Query 005896
Match_columns 671
No_of_seqs 464 out of 3664
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:24:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-43 3.4E-48 401.3 19.8 526 75-659 126-766 (768)
2 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-42 9.8E-47 381.2 26.5 521 73-652 30-572 (606)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-41 1.3E-45 377.2 31.7 530 73-655 23-640 (680)
4 3rgz_A Protein brassinosteroid 100.0 1.5E-41 5.2E-46 383.5 23.2 502 74-635 99-715 (768)
5 3t6q_A CD180 antigen; protein- 100.0 5.8E-41 2E-45 370.7 24.5 523 73-652 31-574 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 1E-38 3.4E-43 364.3 33.7 519 73-649 22-571 (844)
7 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-37 8.1E-42 346.5 33.7 488 100-634 25-594 (680)
8 2z63_A TOLL-like receptor 4, v 100.0 1E-37 3.6E-42 342.4 22.0 488 73-650 26-544 (570)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-36 3.8E-41 336.4 30.2 481 73-615 54-559 (606)
10 3t6q_A CD180 antigen; protein- 100.0 3.7E-37 1.3E-41 340.2 24.8 481 74-612 56-558 (606)
11 2z81_A CD282 antigen, TOLL-lik 100.0 3.7E-37 1.3E-41 336.2 23.6 458 100-641 26-513 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 8.8E-36 3E-40 340.0 35.1 502 98-663 22-557 (844)
13 2z7x_B TOLL-like receptor 1, v 100.0 4E-36 1.4E-40 325.5 27.5 462 103-651 3-495 (520)
14 2z81_A CD282 antigen, TOLL-lik 100.0 9.2E-36 3.2E-40 325.1 25.7 457 73-612 24-508 (549)
15 4ecn_A Leucine-rich repeat pro 100.0 1.8E-35 6.3E-40 330.9 22.3 359 145-585 436-836 (876)
16 4eco_A Uncharacterized protein 100.0 2.5E-35 8.6E-40 325.0 21.6 422 100-635 81-598 (636)
17 4g8a_A TOLL-like receptor 4; l 100.0 8.5E-35 2.9E-39 323.8 26.0 515 101-669 53-611 (635)
18 4eco_A Uncharacterized protein 100.0 1.5E-35 5E-40 326.9 17.9 35 75-110 81-115 (636)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-34 6E-39 315.1 25.2 462 98-646 29-518 (562)
20 4ecn_A Leucine-rich repeat pro 100.0 4.2E-34 1.4E-38 319.9 27.5 358 192-635 436-838 (876)
21 2z63_A TOLL-like receptor 4, v 100.0 9.2E-34 3.2E-38 311.0 27.2 465 73-618 50-535 (570)
22 2z7x_B TOLL-like receptor 1, v 100.0 5E-34 1.7E-38 309.0 24.5 453 78-612 3-479 (520)
23 1jl5_A Outer protein YOPM; leu 100.0 2.1E-32 7.1E-37 288.3 23.7 388 133-635 10-427 (454)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-31 3.5E-36 293.2 26.7 451 77-612 33-508 (562)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-29 4.2E-34 282.2 28.4 487 73-612 50-578 (635)
26 1jl5_A Outer protein YOPM; leu 100.0 4.6E-30 1.6E-34 270.4 22.5 407 75-618 11-433 (454)
27 1o6v_A Internalin A; bacterial 100.0 3.3E-29 1.1E-33 266.6 27.0 120 98-235 44-163 (466)
28 3bz5_A Internalin-J, INLJ; leu 100.0 6.6E-29 2.3E-33 261.8 24.7 121 94-236 36-156 (457)
29 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-29 1E-33 264.5 21.8 101 129-238 37-137 (457)
30 1o6v_A Internalin A; bacterial 100.0 1.3E-28 4.5E-33 262.0 26.1 349 132-619 44-392 (466)
31 3v47_A TOLL-like receptor 5B a 100.0 8.7E-29 3E-33 263.2 24.8 362 138-613 14-407 (455)
32 3v47_A TOLL-like receptor 5B a 100.0 1.3E-27 4.4E-32 254.2 24.2 150 74-234 29-186 (455)
33 3o6n_A APL1; leucine-rich repe 100.0 4.5E-28 1.5E-32 251.9 19.7 309 97-537 42-353 (390)
34 4fmz_A Internalin; leucine ric 100.0 2.5E-27 8.7E-32 242.3 22.7 82 130-215 40-121 (347)
35 2id5_A Lingo-1, leucine rich r 99.9 3.8E-26 1.3E-30 244.2 28.5 308 137-585 14-329 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 1.1E-26 3.7E-31 241.4 21.9 226 339-651 139-365 (390)
37 4fmz_A Internalin; leucine ric 99.9 8.1E-27 2.8E-31 238.6 18.6 128 94-238 38-165 (347)
38 3oja_B Anopheles plasmodium-re 99.9 1.2E-26 4.2E-31 254.4 20.4 303 97-478 48-356 (597)
39 2id5_A Lingo-1, leucine rich r 99.9 4.2E-26 1.4E-30 243.8 23.0 308 159-612 13-331 (477)
40 3oja_B Anopheles plasmodium-re 99.9 6.5E-26 2.2E-30 248.6 22.0 225 339-650 145-370 (597)
41 1xku_A Decorin; proteoglycan, 99.9 5.2E-24 1.8E-28 215.8 20.9 96 135-236 32-129 (330)
42 2ft3_A Biglycan; proteoglycan, 99.9 3.2E-24 1.1E-28 217.5 18.9 98 135-238 34-133 (332)
43 4fcg_A Uncharacterized protein 99.9 1.3E-23 4.6E-28 211.7 17.6 194 132-384 79-273 (328)
44 3ogk_B Coronatine-insensitive 99.9 5.6E-25 1.9E-29 242.2 2.9 251 339-611 268-548 (592)
45 1ogq_A PGIP-2, polygalacturona 99.9 7.7E-24 2.6E-28 212.2 10.0 249 75-406 50-303 (313)
46 1ogq_A PGIP-2, polygalacturona 99.9 8.9E-24 3E-28 211.8 7.9 251 100-439 50-306 (313)
47 1xku_A Decorin; proteoglycan, 99.9 2.8E-22 9.4E-27 203.1 18.6 102 134-239 52-156 (330)
48 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-22 7.1E-27 204.1 17.5 269 134-457 54-331 (332)
49 4fcg_A Uncharacterized protein 99.9 2.3E-22 7.8E-27 202.7 15.8 217 155-443 79-295 (328)
50 3ogk_B Coronatine-insensitive 99.9 1.1E-24 3.9E-29 239.7 -1.9 427 94-585 67-547 (592)
51 3g06_A SSPH2 (leucine-rich rep 99.9 5.7E-21 1.9E-25 207.1 26.9 73 134-215 40-112 (622)
52 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-21 1.2E-25 208.7 23.5 108 100-234 40-147 (622)
53 1z7x_W Ribonuclease inhibitor; 99.9 1.3E-24 4.5E-29 231.5 -9.7 107 75-190 3-123 (461)
54 2z80_A TOLL-like receptor 2, v 99.9 7.2E-21 2.5E-25 194.6 17.6 86 134-221 52-140 (353)
55 2z80_A TOLL-like receptor 2, v 99.8 6.2E-21 2.1E-25 195.0 14.5 129 100-239 52-185 (353)
56 3zyj_A Leucine-rich repeat-con 99.8 8.6E-20 3E-24 192.4 23.6 243 318-612 45-290 (440)
57 2z66_A Variable lymphocyte rec 99.8 7.1E-21 2.4E-25 190.5 13.0 80 135-215 29-112 (306)
58 3zyi_A Leucine-rich repeat-con 99.8 2.1E-19 7.2E-24 190.1 23.8 244 318-612 56-301 (452)
59 3o53_A Protein LRIM1, AGAP0063 99.8 4.6E-22 1.6E-26 199.9 3.1 256 123-443 23-281 (317)
60 2z66_A Variable lymphocyte rec 99.8 6.5E-21 2.2E-25 190.8 11.2 225 100-375 28-259 (306)
61 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-22 5.1E-27 215.5 -3.6 159 340-511 255-438 (461)
62 3zyj_A Leucine-rich repeat-con 99.8 1E-19 3.6E-24 191.8 18.1 101 134-236 64-168 (440)
63 3zyi_A Leucine-rich repeat-con 99.8 8.1E-20 2.8E-24 193.3 17.0 101 134-236 75-179 (452)
64 2p1m_B Transport inhibitor res 99.8 4.1E-22 1.4E-26 219.4 -1.8 241 94-374 60-324 (594)
65 1ozn_A Reticulon 4 receptor; N 99.8 2E-20 7E-25 185.1 10.6 201 134-376 32-237 (285)
66 3o53_A Protein LRIM1, AGAP0063 99.8 2.8E-21 9.6E-26 194.2 3.7 246 95-408 29-276 (317)
67 1ozn_A Reticulon 4 receptor; N 99.8 2.6E-19 8.9E-24 177.1 14.5 196 137-376 14-213 (285)
68 1wwl_A Monocyte differentiatio 99.8 4.4E-20 1.5E-24 185.0 7.3 83 132-215 93-184 (312)
69 2xwt_C Thyrotropin receptor; s 99.8 4E-18 1.4E-22 163.7 19.2 214 328-637 23-239 (239)
70 3oja_A Leucine-rich immune mol 99.8 5.2E-20 1.8E-24 195.7 6.5 103 125-235 49-151 (487)
71 1wwl_A Monocyte differentiatio 99.8 1.5E-20 5.1E-25 188.4 1.3 129 95-238 38-183 (312)
72 1p9a_G Platelet glycoprotein I 99.8 2.1E-18 7.3E-23 170.2 16.3 200 130-375 6-206 (290)
73 2p1m_B Transport inhibitor res 99.8 5.5E-21 1.9E-25 210.4 -3.4 390 97-557 102-540 (594)
74 3oja_A Leucine-rich immune mol 99.8 7.5E-20 2.6E-24 194.5 3.9 241 130-435 30-273 (487)
75 2z62_A TOLL-like receptor 4, v 99.8 3.5E-18 1.2E-22 168.1 15.2 188 125-376 43-236 (276)
76 1h6u_A Internalin H; cell adhe 99.8 8.5E-19 2.9E-23 174.9 10.2 60 312-375 169-228 (308)
77 2o6q_A Variable lymphocyte rec 99.8 5.2E-18 1.8E-22 166.1 15.2 61 314-375 155-216 (270)
78 4ay9_X Follicle-stimulating ho 99.8 5.2E-17 1.8E-21 165.3 21.6 238 320-610 13-255 (350)
79 3rfs_A Internalin B, repeat mo 99.7 1E-17 3.4E-22 164.2 13.9 100 131-234 38-139 (272)
80 1p9a_G Platelet glycoprotein I 99.7 1.3E-17 4.6E-22 164.5 14.8 197 423-641 9-211 (290)
81 1h6u_A Internalin H; cell adhe 99.7 1.3E-17 4.6E-22 166.3 11.4 195 96-355 37-231 (308)
82 2z62_A TOLL-like receptor 4, v 99.7 1.4E-17 4.9E-22 163.7 10.4 99 134-234 28-130 (276)
83 2xwt_C Thyrotropin receptor; s 99.7 3E-17 1E-21 157.5 12.4 195 135-404 32-236 (239)
84 2o6q_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 156.8 14.9 197 134-405 16-216 (270)
85 4glp_A Monocyte differentiatio 99.7 1E-16 3.5E-21 160.4 13.0 230 97-375 61-305 (310)
86 3rfs_A Internalin B, repeat mo 99.7 1.1E-16 3.9E-21 156.6 12.6 128 94-236 35-165 (272)
