------h
Confidence 99998776542 333356666666553 1 1222334456678889999999999998743322 3
Q ss_pred cCCCCCCCcEEEEeccCCc-cCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCC
Q 005896 311 TLQPHERIKELAIKHYGGA-RFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEG 388 (671)
Q Consensus 311 ~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 388 (671)
.+..+++|+.|++.++... .+|.++. .+++|+.|++++|.+.+.+| .++.+++|+.|++++|.....++..+..
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-- 378 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-- 378 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC--
Confidence 3456789999999998764 5677776 59999999999999988888 7899999999999999877777766655
Q ss_pred ccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCCC---CCCCccEEEEeccCCc---Ccc
Q 005896 389 FSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPG---LLPSLETLVVRKCGKL---VVP 462 (671)
Q Consensus 389 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l---~~~ 462 (671)
+++|+.|++.++.........+.. +++|+.|++++ +++++.+|. .+++|+.|++++|... ...
T Consensus 379 ----~~~L~~L~l~~n~l~~~~p~~~~~------~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 447 (968)
T PLN00113 379 ----SGNLFKLILFSNSLEGEIPKSLGA------CRSLRRVRLQD-NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447 (968)
T ss_pred ----cCCCCEEECcCCEecccCCHHHhC------CCCCCEEECcC-CEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence 789999999987644333333333 89999999999 477777774 6789999999998643 333
Q ss_pred CCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCC-CCCCCcceEEEccCcCcccccc
Q 005896 463 LSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEE-GFPTNLTTLVIGNFKLYKTLVQ 541 (671)
Q Consensus 463 ~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~ 541 (671)
+..+++|+.|++++|... +.+|..+ ..++|+.|++++|.....+|.. ..+++|+.|++++|+..+.+|.
T Consensus 448 ~~~l~~L~~L~L~~n~~~---------~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFF---------GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517 (968)
T ss_pred hccCCCCcEEECcCceee---------eecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh
Confidence 456899999999999854 4555443 5689999999999655566543 5678999999988876666665
Q ss_pred cccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCC
Q 005896 542 WGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVG 621 (671)
Q Consensus 542 ~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 621 (671)
.+.++++|+.|++++ |...+.+|. .+ ..+++|+.|++++|.....+| ..+..+++|++|++++|+....+|..+
T Consensus 518 -~~~~l~~L~~L~Ls~-N~l~~~~p~-~~--~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 518 -ELSSCKKLVSLDLSH-NQLSGQIPA-SF--SEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred -HHcCccCCCEEECCC-CcccccCCh-hH--hCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCCCcc
Confidence 588999999999999 555556665 45 578999999999966555788 788999999999999998777888766
Q ss_pred CCCCccEEEEeCChh
Q 005896 622 LPSSLLELHIYGCPN 636 (671)
Q Consensus 622 ~~~~L~~L~l~~c~~ 636 (671)
.+.++....+.+++.
T Consensus 592 ~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 592 AFLAINASAVAGNID 606 (968)
T ss_pred hhcccChhhhcCCcc
Confidence 655555555555553
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-34 Score=329.07 Aligned_cols=448 Identities=20% Similarity=0.275 Sum_probs=294.9
Q ss_pred HHHHHHhCCCCeeecCCCcCeEEEchhHHHHHHHhhhcce-------EEeccCC-----cccccCCceeEEEeEeCCCCC
Q 005896 22 CFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVSGETI-------FRLEEAN-----TLSRRFERVRHSSYACGGRDG 89 (671)
Q Consensus 22 ~~~~L~~~~ll~~~~~~~~~~~~mHdlv~dl~~~~~~~~~-------~~~~~~~-----~~~~~~~~~~~lsl~~~~~~~ 89 (671)
-++.|+++|||+... +.++|||++||||+++++++. +.+.... .......+++.+++.......
T Consensus 471 ~l~~L~~ksLi~~~~----~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~ 546 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE----DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE 546 (1153)
T ss_pred ChHHHHhcCCEEEcC----CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce
Confidence 488999999998864 679999999999999998753 1111110 001134567777776554432
Q ss_pred c-cchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCc
Q 005896 90 K-NMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTD 168 (671)
Q Consensus 90 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~ 168 (671)
. ....+|.+|++|+.|.+...... ..+.....++.++..-.++||.|++.++.+..+|..| ...+|++|++++|.
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~---~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWD---QKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK 622 (1153)
T ss_pred eeecHHHHhcCccccEEEEeccccc---ccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc
Confidence 2 22456888999999988661100 0011112334433333457899999998888888877 57889999999998
Q ss_pred ccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCccccccc
Q 005896 169 IRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLE 248 (671)
Q Consensus 169 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~ 248 (671)
++.+|..+..+++|++|+|++|..++.+|. ++.+++|++|++++|..+..+|..++++++|+.|++..+
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c---------- 691 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC---------- 691 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC----------
Confidence 888888888899999999988877788886 888889999999888777777777766666666653211
Q ss_pred CchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCC
Q 005896 249 DLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGG 328 (671)
Q Consensus 249 ~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 328 (671)
..+
T Consensus 692 --~~L--------------------------------------------------------------------------- 694 (1153)
T PLN03210 692 --ENL--------------------------------------------------------------------------- 694 (1153)
T ss_pred --CCc---------------------------------------------------------------------------
Confidence 000
Q ss_pred ccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCccccc
Q 005896 329 ARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQ 408 (671)
Q Consensus 329 ~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 408 (671)
..+|..+ .+++|+.|++++|.....+|.+ .++|+.|+++++. ++.+|..+ .
T Consensus 695 ~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP~~~-------~---------------- 745 (1153)
T PLN03210 695 EILPTGI---NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFPSNL-------R---------------- 745 (1153)
T ss_pred CccCCcC---CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-cccccccc-------c----------------
Confidence 1123222 2667777777777665555532 3567777777664 22222111 0
Q ss_pred ccccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCC
Q 005896 409 HWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDK 488 (671)
Q Consensus 409 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~ 488 (671)
+++|++|.+.+|... .++..+..+. ......+++|+.|++++|+.+
T Consensus 746 --------------l~~L~~L~l~~~~~~--~l~~~~~~l~----------~~~~~~~~sL~~L~Ls~n~~l-------- 791 (1153)
T PLN03210 746 --------------LENLDELILCEMKSE--KLWERVQPLT----------PLMTMLSPSLTRLFLSDIPSL-------- 791 (1153)
T ss_pred --------------ccccccccccccchh--hccccccccc----------hhhhhccccchheeCCCCCCc--------
Confidence 455555555443211 1111110000 011122466777777776643
Q ss_pred CccCcccCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcc
Q 005896 489 LEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDE 568 (671)
Q Consensus 489 l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~ 568 (671)
..+|..+.++++|+.|++++|..++.+|....+++|+.|++++|..+..+|.. .++|+.|++++ +.++.+|.
T Consensus 792 -~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~--n~i~~iP~- 863 (1153)
T PLN03210 792 -VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI----STNISDLNLSR--TGIEEVPW- 863 (1153)
T ss_pred -cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc----ccccCEeECCC--CCCccChH-
Confidence 66788888888888888888888888887767788888888888887766632 46788888887 67888876
Q ss_pred cccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCCC--------------CCCccEEEEeCC
Q 005896 569 EIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGL--------------PSSLLELHIYGC 634 (671)
Q Consensus 569 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--------------~~~L~~L~l~~c 634 (671)
.. ..+++|+.|++++|++++.+| ..+..+++|+.+++++|+.++.++-... +|+...+.+.+|
T Consensus 864 si--~~l~~L~~L~L~~C~~L~~l~-~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC 940 (1153)
T PLN03210 864 WI--EKFSNLSFLDMNGCNNLQRVS-LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINC 940 (1153)
T ss_pred HH--hcCCCCCEEECCCCCCcCccC-cccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccc
Confidence 33 467888888888888888887 5677888888888888888876543221 233344566777
Q ss_pred hhhHH
Q 005896 635 PNLKK 639 (671)
Q Consensus 635 ~~l~~ 639 (671)
.+|.+
T Consensus 941 ~~L~~ 945 (1153)
T PLN03210 941 FNLDQ 945 (1153)
T ss_pred cCCCc
Confidence 76653
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=4.8e-32 Score=297.66 Aligned_cols=225 Identities=26% Similarity=0.356 Sum_probs=179.9
Q ss_pred CccCCccCCCCCccHHHHHHHHHHHHHhCCCCeeecC-CCcCeEEEchhHHHHHHHhhh-----cceEEeccC-----Cc
Q 005896 1 MAGGIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTAI-SDSCKFVMHDLIHDLAELVSG-----ETIFRLEEA-----NT 69 (671)
Q Consensus 1 iaeG~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~-~~~~~~~mHdlv~dl~~~~~~-----~~~~~~~~~-----~~ 69 (671)
||||||++.+++++++|+|++|+.+||++||++..+. +...+|+|||||||||.|+|+ ++..++..+ ..
T Consensus 438 iaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~ 517 (889)
T KOG4658|consen 438 IAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIP 517 (889)
T ss_pred HhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccc
Confidence 6999999977899999999999999999999999764 456899999999999999999 555554433 12
Q ss_pred ccccCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCccc-chhhhhhhhcCCCceeEEEecCCC-cc
Q 005896 70 LSRRFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYI-TRSVLSDLLPMFKMLRMLSLQGYR-IG 147 (671)
Q Consensus 70 ~~~~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~-l~ 147 (671)
....+..+|+++++.+.... ...-..+++|++|.+.+ +.. ...+..++|..++.||+|||++|. +.
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~---------n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~ 585 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQR---------NSDWLLEISGEFFRSLPLLRVLDLSGNSSLS 585 (889)
T ss_pred cccchhheeEEEEeccchhh---ccCCCCCCccceEEEee---------cchhhhhcCHHHHhhCcceEEEECCCCCccC
Confidence 22245689999999886543 34445677999999999 431 467778889999999999999885 69
Q ss_pred ccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCC
Q 005896 148 ELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKEL 227 (671)
Q Consensus 148 ~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l 227 (671)
.+|..++.|.+||||+|+++.|+.+|.++++|+.|.+||+..+..+..+|..+..|.+||+|.+.... ...-...++.+
T Consensus 586 ~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el 664 (889)
T KOG4658|consen 586 KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKEL 664 (889)
T ss_pred cCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhh
Confidence 99999999999999999999999999999999999999999997777777766779999999997664 21112224444
Q ss_pred CCCCccceeEe
Q 005896 228 NKLQTLSNFIV 238 (671)
Q Consensus 228 ~~L~~L~~~~~ 238 (671)
.+|+.|....+
T Consensus 665 ~~Le~L~~ls~ 675 (889)
T KOG4658|consen 665 ENLEHLENLSI 675 (889)
T ss_pred hcccchhhhee
Confidence 44444443333
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-31 Score=261.49 Aligned_cols=376 Identities=18% Similarity=0.213 Sum_probs=225.2
Q ss_pred cceeecCCCccccc-chhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccC-ccCCCCCCCCcccee
Q 005896 159 LRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMP-FGMKELNKLQTLSNF 236 (671)
Q Consensus 159 L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~~~ 236 (671)
-+.|++++|.+..+ +..|.++++|+.+++.+| .+..+|...+...+|+.|+|.+|. +..+. .++..++.|+.||+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDL- 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDL- 156 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhh-
Confidence 34566666666655 555666666666666666 666666644455556666666666 33332 22333444444443
Q ss_pred EecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCC
Q 005896 237 IVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHE 316 (671)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 316 (671)
+.|.+... ....+....
T Consensus 157 ------------------------------------------------------SrN~is~i---------~~~sfp~~~ 173 (873)
T KOG4194|consen 157 ------------------------------------------------------SRNLISEI---------PKPSFPAKV 173 (873)
T ss_pred ------------------------------------------------------hhchhhcc---------cCCCCCCCC
Confidence 33322111 011222234
Q ss_pred CCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceec-cccccCCCccCCCC
Q 005896 317 RIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSI-ESEVYGEGFSMPFP 394 (671)
Q Consensus 317 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~~~~~ 394 (671)
++++|++++|.++.+-..-++ .+.+|..|.|+.|.++..++ .|..+++|+.|+|..|.. +.+ +..|.| ++
T Consensus 174 ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqg------L~ 245 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQG------LP 245 (873)
T ss_pred CceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcC------ch
Confidence 555555555555555433333 56677777777777665555 677777788877777643 322 333333 56
Q ss_pred CcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEe
Q 005896 395 SLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEV 474 (671)
Q Consensus 395 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l 474 (671)
+|+.|.+..+..-..-...|.| +.++++|+|.. |++. .+. ++++-.+.+|+.|++
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~------l~kme~l~L~~-N~l~-~vn-----------------~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYG------LEKMEHLNLET-NRLQ-AVN-----------------EGWLFGLTSLEQLDL 300 (873)
T ss_pred hhhhhhhhhcCcccccCcceee------ecccceeeccc-chhh-hhh-----------------cccccccchhhhhcc
Confidence 6666655544322211222333 56666666666 4554 222 233444556666666
Q ss_pred ccCCCcccccCCCCCccC-cccCCCCCCCCeeEeecCCCCcccCCCC--CCCCcceEEEccCcCcccccccccCCCCCcC
Q 005896 475 DECKELVDICGCDKLEAL-PNDMHKLNSLRDLGIQLCPNLVSFPEEG--FPTNLTTLVIGNFKLYKTLVQWGLHRLTSLK 551 (671)
Q Consensus 475 ~~~~~~~~i~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 551 (671)
+.|. +..+ +.++..+++|++|+|++| .++.++++. .+..|++|.+++| .++.+.+..|.++++|+
T Consensus 301 S~Na----------I~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 301 SYNA----------IQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLH 368 (873)
T ss_pred chhh----------hheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhh
Confidence 6665 2333 345567778888888887 677776663 3577888888554 46777777788888888
Q ss_pred eEEecccCCCcccCC-cccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCC-CCCCCCccEE
Q 005896 552 HLWIAVSDDEAECFP-DEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPE-VGLPSSLLEL 629 (671)
Q Consensus 552 ~L~l~~~c~~~~~i~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L 629 (671)
+|+++. |.+...- ........+++|+.|.+.+ |++++||...|..++.|+.|++.+| .+.++-. +--+-.|++|
T Consensus 369 ~LdLr~--N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~L 444 (873)
T KOG4194|consen 369 KLDLRS--NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKEL 444 (873)
T ss_pred hhcCcC--CeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC-cceeecccccccchhhhh
Confidence 888887 4443332 2222235688899999998 8899998888899999999999999 4555433 3224477888
Q ss_pred EEeCChhhHHHHhhCCCCCCC
Q 005896 630 HIYGCPNLKKACKRDQGKEWP 650 (671)
Q Consensus 630 ~l~~c~~l~~~~~~~~~~~~~ 650 (671)
.+..- ++-|.|+-.|..+|-
T Consensus 445 v~nSs-sflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 445 VMNSS-SFLCDCQLKWLAQWL 464 (873)
T ss_pred hhccc-ceEEeccHHHHHHHH
Confidence 77653 366677777777774
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=9e-34 Score=267.05 Aligned_cols=262 Identities=24% Similarity=0.259 Sum_probs=173.6
Q ss_pred eEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCC
Q 005896 78 RHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLR 157 (671)
Q Consensus 78 ~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~ 157 (671)
..+-+..++... ..+...++..+.+|.+++ |. ..-.+.++..+..++.|+.++|++..+|..++.+.
T Consensus 48 ~~lils~N~l~~--l~~dl~nL~~l~vl~~~~---------n~--l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~ 114 (565)
T KOG0472|consen 48 QKLILSHNDLEV--LREDLKNLACLTVLNVHD---------NK--LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLI 114 (565)
T ss_pred hhhhhccCchhh--ccHhhhcccceeEEEecc---------ch--hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhh
Confidence 334444443322 234455666666666666 32 22233456667777777777777777777777777
Q ss_pred ccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeE
Q 005896 158 LLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFI 237 (671)
Q Consensus 158 ~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~ 237 (671)
.|+.|+.++|.+.++|++|+.+..|+.|+..+| .+..+|++++.+.+|..|++.+|. +..+|+..-+++.|++|+...
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch
Confidence 777777777777777777777777777777776 677777777777777777777777 666666654577777777666
Q ss_pred ecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCC
Q 005896 238 VGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHER 317 (671)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 317 (671)
+.....+..++.+.+|..|. +.-+.+.. ...|.++..|++|++..|.+ ..-..+....++.