87 2ast_B S-phase kinase-associat 99.7 5.9E-18 2E-22 171.8 1.8 239 128-445 62-313 (336)
88 4ay9_X Follicle-stimulating ho 99.7 4E-15 1.4E-19 151.4 22.3 239 344-634 12-256 (350)
89 2ca6_A RAN GTPase-activating p 99.7 6.2E-18 2.1E-22 175.0 -0.4 91 279-376 183-286 (386)
90 3m19_A Variable lymphocyte rec 99.6 2.4E-15 8.3E-20 145.3 16.4 173 134-376 14-191 (251)
91 2ca6_A RAN GTPase-activating p 99.6 1.6E-17 5.5E-22 171.9 0.5 244 93-377 25-316 (386)
92 1h6t_A Internalin B; cell adhe 99.6 6.2E-16 2.1E-20 152.7 8.9 99 131-235 43-141 (291)
93 4glp_A Monocyte differentiatio 99.6 4.3E-15 1.5E-19 148.5 14.5 153 465-635 143-305 (310)
94 3cvr_A Invasion plasmid antige 99.6 8.4E-16 2.9E-20 164.5 9.8 184 135-384 60-250 (571)
95 1h6t_A Internalin B; cell adhe 99.6 1.7E-15 5.7E-20 149.6 10.8 125 95-237 41-165 (291)
96 2ast_B S-phase kinase-associat 99.6 3.5E-17 1.2E-21 166.1 -1.5 35 341-375 70-104 (336)
97 3m19_A Variable lymphocyte rec 99.6 9.5E-15 3.3E-19 141.1 13.0 156 73-241 33-192 (251)
98 1m9s_A Internalin B; cell inva 99.6 7.3E-16 2.5E-20 166.9 5.0 103 130-238 39-141 (605)
99 1m9s_A Internalin B; cell inva 99.6 2.3E-15 7.8E-20 163.0 7.4 127 94-238 37-163 (605)
100 3goz_A Leucine-rich repeat-con 99.6 4.1E-16 1.4E-20 159.6 1.0 87 128-215 16-120 (362)
101 4ezg_A Putative uncharacterize 99.5 7.8E-15 2.7E-19 135.9 8.8 146 75-238 44-191 (197)
102 2o6s_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 132.6 12.8 81 137-221 10-92 (208)
103 3cvr_A Invasion plasmid antige 99.5 9.1E-15 3.1E-19 156.4 9.5 189 100-358 59-247 (571)
104 1xeu_A Internalin C; cellular 99.5 2.6E-15 9E-20 145.7 4.0 79 133-215 18-96 (263)
105 2ell_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 128.2 10.7 135 98-244 22-163 (168)
106 4ezg_A Putative uncharacterize 99.5 5.4E-14 1.9E-18 130.2 12.6 144 97-256 41-186 (197)
107 3e6j_A Variable lymphocyte rec 99.5 6E-14 2.1E-18 133.1 12.0 130 100-241 40-172 (229)
108 2v9t_B SLIT homolog 2 protein 99.5 1.1E-13 3.6E-18 130.5 13.5 94 137-234 14-110 (220)
109 1xeu_A Internalin C; cellular 99.5 1.1E-14 3.8E-19 141.3 6.4 168 155-376 17-184 (263)
110 2je0_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 124.9 7.4 126 98-235 15-147 (149)
111 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 130.0 12.1 136 489-635 31-170 (229)
112 3goz_A Leucine-rich repeat-con 99.5 8.2E-15 2.8E-19 149.9 3.1 240 93-377 14-297 (362)
113 2v9t_B SLIT homolog 2 protein 99.5 2.2E-13 7.4E-18 128.3 12.0 129 100-240 32-164 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.5 1.5E-13 5.3E-18 129.3 10.4 149 79-241 15-166 (220)
115 4b8c_D Glucose-repressible alc 99.5 1.2E-13 4.2E-18 153.5 10.5 159 74-242 172-330 (727)
116 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-13 4.1E-18 125.3 8.5 132 94-239 13-151 (176)
117 2v70_A SLIT-2, SLIT homolog 2 99.4 2.6E-13 9E-18 127.8 11.0 135 73-218 30-167 (220)
118 2ell_A Acidic leucine-rich nuc 99.4 1.2E-13 4E-18 124.4 8.2 138 73-224 22-166 (168)
119 2o6s_A Variable lymphocyte rec 99.4 3.8E-13 1.3E-17 125.8 11.7 129 99-239 27-159 (208)
120 2xot_A Amphoterin-induced prot 99.4 1.8E-13 6.1E-18 139.8 9.7 96 137-236 21-120 (361)
121 1dce_A Protein (RAB geranylger 99.4 2.1E-15 7.3E-20 162.3 -7.6 84 312-401 482-567 (567)
122 2xot_A Amphoterin-induced prot 99.4 3.3E-13 1.1E-17 137.8 8.3 112 126-239 55-174 (361)
123 2je0_A Acidic leucine-rich nuc 99.4 4.6E-13 1.6E-17 117.7 7.6 128 73-213 15-149 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.4 4.6E-13 1.6E-17 121.4 5.4 135 129-295 14-152 (176)
125 1w8a_A SLIT protein; signaling 99.3 1.4E-12 4.9E-17 119.9 8.4 105 135-240 30-138 (192)
126 4b8c_D Glucose-repressible alc 99.3 1.3E-13 4.5E-18 153.3 1.6 122 93-226 217-338 (727)
127 2wfh_A SLIT homolog 2 protein 99.3 3.4E-12 1.2E-16 117.3 10.1 103 134-238 31-136 (193)
128 1w8a_A SLIT protein; signaling 99.3 2.6E-12 9E-17 118.1 9.2 128 137-298 11-141 (192)
129 2wfh_A SLIT homolog 2 protein 99.3 3.4E-12 1.2E-16 117.3 9.5 122 79-216 14-138 (193)
130 1dce_A Protein (RAB geranylger 99.3 3.6E-12 1.2E-16 137.2 10.1 107 135-245 442-550 (567)
131 1ds9_A Outer arm dynein; leuci 99.3 3.1E-14 1.1E-18 131.9 -5.8 107 129-239 43-151 (198)
132 1ds9_A Outer arm dynein; leuci 99.3 1.3E-13 4.3E-18 127.8 -2.8 145 76-234 24-180 (198)
133 3sb4_A Hypothetical leucine ri 99.2 6.9E-11 2.4E-15 118.9 15.2 120 98-234 23-154 (329)
134 2r9u_A Variable lymphocyte rec 99.2 1.6E-11 5.5E-16 110.6 8.9 101 137-241 15-118 (174)
135 2o6r_A Variable lymphocyte rec 99.2 3.9E-11 1.3E-15 108.7 9.4 103 134-238 28-134 (177)
136 2o6r_A Variable lymphocyte rec 99.2 5.8E-11 2E-15 107.6 10.4 129 136-299 9-140 (177)
137 3g39_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 107.8 8.8 101 136-240 11-114 (170)
138 3sb4_A Hypothetical leucine ri 99.2 1.1E-10 3.9E-15 117.3 12.4 245 363-630 24-327 (329)
139 2r9u_A Variable lymphocyte rec 99.1 8.9E-11 3.1E-15 105.7 9.2 88 134-223 33-123 (174)
140 4fdw_A Leucine rich hypothetic 99.1 1.7E-08 5.9E-13 103.6 24.7 204 423-654 179-396 (401)
141 3g39_A Variable lymphocyte rec 99.1 2.5E-10 8.5E-15 102.4 9.2 83 133-216 29-114 (170)
142 4fdw_A Leucine rich hypothetic 99.0 4.8E-09 1.6E-13 107.7 17.8 120 98-235 111-233 (401)
143 4fs7_A Uncharacterized protein 99.0 5.3E-08 1.8E-12 100.4 24.7 80 522-610 296-375 (394)
144 4fs7_A Uncharacterized protein 98.9 6.3E-08 2.2E-12 99.8 20.2 124 94-235 65-192 (394)
145 2ifg_A High affinity nerve gro 98.9 3.7E-09 1.3E-13 107.2 8.6 98 139-239 13-114 (347)
146 2ifg_A High affinity nerve gro 98.8 1E-08 3.4E-13 103.9 9.0 91 123-216 22-115 (347)
147 3un9_A NLR family member X1; l 98.7 2.8E-09 9.5E-14 108.4 0.5 158 73-241 70-252 (372)
148 4gt6_A Cell surface protein; l 98.6 1.7E-06 5.7E-11 89.1 18.5 125 94-234 57-188 (394)
149 3e4g_A ATP synthase subunit S, 98.5 2.5E-08 8.6E-13 87.7 2.6 91 524-616 62-154 (176)
150 4gt6_A Cell surface protein; l 98.5 1.4E-05 4.7E-10 82.2 23.2 88 123-213 52-146 (394)
151 3un9_A NLR family member X1; l 98.5 7.2E-08 2.5E-12 97.9 3.9 132 75-216 101-251 (372)
152 2ra8_A Uncharacterized protein 98.3 3.8E-07 1.3E-11 91.8 4.6 193 73-295 105-319 (362)
153 4h09_A Hypothetical leucine ri 98.3 0.00018 6.1E-09 73.4 24.2 82 94-190 40-123 (379)
154 4h09_A Hypothetical leucine ri 98.3 7.3E-05 2.5E-09 76.3 21.0 82 128-214 40-123 (379)
155 3rw6_A Nuclear RNA export fact 98.2 3E-07 1E-11 87.5 1.1 104 130-235 137-258 (267)
156 2ra8_A Uncharacterized protein 98.2 8.6E-07 2.9E-11 89.2 4.5 36 340-375 278-318 (362)
157 1io0_A Tropomodulin; LRR prote 98.2 1.4E-06 4.9E-11 78.8 5.1 111 95-215 31-162 (185)
158 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.8E-11 77.2 3.7 67 497-564 82-154 (176)
159 1io0_A Tropomodulin; LRR prote 98.1 7.7E-07 2.6E-11 80.6 2.2 117 123-240 25-163 (185)
160 2a5y_B CED-4; apoptosis; HET: 98.1 7E-07 2.4E-11 95.9 1.9 61 1-62 411-473 (549)
161 3rw6_A Nuclear RNA export fact 98.0 4.3E-06 1.5E-10 79.5 5.2 82 129-211 165-258 (267)
162 3rfe_A Platelet glycoprotein I 96.5 0.0034 1.2E-07 52.4 5.9 53 552-612 12-66 (130)
163 3rfe_A Platelet glycoprotein I 96.3 0.0052 1.8E-07 51.2 5.7 51 138-190 12-65 (130)
164 1pgv_A TMD-1, tropomodulin TMD 95.2 0.018 6.1E-07 51.5 4.6 62 129-190 36-108 (197)
165 1pgv_A TMD-1, tropomodulin TMD 95.1 0.017 5.7E-07 51.7 4.2 114 96-215 37-168 (197)
166 3sfz_A APAF-1, apoptotic pepti 93.0 0.085 2.9E-06 62.7 5.8 45 16-60 408-452 (1249)
167 1z6t_A APAF-1, apoptotic prote 87.6 0.51 1.8E-05 50.8 5.4 41 17-57 409-449 (591)
168 1vt4_I APAF-1 related killer D 81.5 0.77 2.6E-05 51.8 3.3 36 17-54 402-437 (1221)
169 2lz0_A Uncharacterized protein 44.0 37 0.0013 26.0 5.1 47 561-611 7-53 (100)
170 2lz0_A Uncharacterized protein 32.9 1.3E+02 0.0045 22.8 6.7 45 536-585 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-43 Score=401.35 Aligned_cols=526 Identities=16% Similarity=0.099 Sum_probs=293.6
Q ss_pred CceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhh--hcCCCceeEEEecCCCccccCcc
Q 005896 75 ERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDL--LPMFKMLRMLSLQGYRIGELPIP 152 (671)
Q Consensus 75 ~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~L~L~~~~l~~lp~~ 152 (671)
...+++.+..+..........+.++++|++|.+.+ |.+....+..+ +.++++|++|++++|.+.... .