T Consensus 193 N~L~tlP~~lg~l~~L~~Ly--L~~Nki~~--------lPef~gcs~L~Elh~g~N~i---------~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLY--LRRNKIRF--------LPEFPGCSLLKELHVGENQI---------EMLPAEHLKHLNS 253 (565)
T ss_pred hhhhcCChhhcchhhhHHHH--hhhccccc--------CCCCCccHHHHHHHhcccHH---------HhhHHHHhccccc
Confidence 66666655566666665542 11111111 12466666777777666655 2222334456788
Q ss_pred CcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCC
Q 005896 318 IKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKK 376 (671)
Q Consensus 318 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 376 (671)
+..|+++.|...++|+.+. .+.+|++|++++|.++..++.+|++ .|+.|.+.+|+.
T Consensus 254 l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 254 LLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 8889999999888888887 4888999999998887766688888 888888888864
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=3.9e-32 Score=256.07 Aligned_cols=440 Identities=22% Similarity=0.220 Sum_probs=221.5
Q ss_pred chhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccc
Q 005896 92 MFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRS 171 (671)
Q Consensus 92 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~ 171 (671)
.++++.++..+..|.++. |. ....+........|+.|+.+.|.+..+|++++.+..|..|+..+|++++
T Consensus 83 lp~aig~l~~l~~l~vs~---------n~--ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~s 151 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSH---------NK--LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISS 151 (565)
T ss_pred CCHHHHHHHHHHHhhccc---------ch--HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccccccc
Confidence 345555555555555555 22 2233334555566666666666666666666666666666666666666
Q ss_pred cchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCch
Q 005896 172 LPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLK 251 (671)
Q Consensus 172 lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~ 251 (671)
+|..++.+.+|..|++.+| .++.+|+..-.+++|++||...|. ++.+|++++.|.+|..|++..+.....++ +..+.
T Consensus 152 lp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~gcs 228 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLPE-FPGCS 228 (565)
T ss_pred CchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcccccCCC-CCccH
Confidence 6666666666666666665 555555554446666666666655 56666666666666666666665555554 56666
Q ss_pred hhHhcCCccEEecccCCCChhhhhhh-ccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCcc
Q 005896 252 SLNLLCDELCIAGLENVNSPQNAREA-ALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGAR 330 (671)
Q Consensus 252 ~L~~L~~~l~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 330 (671)
.|.++. ...+.-+..++ ...+++++..|+++.|++.. .+..++.+.+|.+|++++|.++.
T Consensus 229 ~L~Elh---------~g~N~i~~lpae~~~~L~~l~vLDLRdNklke----------~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 229 LLKELH---------VGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE----------VPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred HHHHHH---------hcccHHHhhHHHHhcccccceeeecccccccc----------CchHHHHhhhhhhhcccCCcccc
Confidence 665553 12222222222 33356666666666665522 22233344555666666666666
Q ss_pred CCCCCCCCCCCCccEEEEeCCCCCCCCCC---CCCCCCccEEEEe-CCCCceec--cccccCCCccCCCCCcceeeccCc
Q 005896 331 FPPWIGQHSFSEMKVLKLENCDNCAALPS---LGLMSSLKILAVK-GLKKLKSI--ESEVYGEGFSMPFPSLEILSFESL 404 (671)
Q Consensus 331 ~p~~~~~~~l~~L~~L~l~~~~~~~~~~~---l~~l~~L~~L~L~-~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~ 404 (671)
+|..++ .+ .|+.|.+.+|++.+.-.. -+.-.-|++|.=. -+..+..- +.+.........||.
T Consensus 290 Lp~sLg--nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~--------- 357 (565)
T KOG0472|consen 290 LPYSLG--NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD--------- 357 (565)
T ss_pred CCcccc--cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc---------
Confidence 666655 24 566666666654321110 0000011111000 00000000 000000000000000
Q ss_pred ccccccccccCCCCccCCCCccceeeEecCCCCccCCCC-CC-----CCccEEEEeccCCc--CccCCCCCCcc-eEEec
Q 005896 405 PEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPG-LL-----PSLETLVVRKCGKL--VVPLSSYPMLC-RLEVD 475 (671)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-~l-----~~L~~L~l~~~~~l--~~~~~~~~~L~-~L~l~ 475 (671)
. -.+.+.+.|++++ .+++ .+|. -| .-...++++.|... +..+..+..+. .+.++
T Consensus 358 ---------~------~~~i~tkiL~~s~-~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 358 ---------I------YAIITTKILDVSD-KQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred ---------h------hhhhhhhhhcccc-cccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence 0 0033556666665 4555 5552 11 11333444444221 11111111111 12222
Q ss_pred cCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCC-CCCCCcceEEEccCcCcccccccccCCCCCcCeEE
Q 005896 476 ECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEE-GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLW 554 (671)
Q Consensus 476 ~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 554 (671)
+|. +.-+|..+..+++|..|++++| .+-++|.+ +.+..|+.|+++.| ....+|.. +..+..|+.+-
T Consensus 421 nn~----------isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~-~y~lq~lEtll 487 (565)
T KOG0472|consen 421 NNK----------ISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPEC-LYELQTLETLL 487 (565)
T ss_pred cCc----------cccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHH-HhhHHHHHHHH
Confidence 222 3444555567777777777777 56666655 44556777777665 34444432 23333344444
Q ss_pred ecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCC
Q 005896 555 IAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCP 612 (671)
Q Consensus 555 l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 612 (671)
.++ +.++.++.... ....+|..||+.+ |.+..+| ..++++.+|++|++++||
T Consensus 488 as~--nqi~~vd~~~l--~nm~nL~tLDL~n-Ndlq~IP-p~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 488 ASN--NQIGSVDPSGL--KNMRNLTTLDLQN-NDLQQIP-PILGNMTNLRHLELDGNP 539 (565)
T ss_pred hcc--ccccccChHHh--hhhhhcceeccCC-CchhhCC-hhhccccceeEEEecCCc
Confidence 443 66777766212 4567777777777 7788888 788888888889988884
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=6.8e-30 Score=251.76 Aligned_cols=223 Identities=17% Similarity=0.141 Sum_probs=160.7
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCccccc-chhhhc
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL-PESKCK 178 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~ 178 (671)
+.-++|.+++ |.+ ..+...+|..+++|+.+++..|.++.+|...+...+|+.|+|.+|.|+++ .+++.-
T Consensus 78 ~~t~~Ldlsn---------Nkl-~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 78 SQTQTLDLSN---------NKL-SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred cceeeeeccc---------ccc-ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHh
Confidence 4667788888 433 56667789999999999999999999998777888899999999999988 567889
Q ss_pred cccCcEEecCCCccccccch-hhhccCcceEEeecCCccccccCcc-CCCCCCCCccceeEecCCcccccccCchhhHhc
Q 005896 179 LLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLSNFIVGKGECASGLEDLKSLNLL 256 (671)
Q Consensus 179 L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 256 (671)
++.||+|||+.| .+.++|. .+..-.++++|+|++|. ++.+-.+ |..+.+|-+|.+..+.....+.
T Consensus 148 l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~----------- 214 (873)
T KOG4194|consen 148 LPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQ----------- 214 (873)
T ss_pred Hhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCH-----------
Confidence 999999999999 8888775 36667889999999999 6666555 8888888888777666554443
Q ss_pred CCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCC
Q 005896 257 CDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIG 336 (671)
Q Consensus 257 ~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 336 (671)
..|+++++|+.|++..|.+ .......+..++.|+.|.+..|.+..+.+..+
T Consensus 215 --------------------r~Fk~L~~L~~LdLnrN~i---------rive~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 215 --------------------RSFKRLPKLESLDLNRNRI---------RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred --------------------HHhhhcchhhhhhccccce---------eeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 3466677778888877776 11112334455556666666666555554444
Q ss_pred CCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCC
Q 005896 337 QHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLK 375 (671)
Q Consensus 337 ~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~ 375 (671)
. .+.++++|+|+.|.+...-. ++-++..|+.|++++|.
T Consensus 266 y-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 266 Y-GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred e-eecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 3 46666666666666554333 56666666666666653
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=4.7e-26 Score=264.80 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=117.9
Q ss_pred CCCCCCCeeEeecCCCCcccCCC-CCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCC
Q 005896 497 HKLNSLRDLGIQLCPNLVSFPEE-GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLP 575 (671)
Q Consensus 497 ~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~ 575 (671)
...++|+.|++++|+.+..+|.. +.+++|+.|++++|+.++.+|.. ..+++|+.|++++ |..+..+|. .+
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~-c~~L~~~p~------~~ 845 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSG-CSRLRTFPD------IS 845 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCC-CCccccccc------cc
Confidence 34679999999999988888865 67899999999999999998865 3799999999999 999998887 56
Q ss_pred CCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCC-CCCCCCccEEEEeCChhhHHH
Q 005896 576 TSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPE-VGLPSSLLELHIYGCPNLKKA 640 (671)
Q Consensus 576 ~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~ 640 (671)
++|++|++++ +.++.+| .++..+++|+.|++++|+.++.+|. ...+++|+.+++++|++|+..
T Consensus 846 ~nL~~L~Ls~-n~i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 846 TNISDLNLSR-TGIEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cccCEeECCC-CCCccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 8999999999 7899999 7899999999999999999999987 344789999999999999754
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.2e-28 Score=244.70 Aligned_cols=364 Identities=18% Similarity=0.216 Sum_probs=240.8
Q ss_pred CCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCccc
Q 005896 74 FERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPF 153 (671)
Q Consensus 74 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~ 153 (671)
..-||-+.+..++..+...+.....|++++.|.+.+ ....-.|+-++.+.+|+.|.+.+|++..+...+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-----------t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL 74 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-----------TKLEQVPEELSRLQKLEHLSMAHNQLISVHGEL 74 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-----------hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhh
Confidence 344677778888777767777788888999888877 123344556788888999999999888888888
Q ss_pred CCCCccceeecCCCccc--ccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCcc-CCCCCCC
Q 005896 154 EDLRLLRFLNLADTDIR--SLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFG-MKELNKL 230 (671)
Q Consensus 154 ~~l~~L~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L 230 (671)
..|+.||.+.+..|+++ .+|..|..|..|.+|||++| .+++.|.++...+++-+|+|++|. +..||.. +-+|+.|
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDL 152 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhH
Confidence 88888999999988887 67888888999999999998 888889888888888899999888 8888876 6678888
Q ss_pred CccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhc
Q 005896 231 QTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLD 310 (671)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (671)
-.|+++.+.....+. ....+.+|++|.+++|++ ....+.
T Consensus 153 LfLDLS~NrLe~LPP--------------------------------Q~RRL~~LqtL~Ls~NPL---------~hfQLr 191 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPP--------------------------------QIRRLSMLQTLKLSNNPL---------NHFQLR 191 (1255)
T ss_pred hhhccccchhhhcCH--------------------------------HHHHHhhhhhhhcCCChh---------hHHHHh
Confidence 888776665444332 234444666666766665 233455
Q ss_pred cCCCCCCCcEEEEeccC--CccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCC
Q 005896 311 TLQPHERIKELAIKHYG--GARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEG 388 (671)
Q Consensus 311 ~l~~~~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 388 (671)
.+..+..|+.|++++.. ...+|..+. .+.+|..++++.|.+...+..+-++++|+.|+|++|... .+....
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld--~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~---- 264 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLD--DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTE---- 264 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchh--hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccH----
Confidence 55566666677776654 345677766 477788888877775433336777778888888777532 221111
Q ss_pred ccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCcc-CCCCCCC---CccEEEEeccC--CcCcc
Q 005896 389 FSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSG-ELPGLLP---SLETLVVRKCG--KLVVP 462 (671)
Q Consensus 389 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~lp~~l~---~L~~L~l~~~~--~l~~~ 462 (671)
+...+|++|+++.+. +...+..+.. +++|+.|.+.+ |+++. -+|+++. .|+.+...+|. ..+++
T Consensus 265 --~~W~~lEtLNlSrNQ-Lt~LP~avcK------L~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 265 --GEWENLETLNLSRNQ-LTVLPDAVCK------LTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred --HHHhhhhhhccccch-hccchHHHhh------hHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccccccCchh
Confidence 113455555555432 1111111111 56667776666 45542 3554433 33333344432 23555
Q ss_pred CCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCC
Q 005896 463 LSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPE 518 (671)
Q Consensus 463 ~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~ 518 (671)
+..|+.|+.|.++.|+ +..+|+.+.-++.|+.|++.+|+++...|.
T Consensus 335 lcRC~kL~kL~L~~Nr----------LiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNR----------LITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhHHHHHhcccccc----------eeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 6666777777776666 456677777777777777777776665553
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=7.4e-29 Score=257.56 Aligned_cols=456 Identities=22% Similarity=0.209 Sum_probs=305.4
Q ss_pred CccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccc
Q 005896 101 HLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLL 180 (671)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~ 180 (671)
.+..|.+.. |.. ...|-++..+.-+|++|++++|.+..+|..+..+.+|+.|+++.|.|...|.+++++.
T Consensus 22 ~~~~ln~~~---------N~~-l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~ 91 (1081)
T KOG0618|consen 22 ALQILNLRR---------NSL-LSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMR 91 (1081)
T ss_pred HHHhhhccc---------ccc-ccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhh
Confidence 366666666 332 3334556666667999999999999999999999999999999999999999999999
Q ss_pred cCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCcc
Q 005896 181 NLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDEL 260 (671)
Q Consensus 181 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l 260 (671)
+|++|+|.+| .+..+|.++..+++|++|++++|. .+.+|.-+..++.+..+....+..... ++... .+.+. +
T Consensus 92 ~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~---lg~~~-ik~~~--l 163 (1081)
T KOG0618|consen 92 NLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQR---LGQTS-IKKLD--L 163 (1081)
T ss_pred cchhheeccc-hhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhh---hcccc-chhhh--h
Confidence 9999999998 999999999999999999999999 889998888888888887655511110 11111 11111 0
Q ss_pred EEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCC
Q 005896 261 CIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSF 340 (671)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l 340 (671)
..+.....+......+.+ .|++++|.+. ...+..+.+|+.+....+....+-. .-
T Consensus 164 ------~~n~l~~~~~~~i~~l~~--~ldLr~N~~~------------~~dls~~~~l~~l~c~rn~ls~l~~-----~g 218 (1081)
T KOG0618|consen 164 ------RLNVLGGSFLIDIYNLTH--QLDLRYNEME------------VLDLSNLANLEVLHCERNQLSELEI-----SG 218 (1081)
T ss_pred ------hhhhcccchhcchhhhhe--eeecccchhh------------hhhhhhccchhhhhhhhcccceEEe-----cC
Confidence 111122222233333333 5788777761 2223334555555555555432221 34
Q ss_pred CCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCcc
Q 005896 341 SEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPV 420 (671)
Q Consensus 341 ~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 420 (671)
++|+.|+.++|.+....+ -..-.+|++++++.+.. ..+| ++.+. +++|+.+....+.- ......+..
T Consensus 219 ~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l-~~lp-~wi~~-----~~nle~l~~n~N~l-~~lp~ri~~---- 285 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNL-SNLP-EWIGA-----CANLEALNANHNRL-VALPLRISR---- 285 (1081)
T ss_pred cchheeeeccCcceeecc-ccccccceeeecchhhh-hcch-HHHHh-----cccceEecccchhH-HhhHHHHhh----
Confidence 567777777777653222 12234677777776643 3333 22221 66666666655432 111111111
Q ss_pred CCCCccceeeEecCCCCccCCC---CCCCCccEEEEeccCCcC--c-cCCCCC-CcceEEeccCCCcccccCCCCCccCc
Q 005896 421 EIFPRLQELSIAECPQLSGELP---GLLPSLETLVVRKCGKLV--V-PLSSYP-MLCRLEVDECKELVDICGCDKLEALP 493 (671)
Q Consensus 421 ~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~--~-~~~~~~-~L~~L~l~~~~~~~~i~~~~~l~~l~ 493 (671)
..+|+.|.+.. +.++ .+| ..+.+|++|++..|..-. . .+.... +|+.|+.+.+. +..+|
T Consensus 286 --~~~L~~l~~~~-nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~----------l~~lp 351 (1081)
T KOG0618|consen 286 --ITSLVSLSAAY-NELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK----------LSTLP 351 (1081)
T ss_pred --hhhHHHHHhhh-hhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc----------ccccc
Confidence 56788888887 4777 555 357788888887775421 1 111111 24444444444 44444
Q ss_pred cc-CCCCCCCCeeEeecCCCCc-ccCCCCCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCccccc
Q 005896 494 ND-MHKLNSLRDLGIQLCPNLV-SFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIG 571 (671)
Q Consensus 494 ~~-~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~ 571 (671)
.. =..++.|+.|++.+|..-. .+|......+|++|++++| .+..+|...+.++..|++|+++| |+++.+|. ..
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG--NkL~~Lp~-tv- 426 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG--NKLTTLPD-TV- 426 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc--chhhhhhH-HH-
Confidence 22 1467789999999994222 4555567789999999664 57778877889999999999998 99999996 55
Q ss_pred ccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCC-CCCC-CCccEEEEeCChh
Q 005896 572 MTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPE-VGLP-SSLLELHIYGCPN 636 (671)
Q Consensus 572 ~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~-~~L~~L~l~~c~~ 636 (671)
..++.|+.|...+ |.+.++| .+..++.|+.+|++.| .++.+-- ...+ ++|++|+++|++.
T Consensus 427 -a~~~~L~tL~ahs-N~l~~fP--e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 427 -ANLGRLHTLRAHS-NQLLSFP--ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -HhhhhhHHHhhcC-Cceeech--hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 5788899999988 8899998 7889999999999998 6666432 3456 8999999999875
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=2.2e-28 Score=254.09 Aligned_cols=441 Identities=21% Similarity=0.231 Sum_probs=273.3
Q ss_pred hcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchh
Q 005896 96 FNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPES 175 (671)
Q Consensus 96 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~ 175 (671)
..+.-+|++|++++ |. ..-.|..+..+.+|+.|+++.|.|..+|.++.++.+|++|.|.+|.++.+|.+
T Consensus 41 ~~~~v~L~~l~lsn---------n~--~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~ 109 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSN---------NQ--ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS 109 (1081)
T ss_pred hhheeeeEEeeccc---------cc--cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh
Confidence 33444577777766 22 22233345667777777777777777777777777777777777777777777
Q ss_pred hhccccCcEEecCCCccccccchhhhccCcceEEeecCC-------------------ccccccCccCCCCCCCCcccee
Q 005896 176 KCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGA-------------------KLLKEMPFGMKELNKLQTLSNF 236 (671)
Q Consensus 176 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~-------------------~~~~~~p~~l~~l~~L~~L~~~ 236 (671)
+..+++|++||+++| ....+|..+..++.+..+..++| .+.+.++.++..++. .|++.
T Consensus 110 ~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred HHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence 777777777777777 66666665555555555555554 434444555555554 44444
Q ss_pred EecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCC
Q 005896 237 IVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHE 316 (671)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 316 (671)
.+... ... +..+..|+.+.. ..+.... ---.-++|+.|+.+.|.+. ....-....
T Consensus 187 ~N~~~-~~d-ls~~~~l~~l~c--------~rn~ls~----l~~~g~~l~~L~a~~n~l~-----------~~~~~p~p~ 241 (1081)
T KOG0618|consen 187 YNEME-VLD-LSNLANLEVLHC--------ERNQLSE----LEISGPSLTALYADHNPLT-----------TLDVHPVPL 241 (1081)
T ss_pred cchhh-hhh-hhhccchhhhhh--------hhcccce----EEecCcchheeeeccCcce-----------eeccccccc
Confidence 44433 111 333333333310 0000000 0011235566666666551 122223346
Q ss_pred CCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCc
Q 005896 317 RIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSL 396 (671)
Q Consensus 317 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L 396 (671)
+|++++++++....+|+|+. .+.+|+.+...+|.++..+..+....+|+.|.+..| .++++++...+ +..|
T Consensus 242 nl~~~dis~n~l~~lp~wi~--~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~------~~sL 312 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIG--ACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEG------LKSL 312 (1081)
T ss_pred cceeeecchhhhhcchHHHH--hcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccc------ccee
Confidence 88999999999888999998 588999999999987544446777788888888877 46666655544 7888
Q ss_pred ceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCC----CCCCCccEEEEeccCCcCccC---CCCCCc
Q 005896 397 EILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP----GLLPSLETLVVRKCGKLVVPL---SSYPML 469 (671)
Q Consensus 397 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l~~~~---~~~~~L 469 (671)
++|++..+.....-...+.-. -..|+.|..+. +.+. ..| ..++.|+.|++.+|......| ..+++|
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~-----~~~l~~ln~s~-n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVL-----NASLNTLNVSS-NKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred eeeeehhccccccchHHHhhh-----hHHHHHHhhhh-cccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 888887654221111111110 12355555554 5555 455 246778888888876554444 447888
Q ss_pred ceEEeccCCCcccccCCCCCccCccc-CCCCCCCCeeEeecCCCCcccCCC-CCCCCcceEEEccCcCcccccccccCCC
Q 005896 470 CRLEVDECKELVDICGCDKLEALPND-MHKLNSLRDLGIQLCPNLVSFPEE-GFPTNLTTLVIGNFKLYKTLVQWGLHRL 547 (671)
Q Consensus 470 ~~L~l~~~~~~~~i~~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l 547 (671)
+.|++++|+ ++++|.. +.++..|++|+|++| +++.+|.. ..++.|++|.. +.|.+..+| .+..+
T Consensus 386 KVLhLsyNr----------L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a-hsN~l~~fP--e~~~l 451 (1081)
T KOG0618|consen 386 KVLHLSYNR----------LNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRA-HSNQLLSFP--ELAQL 451 (1081)
T ss_pred eeeeecccc----------cccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhh-cCCceeech--hhhhc
Confidence 888888887 6777764 478888888888888 78888754 56677888887 555667777 46888
Q ss_pred CCcCeEEecccCCCcccCCcccccccCC-CCcCeEeccCCCCCccCCccCCCCCCccCeEeecCC
Q 005896 548 TSLKHLWIAVSDDEAECFPDEEIGMTLP-TSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNC 611 (671)
Q Consensus 548 ~~L~~L~l~~~c~~~~~i~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 611 (671)
+.|+.+|++. |.++.+.- .. ..+ ++|++||++|+.+ ..+....+..++++...++.-+
T Consensus 452 ~qL~~lDlS~--N~L~~~~l-~~--~~p~p~LkyLdlSGN~~-l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 452 PQLKVLDLSC--NNLSEVTL-PE--ALPSPNLKYLDLSGNTR-LVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CcceEEeccc--chhhhhhh-hh--hCCCcccceeeccCCcc-cccchhhhHHhhhhhheecccC
Confidence 8888888884 66655443 11 355 8888888888554 3333233444444444444433
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.9e-28 Score=241.06 Aligned_cols=363 Identities=20% Similarity=0.249 Sum_probs=239.2
Q ss_pred CCceeEEEecCCCc--cccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEe
Q 005896 133 FKMLRMLSLQGYRI--GELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLD 210 (671)
Q Consensus 133 l~~L~~L~L~~~~l--~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 210 (671)
++-.|-.|+++|.+ ..+|..+..|+.++.|.|..+++..+|..++.|.+|+.|.+++| .+..+-.+++.|+.||.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHh
Confidence 45566667777765 35677777777777777777777777777777777777777777 6666666677777777777
Q ss_pred ecCCcc-ccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceE
Q 005896 211 IRGAKL-LKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALT 289 (671)
Q Consensus 211 L~~~~~-~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 289 (671)
+..|.+ ...+|..+..|..|..|+++.+.....+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~-------------------------------------------- 120 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT-------------------------------------------- 120 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcch--------------------------------------------
Confidence 776662 12366666666666666554443322221
Q ss_pred EEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEE
Q 005896 290 LEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKIL 369 (671)
Q Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 369 (671)
.+..-+++-.|++++|.+.++|..++- .++.|-.|+|++|.+...+|.+..+.+|++|
T Consensus 121 ---------------------~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 121 ---------------------NLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ---------------------hhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 111113444555566666667766654 5777778888888865555577778888888
Q ss_pred EEeCCCCceeccccccCCCccCCCCCcceeeccCcccc-cccccccCCCCccCCCCccceeeEecCCCCccCCCC---CC
Q 005896 370 AVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEW-QHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPG---LL 445 (671)
Q Consensus 370 ~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l 445 (671)
+|++|+.....-. ...++.+|++|++++.... ..++..+.+ +.+|..++++. |++. .+|. .+
T Consensus 179 ~Ls~NPL~hfQLr------QLPsmtsL~vLhms~TqRTl~N~Ptsld~------l~NL~dvDlS~-N~Lp-~vPecly~l 244 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLR------QLPSMTSLSVLHMSNTQRTLDNIPTSLDD------LHNLRDVDLSE-NNLP-IVPECLYKL 244 (1255)
T ss_pred hcCCChhhHHHHh------cCccchhhhhhhcccccchhhcCCCchhh------hhhhhhccccc-cCCC-cchHHHhhh
Confidence 8888764322111 1112555556665554322 222334444 88999999987 7787 7885 56
Q ss_pred CCccEEEEeccCCc--CccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCC-CCcccCCC-CC
Q 005896 446 PSLETLVVRKCGKL--VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCP-NLVSFPEE-GF 521 (671)
Q Consensus 446 ~~L~~L~l~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~-~l~~~~~~-~~ 521 (671)
++|+.|++++|+.. ........+|+.|+++.|+ ++.+|..+..+++|+.|.+.+|. ...-+|++ +.
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ----------Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ----------LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred hhhheeccCcCceeeeeccHHHHhhhhhhccccch----------hccchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 88899999998654 3444557888899999888 78889888899999999888884 23356655 56
Q ss_pred CCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCC
Q 005896 522 PTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLS 593 (671)
Q Consensus 522 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 593 (671)
+.+|+++..+ |+.++-+|+ ++..|+.|+.|.++. |.+-.+|. .. ..++.|+.|++..++++.-=|
T Consensus 315 L~~Levf~aa-nN~LElVPE-glcRC~kL~kL~L~~--NrLiTLPe-aI--HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 315 LIQLEVFHAA-NNKLELVPE-GLCRCVKLQKLKLDH--NRLITLPE-AI--HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhHHHHhh-ccccccCch-hhhhhHHHHHhcccc--cceeechh-hh--hhcCCcceeeccCCcCccCCC
Confidence 6777777773 445666665 477777788777774 77777776 44 567777777777777665443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=5.1e-20 Score=174.42 Aligned_cols=102 Identities=24% Similarity=0.364 Sum_probs=50.0
Q ss_pred eEEEecCCCccccC-cccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccchh-hhccCcceEEeecC
Q 005896 137 RMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRG 213 (671)
Q Consensus 137 ~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~ 213 (671)
..++|..|+|+.+| .+|+.+++||.|||++|.|+.| |..|.+|.+|-.|-+.++++|+.+|.. |++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 44445555555554 3345555555555555555554 455555555554444443355555543 44555555555555
Q ss_pred CccccccCcc-CCCCCCCCccceeEec
Q 005896 214 AKLLKEMPFG-MKELNKLQTLSNFIVG 239 (671)
Q Consensus 214 ~~~~~~~p~~-l~~l~~L~~L~~~~~~ 239 (671)
|. +..++.+ +..|++|..|.++.+.
T Consensus 150 n~-i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 150 NH-INCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hh-hcchhHHHHHHhhhcchhcccchh
Confidence 44 3333333 4445555555444443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=1.4e-16 Score=172.12 Aligned_cols=256 Identities=23% Similarity=0.262 Sum_probs=172.8
Q ss_pred CCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCC
Q 005896 283 HNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGL 362 (671)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~ 362 (671)
..-..|+++.+.+...++ .+ ..+|+.|.+.+|.++.+|. .+++|++|++++|.+.. +|.+
T Consensus 201 ~~~~~LdLs~~~LtsLP~----------~l--~~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~Lts-LP~l-- 260 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPD----------CL--PAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTS-LPVL-- 260 (788)
T ss_pred CCCcEEEcCCCCCCcCCc----------ch--hcCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCc-ccCc--
Confidence 345677888777742221 11 1468888888888887775 25788888888887654 3432
Q ss_pred CCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCC
Q 005896 363 MSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP 442 (671)
Q Consensus 363 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp 442 (671)
.++|+.|++++|. +..++.. +++|+.|++.++. +..+. .. +++|++|++++ |+++ .+|
T Consensus 261 p~sL~~L~Ls~N~-L~~Lp~l---------p~~L~~L~Ls~N~-Lt~LP----~~-----p~~L~~LdLS~-N~L~-~Lp 318 (788)
T PRK15387 261 PPGLLELSIFSNP-LTHLPAL---------PSGLCKLWIFGNQ-LTSLP----VL-----PPGLQELSVSD-NQLA-SLP 318 (788)
T ss_pred ccccceeeccCCc-hhhhhhc---------hhhcCEEECcCCc-ccccc----cc-----ccccceeECCC-Cccc-cCC
Confidence 4678888888875 3344321 4567778777753 22211 11 57888888888 5777 577
Q ss_pred CCCCCccEEEEeccCCcCccCCCC-CCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCCCC
Q 005896 443 GLLPSLETLVVRKCGKLVVPLSSY-PMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGF 521 (671)
Q Consensus 443 ~~l~~L~~L~l~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 521 (671)
....+|+.|.+++|... .++.+ ++|+.|++++|+ +..+|.. .++|+.|++++| .++.+|. .
T Consensus 319 ~lp~~L~~L~Ls~N~L~--~LP~lp~~Lq~LdLS~N~----------Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~--l 380 (788)
T PRK15387 319 ALPSELCKLWAYNNQLT--SLPTLPSGLQELSVSDNQ----------LASLPTL---PSELYKLWAYNN-RLTSLPA--L 380 (788)
T ss_pred CCcccccccccccCccc--cccccccccceEecCCCc----------cCCCCCC---Ccccceehhhcc-ccccCcc--c
Confidence 65667888888877543 23333 478888888877 4566643 356777888887 5666664 3
Q ss_pred CCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCC
Q 005896 522 PTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLT 601 (671)
Q Consensus 522 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~ 601 (671)
+.+|+.|++++|+ ++.+|.. .++|+.|++++ +.+..+|. .+.+|+.|++++ |+++.+| ..+.+++
T Consensus 381 ~~~L~~LdLs~N~-Lt~LP~l----~s~L~~LdLS~--N~LssIP~------l~~~L~~L~Ls~-NqLt~LP-~sl~~L~ 445 (788)
T PRK15387 381 PSGLKELIVSGNR-LTSLPVL----PSELKELMVSG--NRLTSLPM------LPSGLLSLSVYR-NQLTRLP-ESLIHLS 445 (788)
T ss_pred ccccceEEecCCc-ccCCCCc----ccCCCEEEccC--CcCCCCCc------chhhhhhhhhcc-CcccccC-hHHhhcc
Confidence 4678888886654 5555532 36788888887 67777776 456788888888 7788888 6677888
Q ss_pred ccCeEeecCCCC
Q 005896 602 SLQYLRIGNCPN 613 (671)
Q Consensus 602 ~L~~L~l~~c~~ 613 (671)
+|+.|++++|+.
T Consensus 446 ~L~~LdLs~N~L 457 (788)
T PRK15387 446 SETTVNLEGNPL 457 (788)
T ss_pred CCCeEECCCCCC
Confidence 888888888843
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=8.4e-17 Score=173.96 Aligned_cols=79 Identities=23% Similarity=0.249 Sum_probs=62.8
Q ss_pred CceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecC
Q 005896 134 KMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRG 213 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 213 (671)
..-.+|+++.+.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .++.+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446688999999988988775 4789999999999988853 578999999998 78888863 46788889988
Q ss_pred CccccccCc
Q 005896 214 AKLLKEMPF 222 (671)
Q Consensus 214 ~~~~~~~p~ 222 (671)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 87 566665
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.66 E-value=3.1e-18 Score=162.43 Aligned_cols=115 Identities=24% Similarity=0.288 Sum_probs=84.0
Q ss_pred hhhhhhhhcCCCceeEEEecCCCcccc-CcccCCCCccceeecCC-Ccccccc-hhhhccccCcEEecCCCcccccc-ch
Q 005896 123 RSVLSDLLPMFKMLRMLSLQGYRIGEL-PIPFEDLRLLRFLNLAD-TDIRSLP-ESKCKLLNLEILILRNCSRLIKL-PQ 198 (671)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~-n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~ 198 (671)
..+|+++|+.+++||+|||++|+|+.| |.+|.+++.|-.|-+.+ |+|+.+| ..|++|..|+.|.+.-| .+.-+ .+
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~ 158 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQD 158 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHH
Confidence 667778888888888888888888766 57787787776665555 7788887 44778888888888777 55544 34
Q ss_pred hhhccCcceEEeecCCccccccCcc-CCCCCCCCccceeEec
Q 005896 199 EMRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLSNFIVG 239 (671)
Q Consensus 199 ~i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~~~~~~ 239 (671)
.+..|++|+.|.+.+|. +..++.+ +..+.+++++.+..+.