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~---------n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~ 195 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA---------NSISGANVVGWVLSDGCGELKHLAISGNKISGDV-D 195 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS---------SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC-B
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC---------CccCCcCChhhhhhccCCCCCEEECCCCcccccC-C
Confidence 46777887766544322222235677777777777 33333222221 555666666666666554322 1
Q ss_pred cCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCc
Q 005896 153 FEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQT 232 (671)
Q Consensus 153 ~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 232 (671)
+..+++|++|+|++|.++..++.++++++|++|++++|...+.+|..++.+++|++|++++|.+.+.+|.. .+++|++
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 24555566666666655543222555566666666655322345555555555555555555544444332 4455555
Q ss_pred cceeEecCC-cccccccC-chhhHhcCCccEEecccCCCChhhhhhhc-------------------------cCCCCCC
Q 005896 233 LSNFIVGKG-ECASGLED-LKSLNLLCDELCIAGLENVNSPQNAREAA-------------------------LREKHNL 285 (671)
Q Consensus 233 L~~~~~~~~-~~~~~~~~-l~~L~~L~~~l~~~~~~~~~~~~~~~~~~-------------------------l~~l~~L 285 (671)
|++..+... ..+..+.. +.+|+.|.. ..+......+.. +.++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~L--------s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDL--------SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEEC--------CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEEC--------cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 544443322 11111211 133332210 011111122233 4445555
Q ss_pred CceEEEEecCCCCCCchhhHHHHhccCCCCC-CCcEEEEeccCCc-cCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCC
Q 005896 286 EALTLEWGSQSDSPRDAVLEEKVLDTLQPHE-RIKELAIKHYGGA-RFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGL 362 (671)
Q Consensus 286 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~ 362 (671)
+.|++++|.+.+..+... ..++ +|+.|+++++... .+|.++....+++|++|++++|.+.+.+| .++.
T Consensus 346 ~~L~Ls~n~l~~~~p~~l---------~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESL---------TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp CEEECCSSEEEECCCTTH---------HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred CEEeCcCCccCccccHHH---------HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 555555554422222111 1112 5555555555432 23444432225566666666666655555 5666
Q ss_pred CCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCC
Q 005896 363 MSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP 442 (671)
Q Consensus 363 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp 442 (671)
+++|++|++++|.....++..+.. +++|+.|+++++.........+.. +++|++|++++ +++++.+|
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~-N~l~~~~p 483 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGS------LSKLRDLKLWLNMLEGEIPQELMY------VKTLETLILDF-NDLTGEIP 483 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGG------CTTCCEEECCSSCCCSCCCGGGGG------CTTCCEEECCS-SCCCSCCC
T ss_pred CCCCCEEECcCCcccCcccHHHhc------CCCCCEEECCCCcccCcCCHHHcC------CCCceEEEecC-CcccCcCC
Confidence 666666666666544444444433 666677766665533233222222 67777777777 46665666
Q ss_pred C---CCCCccEEEEeccCCc---CccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCccc
Q 005896 443 G---LLPSLETLVVRKCGKL---VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSF 516 (671)
Q Consensus 443 ~---~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~ 516 (671)
. .+++|+.|++++|... +..+..+++|++|++++|... +.+|..+..+++|+.|++++|+....+
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS---------GNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE---------EECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc---------CcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 3 4677777777777533 344556777777777777643 467777888888888888888544344
Q ss_pred CCC-----------------------------------------------------------------------CCCCCc
Q 005896 517 PEE-----------------------------------------------------------------------GFPTNL 525 (671)
Q Consensus 517 ~~~-----------------------------------------------------------------------~~~~~L 525 (671)
|.. ..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 321 123678
Q ss_pred ceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCc-cCCccCCCCCCccC
Q 005896 526 TTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLI-FLSSMGFQNLTSLQ 604 (671)
Q Consensus 526 ~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~l~~l~~L~ 604 (671)
+.|++++|+..+.+|. .++++++|+.|++++ |...+.+|. .+ ..+++|++|++++ |+++ .+| ..+..+++|+
T Consensus 635 ~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~-N~l~g~ip~-~l--~~L~~L~~LdLs~-N~l~g~ip-~~l~~l~~L~ 707 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPK-EIGSMPYLFILNLGH-NDISGSIPD-EV--GDLRGLNILDLSS-NKLDGRIP-QAMSALTMLT 707 (768)
T ss_dssp CEEECCSSCCBSCCCG-GGGGCTTCCEEECCS-SCCCSCCCG-GG--GGCTTCCEEECCS-SCCEECCC-GGGGGCCCCS
T ss_pred cEEECcCCcccccCCH-HHhccccCCEEeCcC-CccCCCCCh-HH--hCCCCCCEEECCC-CcccCcCC-hHHhCCCCCC
Confidence 8899988776656665 588899999999998 554557777 55 5788999999999 4565 667 7888999999
Q ss_pred eEeecCCCCCCcCCCCCCCCCccEEEEeCChhh-----HHHHhhCCCCCCCceeccceEE
Q 005896 605 YLRIGNCPNLTSFPEVGLPSSLLELHIYGCPNL-----KKACKRDQGKEWPKIAHIPFVG 659 (671)
Q Consensus 605 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l-----~~~~~~~~~~~~~~~~~~~~~~ 659 (671)
+|++++|+....+|..+.+.++....+.+||.| . .|....+++|++++|+++.+
T Consensus 708 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC--------------
T ss_pred EEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCCCCCCccccC
Confidence 999999966677887666666666666676543 3 68888999999999999865
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-42 Score=381.16 Aligned_cols=521 Identities=18% Similarity=0.144 Sum_probs=344.0
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-Cc
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PI 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~ 151 (671)
.+..++++.+..+.+.. .....|.++++|++|.+.+ |.+ ..+++.+|.++++|++|+|++|.+..+ |.
T Consensus 30 ~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~---------n~l-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSR---------CEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp SCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTT---------CCC-CEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCC---------Ccc-cccCHHHhhchhhcCEeECCCCcccccChh
Confidence 44567777777665544 2234566777777777776 333 345556677777777777777777665 56
Q ss_pred ccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCcccc--ccchhhhccCcceEEeecCCccccccCccCCCCC
Q 005896 152 PFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLI--KLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELN 228 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~ 228 (671)
.|+++++|++|+|++|.++.+| ..++++++|++|++++| .+. .+|..++++++|++|++++|.+.+..|..++.++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 6777777777777777777664 56777777777777777 444 4677777777777777777774433344466555
Q ss_pred CCC----ccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhh
Q 005896 229 KLQ----TLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVL 304 (671)
Q Consensus 229 ~L~----~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (671)
+|+ +|++..+.....+.......+|+.+ . +..........+..+.+++.|+.+++..+...........
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L----~---L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL----T---LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEEEE----E---EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccccccceeeccCCCcceeCcccccCceeeee----e---ccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 554 4555444443322211111122222 1 1111111234445566666777666665554322111111
Q ss_pred HHHHhccCCCCCCCcEEEE-eccCCc-cCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccc
Q 005896 305 EEKVLDTLQPHERIKELAI-KHYGGA-RFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIES 382 (671)
Q Consensus 305 ~~~~~~~l~~~~~L~~L~l-~~~~~~-~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 382 (671)
....+..+... .++.+.+ ..+... .+|. +. .+++|+.|++++|.+. .+|.+..+++|++|++++|.. +.++
T Consensus 251 ~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~~-~l~~l~~~~~L~~L~l~~n~l-~~lp- 323 (606)
T 3vq2_A 251 EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQL-KQFP- 323 (606)
T ss_dssp CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEEESCCCC-CCCCCCTTCCCSEEEEESCCC-SSCC-
T ss_pred ChHHhhhhhhc-cHhheeccccccccccccc-cc--cCCCCCEEEecCccch-hhhhccccccCCEEEcccccC-cccc-
Confidence 11112222211 3455555 223322 2333 33 5888999999998874 455888889999999999876 5555
Q ss_pred cccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccC--CC---CCCCCccEEEEeccC
Q 005896 383 EVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGE--LP---GLLPSLETLVVRKCG 457 (671)
Q Consensus 383 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--lp---~~l~~L~~L~l~~~~ 457 (671)
.+ . +++|+.|+++++...... .+.. +++|++|++++ +.+++. +| ..+++|++|++++|.