T Consensus 159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 57788888888888877 6677764 7777777777654443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=1.1e-15 Score=166.54 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=64.4
Q ss_pred CceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecC
Q 005896 134 KMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRG 213 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 213 (671)
.+..+|+++++.++.+|..+. ++|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 456788888888888887663 578889999999988887664 58899999888 7888887654 4788888888
Q ss_pred CccccccCccC
Q 005896 214 AKLLKEMPFGM 224 (671)
Q Consensus 214 ~~~~~~~p~~l 224 (671)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 87 55666543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=8.1e-15 Score=159.83 Aligned_cols=243 Identities=21% Similarity=0.255 Sum_probs=145.1
Q ss_pred CCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCC
Q 005896 316 ERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPS 395 (671)
Q Consensus 316 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 395 (671)
.+...|++.++..+.+|..+. ++|+.|++++|.+......+ .++|++|++++|. ++.+|..+ .++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~-LtsLP~~l--------~~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP----EQITTLILDNNELKSLPENL--QGNIKTLYANSNQ-LTSIPATL--------PDT 242 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc----cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCc-cccCChhh--------hcc
Confidence 345567777766666766542 46777777777655332233 2467777777764 33443321 345
Q ss_pred cceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCCCCC-CCccEEEEeccCCcCccCCC-CCCcceEE
Q 005896 396 LEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLL-PSLETLVVRKCGKLVVPLSS-YPMLCRLE 473 (671)
Q Consensus 396 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l-~~L~~L~l~~~~~l~~~~~~-~~~L~~L~ 473 (671)
|+.|+++++... .+ |.....+|+.|++++ ++++ .+|..+ ++|+.|++++|... ..-.. .++|+.|+
T Consensus 243 L~~L~Ls~N~L~-~L--------P~~l~s~L~~L~Ls~-N~L~-~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~ 310 (754)
T PRK15370 243 IQEMELSINRIT-EL--------PERLPSALQSLDLFH-NKIS-CLPENLPEELRYLSVYDNSIR-TLPAHLPSGITHLN 310 (754)
T ss_pred ccEEECcCCccC-cC--------ChhHhCCCCEEECcC-CccC-ccccccCCCCcEEECCCCccc-cCcccchhhHHHHH
Confidence 666776665421 11 111144677888875 5777 566544 46777777776432 11111 24677777
Q ss_pred eccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcccccccccCCCCCcCeE
Q 005896 474 VDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHL 553 (671)
Q Consensus 474 l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 553 (671)
+++|. +..+|..+ .++|+.|++++| .++.+|.. .+++|+.|++++|+ ++.+|.. + .++|+.|
T Consensus 311 Ls~N~----------Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~-l~~sL~~L~Ls~N~-L~~LP~~-l--p~~L~~L 372 (754)
T PRK15370 311 VQSNS----------LTALPETL--PPGLKTLEAGEN-ALTSLPAS-LPPELQVLDVSKNQ-ITVLPET-L--PPTITTL 372 (754)
T ss_pred hcCCc----------cccCCccc--cccceeccccCC-ccccCChh-hcCcccEEECCCCC-CCcCChh-h--cCCcCEE
Confidence 77766 44555443 257788888887 46666542 45678888886664 4445432 2 3577888
Q ss_pred EecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCC----CCCCccCeEeecCCC
Q 005896 554 WIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGF----QNLTSLQYLRIGNCP 612 (671)
Q Consensus 554 ~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l----~~l~~L~~L~l~~c~ 612 (671)
++++ +.+..+|. ..+.+|+.|++++ ++++.+| ..+ ..++++..|++.+|+
T Consensus 373 dLs~--N~Lt~LP~-----~l~~sL~~LdLs~-N~L~~LP-~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 373 DVSR--NALTNLPE-----NLPAALQIMQASR-NNLVRLP-ESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ECCC--CcCCCCCH-----hHHHHHHHHhhcc-CCcccCc-hhHHHHhhcCCCccEEEeeCCC
Confidence 8887 56667776 3445788888887 5677776 322 334777788888875
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.9e-17 Score=136.48 Aligned_cols=102 Identities=26% Similarity=0.358 Sum_probs=62.8
Q ss_pred CCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEee
Q 005896 132 MFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDI 211 (671)
Q Consensus 132 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 211 (671)
.+.+++.|-|++|.++.+|..+..+.+|++|++.+|+|+++|.+|+.+++|+.|++.-| .+..+|.+|+.++.|++|||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 45566666666666666666666666666666666666666666666666666666666 66666666666666666666
Q ss_pred cCCcccc-ccCccCCCCCCCCccc
Q 005896 212 RGAKLLK-EMPFGMKELNKLQTLS 234 (671)
Q Consensus 212 ~~~~~~~-~~p~~l~~l~~L~~L~ 234 (671)
.+|.... .+|..|..|+.|+.|+
T Consensus 110 tynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred cccccccccCCcchhHHHHHHHHH
Confidence 6665221 2444444444444443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=6.9e-17 Score=135.58 Aligned_cols=152 Identities=23% Similarity=0.258 Sum_probs=119.4
Q ss_pred ccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcc
Q 005896 90 KNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDI 169 (671)
Q Consensus 90 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i 169 (671)
+...+.+.+++++..|.+++ |.. ..++ .-+..+.+|++|++.+|++.++|.+++.++.||.|+++-|++
T Consensus 23 f~~~~gLf~~s~ITrLtLSH---------NKl-~~vp-pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSH---------NKL-TVVP-PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL 91 (264)
T ss_pred Hhhcccccchhhhhhhhccc---------Cce-eecC-CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh
Confidence 34455666788888888888 432 2333 346788999999999999999999999999999999999999
Q ss_pred cccchhhhccccCcEEecCCCcccc--ccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccc
Q 005896 170 RSLPESKCKLLNLEILILRNCSRLI--KLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGL 247 (671)
Q Consensus 170 ~~lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~ 247 (671)
..+|..|+.++-|++|||.+| .+. .+|..|..++.|+.|+|++|. ...+|.+++++++||.|.+..++..+.+..+
T Consensus 92 ~~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkei 169 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEI 169 (264)
T ss_pred hcCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHH
Confidence 889999999999999999988 443 788888889999999999998 7888999999999999887766655544433
Q ss_pred cCchhhH
Q 005896 248 EDLKSLN 254 (671)
Q Consensus 248 ~~l~~L~ 254 (671)
+.+..|+
T Consensus 170 g~lt~lr 176 (264)
T KOG0617|consen 170 GDLTRLR 176 (264)
T ss_pred HHHHHHH
Confidence 3333333
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=1.9e-14 Score=159.40 Aligned_cols=150 Identities=25% Similarity=0.272 Sum_probs=111.4
Q ss_pred hhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCC--ccccCcc-cCCCCccceeecCCCc-c
Q 005896 94 EVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYR--IGELPIP-FEDLRLLRFLNLADTD-I 169 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--l~~lp~~-~~~l~~L~~L~L~~n~-i 169 (671)
+...+....|...+.+ +. ....+.. ...+.|++|-+.+|. +..++.. |..++.||+|||++|. +
T Consensus 517 ~~~~~~~~~rr~s~~~---------~~--~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMN---------NK--IEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred ccccchhheeEEEEec---------cc--hhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 3344556777777777 22 1122222 234479999999996 6777654 6889999999999774 6
Q ss_pred cccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccC
Q 005896 170 RSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLED 249 (671)
Q Consensus 170 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~ 249 (671)
.++|.+|+.|.+||+|+++++ .+..+|.++++|++|.+|++..+.....+|.....|++|++|.+...........+++
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e 663 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE 663 (889)
T ss_pred CcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh
Confidence 799999999999999999999 9999999999999999999999886666665567799999998876652222222444
Q ss_pred chhhHhc
Q 005896 250 LKSLNLL 256 (671)
Q Consensus 250 l~~L~~L 256 (671)
+..|+.|
T Consensus 664 l~~Le~L 670 (889)
T KOG4658|consen 664 LENLEHL 670 (889)
T ss_pred hhcccch
Confidence 4444444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=5.4e-13 Score=135.40 Aligned_cols=135 Identities=20% Similarity=0.143 Sum_probs=76.2
Q ss_pred hhhhcccCCccEEecccccccCCCCCcccc---hhhhhhhhcCCCceeEEEecCCCccc-------cCcccCCCCcccee
Q 005896 93 FEVFNEIGHLRTFLPLRLRIRGGSNTSYIT---RSVLSDLLPMFKMLRMLSLQGYRIGE-------LPIPFEDLRLLRFL 162 (671)
Q Consensus 93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~~L~~L~L~~~~l~~-------lp~~~~~l~~L~~L 162 (671)
...+..+++|+.|.+.+ +.+. .......+...+.++.|+++++.+.. ++..+..+++|++|
T Consensus 16 ~~~~~~l~~L~~l~l~~---------~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 16 TELLPKLLCLQVLRLEG---------NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred HHHHHHHhhccEEeecC---------CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 34455666677777776 2221 12234445666677777777766542 22345566777777
Q ss_pred ecCCCccc-ccchhhhcccc---CcEEecCCCcccc-----ccchhhhcc-CcceEEeecCCcccc----ccCccCCCCC
Q 005896 163 NLADTDIR-SLPESKCKLLN---LEILILRNCSRLI-----KLPQEMRNL-INLRHLDIRGAKLLK----EMPFGMKELN 228 (671)
Q Consensus 163 ~L~~n~i~-~lp~~i~~L~~---L~~L~L~~~~~l~-----~lp~~i~~l-~~L~~L~L~~~~~~~----~~p~~l~~l~ 228 (671)
++++|.+. ..+..+..+.+ |++|++++| .+. .+...+..+ ++|+.|++++|.+.+ .++..+..++
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 77777766 33444555554 777777777 333 223334555 677777777776432 2223344455
Q ss_pred CCCccceeE
Q 005896 229 KLQTLSNFI 237 (671)
Q Consensus 229 ~L~~L~~~~ 237 (671)
+|++|++..
T Consensus 166 ~L~~L~l~~ 174 (319)
T cd00116 166 DLKELNLAN 174 (319)
T ss_pred CcCEEECcC
Confidence 566655433
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=4.4e-13 Score=136.08 Aligned_cols=115 Identities=22% Similarity=0.196 Sum_probs=78.1
Q ss_pred hhhhhhcCCCceeEEEecCCCc-----cccCcccCCCCccceeecCCCcccc-------cchhhhccccCcEEecCCCcc
Q 005896 125 VLSDLLPMFKMLRMLSLQGYRI-----GELPIPFEDLRLLRFLNLADTDIRS-------LPESKCKLLNLEILILRNCSR 192 (671)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~l-----~~lp~~~~~l~~L~~L~L~~n~i~~-------lp~~i~~L~~L~~L~L~~~~~ 192 (671)
-....|..++.|++|+++++.+ ..++..+...++|++|+++++.+.. ++..+..+++|+.|++++|..
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3345677788899999999987 3355566777889999999887663 345577788999999998844
Q ss_pred ccccchhhhccCc---ceEEeecCCcccc----ccCccCCCC-CCCCccceeEec
Q 005896 193 LIKLPQEMRNLIN---LRHLDIRGAKLLK----EMPFGMKEL-NKLQTLSNFIVG 239 (671)
Q Consensus 193 l~~lp~~i~~l~~---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~L~~~~~~ 239 (671)
....+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++..+.
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 3355555655555 9999999887331 122334444 566666654443
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.11 E-value=1.2e-12 Score=126.13 Aligned_cols=281 Identities=18% Similarity=0.165 Sum_probs=183.7
Q ss_pred CccEEEEeCCCCCCCCC---CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCccccccc-ccccCCC
Q 005896 342 EMKVLKLENCDNCAALP---SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHW-NTNIKGN 417 (671)
Q Consensus 342 ~L~~L~l~~~~~~~~~~---~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~ 417 (671)
.|+.|.+++|.-...-+ ....+|++++|.+.+|..+++..-. .....+++|+.+.+..|..+... ...+...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~----sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL----SLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH----HHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 45666666666444333 2345677777777777644432110 11222677777777777666554 2212222
Q ss_pred CccCCCCccceeeEecCCCCcc----CCCCCCCCccEEEEeccCCcCcc-----CCCCCCcceEEeccCCCcccccCCCC
Q 005896 418 EPVEIFPRLQELSIAECPQLSG----ELPGLLPSLETLVVRKCGKLVVP-----LSSYPMLCRLEVDECKELVDICGCDK 488 (671)
Q Consensus 418 ~~~~~~~~L~~L~l~~c~~l~~----~lp~~l~~L~~L~l~~~~~l~~~-----~~~~~~L~~L~l~~~~~~~~i~~~~~ 488 (671)
+++|++|+++.|+.+++ .+.++...++.+..++|...+.. -..++-+-++++..|..+++..
T Consensus 215 -----C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~---- 285 (483)
T KOG4341|consen 215 -----CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED---- 285 (483)
T ss_pred -----hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH----
Confidence 99999999999998886 23356667888877888765321 1225556667777776554321
Q ss_pred CccCcccCCCCCCCCeeEeecCCCCcccCCC---CCCCCcceEEEccCcCcccccccc-cCCCCCcCeEEecccCCCccc
Q 005896 489 LEALPNDMHKLNSLRDLGIQLCPNLVSFPEE---GFPTNLTTLVIGNFKLYKTLVQWG-LHRLTSLKHLWIAVSDDEAEC 564 (671)
Q Consensus 489 l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~-~~~l~~L~~L~l~~~c~~~~~ 564 (671)
+-..-..+..|+.|+.++|..+++.+-. ...++|++|.+++|..++...... -.+++.|+.+++.+ |..+.+
T Consensus 286 ---~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~-~~~~~d 361 (483)
T KOG4341|consen 286 ---LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE-CGLITD 361 (483)
T ss_pred ---HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc-cceehh
Confidence 1112256888999999999877655433 456899999999999877443222 35789999999998 766654
Q ss_pred CCcccccccCCCCcCeEeccCCCCCccCCc----cCCCCCCccCeEeecCCCCCCcCCC--CCCCCCccEEEEeCChhhH
Q 005896 565 FPDEEIGMTLPTSLTHLSFCGFQNLIFLSS----MGFQNLTSLQYLRIGNCPNLTSFPE--VGLPSSLLELHIYGCPNLK 638 (671)
Q Consensus 565 i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~l~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~ 638 (671)
-.- .-.....+.||+|++++|..++.-.. ..-..+..|+.+.+++||.++.--- ....++|+.+++.+|....
T Consensus 362 ~tL-~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 362 GTL-ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhH-hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 422 11124678999999999988776521 3335678899999999998876432 3347899999999998766
Q ss_pred HH
Q 005896 639 KA 640 (671)
Q Consensus 639 ~~ 640 (671)
.-
T Consensus 441 k~ 442 (483)
T KOG4341|consen 441 KE 442 (483)
T ss_pred hh
Confidence 53
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.7e-10 Score=102.51 Aligned_cols=133 Identities=26% Similarity=0.314 Sum_probs=54.6
Q ss_pred hhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCccccc
Q 005896 93 FEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL 172 (671)
Q Consensus 93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l 172 (671)
.+.+.+..++|.|.+.+ +.+. .....-..+.+|++|+|++|.|..++ .+..+++|++|++++|.|+.+
T Consensus 12 ~~~~~n~~~~~~L~L~~---------n~I~--~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRG---------NQIS--TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-
T ss_pred ccccccccccccccccc---------cccc--cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcc
Confidence 45556777889999988 3331 12222235789999999999999884 678899999999999999999
Q ss_pred chhh-hccccCcEEecCCCccccccch--hhhccCcceEEeecCCccccccCc----cCCCCCCCCccceeEec
Q 005896 173 PESK-CKLLNLEILILRNCSRLIKLPQ--EMRNLINLRHLDIRGAKLLKEMPF----GMKELNKLQTLSNFIVG 239 (671)
Q Consensus 173 p~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~L~~~~~~~~~p~----~l~~l~~L~~L~~~~~~ 239 (671)
+..+ ..+++|+.|++++| .+..+-+ .+..+++|++|++.+|+. ...+. -+..+++|+.||.....
T Consensus 80 ~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred ccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEcc
Confidence 7655 46899999999999 7765543 367899999999999994 44442 26778889998865543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.7e-11 Score=122.65 Aligned_cols=120 Identities=28% Similarity=0.284 Sum_probs=94.2
Q ss_pred CCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEee
Q 005896 132 MFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDI 211 (671)
Q Consensus 132 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 211 (671)
.+..-...||+.|++..+|..++.+..|..+.|..|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 44555677888888888888888888888888888888888888999999999999888 8888888877665 888888
Q ss_pred cCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhH
Q 005896 212 RGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLN 254 (671)
Q Consensus 212 ~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~ 254 (671)
++|+ ++.+|.+++.+..|..|+.+.+.....+.-+..+.+|.
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr 192 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLR 192 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHH
Confidence 8888 88888888888888888877776655443333333333
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=3.9e-10 Score=100.15 Aligned_cols=107 Identities=27% Similarity=0.304 Sum_probs=40.4
Q ss_pred hcCCCceeEEEecCCCccccCcccC-CCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhh-hccCcce
Q 005896 130 LPMFKMLRMLSLQGYRIGELPIPFE-DLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEM-RNLINLR 207 (671)
Q Consensus 130 ~~~l~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~ 207 (671)
+.+...++.|+|.+|.|+.+ +.++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| .+..++..+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 34556789999999999887 4565 6899999999999999994 6889999999999999 899887766 4699999
Q ss_pred EEeecCCccccccC--ccCCCCCCCCccceeEecC
Q 005896 208 HLDIRGAKLLKEMP--FGMKELNKLQTLSNFIVGK 240 (671)
Q Consensus 208 ~L~L~~~~~~~~~p--~~l~~l~~L~~L~~~~~~~ 240 (671)
+|++++|. +..+. ..++.+++|+.|++..++.
T Consensus 92 ~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 92 ELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc
Confidence 99999999 54443 2366677788877665543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=8.1e-10 Score=115.37 Aligned_cols=107 Identities=33% Similarity=0.410 Sum_probs=90.5
Q ss_pred hcCCCceeEEEecCCCccccCcccCCCC-ccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceE
Q 005896 130 LPMFKMLRMLSLQGYRIGELPIPFEDLR-LLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRH 208 (671)
Q Consensus 130 ~~~l~~L~~L~L~~~~l~~lp~~~~~l~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 208 (671)
...++.++.|++.++.+.++|.....+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 4455789999999999999988877775 999999999999999888999999999999998 89999987778999999
Q ss_pred EeecCCccccccCccCCCCCCCCccceeEe
Q 005896 209 LDIRGAKLLKEMPFGMKELNKLQTLSNFIV 238 (671)
Q Consensus 209 L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~ 238 (671)
|++++|. +..+|..++.+..|++|.+..+
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCC
Confidence 9999998 8888887766666777765444
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=2.3e-11 Score=117.37 Aligned_cols=260 Identities=18% Similarity=0.166 Sum_probs=185.8
Q ss_pred CCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCccccccc-ccccCCCCccCCCCccceeeEecCCCCccC--
Q 005896 364 SSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHW-NTNIKGNEPVEIFPRLQELSIAECPQLSGE-- 440 (671)
Q Consensus 364 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-- 440 (671)
..|+.|.+.+|..+..-+.. .....+|+++.|.+.+|..+... ...+... +++|++|++..|..+++.
T Consensus 138 g~lk~LSlrG~r~v~~sslr----t~~~~CpnIehL~l~gc~~iTd~s~~sla~~-----C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLR----TFASNCPNIEHLALYGCKKITDSSLLSLARY-----CRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred cccccccccccccCCcchhh----HHhhhCCchhhhhhhcceeccHHHHHHHHHh-----cchhhhhhhcccchhHHHHH
Confidence 45889999999776554332 22334899999999999877765 4444444 899999999999988752
Q ss_pred --CCCCCCCccEEEEeccCCcCc-----cCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCC
Q 005896 441 --LPGLLPSLETLVVRKCGKLVV-----PLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNL 513 (671)
Q Consensus 441 --lp~~l~~L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l 513 (671)
+..+.++|++|+++.|+.+.. .+..+..++.+...+|...+ +..+-..-..+.-+..+++.+|..+
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-------le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-------LEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc-------HHHHHHHhccChHhhccchhhhccc
Confidence 336789999999999987744 23346667777666766442 2222222256677788888899777
Q ss_pred cccCCC---CCCCCcceEEEccCcCccccccccc-CCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCC
Q 005896 514 VSFPEE---GFPTNLTTLVIGNFKLYKTLVQWGL-HRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNL 589 (671)
Q Consensus 514 ~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l 589 (671)
++.... .....|++|+.++|..++..+.+.+ .+.++|+.|-+.+ |..++.... .-.....+.|+.+++.+|..+
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~-c~~fsd~~f-t~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSG-CQQFSDRGF-TMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccc-cchhhhhhh-hhhhcCChhhhhhccccccee
Confidence 765422 3568899999999999887766655 5689999999999 987766544 222246688999999998766
Q ss_pred ccCCccCC-CCCCccCeEeecCCCCCCcCCC------CCCCCCccEEEEeCChhhHHHH
Q 005896 590 IFLSSMGF-QNLTSLQYLRIGNCPNLTSFPE------VGLPSSLLELHIYGCPNLKKAC 641 (671)
Q Consensus 590 ~~l~~~~l-~~l~~L~~L~l~~c~~l~~~~~------~~~~~~L~~L~l~~c~~l~~~~ 641 (671)
..-....+ .+++.|+.|.+++|..++.-.. ..-...|+.+.+++||.+++..
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 54322222 4789999999999987776521 1125789999999999887753
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.6e-10 Score=108.08 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=68.8
Q ss_pred CceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccc-hhhhhhhhcCCCceeEEEecCCCccccCccc
Q 005896 75 ERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYIT-RSVLSDLLPMFKMLRMLSLQGYRIGELPIPF 153 (671)
Q Consensus 75 ~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~ 153 (671)
++.|.+++..........-.....|+++|.|++++ |-+. -...-.+...+++|+.|+|+.|.+....++.
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~---------NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR---------NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchh---------hhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 34455555444332211112334556666666655 2111 1112234455566666666666553322211
Q ss_pred --CCCCccceeecCCCccc--ccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCc--cCCCC
Q 005896 154 --EDLRLLRFLNLADTDIR--SLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPF--GMKEL 227 (671)
Q Consensus 154 --~~l~~L~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~--~l~~l 227 (671)
..+.+|+.|.|+.|.++ .+-.....+++|+.|+|.+|..+..-.....-+..|+.|||++|. +...+. -++.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccc
Confidence 34555666666666555 233334455566666666553222111123344556666666655 333332 24444
Q ss_pred CCCCccceeE
Q 005896 228 NKLQTLSNFI 237 (671)
Q Consensus 228 ~~L~~L~~~~ 237 (671)
+.|+.|++..
T Consensus 271 ~~L~~Lnls~ 280 (505)
T KOG3207|consen 271 PGLNQLNLSS 280 (505)
T ss_pred cchhhhhccc
Confidence 4444444333
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=4.5e-11 Score=119.65 Aligned_cols=108 Identities=30% Similarity=0.444 Sum_probs=69.8
Q ss_pred hhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceE
Q 005896 129 LLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRH 208 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 208 (671)
.+..+-.|..+.|..|.+..+|.+++++..|.+|+|+.|++..+|..++.|+ |++|-+++| +++.+|.+|+.+..|.+
T Consensus 93 ~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 93 EACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAH 170 (722)
T ss_pred HHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHH
Confidence 3455566666666666666666666666666666666666666666665544 566666666 66666666666666666
Q ss_pred EeecCCccccccCccCCCCCCCCccceeEec
Q 005896 209 LDIRGAKLLKEMPFGMKELNKLQTLSNFIVG 239 (671)
Q Consensus 209 L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~ 239 (671)
||.+.|. +..+|..++.+.+|+.|.+..+.
T Consensus 171 ld~s~ne-i~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 171 LDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred hhhhhhh-hhhchHHhhhHHHHHHHHHhhhh
Confidence 6666666 56666666666666666544433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=1.2e-09 Score=114.03 Aligned_cols=198 Identities=25% Similarity=0.308 Sum_probs=144.3
Q ss_pred eEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccc-cCcEEecCCCccccccchhhhccCcceEEeecCCc
Q 005896 137 RMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLL-NLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAK 215 (671)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 215 (671)
..+++..+.+..-+..+..++.++.|++.+|.++.+|...+.+. +|+.|++++| .+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 46788888774445566677899999999999999999888885 9999999999 999998789999999999999999
Q ss_pred cccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecC
Q 005896 216 LLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQ 295 (671)
Q Consensus 216 ~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (671)
+..+|...+.++.|+.|++..+.....+..+ .....|+++.++.|..
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~--------------------------------~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEI--------------------------------ELLSALEELDLSNNSI 221 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhh--------------------------------hhhhhhhhhhhcCCcc
Confidence 8889888778899999987766654443311 1222455666665532
Q ss_pred CCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCC
Q 005896 296 SDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLK 375 (671)
Q Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 375 (671)
......+..+.++..+.+.++....++..+. .+++++.|++++|.+.... .++.+.+++.|+++++.
T Consensus 222 ----------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~i~~i~-~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 222 ----------IELLSSLSNLKNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNS 288 (394)
T ss_pred ----------eecchhhhhcccccccccCCceeeeccchhc--cccccceeccccccccccc-cccccCccCEEeccCcc
Confidence 1122333444556666666666655566666 4777888888888865443 37788888888888876
Q ss_pred Cceecc
Q 005896 376 KLKSIE 381 (671)
Q Consensus 376 ~~~~~~ 381 (671)
.....+
T Consensus 289 ~~~~~~ 294 (394)
T COG4886 289 LSNALP 294 (394)
T ss_pred ccccch
Confidence 554443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=7.3e-10 Score=102.29 Aligned_cols=55 Identities=29% Similarity=0.334 Sum_probs=28.5
Q ss_pred cceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCc
Q 005896 159 LRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAK 215 (671)
Q Consensus 159 L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 215 (671)
|+.|||++|.|+.+-.++.-++.++.|++++| .+..+.. +..+++|++|||++|.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNL 340 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccch
Confidence 45555555555555555555555555555555 4444433 4555555555555554
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.8e-10 Score=109.68 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=105.9
Q ss_pred CCccceeeEecCCCCccC-----CCCCCCCccEEEEeccCCcC----ccCCCCCCcceEEeccCCCcccccCCCCCccCc
Q 005896 423 FPRLQELSIAECPQLSGE-----LPGLLPSLETLVVRKCGKLV----VPLSSYPMLCRLEVDECKELVDICGCDKLEALP 493 (671)
Q Consensus 423 ~~~L~~L~l~~c~~l~~~-----lp~~l~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~ 493 (671)
||+++.|+|+. +-+..+ +.+.+|+|+.|+++.|.... ..-..+++|+.|.+++|... ...+-
T Consensus 145 ~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls--------~k~V~ 215 (505)
T KOG3207|consen 145 LPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS--------WKDVQ 215 (505)
T ss_pred CCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC--------HHHHH
Confidence 55555555554 222211 11345555555555543221 11123667777777777643 12333
Q ss_pred ccCCCCCCCCeeEeecCCCCc-ccCCCCCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccc--
Q 005896 494 NDMHKLNSLRDLGIQLCPNLV-SFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEI-- 570 (671)
Q Consensus 494 ~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~-- 570 (671)
..+..+|+|+.|+++.|..+. .-.+...++.|+.|+|++|+.++.-.-...+.++.|+.|.++. ..+.++..-+.
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~--tgi~si~~~d~~s 293 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS--TGIASIAEPDVES 293 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc--cCcchhcCCCccc
Confidence 344577888888888884222 2223356788899999888887754333568889999999887 55555532111
Q ss_pred --cccCCCCcCeEeccCCCCCccCC-ccCCCCCCccCeEeecCC
Q 005896 571 --GMTLPTSLTHLSFCGFQNLIFLS-SMGFQNLTSLQYLRIGNC 611 (671)
Q Consensus 571 --~~~~~~~L~~L~l~~c~~l~~l~-~~~l~~l~~L~~L~l~~c 611 (671)
-...+++|++|++.. |++..++ ...+..+++|+.|.+..+
T Consensus 294 ~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence 124678999999999 6676654 124455677777777766
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=1.6e-09 Score=100.15 Aligned_cols=135 Identities=22% Similarity=0.220 Sum_probs=106.5
Q ss_pred CCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEee
Q 005896 132 MFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDI 211 (671)
Q Consensus 132 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 211 (671)
..+.|+.|||++|.|+.+..++.-++.+|.|++++|.|..+- .+..|++|+.|||++| .+..+-.+=.++.+.+.|.|
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 457899999999999999888888999999999999999884 4899999999999999 78877776678999999999
Q ss_pred cCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEE
Q 005896 212 RGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLE 291 (671)
Q Consensus 212 ~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (671)
++|. +..+ .++++|-+|..|++..+.+. +|... ..+++++.|+.+.+.
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie----------~ldeV--------------------~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLDLSSNQIE----------ELDEV--------------------NHIGNLPCLETLRLT 407 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheeccccccchh----------hHHHh--------------------cccccccHHHHHhhc
Confidence 9998 5555 46777778888876554322 12111 336777788888888
Q ss_pred EecCCCCCC
Q 005896 292 WGSQSDSPR 300 (671)
Q Consensus 292 ~~~~~~~~~ 300 (671)
+|++...+.
T Consensus 408 ~NPl~~~vd 416 (490)
T KOG1259|consen 408 GNPLAGSVD 416 (490)
T ss_pred CCCccccch
Confidence 887754443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=1.4e-08 Score=73.95 Aligned_cols=57 Identities=32% Similarity=0.484 Sum_probs=36.9
Q ss_pred CceeEEEecCCCccccC-cccCCCCccceeecCCCccccc-chhhhccccCcEEecCCC
Q 005896 134 KMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNC 190 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~ 190 (671)
++|++|++++|++..+| ..|..+++|++|++++|.++.+ |..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666666666666666 3456666666666666666666 345666666666666666
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=3e-08 Score=108.42 Aligned_cols=102 Identities=25% Similarity=0.361 Sum_probs=87.4
Q ss_pred ceeEEEecCCCc-cccCcccCCCCccceeecCCCccc-ccchhhhccccCcEEecCCCccccccchhhhccCcceEEeec
Q 005896 135 MLRMLSLQGYRI-GELPIPFEDLRLLRFLNLADTDIR-SLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIR 212 (671)
Q Consensus 135 ~L~~L~L~~~~l-~~lp~~~~~l~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 212 (671)
.++.|+|++|.+ +.+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 488899999998 578888999999999999999998 789999999999999999995556899999999999999999
Q ss_pred CCccccccCccCCCC-CCCCcccee
Q 005896 213 GAKLLKEMPFGMKEL-NKLQTLSNF 236 (671)
Q Consensus 213 ~~~~~~~~p~~l~~l-~~L~~L~~~ 236 (671)
+|.+.+.+|..++.+ .++..+++.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCcccccCChHHhhccccCceEEec
Confidence 999888999887653 344555443
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.61 E-value=3e-09 Score=100.74 Aligned_cols=256 Identities=17% Similarity=0.198 Sum_probs=128.5
Q ss_pred hhhcCCCceeEEEecCCCccc-----cCcccCCCCccceeecCCC---cc-cccchh-------hhccccCcEEecCCCc
Q 005896 128 DLLPMFKMLRMLSLQGYRIGE-----LPIPFEDLRLLRFLNLADT---DI-RSLPES-------KCKLLNLEILILRNCS 191 (671)
Q Consensus 128 ~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~n---~i-~~lp~~-------i~~L~~L~~L~L~~~~ 191 (671)
.....+..++.++|++|.++. +...+.+.++||..+++.- +. .++|+. +-.+++|++||||.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345667788888888887632 3345666777888877742 11 244443 2345567777777763
Q ss_pred cccccchh----hhccCcceEEeecCCccccccCcc-CCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEeccc
Q 005896 192 RLIKLPQE----MRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLE 266 (671)
Q Consensus 192 ~l~~lp~~----i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~ 266 (671)
.-..-++. +.++..|++|.|.+|. ++....+ ++. .|..|. .
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~--------------------~----------- 149 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA--------------------V----------- 149 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH--------------------H-----------
Confidence 22222222 3456666666666666 3322111 110 011111 0
Q ss_pred CCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCcc-----CCCCCCCCCCC
Q 005896 267 NVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGAR-----FPPWIGQHSFS 341 (671)
Q Consensus 267 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~ 341 (671)
......-+.|+.+....|++.... .......++..+.|+.+.+..|.+.. +...+. .++
T Consensus 150 ---------~kk~~~~~~Lrv~i~~rNrlen~g-----a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~--~~~ 213 (382)
T KOG1909|consen 150 ---------NKKAASKPKLRVFICGRNRLENGG-----ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE--HCP 213 (382)
T ss_pred ---------HhccCCCcceEEEEeecccccccc-----HHHHHHHHHhccccceEEEecccccCchhHHHHHHHH--hCC
Confidence 011334446666666666652221 11223334444566666666655321 011112 577
Q ss_pred CccEEEEeCCCCCCCC----C-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCC
Q 005896 342 EMKVLKLENCDNCAAL----P-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKG 416 (671)
Q Consensus 342 ~L~~L~l~~~~~~~~~----~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 416 (671)
+|+.|+|++|.+...- . .+..+++|+.|++++|.. +.-+...........+|+|+++.+.++.....-...+.