T Consensus 324 ~~-~------l~~L~~L~l~~n~~~~~~--~~~~------l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 324 TL-D------LPFLKSLTLTMNKGSISF--KKVA------LPSLSYLDLSR-NALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp CC-C------CSSCCEEEEESCSSCEEC--CCCC------CTTCCEEECCS-SCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred cC-C------CCccceeeccCCcCccch--hhcc------CCCCCEEECcC-CccCCCcchhhhhccCCcccEeECCCCc
Confidence 33 3 889999999887544433 1122 89999999998 466633 24 468899999999986
Q ss_pred Cc--CccCCCCCCcceEEeccCCCcccccCCCCCccC-c-ccCCCCCCCCeeEeecCCCCcccCCC-CCCCCcceEEEcc
Q 005896 458 KL--VVPLSSYPMLCRLEVDECKELVDICGCDKLEAL-P-NDMHKLNSLRDLGIQLCPNLVSFPEE-GFPTNLTTLVIGN 532 (671)
Q Consensus 458 ~l--~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l-~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~ 532 (671)
.. ...+..+++|+.|++++|.. ..+ | ..+..+++|++|++++|......|.. ..+++|++|++++
T Consensus 388 l~~~~~~~~~l~~L~~L~l~~n~l----------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 388 AIIMSANFMGLEELQHLDFQHSTL----------KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp EEEECCCCTTCTTCCEEECTTSEE----------ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred cccchhhccCCCCCCeeECCCCcc----------CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 43 45677899999999999883 333 3 46789999999999999644444443 5678999999988
Q ss_pred CcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCC
Q 005896 533 FKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCP 612 (671)
Q Consensus 533 ~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 612 (671)
|...+...+..+..+++|++|++++ +.+..++...+ ..+++|++|++++ +.++.+++..+..+++|++|++++|
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N- 531 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSK--CQLEQISWGVF--DTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLDCSFN- 531 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTT--SCCCEECTTTT--TTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCEEECTTS-
T ss_pred CcCCCcchHHhhccCCCCCEEECCC--CcCCccChhhh--cccccCCEEECCC-CcCCCcCHHHccCCCcCCEEECCCC-
Confidence 8766545555689999999999998 56666654244 5789999999999 5677775488999999999999999
Q ss_pred CCCcCCCC--CCCCCccEEEEeCChhhHHHHhhCCCCCCCce
Q 005896 613 NLTSFPEV--GLPSSLLELHIYGCPNLKKACKRDQGKEWPKI 652 (671)
Q Consensus 613 ~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 652 (671)
.++.+|.. .++++|+.|+++++| +.+.|...+..+|.+-
T Consensus 532 ~l~~~p~~~~~l~~~L~~l~l~~N~-~~c~c~~~~~~~~l~~ 572 (606)
T 3vq2_A 532 RIETSKGILQHFPKSLAFFNLTNNS-VACICEHQKFLQWVKE 572 (606)
T ss_dssp CCCCEESCGGGSCTTCCEEECCSCC-CCCSSTTHHHHTTTTT
T ss_pred cCcccCHhHhhhcccCcEEEccCCC-cccCCccHHHHHHHHc
Confidence 78888874 234579999999988 7777776666667543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.9e-41 Score=377.19 Aligned_cols=530 Identities=17% Similarity=0.122 Sum_probs=353.5
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCc-
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPI- 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~- 151 (671)
.+..++++.+..+.+... ....|.++++|++|.+.+ +.+ ..+.+.+|..+++|++|+|++|.+..+|.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~---------n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGF---------NTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp SCTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCS---------SCC-CCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCC---------Ccc-CccCHHHHhcccCcCEEECCCCccCccChh
Confidence 567899999998877653 345689999999999998 443 45667789999999999999999999986
Q ss_pred ccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCc-cC--CCC
Q 005896 152 PFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPF-GM--KEL 227 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~-~l--~~l 227 (671)
.|+.+++|++|+|++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|. +..++. .+ ..+
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccc
Confidence 5899999999999999999885 679999999999999994434556668899999999999998 444443 33 356
Q ss_pred CCCCccceeEecCCccc-ccccCchhhHhcCC--------------------ccEEecccCCCChhhhhhhccCCCCC--
Q 005896 228 NKLQTLSNFIVGKGECA-SGLEDLKSLNLLCD--------------------ELCIAGLENVNSPQNAREAALREKHN-- 284 (671)
Q Consensus 228 ~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~~--------------------~l~~~~~~~~~~~~~~~~~~l~~l~~-- 284 (671)
++|+.|++..+...... ..+..+.+|+.+.. .+....+. .+......+..+..++.
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~-~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS-NSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT-TSCCCEECTTTTGGGGGSC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc-CCcccccChhHhhccCcCC
Confidence 88999988766544322 11333333322110 01111111 11122222333444433
Q ss_pred CCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCC-CCCCCCCCCCccEEEEeCCCCCC-----CCC
Q 005896 285 LEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFP-PWIGQHSFSEMKVLKLENCDNCA-----ALP 358 (671)
Q Consensus 285 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~~~~~~-----~~~ 358 (671)
|+.|++++|.+.... ...+..+++|+.|+++++....++ ..+. .+++|++|++++|.... .+|
T Consensus 250 L~~L~Ls~n~l~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVG---------NDSFAWLPQLEYFFLEYNNIQHLFSHSLH--GLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp CCEEECTTSCCCEEC---------TTTTTTCTTCCEEECCSCCBSEECTTTTT--TCTTCCEEECTTCBCCC------CC
T ss_pred CCEEECCCCCcCccC---------cccccCcccccEeeCCCCccCccChhhhc--CCCCccEEeccchhhhccccccccc
Confidence 777777777663222 123445566677777666654432 2333 35666666665543221 111
Q ss_pred -----CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCc----------------------------c
Q 005896 359 -----SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESL----------------------------P 405 (671)
Q Consensus 359 -----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------------------------~ 405 (671)
.++.+++|++|++++|......+..+.+ +++|+.|+++++ .
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG------LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT------CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred ccChhhcccCCCCCEEECCCCccCCCChhHhcc------ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence 3445566666666655433322222222 555555555543 2
Q ss_pred cccccccccCCCCccCCCCccceeeEecCCCCccCCC----CCCCCccEEEEeccCCc---CccCCCCCCcceEEeccCC
Q 005896 406 EWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP----GLLPSLETLVVRKCGKL---VVPLSSYPMLCRLEVDECK 478 (671)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~ 478 (671)
........+.+ +++|++|++++ +.+.+.+| ..+++|++|++++|... ...+..+++|+.|++++|.
T Consensus 393 l~~~~~~~~~~------l~~L~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 393 ISKIESDAFSW------LGHLEVLDLGL-NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp CCEECTTTTTT------CTTCCEEECCS-SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred CCeEChhhhhC------CCCCCEEeCCC-CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 21111111221 56666777666 35544444 34566677777666532 3345556777777776665
Q ss_pred CcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCC--CCCCCcceEEEccCcCccccc--------ccccCCCC
Q 005896 479 ELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEE--GFPTNLTTLVIGNFKLYKTLV--------QWGLHRLT 548 (671)
Q Consensus 479 ~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~--------~~~~~~l~ 548 (671)
. ..++.+|..+..+++|+.|++++| .++.++.. ..+++|++|++++|+. +.++ ...+.+++
T Consensus 466 l-------~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 466 L-------KNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp C-------BCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTTCT
T ss_pred c-------cccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCc-cccchhhccCCcchhhcCCC
Confidence 2 224567888999999999999999 56677654 4678999999988764 4332 22378899
Q ss_pred CcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCC---CCCC
Q 005896 549 SLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVG---LPSS 625 (671)
Q Consensus 549 ~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~---~~~~ 625 (671)
+|+.|++++ +.++.+|...+ ..+++|++|++++ ++++.+|...+..+++|++|++++| .++.++... .+++
T Consensus 537 ~L~~L~L~~--N~l~~i~~~~~--~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~ 610 (680)
T 1ziw_A 537 HLHILNLES--NGFDEIPVEVF--KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRN 610 (680)
T ss_dssp TCCEEECCS--SCCCCCCTTTT--TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTT
T ss_pred CCCEEECCC--CCCCCCCHHHc--ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccc
Confidence 999999998 78888887444 6789999999998 7899999777899999999999999 888887632 4689
Q ss_pred ccEEEEeCChhhHHHHhh-CCCCCCCceecc
Q 005896 626 LLELHIYGCPNLKKACKR-DQGKEWPKIAHI 655 (671)
Q Consensus 626 L~~L~l~~c~~l~~~~~~-~~~~~~~~~~~~ 655 (671)
|+.|++++|| +.|.|.. .+..+|.+..+.
T Consensus 611 L~~l~l~~N~-~~c~c~~~~~~~~~~~~~~~ 640 (680)
T 1ziw_A 611 LTELDMRFNP-FDCTCESIAWFVNWINETHT 640 (680)
T ss_dssp CSEEECTTCC-CCBCCCCCSSEECCSSCC--
T ss_pred cCEEEccCCC-cccCCccHHHHHHHHHhcCc
Confidence 9999999998 8888885 777788655443
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-41 Score=383.53 Aligned_cols=502 Identities=18% Similarity=0.135 Sum_probs=332.1
Q ss_pred CCceeEEEeEeCCCCCccchh--hhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-
Q 005896 74 FERVRHSSYACGGRDGKNMFE--VFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP- 150 (671)
Q Consensus 74 ~~~~~~lsl~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp- 150 (671)
....+++.+..+.+.+ ..+. .+.++++|++|.+.+ |......+...+..+++|++|++++|.+...+
T Consensus 99 l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~---------n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 168 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSS---------NTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168 (768)
T ss_dssp CTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCS---------SEEECCSSCCSCCCCTTCSEEECCSSCCEEETH
T ss_pred CCCCCEEECCCCcCCC-cCCChHHHhCCCCCCEEECcC---------CccCCcCCHHHhccCCCCCEEECCCCccCCcCC
Confidence 4678999998876543 2234 788999999999999 55555556556689999999999999996554
Q ss_pred cc---cCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCC
Q 005896 151 IP---FEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKEL 227 (671)
Q Consensus 151 ~~---~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l 227 (671)
.. +.++++|++|++++|.++.... ++.+++|++|++++|...+.+|. ++.+++|++|++++|.+.+.+|..++++
T Consensus 169 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 246 (768)
T 3rgz_A 169 VGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC 246 (768)
T ss_dssp HHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTC
T ss_pred hhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcC
Confidence 44 7899999999999999986533 38999999999999944445666 9999999999999999777888899999
Q ss_pred CCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCC-CCCCceEEEEecCCCCCCchhhHH
Q 005896 228 NKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREK-HNLEALTLEWGSQSDSPRDAVLEE 306 (671)
Q Consensus 228 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~ 306 (671)
++|++|++..+....... ...+.+|+.|.. ..+......+..+... ++|+.|++++|.+.+..+.
T Consensus 247 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L--------~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~----- 312 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIP-PLPLKSLQYLSL--------AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP----- 312 (768)
T ss_dssp SSCCEEECCSSCCEESCC-CCCCTTCCEEEC--------CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-----
T ss_pred CCCCEEECCCCcccCccC-ccccCCCCEEEC--------cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-----
Confidence 999999988876654333 225555555431 1122333444555554 8999999999887443332
Q ss_pred HHhccCCCCCCCcEEEEeccCCc-cCCCC-CCCCCCCCccEEEEeCCCCCCCCC-CCCCCC-CccEEEEeCCC-------
Q 005896 307 KVLDTLQPHERIKELAIKHYGGA-RFPPW-IGQHSFSEMKVLKLENCDNCAALP-SLGLMS-SLKILAVKGLK------- 375 (671)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~-~~p~~-~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~-~L~~L~L~~~~------- 375 (671)
.+..+++|+.|+++++... .+|.. +. .+++|++|++++|.+.+.+| .++.++ +|++|++++|.