T Consensus 214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la- 291 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA- 291 (382)
T ss_pred cceeeecccchhhhHHHHHHHHHhcccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH-
Confidence 8888888888765322 1 466677888888888743 22221111111222367777777776654332100000
Q ss_pred CCccCCCCccceeeEecCCCC
Q 005896 417 NEPVEIFPRLQELSIAECPQL 437 (671)
Q Consensus 417 ~~~~~~~~~L~~L~l~~c~~l 437 (671)
.+..-.|.|+.|+|++| .+
T Consensus 292 -~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 292 -ACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred -HHHhcchhhHHhcCCcc-cc
Confidence 00000677777777773 44
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.60 E-value=3.4e-07 Score=91.51 Aligned_cols=160 Identities=24% Similarity=0.392 Sum_probs=86.9
Q ss_pred CCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCC
Q 005896 423 FPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSL 502 (671)
Q Consensus 423 ~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L 502 (671)
++++++|++++| .++ .+|.-.++|++|.+++|..+ +.+|..+ .++|
T Consensus 51 ~~~l~~L~Is~c-~L~-sLP~LP~sLtsL~Lsnc~nL------------------------------tsLP~~L--P~nL 96 (426)
T PRK15386 51 ARASGRLYIKDC-DIE-SLPVLPNELTEITIENCNNL------------------------------TTLPGSI--PEGL 96 (426)
T ss_pred hcCCCEEEeCCC-CCc-ccCCCCCCCcEEEccCCCCc------------------------------ccCCchh--hhhh
Confidence 567777888776 666 66643335666666665544 3333322 1355
Q ss_pred CeeEeecCCCCcccCCCCCCCCcceEEEccCc--CcccccccccCCCCCcCeEEecccCCCc--ccCCcccccccCCCCc
Q 005896 503 RDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFK--LYKTLVQWGLHRLTSLKHLWIAVSDDEA--ECFPDEEIGMTLPTSL 578 (671)
Q Consensus 503 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~l~~L~~L~l~~~c~~~--~~i~~~~~~~~~~~~L 578 (671)
+.|++++|..+..+| .+|+.|++.++. .+..+| ++|+.|.+.+ ++.. ..++. ..|++|
T Consensus 97 e~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~~~~L~~LP-------ssLk~L~I~~-~n~~~~~~lp~-----~LPsSL 158 (426)
T PRK15386 97 EKLTVCHCPEISGLP-----ESVRSLEIKGSATDSIKNVP-------NGLTSLSINS-YNPENQARIDN-----LISPSL 158 (426)
T ss_pred hheEccCcccccccc-----cccceEEeCCCCCcccccCc-------chHhheeccc-ccccccccccc-----ccCCcc
Confidence 666666665444333 345666653321 122222 2455555543 2211 12222 367788
Q ss_pred CeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCC-cCCCCCCCCCccEEEEeCChhhHH
Q 005896 579 THLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLT-SFPEVGLPSSLLELHIYGCPNLKK 639 (671)
Q Consensus 579 ~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~c~~l~~ 639 (671)
++|++++|..+. +| ..+. .+|+.|+++.|.... .++...+++++ .|++.+|.++..
T Consensus 159 k~L~Is~c~~i~-LP-~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 159 KTLSLTGCSNII-LP-EKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred cEEEecCCCccc-Cc-cccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 888888877543 33 2222 578888887763221 23444566777 888888866554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=6e-08 Score=70.55 Aligned_cols=58 Identities=36% Similarity=0.515 Sum_probs=51.8
Q ss_pred CccceeecCCCcccccc-hhhhccccCcEEecCCCccccccch-hhhccCcceEEeecCCc
Q 005896 157 RLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDIRGAK 215 (671)
Q Consensus 157 ~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~ 215 (671)
++|++|++++|+++.+| ..|..+++|++|++++| .+..+|+ .|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999996 57899999999999998 7887775 57999999999999987
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.55 E-value=4.3e-07 Score=90.79 Aligned_cols=136 Identities=26% Similarity=0.406 Sum_probs=95.6
Q ss_pred CCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcccccccccC
Q 005896 466 YPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQWGLH 545 (671)
Q Consensus 466 ~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 545 (671)
+.+++.|++++|. +.++|. -.++|++|.+++|..++.+|. ..+++|+.|++++|..+..+|.
T Consensus 51 ~~~l~~L~Is~c~----------L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP~---- 112 (426)
T PRK15386 51 ARASGRLYIKDCD----------IESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPE---- 112 (426)
T ss_pred hcCCCEEEeCCCC----------CcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccccc----
Confidence 4667777777774 467762 234799999999999988875 3578999999999987776663
Q ss_pred CCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCC-CccCeEeecCCCCCCcCCCCCCCC
Q 005896 546 RLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNL-TSLQYLRIGNCPNLTSFPEVGLPS 624 (671)
Q Consensus 546 ~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~ 624 (671)
.|+.|++.+ +....++. .|++|++|.+.+++.....+ .-..+ ++|++|.+++|..+ .+|. .+|.
T Consensus 113 ---sLe~L~L~~--n~~~~L~~------LPssLk~L~I~~~n~~~~~~--lp~~LPsSLk~L~Is~c~~i-~LP~-~LP~ 177 (426)
T PRK15386 113 ---SVRSLEIKG--SATDSIKN------VPNGLTSLSINSYNPENQAR--IDNLISPSLKTLSLTGCSNI-ILPE-KLPE 177 (426)
T ss_pred ---ccceEEeCC--CCCccccc------CcchHhheeccccccccccc--cccccCCcccEEEecCCCcc-cCcc-cccc
Confidence 577788864 44444443 67789999986544221111 00123 68999999999644 4453 4889
Q ss_pred CccEEEEeCC
Q 005896 625 SLLELHIYGC 634 (671)
Q Consensus 625 ~L~~L~l~~c 634 (671)
+|+.|+++.+
T Consensus 178 SLk~L~ls~n 187 (426)
T PRK15386 178 SLQSITLHIE 187 (426)
T ss_pred cCcEEEeccc
Confidence 9999999875
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=1.6e-08 Score=105.74 Aligned_cols=108 Identities=23% Similarity=0.237 Sum_probs=76.4
Q ss_pred hhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceE
Q 005896 129 LLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRH 208 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 208 (671)
.+..+++|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++| .+..++. +..+++|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhccC-Cccchhhhc
Confidence 36677788888888888877755467788888888888888877 45667777888888887 7776665 666788888
Q ss_pred EeecCCccccccCcc-CCCCCCCCccceeEecC
Q 005896 209 LDIRGAKLLKEMPFG-MKELNKLQTLSNFIVGK 240 (671)
Q Consensus 209 L~L~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~ 240 (671)
+++++|. +..+... ...+.+++.+.+..+..
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhccCCch
Confidence 8888887 4444432 45666666666554443
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=2.5e-07 Score=101.24 Aligned_cols=110 Identities=19% Similarity=0.275 Sum_probs=90.0
Q ss_pred ccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcc-ccCcccCCCCccceeecCCCccc-ccchhhhcc
Q 005896 102 LRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIG-ELPIPFEDLRLLRFLNLADTDIR-SLPESKCKL 179 (671)
Q Consensus 102 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~L~~n~i~-~lp~~i~~L 179 (671)
++.|.+.+ +.....+ +..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.++ .+|..+++|
T Consensus 420 v~~L~L~~---------n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDN---------QGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEECCC---------CCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 56666666 3333333 456889999999999999984 88989999999999999999998 789999999
Q ss_pred ccCcEEecCCCccccccchhhhcc-CcceEEeecCCccccccC
Q 005896 180 LNLEILILRNCSRLIKLPQEMRNL-INLRHLDIRGAKLLKEMP 221 (671)
Q Consensus 180 ~~L~~L~L~~~~~l~~lp~~i~~l-~~L~~L~L~~~~~~~~~p 221 (671)
++|++|+|++|...+.+|..++.+ .++..+++.+|..+...|
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999996667999988764 577889999887544443
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.46 E-value=2.9e-08 Score=94.22 Aligned_cols=239 Identities=19% Similarity=0.151 Sum_probs=132.0
Q ss_pred hhhhcccCCccEEecccccccCCCCCcccch---hhhhhhhcCCCceeEEEecCCCc----cccC-------cccCCCCc
Q 005896 93 FEVFNEIGHLRTFLPLRLRIRGGSNTSYITR---SVLSDLLPMFKMLRMLSLQGYRI----GELP-------IPFEDLRL 158 (671)
Q Consensus 93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~~~~l~~L~~L~L~~~~l----~~lp-------~~~~~l~~ 158 (671)
.+....+..++.+.+++ |.+.. +.....+.+-+.||..++++-.. ..+| .++...++
T Consensus 23 ~~~~~~~~s~~~l~lsg---------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSG---------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred HHHhcccCceEEEeccC---------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCc
Confidence 34455677888888888 44433 34445677778888888886532 2333 34456678
Q ss_pred cceeecCCCccc-ccc----hhhhccccCcEEecCCCccccccchh--------------hhccCcceEEeecCCccccc
Q 005896 159 LRFLNLADTDIR-SLP----ESKCKLLNLEILILRNCSRLIKLPQE--------------MRNLINLRHLDIRGAKLLKE 219 (671)
Q Consensus 159 L~~L~L~~n~i~-~lp----~~i~~L~~L~~L~L~~~~~l~~lp~~--------------i~~l~~L~~L~L~~~~~~~~ 219 (671)
|++|+||.|.+. .-+ .-+.+++.|+.|.|.+| .++..-.. ++.-++||++...+|. +..
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len 171 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LEN 171 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-ccc
Confidence 999999999876 222 34677889999999998 66533221 2344678888887777 444
Q ss_pred cCc-----cCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEec
Q 005896 220 MPF-----GMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGS 294 (671)
Q Consensus 220 ~p~-----~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (671)
.+. .+...+.|+.+.+..+++.. ... .+....+..+++|+.|+++.|.
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~--------------------------eG~-~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRP--------------------------EGV-TALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccC--------------------------chh-HHHHHHHHhCCcceeeecccch
Confidence 332 23333444444433332211 001 2333456677777777777776
Q ss_pred CCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCc-----cCCCCCCCCCCCCccEEEEeCCCCCCC----CC-CCCCCC
Q 005896 295 QSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGA-----RFPPWIGQHSFSEMKVLKLENCDNCAA----LP-SLGLMS 364 (671)
Q Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~l~~~~~~~~----~~-~l~~l~ 364 (671)
++. .........++.+++|+.++++++... .+..-+.. ..++|+.|.+.+|.+... +. .+...|
T Consensus 225 ft~-----egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~-~~p~L~vl~l~gNeIt~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 225 FTL-----EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE-SAPSLEVLELAGNEITRDAALALAACMAEKP 298 (382)
T ss_pred hhh-----HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc-cCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence 621 112223334444455666665555421 11111111 345566666666554421 11 233455
Q ss_pred CccEEEEeCCC
Q 005896 365 SLKILAVKGLK 375 (671)
Q Consensus 365 ~L~~L~L~~~~ 375 (671)
.|+.|+|++|.
T Consensus 299 dL~kLnLngN~ 309 (382)
T KOG1909|consen 299 DLEKLNLNGNR 309 (382)
T ss_pred hhHHhcCCccc
Confidence 56666665554
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.44 E-value=3.2e-08 Score=103.46 Aligned_cols=107 Identities=23% Similarity=0.338 Sum_probs=88.5
Q ss_pred cCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEe
Q 005896 131 PMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLD 210 (671)
Q Consensus 131 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 210 (671)
..+..++.+.+..|.+..+-..++.+++|++|++..|.|+.+...+..+++|++|++++| .++.+.. +..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhe
Confidence 456677777788888887656688999999999999999999665889999999999999 8888886 88899999999
Q ss_pred ecCCccccccCccCCCCCCCCccceeEecCC
Q 005896 211 IRGAKLLKEMPFGMKELNKLQTLSNFIVGKG 241 (671)
Q Consensus 211 L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~ 241 (671)
+.+|. +..++ ++..+++|+.+++..+...
T Consensus 147 l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 147 LSGNL-ISDIS-GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eccCc-chhcc-CCccchhhhcccCCcchhh
Confidence 99999 65553 4666888888877665543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.33 E-value=5.4e-07 Score=59.70 Aligned_cols=38 Identities=34% Similarity=0.437 Sum_probs=18.3
Q ss_pred ccceeecCCCcccccchhhhccccCcEEecCCCcccccc
Q 005896 158 LLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKL 196 (671)
Q Consensus 158 ~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 196 (671)
+|++|++++|+|+.+|..+++|++|++|++++| .+..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 455555555555555444555555555555555 44433
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=8.8e-07 Score=58.69 Aligned_cols=40 Identities=33% Similarity=0.466 Sum_probs=35.3
Q ss_pred CceeEEEecCCCccccCcccCCCCccceeecCCCcccccc
Q 005896 134 KMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP 173 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp 173 (671)
++|++|++++|+++.+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 5799999999999999988999999999999999999875
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.7e-08 Score=92.12 Aligned_cols=177 Identities=19% Similarity=0.219 Sum_probs=89.2
Q ss_pred CccceeeEecCCCCccC----CCCCCCCccEEEEeccCCc---CccCCCCCCcceEEeccCCCcccccCCCCCccCcccC
Q 005896 424 PRLQELSIAECPQLSGE----LPGLLPSLETLVVRKCGKL---VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDM 496 (671)
Q Consensus 424 ~~L~~L~l~~c~~l~~~----lp~~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~ 496 (671)
..|++|||++ ..++.. +-....+|+.|.+.+...- ...+..-.+|+.|+++.|..+++ ..+.--+
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-------n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-------NALQLLL 256 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-------hHHHHHH
Confidence 3699999988 455421 1134567777777765432 22234456777777777765421 1111234
Q ss_pred CCCCCCCeeEeecCCCCcccC---CCCCCCCcceEEEccCcCcc--cccccccCCCCCcCeEEecccCCCcccCCccccc
Q 005896 497 HKLNSLRDLGIQLCPNLVSFP---EEGFPTNLTTLVIGNFKLYK--TLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIG 571 (671)
Q Consensus 497 ~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~ 571 (671)
.+|+.|.+|++++|...+..- ....-++|..|+++||..-- ...+.....+|+|.+|++++ |..++.--..++
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD-~v~l~~~~~~~~- 334 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD-SVMLKNDCFQEF- 334 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc-ccccCchHHHHH-
Confidence 677778888888884333221 11233567777777765321 11111234566666666666 555443110011
Q ss_pred ccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCC
Q 005896 572 MTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNC 611 (671)
Q Consensus 572 ~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 611 (671)
..++.|++|+++.|=.+-.=..-.+...|+|.+|++.+|
T Consensus 335 -~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 -FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 234555555555553322110112334455555555555
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=6e-07 Score=82.26 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=59.0
Q ss_pred CCCceeEEEecCCCccc-----cCcccCCCCccceeecCCCc---cc-ccc-------hhhhccccCcEEecCCCccccc
Q 005896 132 MFKMLRMLSLQGYRIGE-----LPIPFEDLRLLRFLNLADTD---IR-SLP-------ESKCKLLNLEILILRNCSRLIK 195 (671)
Q Consensus 132 ~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~n~---i~-~lp-------~~i~~L~~L~~L~L~~~~~l~~ 195 (671)
.+..+..++|+||.|+. +...+.+-.+|++.+++.-- .. ++| +.+.+|++|+..+||.|..-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 36777777888877632 33455666777777777421 11 333 3456788999999999854445
Q ss_pred cchh----hhccCcceEEeecCCccccccC
Q 005896 196 LPQE----MRNLINLRHLDIRGAKLLKEMP 221 (671)
Q Consensus 196 lp~~----i~~l~~L~~L~L~~~~~~~~~p 221 (671)
.|+. |++-+.|.||.|++|. ++.+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 5543 5677889999999888 55543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=4.5e-06 Score=91.15 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=75.9
Q ss_pred CceeEEEeEeCCCCCccchhh-hcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCccc
Q 005896 75 ERVRHSSYACGGRDGKNMFEV-FNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPF 153 (671)
Q Consensus 75 ~~~~~lsl~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~ 153 (671)
+..+++.+.....-....+.. ..-+|.|++|.+.+ ......-....+.++++|+.||+++++++.+ .++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~---------~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG---------RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC---------ceecchhHHHHhhccCccceeecCCCCccCc-HHH
Confidence 345555554432222121222 22467777777777 1121222344567777777777777777776 667
Q ss_pred CCCCccceeecCCCccccc--chhhhccccCcEEecCCCccccccchh-------hhccCcceEEeecCCcc
Q 005896 154 EDLRLLRFLNLADTDIRSL--PESKCKLLNLEILILRNCSRLIKLPQE-------MRNLINLRHLDIRGAKL 216 (671)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~-------i~~l~~L~~L~L~~~~~ 216 (671)
++|++|++|.+.+-.+..- -..+.+|++|++||+|.. .....+.- -..|++||.||.+++..