T Consensus 313 ----~~~~l~~L~~L~L~~n~l~~~ip~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 313 ----FFGSCSLLESLALSSNNFSGELPMDTLL--KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp ----GGGGCTTCCEEECCSSEEEEECCHHHHT--TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred ----HHhcCCCccEEECCCCcccCcCCHHHHh--cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence 2334456666666666544 45543 33 35566666666665544443 344443 45555555544
Q ss_pred -------------------CceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCC
Q 005896 376 -------------------KLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQ 436 (671)
Q Consensus 376 -------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 436 (671)
....++..+.. +++|+.|+++++.........+.. +++|++|++++ +.
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~-n~ 453 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSN------CSELVSLHLSFNYLSGTIPSSLGS------LSKLRDLKLWL-NM 453 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGG------CTTCCEEECCSSEEESCCCGGGGG------CTTCCEEECCS-SC
T ss_pred hhhhcccCCccEEECCCCccccccCHHHhc------CCCCCEEECcCCcccCcccHHHhc------CCCCCEEECCC-Cc
Confidence 33333333332 555566665554322222222222 56677777766 35
Q ss_pred CccCCCC---CCCCccEEEEeccCCc---CccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecC
Q 005896 437 LSGELPG---LLPSLETLVVRKCGKL---VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLC 510 (671)
Q Consensus 437 l~~~lp~---~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~ 510 (671)
+++.+|. .+++|+.|++++|... +..+..+++|++|++++|... +.+|..+..+++|+.|++++|
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~---------~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT---------GEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC---------SCCCGGGGGCTTCCEEECCSS
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC---------CcCChHHhcCCCCCEEECCCC
Confidence 5555553 4566777777766432 344555677777777776632 466777778888888888888
Q ss_pred CCCcccCCC-CCCCCcceEEEccCcCccccccc-----------------------------------------------
Q 005896 511 PNLVSFPEE-GFPTNLTTLVIGNFKLYKTLVQW----------------------------------------------- 542 (671)
Q Consensus 511 ~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~----------------------------------------------- 542 (671)
.....+|.. ..+++|++|++++|+..+.+|..
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 555456544 45678888888777655433321
Q ss_pred ----------------------ccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCc-cCCccCCCC
Q 005896 543 ----------------------GLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLI-FLSSMGFQN 599 (671)
Q Consensus 543 ----------------------~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~l~~ 599 (671)
.+..+++|+.|++++ |...+.+|. ++ ..+++|+.|++++ +.++ .+| ..+.+
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~-N~l~g~ip~-~l--~~l~~L~~L~Ls~-N~l~g~ip-~~l~~ 678 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY-NMLSGYIPK-EI--GSMPYLFILNLGH-NDISGSIP-DEVGD 678 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS-SCCBSCCCG-GG--GGCTTCCEEECCS-SCCCSCCC-GGGGG
T ss_pred hccccccccccccceecccCchhhhccccccEEECcC-CcccccCCH-HH--hccccCCEEeCcC-CccCCCCC-hHHhC
Confidence 233456778888887 444456666 44 5677888888888 4455 666 77888
Q ss_pred CCccCeEeecCCCCCCcCCC-CCCCCCccEEEEeCCh
Q 005896 600 LTSLQYLRIGNCPNLTSFPE-VGLPSSLLELHIYGCP 635 (671)
Q Consensus 600 l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~c~ 635 (671)
+++|++|++++|+....+|. ...+++|++|++++|+
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 88888888888844445665 2346788888888875
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.8e-41 Score=370.71 Aligned_cols=523 Identities=16% Similarity=0.120 Sum_probs=363.9
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-Cc
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PI 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~ 151 (671)
.+..++++.+..+.+... .+..|.++++|++|.+.+ |.+ ..+.+..|.++++|++|+|++|.+..+ |.
T Consensus 31 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~---------n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTR---------CQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp SCTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTT---------CCC-CEECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred CCCcCcEEEccCCccCcC-ChhHhccCccceEEECCC---------Ccc-ceeChhhccCccccCeeeCCCCcccccChh
Confidence 566788888888776553 356778888888888888 433 346667788888888888888888655 56
Q ss_pred ccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCcccccc--chhhhccCcceEEeecCCccccccCccCCCCC
Q 005896 152 PFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKL--PQEMRNLINLRHLDIRGAKLLKEMPFGMKELN 228 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~ 228 (671)
.|+.+++|++|++++|.++.+ |..++++++|++|++++| .+..+ |. +..+++|++|++++|.+.+..|..++.++
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCccc-ccCCcccCEEEcccCcccccChhhhhhhc
Confidence 788888888888888888877 677888888888888888 66654 44 55588888888888884433345577888
Q ss_pred CCC--ccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHH
Q 005896 229 KLQ--TLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEE 306 (671)
Q Consensus 229 ~L~--~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 306 (671)
+|+ .|++..+..............|+.+. +.... ..+..+..+.++....+........... ....
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~-------l~~~~----~~~~~~~~l~~~~l~~l~~~~~~~~~~~-~i~~ 245 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLN-------FGGTQ----NLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISP 245 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEE-------CTTCS----CHHHHHHHTTTCEEEEEECCCCTTSCCC-CCCG
T ss_pred ccceeEEecCCCccCccChhHhhhccccccc-------cCCch----hHHHHhhhccccchhheechhhcccccc-ccCh
Confidence 888 55555444433222122222222221 11111 1122233333443333333222111000 0011
Q ss_pred HHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccC
Q 005896 307 KVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYG 386 (671)
Q Consensus 307 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 386 (671)
..+..+.. .+|+.|+++++....++..... .+++|++|++++|.+...++.++.+++|++|++++|......+..+..
T Consensus 246 ~~~~~l~~-~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 246 AVFEGLCE-MSVESINLQKHYFFNISSNTFH-CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGGGGGGG-SEEEEEECTTCCCSSCCTTTTT-TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred hHhchhhc-CceeEEEeecCccCccCHHHhc-cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhc
Confidence 12222222 2788999999998888766443 689999999999998754448899999999999999765544444444
Q ss_pred CCccCCCCCcceeeccCcccccccccc-cCCCCccCCCCccceeeEecCCCCccCC--C---CCCCCccEEEEeccCCc-
Q 005896 387 EGFSMPFPSLEILSFESLPEWQHWNTN-IKGNEPVEIFPRLQELSIAECPQLSGEL--P---GLLPSLETLVVRKCGKL- 459 (671)
Q Consensus 387 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~l--p---~~l~~L~~L~l~~~~~l- 459 (671)
+++|+.|+++++......... +.. +++|++|++++ +.+++.. | ..+++|++|++++|...
T Consensus 324 ------l~~L~~L~l~~n~~~~~~~~~~~~~------l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 324 ------FPSLTHLSIKGNTKRLELGTGCLEN------LENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp ------CTTCSEEECCSCSSCCBCCSSTTTT------CTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred ------cCcCCEEECCCCCcccccchhhhhc------cCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 899999999988654333222 232 89999999999 4666432 3 46899999999999643
Q ss_pred --CccCCCCCCcceEEeccCCCcccccCCCCCccCc-ccCCCCCCCCeeEeecCCCCcccCCC-CCCCCcceEEEccCcC
Q 005896 460 --VVPLSSYPMLCRLEVDECKELVDICGCDKLEALP-NDMHKLNSLRDLGIQLCPNLVSFPEE-GFPTNLTTLVIGNFKL 535 (671)
Q Consensus 460 --~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~ 535 (671)
...+..+++|++|++++|... ...| ..+..+++|++|++++|......|.. ..+++|++|++++|+.
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTRLK---------VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCCEE---------CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred CCHHHhcCCccCCeEECCCCcCC---------CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 456778999999999999833 2223 34789999999999999543333332 5679999999998876
Q ss_pred cccc-c-ccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCC
Q 005896 536 YKTL-V-QWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPN 613 (671)
Q Consensus 536 l~~~-~-~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 613 (671)
.+.. + ...+..+++|+.|++++ +.+..++...+ ..+++|++|++++ ++++.++...+.++++| +|++++| .
T Consensus 462 ~~~~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~ 534 (606)
T 3t6q_A 462 PKGNIQKTNSLQTLGRLEILVLSF--CDLSSIDQHAF--TSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-H 534 (606)
T ss_dssp GGGEECSSCGGGGCTTCCEEECTT--SCCCEECTTTT--TTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-C
T ss_pred CccccccchhhccCCCccEEECCC--CccCccChhhh--ccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-c
Confidence 5522 2 23578899999999998 56666654244 5789999999999 56887766889999999 9999999 7
Q ss_pred CCcCCCCC--CCCCccEEEEeCChhhHHHHhhCCCCCCCce
Q 005896 614 LTSFPEVG--LPSSLLELHIYGCPNLKKACKRDQGKEWPKI 652 (671)
Q Consensus 614 l~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 652 (671)
++.+++.. .+++|+.|++++|| +.+.|...+..+|.+-
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~-~~c~c~~~~~~~w~~~ 574 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNP-LDCTCSNIYFLEWYKE 574 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCC-EECSGGGHHHHHHHHH
T ss_pred ccccCHhhcccCCCCCEEeCCCCC-ccccCCcHHHHHHHHh
Confidence 77776632 36899999999998 8888887777777543
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=364.26 Aligned_cols=519 Identities=16% Similarity=0.136 Sum_probs=361.4
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-Cc
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PI 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~ 151 (671)
.+..++.+.+..+.+.. ..+..|.++++|++|.+.+ +.....+.+..|..+++|++|+|++|.+..+ |.
T Consensus 22 lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~---------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGS---------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECT---------TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCC---------CCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 56788999998887655 3356788899999999988 4444667678889999999999999998766 67
Q ss_pred ccCCCCccceeecCCCcccc-cchh--hhccccCcEEecCCCcccccc--chhhhccCcceEEeecCCccccccCccCCC
Q 005896 152 PFEDLRLLRFLNLADTDIRS-LPES--KCKLLNLEILILRNCSRLIKL--PQEMRNLINLRHLDIRGAKLLKEMPFGMKE 226 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~L~~~~~~~~~p~~l~~ 226 (671)
.|+.+++|++|+|++|.++. +|.. ++++++|++|+|++| .+..+ +..++++++|++|++++|.+.+..|..+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 88999999999999999884 5554 889999999999998 55544 346889999999999999866666667777
Q ss_pred C--CCCCccceeEecCCccc-ccccCchh------hHhcCCccEEecccCCCChhhhhhhcc---CCCCCCCceEEEEec
Q 005896 227 L--NKLQTLSNFIVGKGECA-SGLEDLKS------LNLLCDELCIAGLENVNSPQNAREAAL---REKHNLEALTLEWGS 294 (671)
Q Consensus 227 l--~~L~~L~~~~~~~~~~~-~~~~~l~~------L~~L~~~l~~~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~ 294 (671)
+ ++|+.|++..+...... ..+..+.. |+.|. +.. +......+..+ .....++.+.+..+.
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~-------Ls~-n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD-------VSG-NGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEB-------CSS-CCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEe-------cCC-CcCchhHHHHHHhhcCcccccceeccccc
Confidence 7 78888887766544311 11222221 22221 111 11111111111 122345555554222
Q ss_pred CCCCCCchhhHHHHhccCCC--CCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEE
Q 005896 295 QSDSPRDAVLEEKVLDTLQP--HERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAV 371 (671)
Q Consensus 295 ~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L 371 (671)
.................+.. .++|+.|+++++....++..... .+++|+.|++++|.+.+..+ .++.+++|++|++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 11100000000011112222 36899999999987766543332 68999999999999887766 7889999999999
Q ss_pred eCCCCceeccccccCCCccCCCCCcceeeccCccccccc-ccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccE
Q 005896 372 KGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHW-NTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLET 450 (671)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~ 450 (671)
++|......+..+.+ +++|+.|+++++.. ..+ ...+.+ +++|++|++++ +.++ .++. +++|+.
T Consensus 322 s~N~l~~~~~~~~~~------l~~L~~L~L~~N~i-~~~~~~~~~~------l~~L~~L~Ls~-N~l~-~i~~-~~~L~~ 385 (844)
T 3j0a_A 322 SYNLLGELYSSNFYG------LPKVAYIDLQKNHI-AIIQDQTFKF------LEKLQTLDLRD-NALT-TIHF-IPSIPD 385 (844)
T ss_dssp ESCCCSCCCSCSCSS------CTTCCEEECCSCCC-CCCCSSCSCS------CCCCCEEEEET-CCSC-CCSS-CCSCSE
T ss_pred CCCCCCccCHHHhcC------CCCCCEEECCCCCC-CccChhhhcC------CCCCCEEECCC-CCCC-cccC-CCCcch
Confidence 999765444544544 89999999998753 332 223333 89999999999 5777 5554 889999
Q ss_pred EEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcc--cCCCCCCCCeeEeecCCCCcccCCC---CCCCCc
Q 005896 451 LVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPN--DMHKLNSLRDLGIQLCPNLVSFPEE---GFPTNL 525 (671)
Q Consensus 451 L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~--~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L 525 (671)
|++++|... ..-....+++.|++++|. +..++. .+..+++|+.|++++| .++.++.. ..+++|
T Consensus 386 L~l~~N~l~-~l~~~~~~l~~L~ls~N~----------l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L 453 (844)
T 3j0a_A 386 IFLSGNKLV-TLPKINLTANLIHLSENR----------LENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSL 453 (844)
T ss_dssp EEEESCCCC-CCCCCCTTCCEEECCSCC----------CCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTC
T ss_pred hccCCCCcc-cccccccccceeecccCc----------cccCchhhhhhcCCccceeeCCCC-cccccccccccccCCcc
Confidence 999998654 222336788999999988 344332 3468999999999999 45544332 346899
Q ss_pred ceEEEccCcCcc----cccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCC
Q 005896 526 TTLVIGNFKLYK----TLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLT 601 (671)
Q Consensus 526 ~~L~l~~~~~l~----~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~ 601 (671)
+.|++++|.... ...+..+.++++|+.|++++ +.++.++...+ ..+++|++|++++ |+++.++...+. +
T Consensus 454 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH--NYLNSLPPGVF--SHLTALRGLSLNS-NRLTVLSHNDLP--A 526 (844)
T ss_dssp CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH--HHHTTCCTTSS--SSCCSCSEEEEES-CCCSSCCCCCCC--S
T ss_pred ccccCCCCccccccccccchhhhcCcccccEEECCC--CcccccChhHc--cchhhhheeECCC-CCCCccChhhhh--c
Confidence 999998876432 23334578899999999998 67888877444 6789999999999 789999855554 8
Q ss_pred ccCeEeecCCCCCCcCCCCCCCCCccEEEEeCChhhHHHHhhCCCCCC
Q 005896 602 SLQYLRIGNCPNLTSFPEVGLPSSLLELHIYGCPNLKKACKRDQGKEW 649 (671)
Q Consensus 602 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 649 (671)
+|+.|++++| .++.+++. .+++|+.|+++++| +.|.|...+..+|
T Consensus 527 ~L~~L~Ls~N-~l~~~~~~-~~~~L~~l~l~~Np-~~C~c~~~~f~~~ 571 (844)
T 3j0a_A 527 NLEILDISRN-QLLAPNPD-VFVSLSVLDITHNK-FICECELSTFINW 571 (844)
T ss_dssp CCCEEEEEEE-CCCCCCSC-CCSSCCEEEEEEEC-CCCSSSCCSHHHH
T ss_pred cccEEECCCC-cCCCCChh-HhCCcCEEEecCCC-cccccccHHHHHH
Confidence 9999999999 67776654 45799999999987 6666655444444
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-37 Score=346.47 Aligned_cols=488 Identities=17% Similarity=0.107 Sum_probs=286.6
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-CcccCCCCccceeecCCCcccccch-hhh
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PIPFEDLRLLRFLNLADTDIRSLPE-SKC 177 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~n~i~~lp~-~i~ 177 (671)
+++++|.+.+ +.+ ..+++..|.++++|++|++++|.+..+ |..|+++++|++|+|++|.++.+|. .|+
T Consensus 25 ~~l~~L~Ls~---------n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTH---------NQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCS---------SCC-CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEECCC---------CCC-CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 7999999999 443 456677899999999999999999776 5678999999999999999999976 699
Q ss_pred ccccCcEEecCCCccccccc-hhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCccccc---ccCchhh
Q 005896 178 KLLNLEILILRNCSRLIKLP-QEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASG---LEDLKSL 253 (671)
Q Consensus 178 ~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~---~~~l~~L 253 (671)
++++|++|++++| .+..+| ..|+++++|++|++++|.+.+..|..++++++|++|++..+........ ...+.+|
T Consensus 95 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 9999999999999 677666 5689999999999999996666667799999999999877665432210 1122334
Q ss_pred HhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccC-C
Q 005896 254 NLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARF-P 332 (671)
Q Consensus 254 ~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p 332 (671)
+.|. + ..+......+..+..+.+|+.|++..+.... .........+ ..++|+.|+++++....+ |
T Consensus 174 ~~L~----L----~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~ 239 (680)
T 1ziw_A 174 KKLE----L----SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP-----SLTEKLCLEL-ANTSIRNLSLSNSQLSTTSN 239 (680)
T ss_dssp SEEE----C----TTCCCCCBCTTGGGGSSEECEEECTTCCCHH-----HHHHHHHHHH-TTSCCCEEECTTSCCCEECT
T ss_pred cEEE----C----CCCcccccChhhhhhhhhhhhhhccccccCh-----hhHHHHHHHh-hhccccEEEccCCcccccCh
Confidence 3332 1 1122223333445556666666554443310 0000000001 124555555555544333 2
Q ss_pred CCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccC-------------------------
Q 005896 333 PWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYG------------------------- 386 (671)
Q Consensus 333 ~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~------------------------- 386 (671)
.++.....++|++|++++|.+.+..+ .++.+++|++|++++|......+..+.+
T Consensus 240 ~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc
Confidence 22221011235555555555544443 4555555555555555443333333322
Q ss_pred --CCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCcc-CCCC------CCCCccEEEEeccC
Q 005896 387 --EGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSG-ELPG------LLPSLETLVVRKCG 457 (671)
Q Consensus 387 --~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~lp~------~l~~L~~L~l~~~~ 457 (671)
......+++|+.|+++++.........+.+ +++|++|++++| .+.. .++. ..++|+.|++++|.
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~Ls~n-~~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG------LINLKYLSLSNS-FTSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT------CTTCCEEECTTC-BSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred cChhhcccCCCCCEEECCCCccCCCChhHhcc------ccCCcEEECCCC-chhhhhcchhhhcccccCcCceEECCCCC
Confidence 001112444444444443321111111111 455555555553 1110 1111 11355556655554
Q ss_pred Cc---CccCCCCCCcceEEeccCCCcccccCCCCCccCc-ccCCCCCCCCeeEeecCCCCcccCCC--------------
Q 005896 458 KL---VVPLSSYPMLCRLEVDECKELVDICGCDKLEALP-NDMHKLNSLRDLGIQLCPNLVSFPEE-------------- 519 (671)
Q Consensus 458 ~l---~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~-------------- 519 (671)
.. ...+..+++|+.|++++|... +.+| ..+..+++|++|++++|. +..++..
T Consensus 393 l~~~~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 393 ISKIESDAFSWLGHLEVLDLGLNEIG---------QELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCE---------EECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECT
T ss_pred CCeEChhhhhCCCCCCEEeCCCCcCc---------cccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhc
Confidence 32 234556777777777777632 2344 356777888888888774 3222211
Q ss_pred --------------CCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccc------cccCCCCcC
Q 005896 520 --------------GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEI------GMTLPTSLT 579 (671)
Q Consensus 520 --------------~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~------~~~~~~~L~ 579 (671)
..+++|+.|++++|+ ++.+++..+.++++|+.|++++ +.+..++...+ ....+++|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred cccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCC--CCccccchhhccCCcchhhcCCCCCC
Confidence 234566666665543 4455555566777777777776 45554432110 013457777
Q ss_pred eEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCC--CCCCccEEEEeCC
Q 005896 580 HLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVG--LPSSLLELHIYGC 634 (671)
Q Consensus 580 ~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c 634 (671)
+|++++ ++++.+|...+..+++|++|++++| .++.+|... .+++|+.|++++|
T Consensus 540 ~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 540 ILNLES-NGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp EEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCC-CCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 777777 5677777556777777788888777 677777643 3577788888777
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=342.36 Aligned_cols=488 Identities=20% Similarity=0.182 Sum_probs=267.7
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-c
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-I 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~ 151 (671)
.+..++++.+..+.+... ....|.++++|++|.+.+ |.+ ..+++.+|.++++|++|++++|.+..+| .
T Consensus 26 l~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~---------n~i-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSR---------CEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp SCSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTT---------CCC-CEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ccccccEEEccCCccCcc-ChhHhhCCCCceEEECCC---------CcC-CccCcccccCchhCCEEeCcCCcCCccCHh
Confidence 445666777766655442 234566677777777766 322 3445556677777777777777766554 5
Q ss_pred ccCCCCccceeecCCCcccccch-hhhccccCcEEecCCCcccc--ccchhhhccCcceEEeecCCccccccCccCCCCC
Q 005896 152 PFEDLRLLRFLNLADTDIRSLPE-SKCKLLNLEILILRNCSRLI--KLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELN 228 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~ 228 (671)
.|..+++|++|++++|.++.+|. .++++++|++|++++| .+. .+|..++++++|++|++++|.+.+..|..++.++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 56677777777777777776643 5667777777777776 444 3566677777777777777763333334455555
Q ss_pred CC----CccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhh
Q 005896 229 KL----QTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVL 304 (671)
Q Consensus 229 ~L----~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (671)
+| +.|++..+...... +..+... +|+.|++++|..... .