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc-ccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 7777777777777666532 245667777777777765 32222211 12467777777777664
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=1.6e-06 Score=71.17 Aligned_cols=92 Identities=27% Similarity=0.297 Sum_probs=67.2
Q ss_pred hcCCCceeEEEecCCCccccCcccC-CCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceE
Q 005896 130 LPMFKMLRMLSLQGYRIGELPIPFE-DLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRH 208 (671)
Q Consensus 130 ~~~l~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 208 (671)
+.+...|...+|++|.+.++|..|. ..+..+.|+|++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 4555677777788887777776663 445777788888888888777778888888888877 77777777777777777
Q ss_pred EeecCCccccccCcc
Q 005896 209 LDIRGAKLLKEMPFG 223 (671)
Q Consensus 209 L~L~~~~~~~~~p~~ 223 (671)
|+..+|. ...+|..
T Consensus 128 Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENA-RAEIDVD 141 (177)
T ss_pred hcCCCCc-cccCcHH
Confidence 7777776 5555544
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.2e-06 Score=81.41 Aligned_cols=80 Identities=25% Similarity=0.235 Sum_probs=46.0
Q ss_pred ceeEEEecCCCccccC--ccc-CCCCccceeecCCCccc---ccchhhhccccCcEEecCCCccccccchhh-hccCcce
Q 005896 135 MLRMLSLQGYRIGELP--IPF-EDLRLLRFLNLADTDIR---SLPESKCKLLNLEILILRNCSRLIKLPQEM-RNLINLR 207 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp--~~~-~~l~~L~~L~L~~n~i~---~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~ 207 (671)
.+..|.+.++.|...- ..| ...++++.|||.+|.|+ ++-.-..+|+.|++|+|+.| .+...-... ..+.+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceE
Confidence 4445666666654432 223 35567777777777776 33344567777777777776 332111111 3456777
Q ss_pred EEeecCCc
Q 005896 208 HLDIRGAK 215 (671)
Q Consensus 208 ~L~L~~~~ 215 (671)
+|-|.+..
T Consensus 125 ~lVLNgT~ 132 (418)
T KOG2982|consen 125 VLVLNGTG 132 (418)
T ss_pred EEEEcCCC
Confidence 77777766
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5.9e-07 Score=83.47 Aligned_cols=180 Identities=19% Similarity=0.126 Sum_probs=108.0
Q ss_pred ccceeecCCCccc--ccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCcc--CCCCCCCCcc
Q 005896 158 LLRFLNLADTDIR--SLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFG--MKELNKLQTL 233 (671)
Q Consensus 158 ~L~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~--l~~l~~L~~L 233 (671)
.|++|||++..|+ ++-.-+..+.+|+-|.|.++..-..+...|++-.+|+.|+++.|..++..... +.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4888899888887 55556778888888888888444456667888888999999888755544332 5677778877
Q ss_pred ceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccC-
Q 005896 234 SNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTL- 312 (671)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l- 312 (671)
++..+....... ....+.++ ++|+.|+++++.-. .....++.+
T Consensus 266 NlsWc~l~~~~V---------------------------tv~V~his--e~l~~LNlsG~rrn-------l~~sh~~tL~ 309 (419)
T KOG2120|consen 266 NLSWCFLFTEKV---------------------------TVAVAHIS--ETLTQLNLSGYRRN-------LQKSHLSTLV 309 (419)
T ss_pred CchHhhccchhh---------------------------hHHHhhhc--hhhhhhhhhhhHhh-------hhhhHHHHHH
Confidence 766554332110 00000011 24555555544320 001112222
Q ss_pred CCCCCCcEEEEeccCCc--cCCCCCCCCCCCCccEEEEeCCCCCCC--CCCCCCCCCccEEEEeCCC
Q 005896 313 QPHERIKELAIKHYGGA--RFPPWIGQHSFSEMKVLKLENCDNCAA--LPSLGLMSSLKILAVKGLK 375 (671)
Q Consensus 313 ~~~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~L~~~~ 375 (671)
..+++|..|+++++-.- ..-..+. .++.|++|.++.|..... +-.+...|.|.+|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~--kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFF--KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHH--hcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 33566666666655311 1111222 488899999999984321 1147888999999998874
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=9.3e-06 Score=88.71 Aligned_cols=134 Identities=22% Similarity=0.215 Sum_probs=98.6
Q ss_pred ccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCc--cccCcccCCCCccceeecCCCcccccchh
Q 005896 98 EIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRI--GELPIPFEDLRLLRFLNLADTDIRSLPES 175 (671)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l--~~lp~~~~~l~~L~~L~L~~n~i~~lp~~ 175 (671)
.-.+|+.|.+.| . ...+..++...-..+|.||.|.+.+-.+ .++-.-..++++|+.||+|+++++.+ ..
T Consensus 120 sr~nL~~LdI~G--~------~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~G 190 (699)
T KOG3665|consen 120 SRQNLQHLDISG--S------ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SG 190 (699)
T ss_pred HHHhhhhcCccc--c------chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HH
Confidence 346899999988 2 2334566667778899999999998766 23334457899999999999999999 88
Q ss_pred hhccccCcEEecCCCccccccc--hhhhccCcceEEeecCCccccc--cC----ccCCCCCCCCccceeEecCC
Q 005896 176 KCKLLNLEILILRNCSRLIKLP--QEMRNLINLRHLDIRGAKLLKE--MP----FGMKELNKLQTLSNFIVGKG 241 (671)
Q Consensus 176 i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~~--~p----~~l~~l~~L~~L~~~~~~~~ 241 (671)
+++|++||+|.+++= .+..-+ .++.+|++|++||+|....... +. ..-..|++|+.||.+.+...
T Consensus 191 IS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccccHHHHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999999999999875 444333 2478999999999997763221 11 11234888999987755543
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=3e-06 Score=69.58 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=81.3
Q ss_pred hhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccch
Q 005896 95 VFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPE 174 (671)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~ 174 (671)
......+|....+++ |.. ..+++.+-.+++.++.|+|++|.+.++|..+..++.||.|++++|.+...|.
T Consensus 48 ~l~~~~el~~i~ls~---------N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 48 MLSKGYELTKISLSD---------NGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPR 117 (177)
T ss_pred HHhCCceEEEEeccc---------chh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchH
Confidence 344556777778877 332 5677777888899999999999999999999999999999999999999999
Q ss_pred hhhccccCcEEecCCCccccccchhh
Q 005896 175 SKCKLLNLEILILRNCSRLIKLPQEM 200 (671)
Q Consensus 175 ~i~~L~~L~~L~L~~~~~l~~lp~~i 200 (671)
.|..|.+|-+||.-+| -...+|-.+
T Consensus 118 vi~~L~~l~~Lds~~n-a~~eid~dl 142 (177)
T KOG4579|consen 118 VIAPLIKLDMLDSPEN-ARAEIDVDL 142 (177)
T ss_pred HHHHHHhHHHhcCCCC-ccccCcHHH
Confidence 9999999999999998 777777664
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=5.2e-07 Score=93.69 Aligned_cols=103 Identities=23% Similarity=0.221 Sum_probs=72.8
Q ss_pred ceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhh-ccCcceEEeecC
Q 005896 135 MLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMR-NLINLRHLDIRG 213 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~L~~ 213 (671)
.|.+-+.+.|.+..+..++.-++.|+.|+|++|+++.. +.+..|++|++|||++| .+..+|. ++ .--+|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~-l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYN-CLRHVPQ-LSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccc-hhccccc-cchhhhhheeeeecc
Confidence 45555666666666666677777888888888888876 37778888888888888 7777776 32 112388888888
Q ss_pred CccccccCccCCCCCCCCccceeEecCCc
Q 005896 214 AKLLKEMPFGMKELNKLQTLSNFIVGKGE 242 (671)
Q Consensus 214 ~~~~~~~p~~l~~l~~L~~L~~~~~~~~~ 242 (671)
|. +..+ .++.+|++|+.||+..+-...
T Consensus 242 N~-l~tL-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 242 NA-LTTL-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred cH-HHhh-hhHHhhhhhhccchhHhhhhc
Confidence 87 5555 367888888888876665443
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=7.2e-07 Score=92.66 Aligned_cols=113 Identities=23% Similarity=0.231 Sum_probs=83.8
Q ss_pred hhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchh-hhccccCcEEecCCCccccccchhhh
Q 005896 123 RSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPES-KCKLLNLEILILRNCSRLIKLPQEMR 201 (671)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~ 201 (671)
...+...+.-++.|+.|+|++|++.+.- .+..+.+|+.|||++|.++.+|.- ...++ |+.|.+++| .++++-. |.
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~g-ie 251 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLRG-IE 251 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhhh-HH
Confidence 3455667778899999999999988773 778899999999999999988742 34444 999999998 7777765 88
Q ss_pred ccCcceEEeecCCccccccC-ccCCCCCCCCccceeEec
Q 005896 202 NLINLRHLDIRGAKLLKEMP-FGMKELNKLQTLSNFIVG 239 (671)
Q Consensus 202 ~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~~~~~~ 239 (671)
+|++|+.||+++|-+.+.-- .-++.|..|+.|++..+.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99999999999887332211 115556667777655443
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=5.8e-06 Score=77.04 Aligned_cols=85 Identities=24% Similarity=0.270 Sum_probs=61.3
Q ss_pred hcCCCceeEEEecCCCccccC---cccCCCCccceeecCCCcccccchhh-hccccCcEEecCCCcccc--ccchhhhcc
Q 005896 130 LPMFKMLRMLSLQGYRIGELP---IPFEDLRLLRFLNLADTDIRSLPESK-CKLLNLEILILRNCSRLI--KLPQEMRNL 203 (671)
Q Consensus 130 ~~~l~~L~~L~L~~~~l~~lp---~~~~~l~~L~~L~L~~n~i~~lp~~i-~~L~~L~~L~L~~~~~l~--~lp~~i~~l 203 (671)
-...+.++.|||.+|.|+... ..+.+|++|++|+|+.|.+..-..+. ..+.+|++|-|.++ .+. .....+..+
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDL 145 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcc
Confidence 356778899999999886543 33478899999999998776322222 46778999999887 443 444456778
Q ss_pred CcceEEeecCCc
Q 005896 204 INLRHLDIRGAK 215 (671)
Q Consensus 204 ~~L~~L~L~~~~ 215 (671)
++++.|+++.|.
T Consensus 146 P~vtelHmS~N~ 157 (418)
T KOG2982|consen 146 PKVTELHMSDNS 157 (418)
T ss_pred hhhhhhhhccch
Confidence 888888888885
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=8.3e-05 Score=65.68 Aligned_cols=104 Identities=22% Similarity=0.254 Sum_probs=78.0
Q ss_pred CCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhh-hccccCcEEecCCCccccccch--hhhccCcceEE
Q 005896 133 FKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESK-CKLLNLEILILRNCSRLIKLPQ--EMRNLINLRHL 209 (671)
Q Consensus 133 l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L 209 (671)
......+||++|.+..+ ..|..+..|..|.|.+|+|+.|-..+ .-+++|..|.|.+| .+.++-+ .+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 44667889999988776 45678899999999999999884444 45667999999998 6765543 26788999999
Q ss_pred eecCCccccccC----ccCCCCCCCCccceeEec
Q 005896 210 DIRGAKLLKEMP----FGMKELNKLQTLSNFIVG 239 (671)
Q Consensus 210 ~L~~~~~~~~~p----~~l~~l~~L~~L~~~~~~ 239 (671)
.+-+|. ...-+ .-+.++++|++||+....
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 999888 43333 126788889998865443
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.41 E-value=7.1e-06 Score=88.54 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=22.0
Q ss_pred CCCccEEEEeCCCCCCC---CCCCCCCCCccEEEEeCC
Q 005896 340 FSEMKVLKLENCDNCAA---LPSLGLMSSLKILAVKGL 374 (671)
Q Consensus 340 l~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~L~~~ 374 (671)
++.|+.|.+.+|..... .+.....+.|+.|++++|
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 56777777777765443 234556677777777663
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.37 E-value=8.1e-06 Score=88.11 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=7.5
Q ss_pred CCCCccEEEEeC
Q 005896 339 SFSEMKVLKLEN 350 (671)
Q Consensus 339 ~l~~L~~L~l~~ 350 (671)
.++.|+.|++++
T Consensus 212 ~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 212 KCPNLEELDLSG 223 (482)
T ss_pred hCchhheecccC
Confidence 356666666665
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=1.1e-05 Score=74.38 Aligned_cols=100 Identities=25% Similarity=0.307 Sum_probs=60.3
Q ss_pred CCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccch--hhhccCcceEEe
Q 005896 133 FKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQ--EMRNLINLRHLD 210 (671)
Q Consensus 133 l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~ 210 (671)
+.+.+.|+..||.+.++ .....|+.|++|.|+-|+|+++ +.+..|++|+.|+|+.| .+..+-+ .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 45566666666666655 2335666677777777776666 44666777777777666 5554433 245667777777
Q ss_pred ecCCccccccCcc-----CCCCCCCCccce
Q 005896 211 IRGAKLLKEMPFG-----MKELNKLQTLSN 235 (671)
Q Consensus 211 L~~~~~~~~~p~~-----l~~l~~L~~L~~ 235 (671)
|..|.-.+.-+.. +..|++|+.||.
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccC
Confidence 7666644444322 455666666654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.32 E-value=9.1e-05 Score=68.43 Aligned_cols=109 Identities=26% Similarity=0.293 Sum_probs=68.2
Q ss_pred hhcCCCceeEEEecCCCccccCcccCCCCccceeecCCC--ccc-ccchhhhccccCcEEecCCCccccc---cchhhhc
Q 005896 129 LLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADT--DIR-SLPESKCKLLNLEILILRNCSRLIK---LPQEMRN 202 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~ 202 (671)
.+..+..|+.|++.+..++.+ ..+-.|++|++|.++.| ++. .++.....+++|++|++++| .+.. ++. +..
T Consensus 38 l~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKE 114 (260)
T ss_pred ccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhh
Confidence 344556666666666666554 34557778888888888 544 45544556688888888887 5553 333 567
Q ss_pred cCcceEEeecCCccccccCc----cCCCCCCCCccceeEecCC
Q 005896 203 LINLRHLDIRGAKLLKEMPF----GMKELNKLQTLSNFIVGKG 241 (671)
Q Consensus 203 l~~L~~L~L~~~~~~~~~p~----~l~~l~~L~~L~~~~~~~~ 241 (671)
+.+|..|++.+|... .+-. -+.-+++|..|+.......
T Consensus 115 l~nL~~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT-NLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hcchhhhhcccCCcc-ccccHHHHHHHHhhhhccccccccCCc
Confidence 777888888887732 2221 1445667777766554433
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00023 Score=62.97 Aligned_cols=84 Identities=26% Similarity=0.294 Sum_probs=48.5
Q ss_pred hcCCCceeEEEecCCCccccCcccC-CCCccceeecCCCccccc--chhhhccccCcEEecCCCccccccchh----hhc
Q 005896 130 LPMFKMLRMLSLQGYRIGELPIPFE-DLRLLRFLNLADTDIRSL--PESKCKLLNLEILILRNCSRLIKLPQE----MRN 202 (671)
Q Consensus 130 ~~~l~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~L~~n~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~----i~~ 202 (671)
|..++.|.+|.|.+|.|..+-..+. -+++|..|.|.+|+|..+ -..+..++.|++|.+-+| .+...+.. +.+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEEEe
Confidence 5566666666666666666544442 344566666666666644 133555666666666666 44443321 456
Q ss_pred cCcceEEeecCC
Q 005896 203 LINLRHLDIRGA 214 (671)
Q Consensus 203 l~~L~~L~L~~~ 214 (671)
+++|++||..+-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 667777766543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=5e-05 Score=70.25 Aligned_cols=81 Identities=31% Similarity=0.325 Sum_probs=68.0
Q ss_pred hhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccc--hhhhccccCcEEecCCCccccccchh-----hh
Q 005896 129 LLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP--ESKCKLLNLEILILRNCSRLIKLPQE-----MR 201 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~-----i~ 201 (671)
...+|+.|+||.|+-|.|+.+ ..+..+++|+.|.|..|.|..+- .-+.+|++|++|.|..|.-.+.-+.. +.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 578999999999999999988 56789999999999999999773 45779999999999998665555432 56
Q ss_pred ccCcceEEe
Q 005896 202 NLINLRHLD 210 (671)
Q Consensus 202 ~l~~L~~L~ 210 (671)
.|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 788888886
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.72 E-value=0.0016 Score=60.45 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=76.2
Q ss_pred hhhhcccCCccEEecccccccCCCCCcccchhhhh---hhhcCCCceeEEEecCCCcc----c-------cCcccCCCCc
Q 005896 93 FEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLS---DLLPMFKMLRMLSLQGYRIG----E-------LPIPFEDLRL 158 (671)
Q Consensus 93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~L~~~~l~----~-------lp~~~~~l~~ 158 (671)
...+..+..+..+.+++ |.+..+... ..+..-++|++.+++.-..+ . +..++-.+++
T Consensus 23 ~eel~~~d~~~evdLSG---------NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~ 93 (388)
T COG5238 23 VEELEMMDELVEVDLSG---------NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPR 93 (388)
T ss_pred HHHHHhhcceeEEeccC---------CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCc
Confidence 45555678888888888 666554433 34556678888887764221 2 2345668899
Q ss_pred cceeecCCCccc-ccch----hhhccccCcEEecCCCccccccchh-hh-------------ccCcceEEeecCCc
Q 005896 159 LRFLNLADTDIR-SLPE----SKCKLLNLEILILRNCSRLIKLPQE-MR-------------NLINLRHLDIRGAK 215 (671)
Q Consensus 159 L~~L~L~~n~i~-~lp~----~i~~L~~L~~L~L~~~~~l~~lp~~-i~-------------~l~~L~~L~L~~~~ 215 (671)
|+..+||.|.+. ..|. -|+.-++|.+|.+++| .++.+..+ |+ .-+.|++.....|.