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~-------------------------------~~~~~~~-~L~~L~l~~n~~~~~-----~ 216 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQ-------------------------------PGAFKEI-RLHKLTLRNNFDSLN-----V 216 (570)
T ss_dssp TCTTCCCEEECTTCCCCEEC-------------------------------TTTTTTC-EEEEEEEESCCSCTT-----H
T ss_pred ccchhhhhcccCCCCceecC-------------------------------HHHhccC-cceeEeccccccccc-----c
Confidence 55 44443333222211 1112222 455555544422100 0
Q ss_pred HHHHhccCCCCCCCcEEEEeccC------CccCCCCCCCCCCC--CccEEEEeCC-CCCCCCC-CCCCCCCccEEEEeCC
Q 005896 305 EEKVLDTLQPHERIKELAIKHYG------GARFPPWIGQHSFS--EMKVLKLENC-DNCAALP-SLGLMSSLKILAVKGL 374 (671)
Q Consensus 305 ~~~~~~~l~~~~~L~~L~l~~~~------~~~~p~~~~~~~l~--~L~~L~l~~~-~~~~~~~-~l~~l~~L~~L~L~~~ 374 (671)
.... +..+.+++.+.+.... ...++..... .++ .++.++++++ .+.+..+ .++.+++|++|++++|
T Consensus 217 ~~~~---~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~-~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 217 MKTC---IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE-GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292 (570)
T ss_dssp HHHH---HHTTTTCEEEEEEEEECCCCSSCEECCTTTTG-GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC
T ss_pred hhhh---hcCccccceeeeccccccCchhhhhcchhhhc-cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc
Confidence 0011 1112222222221110 0111111110 111 2344444444 2223333 4455555555555555
Q ss_pred CCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCC-CCCCCccEEEE
Q 005896 375 KKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP-GLLPSLETLVV 453 (671)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l 453 (671)
.. ..++..+.. + +|+.|++.++... .+ +...+++|++|++++| .+.+.++ ..+++|++|++
T Consensus 293 ~l-~~l~~~~~~------~-~L~~L~l~~n~~~-~l--------~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 293 TI-ERVKDFSYN------F-GWQHLELVNCKFG-QF--------PTLKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp EE-CSCCBCCSC------C-CCSEEEEESCBCS-SC--------CBCBCSSCCEEEEESC-BSCCBCCCCBCTTCCEEEC
T ss_pred cc-hhhhhhhcc------C-CccEEeeccCccc-cc--------CcccccccCEEeCcCC-ccccccccccCCCCCEEeC
Confidence 32 223322221 3 5555555544321 11 1111666677777664 3333444 45667777777
Q ss_pred eccCCc-----CccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCC---CCCCCCc
Q 005896 454 RKCGKL-----VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPE---EGFPTNL 525 (671)
Q Consensus 454 ~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L 525 (671)
++|... ...+..+++|++|++++|. +..+|..+..+++|++|++++|. ++..+. ...+++|
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~----------l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNG----------VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCS----------EEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTC
T ss_pred cCCccCccccccccccccCccCEEECCCCc----------cccccccccccCCCCEEEccCCc-cccccchhhhhcCCCC
Confidence 766543 2334567788888888776 44555557778888888888874 333322 2456788
Q ss_pred ceEEEccCcCcccccccccCCCCCcCeEEecccCCCc-ccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccC
Q 005896 526 TTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEA-ECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQ 604 (671)
Q Consensus 526 ~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~-~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~ 604 (671)
++|++++|.... ..+..+.++++|++|++++ |... ..+|. .+ ..+++|++|++++ +.++.++...+..+++|+
T Consensus 424 ~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~-n~l~~~~~p~-~~--~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 424 IYLDISHTHTRV-AFNGIFNGLSSLEVLKMAG-NSFQENFLPD-IF--TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp CEEECTTSCCEE-CCTTTTTTCTTCCEEECTT-CEEGGGEECS-CC--TTCTTCCEEECTT-SCCCEECTTTTTTCTTCC
T ss_pred CEEeCcCCcccc-cchhhhhcCCcCcEEECcC-CcCccccchh-hh--hcccCCCEEECCC-CccccCChhhhhcccCCC
Confidence 888887765433 3334577888888888887 4322 24554 33 4678888888888 457766447788888888
Q ss_pred eEeecCCCCCCcCCCC--CCCCCccEEEEeCChhhHHHHhhCCCC-CCC
Q 005896 605 YLRIGNCPNLTSFPEV--GLPSSLLELHIYGCPNLKKACKRDQGK-EWP 650 (671)
Q Consensus 605 ~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~~ 650 (671)
+|++++| .++.++.. ..+++|+.|++++|+ +.+.|...+.. +|.
T Consensus 498 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~wl 544 (570)
T 2z63_A 498 VLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP-WDCSCPRIDYLSRWL 544 (570)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-BCCCTTTTHHHHHHH
T ss_pred EEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc-ccCCCcchHHHHHHH
Confidence 8888888 67777653 336788888888876 55554433332 453
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-36 Score=336.43 Aligned_cols=481 Identities=15% Similarity=0.107 Sum_probs=355.3
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-c
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-I 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~ 151 (671)
....++++.+..+.+.. ..+..|.++++|++|.+.+ |.+ ..+.+..|.++++|++|++++|.+..+| .
T Consensus 54 ~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~---------n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 122 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTG---------NPI-QSFSPGSFSGLTSLENLVAVETKLASLESF 122 (606)
T ss_dssp TCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTT---------CCC-CCCCTTSSTTCTTCCEEECTTSCCCCSSSS
T ss_pred CCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCC---------Ccc-cccChhhcCCcccCCEEEccCCcccccccc
Confidence 34678999998887655 3356788999999999999 443 4566778999999999999999998887 7
Q ss_pred ccCCCCccceeecCCCccc--ccchhhhccccCcEEecCCCcccccc-chhhhccCcce----EEeecCCccccccCccC
Q 005896 152 PFEDLRLLRFLNLADTDIR--SLPESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLR----HLDIRGAKLLKEMPFGM 224 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~----~L~L~~~~~~~~~p~~l 224 (671)
.++.+++|++|++++|.++ .+|..++++++|++|++++| .+..+ |..++.+++|+ +|++++|. +..+|...
T Consensus 123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~ 200 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQA 200 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTT
T ss_pred ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccCCC-cceeCccc
Confidence 7999999999999999998 47999999999999999999 66554 55677777665 89999999 77788776
Q ss_pred CCCCCCCccceeEecCCc--ccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCC--CCCceEEEE-ecCCCCC
Q 005896 225 KELNKLQTLSNFIVGKGE--CASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKH--NLEALTLEW-GSQSDSP 299 (671)
Q Consensus 225 ~~l~~L~~L~~~~~~~~~--~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~-~~~~~~~ 299 (671)
....+|+.|++..+.... .+..+..+..++.+ .+..................+.++. .++.+++.. +.+.
T Consensus 201 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l--~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~--- 275 (606)
T 3vq2_A 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH--RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS--- 275 (606)
T ss_dssp TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEE--EEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC---
T ss_pred ccCceeeeeeccCCccchhHHHHHhccccccccc--cccccccccCCcccccChHHhhhhhhccHhheecccccccc---
Confidence 666699999987775432 12224444444433 2333333222222211122222222 344444422 2221
Q ss_pred CchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCcee
Q 005896 300 RDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKS 379 (671)
Q Consensus 300 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 379 (671)
.....+..+++|+.|++.++....+| ++. .+++|++|++++|.+ +.+|.+ .+++|++|++++|.....
T Consensus 276 -------~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~--~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 276 -------DDIVKFHCLANVSAMSLAGVSIKYLE-DVP--KHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp -------GGGGSCGGGTTCSEEEEESCCCCCCC-CCC--TTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEE
T ss_pred -------ccccccccCCCCCEEEecCccchhhh-hcc--ccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccc
Confidence 11222667789999999999998888 555 589999999999998 777777 999999999999976655
Q ss_pred ccccccCCCccCCCCCcceeeccCccccccc--ccccCCCCccCCCCccceeeEecCCCCccCCC---CCCCCccEEEEe
Q 005896 380 IESEVYGEGFSMPFPSLEILSFESLPEWQHW--NTNIKGNEPVEIFPRLQELSIAECPQLSGELP---GLLPSLETLVVR 454 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~ 454 (671)
. .+. .+++|+.|+++++...... ...+.+ +++|++|++++| .++ .+| ..+++|+.|+++
T Consensus 344 ~--~~~------~l~~L~~L~ls~n~l~~~~~~~~~~~~------~~~L~~L~L~~n-~l~-~~~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 344 F--KKV------ALPSLSYLDLSRNALSFSGCCSYSDLG------TNSLRHLDLSFN-GAI-IMSANFMGLEELQHLDFQ 407 (606)
T ss_dssp C--CCC------CCTTCCEEECCSSCEEEEEECCHHHHC------CSCCCEEECCSC-SEE-EECCCCTTCTTCCEEECT
T ss_pred h--hhc------cCCCCCEEECcCCccCCCcchhhhhcc------CCcccEeECCCC-ccc-cchhhccCCCCCCeeECC
Confidence 4 222 3899999999987532221 222222 899999999995 676 455 467899999999
Q ss_pred ccCCcC----ccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcc-cCCC-CCCCCcceE
Q 005896 455 KCGKLV----VPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVS-FPEE-GFPTNLTTL 528 (671)
Q Consensus 455 ~~~~l~----~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~-~~~~-~~~~~L~~L 528 (671)
+|.... ..+..+++|++|++++|... ...|..+..+++|++|++++|..... +|.. ..+++|++|
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTK---------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCE---------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCC---------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 986432 46778999999999999844 34667789999999999999954432 4443 567999999
Q ss_pred EEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCC-ccCeEe
Q 005896 529 VIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLT-SLQYLR 607 (671)
Q Consensus 529 ~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~-~L~~L~ 607 (671)
++++|. ++.+++..+.++++|++|++++ +.+..++...+ ..+++|++|++++ ++++.+| ..+..++ +|++|+
T Consensus 479 ~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~--~~l~~L~~L~l~~-N~l~~~p-~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 479 DLSKCQ-LEQISWGVFDTLHRLQLLNMSH--NNLLFLDSSHY--NQLYSLSTLDCSF-NRIETSK-GILQHFPKSLAFFN 551 (606)
T ss_dssp ECTTSC-CCEECTTTTTTCTTCCEEECCS--SCCSCEEGGGT--TTCTTCCEEECTT-SCCCCEE-SCGGGSCTTCCEEE
T ss_pred ECCCCc-CCccChhhhcccccCCEEECCC--CcCCCcCHHHc--cCCCcCCEEECCC-CcCcccC-HhHhhhcccCcEEE
Confidence 998875 5555555689999999999999 56666543244 5789999999999 5699999 5588887 699999
Q ss_pred ecCCCCCC
Q 005896 608 IGNCPNLT 615 (671)
Q Consensus 608 l~~c~~l~ 615 (671)
+++|+-..