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 999999999887 4443 3667789999999998 66644321 22 34667777777766
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.68 E-value=0.0049 Score=52.64 Aligned_cols=119 Identities=13% Similarity=0.265 Sum_probs=56.9
Q ss_pred hhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCccccc
Q 005896 94 EVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL 172 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l 172 (671)
..|.++++|+.+.+.. . ...+...+|..++.|+.+.+..+ +..++ ..|..+..|+.+.+.. .+..+
T Consensus 6 ~~F~~~~~l~~i~~~~---------~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i 72 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN---------T--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSI 72 (129)
T ss_dssp TTTTT-TT--EEEETS---------T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE
T ss_pred HHHhCCCCCCEEEECC---------C--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccc
Confidence 4566777777777665 1 24566667777877888887764 66665 4566776788887765 55555
Q ss_pred c-hhhhccccCcEEecCCCccccccchh-hhccCcceEEeecCCccccccCcc-CCCCCCC
Q 005896 173 P-ESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRGAKLLKEMPFG-MKELNKL 230 (671)
Q Consensus 173 p-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L 230 (671)
+ ..+..+++|+.+++..+ +..++.. +.+. +|+.+.+..+ ...++.. +.+.++|
T Consensus 73 ~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 73 GDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 3 44666778887777653 4444433 4555 7777776542 3344433 4444443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.59 E-value=0.00087 Score=36.76 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=7.8
Q ss_pred cceeecCCCcccccchhh
Q 005896 159 LRFLNLADTDIRSLPESK 176 (671)
Q Consensus 159 L~~L~L~~n~i~~lp~~i 176 (671)
|++|+|++|.++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444433
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.00043 Score=61.37 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=65.7
Q ss_pred CcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCcc
Q 005896 524 NLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSL 603 (671)
Q Consensus 524 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L 603 (671)
.++.++-+++.... ..-..+.+++.++.|.+.+ |..+.++.- +......++|+.|+|++|+++++-...++..+++|
T Consensus 102 ~IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~-ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY-EGLEHLRDLRSIKSLSLAN-CKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHH-HHHHHHhccchhhhheecc-ccchhhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 35566665544332 2222467788888888888 888877765 44445789999999999999998877788889999
Q ss_pred CeEeecCCCCCCc
Q 005896 604 QYLRIGNCPNLTS 616 (671)
Q Consensus 604 ~~L~l~~c~~l~~ 616 (671)
+.|.+.+-+.+..
T Consensus 179 r~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 179 RRLHLYDLPYVAN 191 (221)
T ss_pred HHHHhcCchhhhc
Confidence 9999888755443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.0028 Score=58.83 Aligned_cols=89 Identities=25% Similarity=0.285 Sum_probs=60.4
Q ss_pred cCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCC--ccccccchhhhccCcceEEeecCCccccccC--ccC
Q 005896 149 LPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNC--SRLIKLPQEMRNLINLRHLDIRGAKLLKEMP--FGM 224 (671)
Q Consensus 149 lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p--~~l 224 (671)
+......+..|+.|++.+..++++ ..+-.|++|+.|.++.| +....++.-...+++|++|++++|+ +..+. ..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchh
Confidence 333345566777777777777655 34557899999999998 4445566555667999999999998 43321 125
Q ss_pred CCCCCCCccceeEec
Q 005896 225 KELNKLQTLSNFIVG 239 (671)
Q Consensus 225 ~~l~~L~~L~~~~~~ 239 (671)
.++.+|..|+++.+.
T Consensus 113 ~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 113 KELENLKSLDLFNCS 127 (260)
T ss_pred hhhcchhhhhcccCC
Confidence 556666677765554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.0048 Score=33.80 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.4
Q ss_pred ceeEEEecCCCccccCcccCCC
Q 005896 135 MLRMLSLQGYRIGELPIPFEDL 156 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l 156 (671)
+|++|++++|+++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999877654
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.61 E-value=0.031 Score=47.63 Aligned_cols=103 Identities=17% Similarity=0.291 Sum_probs=62.9
Q ss_pred hhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCccccccch-hhh
Q 005896 125 VLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKLPQ-EMR 201 (671)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~ 201 (671)
+...+|.++++|+.+.+.. .+..++ .+|..+.+|+.+.+..+ +..++ ..+.++.+|+.+.+.. .+..++. .+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccc
Confidence 4456799999999999985 577776 56888889999999885 87774 5688888999999975 3444444 467
Q ss_pred ccCcceEEeecCCccccccCcc-CCCCCCCCccc
Q 005896 202 NLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLS 234 (671)
Q Consensus 202 ~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~ 234 (671)
.+++|+.+++..+ +..++.. +.+. +|+.+.
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEE
Confidence 7999999999764 3455544 5555 666664
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.50 E-value=0.00078 Score=60.93 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=68.9
Q ss_pred hhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceE
Q 005896 129 LLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRH 208 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 208 (671)
-+..++..++||++.|++-.+-..|+-++.|..|+++.|.|..+|..++.+..++.+++..| .....|.++++++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 34566777888888887766666677777888888888888888888888888888888777 77788888888888888
Q ss_pred EeecCCccc
Q 005896 209 LDIRGAKLL 217 (671)
Q Consensus 209 L~L~~~~~~ 217 (671)
+++.++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888877743
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.80 E-value=0.016 Score=29.35 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=3.0
Q ss_pred ceeecCCCcc
Q 005896 160 RFLNLADTDI 169 (671)
Q Consensus 160 ~~L~L~~n~i 169 (671)
+.|++++|++
T Consensus 4 ~~L~l~~n~L 13 (17)
T PF13504_consen 4 RTLDLSNNRL 13 (17)
T ss_dssp SEEEETSS--
T ss_pred CEEECCCCCC
Confidence 3333333333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.58 E-value=0.002 Score=58.41 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=81.1
Q ss_pred ccccC-cccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccC
Q 005896 146 IGELP-IPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGM 224 (671)
Q Consensus 146 l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l 224 (671)
++++| ..+.....-++||++.|++-.+-..+..++.|..||++.| .+..+|.+++.+..++++++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 45566 5577888999999999999888888999999999999998 899999999999999999999888 88999999
Q ss_pred CCCCCCCccceeEec
Q 005896 225 KELNKLQTLSNFIVG 239 (671)
Q Consensus 225 ~~l~~L~~L~~~~~~ 239 (671)
+++++++.++.-.+.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 999999999765544
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.21 E-value=0.031 Score=28.28 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=11.2
Q ss_pred CceeEEEecCCCccccC
Q 005896 134 KMLRMLSLQGYRIGELP 150 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp 150 (671)
++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999988876
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=0.016 Score=51.68 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=42.6
Q ss_pred CCCCCCCCeeEeecCCCCcccCCC---CCCCCcceEEEccCcCcccccccccCCCCCcCeEEecc
Q 005896 496 MHKLNSLRDLGIQLCPNLVSFPEE---GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAV 557 (671)
Q Consensus 496 ~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 557 (671)
+..+++++.|.+.+|..+.+..-. ...++|+.|+|++|..+++..-..+..+++|+.|.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 346667777777887666544321 35578888888888888766555567777887777765
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.46 E-value=0.1 Score=29.87 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=10.4
Q ss_pred CccceeecCCCcccccchh
Q 005896 157 RLLRFLNLADTDIRSLPES 175 (671)
Q Consensus 157 ~~L~~L~L~~n~i~~lp~~ 175 (671)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555555555555543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.46 E-value=0.1 Score=29.87 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=10.4
Q ss_pred CccceeecCCCcccccchh
Q 005896 157 RLLRFLNLADTDIRSLPES 175 (671)
Q Consensus 157 ~~L~~L~L~~n~i~~lp~~ 175 (671)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555555555555543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.86 E-value=0.27 Score=28.03 Aligned_cols=20 Identities=45% Similarity=0.461 Sum_probs=12.7
Q ss_pred cccCcEEecCCCccccccchh
Q 005896 179 LLNLEILILRNCSRLIKLPQE 199 (671)
Q Consensus 179 L~~L~~L~L~~~~~l~~lp~~ 199 (671)
|++|++|+|++| .+..+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 356666666666 66666654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.86 E-value=0.27 Score=28.03 Aligned_cols=20 Identities=45% Similarity=0.461 Sum_probs=12.7
Q ss_pred cccCcEEecCCCccccccchh
Q 005896 179 LLNLEILILRNCSRLIKLPQE 199 (671)
Q Consensus 179 L~~L~~L~L~~~~~l~~lp~~ 199 (671)
|++|++|+|++| .+..+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 356666666666 66666654
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.82 E-value=0.7 Score=26.34 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=7.1
Q ss_pred CccCeEeecCCCCCC
Q 005896 601 TSLQYLRIGNCPNLT 615 (671)
Q Consensus 601 ~~L~~L~l~~c~~l~ 615 (671)
++|++|++++|+.++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 344455555554443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.26 E-value=1.3 Score=25.35 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=9.3
Q ss_pred CccceeecCCCccccc
Q 005896 157 RLLRFLNLADTDIRSL 172 (671)
Q Consensus 157 ~~L~~L~L~~n~i~~l 172 (671)
++|++|+|++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665544
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.39 E-value=1.3 Score=25.17 Aligned_cols=17 Identities=41% Similarity=0.686 Sum_probs=9.5
Q ss_pred ccceeecCCCcccccch
Q 005896 158 LLRFLNLADTDIRSLPE 174 (671)
Q Consensus 158 ~L~~L~L~~n~i~~lp~ 174 (671)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555554
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.42 E-value=1 Score=25.03 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=4.7
Q ss_pred ccceeecCCCccc
Q 005896 158 LLRFLNLADTDIR 170 (671)
Q Consensus 158 ~L~~L~L~~n~i~ 170 (671)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444433
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=60.15 E-value=0.38 Score=50.85 Aligned_cols=66 Identities=26% Similarity=0.190 Sum_probs=30.5
Q ss_pred hhhhhhcCCCceeEEEecCCCcccc-----CcccCCC-CccceeecCCCcccc-----cchhhhccccCcEEecCCC
Q 005896 125 VLSDLLPMFKMLRMLSLQGYRIGEL-----PIPFEDL-RLLRFLNLADTDIRS-----LPESKCKLLNLEILILRNC 190 (671)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~l~~l-----p~~~~~l-~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~ 190 (671)
....++.....|..|++++|.++.. -..+... ..|++|++..|.++. +...+.....++.+|++.|
T Consensus 106 ~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 106 ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLN 182 (478)
T ss_pred HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhc
Confidence 3444555555555566665555321 1122221 344555555555441 2333444555555555555
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.70 E-value=7 Score=22.70 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=8.3
Q ss_pred CccceeecCCCccc
Q 005896 157 RLLRFLNLADTDIR 170 (671)
Q Consensus 157 ~~L~~L~L~~n~i~ 170 (671)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.34 E-value=10 Score=39.87 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=16.5
Q ss_pred CCCcceEEEccCcCcc--cccccccCCCCCcCeEEecc
Q 005896 522 PTNLTTLVIGNFKLYK--TLVQWGLHRLTSLKHLWIAV 557 (671)
Q Consensus 522 ~~~L~~L~l~~~~~l~--~~~~~~~~~l~~L~~L~l~~ 557 (671)
.+.+..+.+++|+... .+.. .....|+|+.|+|++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~ss-lsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSS-LSQIAPKLKTLDLSH 253 (585)
T ss_pred CcceeeeecccchhhchhhhhH-HHHhcchhheeeccc
Confidence 3456666665554322 1111 123355666666665
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.09 E-value=5.6 Score=50.20 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=17.6
Q ss_pred ccCCCCCccCCccCCCCCCccCeEeecCC
Q 005896 583 FCGFQNLIFLSSMGFQNLTSLQYLRIGNC 611 (671)
Q Consensus 583 l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 611 (671)
|++ |+|+.|+...|..+++|+.|+|++|
T Consensus 2 LSn-N~LstLp~g~F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 2 ISN-NKISTIEEGICANLCNLSEIDLSGN 29 (2740)
T ss_pred CCC-CcCCccChHHhccCCCceEEEeeCC
Confidence 444 5666666556666666666666665
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.59 E-value=9.2 Score=40.22 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=15.9
Q ss_pred CCCcEEEEeccCCccCCC--CCCCCCCCCccEEEEeCC
Q 005896 316 ERIKELAIKHYGGARFPP--WIGQHSFSEMKVLKLENC 351 (671)
Q Consensus 316 ~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~l~~~ 351 (671)
+.+..+.+++|....+.. .+.. ..|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq-~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQ-IAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHH-hcchhheeecccc
Confidence 445555555555332211 1111 3455555666555
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=36.74 E-value=71 Score=20.86 Aligned_cols=32 Identities=28% Similarity=0.236 Sum_probs=15.4
Q ss_pred CccCeEeecCCCCCCcCCCCCCCCCccEEEEeC
Q 005896 601 TSLQYLRIGNCPNLTSFPEVGLPSSLLELHIYG 633 (671)
Q Consensus 601 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 633 (671)
+++++|.+.++ -=..+....+|++|+.|.+.+
T Consensus 12 ~~l~~L~~g~~-fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSS-FNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCc-cCccCCCCccCCCceEEEeeC
Confidence 34555555322 222222344566777776643
No 93
>PF14162 YozD: YozD-like protein
Probab=34.68 E-value=51 Score=22.16 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHhCCCCeeec
Q 005896 14 RLEDWGSKCFHDLVSRSIFQQTA 36 (671)
Q Consensus 14 ~~~~~~~~~~~~L~~~~ll~~~~ 36 (671)
..|++|+=++.+|+.||.+-..+
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcHH
Confidence 46899999999999999986543
No 94
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=25.03 E-value=2.5e+02 Score=22.25 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCCeeecCCCcCeEEEchh
Q 005896 15 LEDWGSKCFHDLVSRSIFQQTAISDSCKFVMHDL 48 (671)
Q Consensus 15 ~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~mHdl 48 (671)
-.+.|.+|+++|++++++...+.+..+.|.+-|-
T Consensus 44 ny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~K 77 (95)
T COG3432 44 NYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEK 77 (95)
T ss_pred CHHHHHHHHHHHHhCCCEEeccCCccceEEEChh
Confidence 3578999999999999887776344445666543
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=24.03 E-value=6.4 Score=41.80 Aligned_cols=115 Identities=23% Similarity=0.145 Sum_probs=78.3
Q ss_pred hhhhcCCCceeEEEecCCCccc-----cCccc----CCCCccceeecCCCccccc-----chhhhcccc-CcEEecCCCc
Q 005896 127 SDLLPMFKMLRMLSLQGYRIGE-----LPIPF----EDLRLLRFLNLADTDIRSL-----PESKCKLLN-LEILILRNCS 191 (671)
Q Consensus 127 ~~~~~~l~~L~~L~L~~~~l~~-----lp~~~----~~l~~L~~L~L~~n~i~~l-----p~~i~~L~~-L~~L~L~~~~ 191 (671)
...+.....++.++++.|.+.. ++..+ ....++++|.++++.++.- -..+...+. ++.|+++.|
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n- 243 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN- 243 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-
Confidence 3445558999999999997632 23333 3578899999999988721 233455566 677999988
Q ss_pred ccc-----ccchhhhcc-CcceEEeecCCccccc----cCccCCCCCCCCccceeEecCCc
Q 005896 192 RLI-----KLPQEMRNL-INLRHLDIRGAKLLKE----MPFGMKELNKLQTLSNFIVGKGE 242 (671)
Q Consensus 192 ~l~-----~lp~~i~~l-~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~~~~~~~~~ 242 (671)
.+. .+.+.+..+ ..+++++++.|.+... +...+....+++++.+..+....
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 444 233445556 7889999999995443 33446667788888877766544
Done!