T Consensus 552 l~~N~~~c 559 (606)
T 3vq2_A 552 LTNNSVAC 559 (606)
T ss_dssp CCSCCCCC
T ss_pred ccCCCccc
Confidence 99996543
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-37 Score=340.22 Aligned_cols=481 Identities=16% Similarity=0.124 Sum_probs=357.6
Q ss_pred CCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-Ccc
Q 005896 74 FERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PIP 152 (671)
Q Consensus 74 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~ 152 (671)
-...+.+.+..+.+.. ..+..|.++++|++|.+.+ |.+ ....+..|.++++|++|++++|.+..+ |..
T Consensus 56 l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~---------n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~ 124 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTA---------NPL-IFMAETALSGPKALKHLFFIQTGISSIDFIP 124 (606)
T ss_dssp CTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTT---------CCC-SEECTTTTSSCTTCCEEECTTSCCSCGGGSC
T ss_pred CccceEEECCCCccce-eChhhccCccccCeeeCCC---------Ccc-cccChhhhcccccccEeeccccCcccCCcch
Confidence 4578999998887655 3457789999999999999 444 456677899999999999999999887 577
Q ss_pred cCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCcccccc-chhhhccCcce--EEeecCCccccccCccCCCCC
Q 005896 153 FEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLR--HLDIRGAKLLKEMPFGMKELN 228 (671)
Q Consensus 153 ~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~--~L~L~~~~~~~~~p~~l~~l~ 228 (671)
++.+++|++|++++|.++.++ ..+..+++|++|++++| .+..+ |..++.+++|+ .|++++|. +..+++......
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~ 202 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDSA 202 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCC-CCEECTTTTTTC
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCc-cCccChhHhhhc
Confidence 999999999999999999762 44555999999999999 66655 56789999999 89999999 556666655667
Q ss_pred CCCccceeEecCCcccccccCchhhHhcCC-ccEEecccCCCChhhhhhhccCCCC--CCCceEEEEecCCCCCCchhhH
Q 005896 229 KLQTLSNFIVGKGECASGLEDLKSLNLLCD-ELCIAGLENVNSPQNAREAALREKH--NLEALTLEWGSQSDSPRDAVLE 305 (671)
Q Consensus 229 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~-~l~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~ 305 (671)
+|+.|++..+.... ..+..+..+.. .+......... ........+.++. +|+.|++++|.+....+
T Consensus 203 ~L~~L~l~~~~~~~-----~~~~~l~~~~l~~l~~~~~~~~~-~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~----- 271 (606)
T 3t6q_A 203 VFQSLNFGGTQNLL-----VIFKGLKNSTIQSLWLGTFEDMD-DEDISPAVFEGLCEMSVESINLQKHYFFNISS----- 271 (606)
T ss_dssp EEEEEECTTCSCHH-----HHHHHTTTCEEEEEECCCCTTSC-CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT-----
T ss_pred cccccccCCchhHH-----HHhhhccccchhheechhhcccc-ccccChhHhchhhcCceeEEEeecCccCccCH-----
Confidence 88888765443110 11111111100 11111111100 0011112233332 78899998888744332
Q ss_pred HHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccc
Q 005896 306 EKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEV 384 (671)
Q Consensus 306 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~ 384 (671)
..+..+++|+.|+++++....+|..+. .+++|++|++++|.+.+..| .++.+++|++|++++|.....++...
T Consensus 272 ----~~~~~l~~L~~L~l~~n~l~~lp~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 272 ----NTFHCFSGLQELDLTATHLSELPSGLV--GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp ----TTTTTCTTCSEEECTTSCCSCCCSSCC--SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ----HHhccccCCCEEeccCCccCCCChhhc--ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 235667999999999999999999887 59999999999999887766 78999999999999997765555442
Q ss_pred cCCCccCCCCCcceeeccCccccccc--ccccCCCCccCCCCccceeeEecCCCCccCCC---CCCCCccEEEEeccCCc
Q 005896 385 YGEGFSMPFPSLEILSFESLPEWQHW--NTNIKGNEPVEIFPRLQELSIAECPQLSGELP---GLLPSLETLVVRKCGKL 459 (671)
Q Consensus 385 ~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l 459 (671)
.+ .+++|+.|+++++...... ...+.+ +++|++|++++ +.+.+..| ..+++|++|++++|...
T Consensus 346 ~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~------l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 346 LE-----NLENLRELDLSHDDIETSDCCNLQLRN------LSHLQSLNLSY-NEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp TT-----TCTTCCEEECCSSCCCEEEESTTTTTT------CTTCCEEECCS-CSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred hh-----ccCcCCEEECCCCccccccCcchhccc------CCCCCEEECCC-CcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 22 2999999999987644332 222333 89999999999 46775555 35789999999998653
Q ss_pred ----CccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCc-ccCC---CCCCCCcceEEEc
Q 005896 460 ----VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLV-SFPE---EGFPTNLTTLVIG 531 (671)
Q Consensus 460 ----~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~-~~~~---~~~~~~L~~L~l~ 531 (671)
...+..+++|++|++++|... ...|..+..+++|++|++++|.... .++. ...+++|++|+++
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLD---------ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCB---------TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred CcccchhhhCcccCCEEECCCCccC---------CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 233778999999999999843 3446678899999999999995433 1222 2457899999998
Q ss_pred cCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCC
Q 005896 532 NFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNC 611 (671)
Q Consensus 532 ~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 611 (671)
+|. ++.+++..+.++++|++|++++ +.+..++...+ ..+++| +|++++ +.++.++...+..+++|++|++++|
T Consensus 485 ~n~-l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~l--~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 485 FCD-LSSIDQHAFTSLKMMNHVDLSH--NRLTSSSIEAL--SHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp TSC-CCEECTTTTTTCTTCCEEECCS--SCCCGGGGGGG--TTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CCc-cCccChhhhccccCCCEEECCC--CccCcCChhHh--Cccccc-EEECcC-CcccccCHhhcccCCCCCEEeCCCC
Confidence 875 5555555789999999999998 56666555344 577889 999999 6788888677889999999999999
Q ss_pred C
Q 005896 612 P 612 (671)
Q Consensus 612 ~ 612 (671)
+
T Consensus 558 ~ 558 (606)
T 3t6q_A 558 P 558 (606)
T ss_dssp C
T ss_pred C
Confidence 5
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.7e-37 Score=336.17 Aligned_cols=458 Identities=18% Similarity=0.191 Sum_probs=282.9
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccch-hhh
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLPE-SKC 177 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~-~i~ 177 (671)
++|++|.+.+ |.+ ..+++..|..+++|++|++++|.+..++ ..|+.+++|++|+|++|.++.+|. .++
T Consensus 26 ~~L~~L~Ls~---------n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSF---------NKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp TTCCEEECCS---------SCC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred CCccEEECcC---------Ccc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 5777777777 333 3444556777777777777777776655 567777777777777777776654 477
Q ss_pred ccccCcEEecCCCcccc--ccchhhhccCcceEEeecCCccccccCc-cCCCCCCCCccceeEecCCcccccccCchhhH
Q 005896 178 KLLNLEILILRNCSRLI--KLPQEMRNLINLRHLDIRGAKLLKEMPF-GMKELNKLQTLSNFIVGKGECASGLEDLKSLN 254 (671)
Q Consensus 178 ~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~ 254 (671)
++++|++|++++| .+. ..|..++++++|++|++++|...+.+|. .++++++|++|++..+.....
T Consensus 96 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----------- 163 (549)
T 2z81_A 96 PLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY----------- 163 (549)
T ss_dssp TCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-----------
T ss_pred cCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-----------
Confidence 7777777777777 555 3455677777777777777765666663 477777777777665543321
Q ss_pred hcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccC---
Q 005896 255 LLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARF--- 331 (671)
Q Consensus 255 ~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--- 331 (671)
.+..+..+++|+.|+++++..... .... +..+++|+.|+++++....+
T Consensus 164 --------------------~~~~l~~l~~L~~L~l~~n~~~~~------~~~~---~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 164 --------------------QSQSLKSIRDIHHLTLHLSESAFL------LEIF---ADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp --------------------CTTTTTTCSEEEEEEEECSBSTTH------HHHH---HHSTTTBSEEEEESCBCTTCCCC
T ss_pred --------------------ChhhhhccccCceEecccCccccc------chhh---HhhcccccEEEccCCcccccccc
Confidence 113345555666666666554110 0011 11245666677766665543
Q ss_pred CCCCCCCCCCCccEEEEeCCCCCCCCC-----CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCccc
Q 005896 332 PPWIGQHSFSEMKVLKLENCDNCAALP-----SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPE 406 (671)
Q Consensus 332 p~~~~~~~l~~L~~L~l~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 406 (671)
|..+.. .+++|+.|++++|.+.+..+ .+..+++|+.+++++|..................+++|+.|.+.++..
T Consensus 215 ~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 215 PLPVDE-VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp CCSSCC-CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred ccchhh-hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence 222222 46677777777776543211 245566777777777643221100000001123366777777766542
Q ss_pred cccc-ccccCCCCccCCCCccceeeEecCCCCccCCCC----CCCCccEEEEeccCCcC------ccCCCCCCcceEEec
Q 005896 407 WQHW-NTNIKGNEPVEIFPRLQELSIAECPQLSGELPG----LLPSLETLVVRKCGKLV------VPLSSYPMLCRLEVD 475 (671)
Q Consensus 407 l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~~~~l~------~~~~~~~~L~~L~l~ 475 (671)
-... ...+.. ....+++|++|++++ ++++ .+|. .+++|+.|++++|.... ..+..+++|++|+++
T Consensus 294 ~~~~~~~~l~~--~~~~~~~L~~L~l~~-n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 294 PQFYLFYDLST--VYSLLEKVKRITVEN-SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp SCGGGSCCCCH--HHHHSTTCCEEEEES-SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred chhhhcccchh--hhhhcccceEEEecc-Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence 2111 000000 001156788888888 4666 6772 47888888888886542 235667888888888
Q ss_pred cCCCcccccCCCCCccCc---ccCCCCCCCCeeEeecCCCCcccCCC-CCCCCcceEEEccCcCcccccccccCCCCCcC
Q 005896 476 ECKELVDICGCDKLEALP---NDMHKLNSLRDLGIQLCPNLVSFPEE-GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLK 551 (671)
Q Consensus 476 ~~~~~~~i~~~~~l~~l~---~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 551 (671)
+|. ++.++ ..+..+++|++|++++| .++.+|.. ..+++|++|++++|. ++.++.. -.++|+
T Consensus 370 ~N~----------l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~---~~~~L~ 434 (549)
T 2z81_A 370 QNH----------LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTC---IPQTLE 434 (549)
T ss_dssp TSC----------CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTT---SCTTCS
T ss_pred CCc----------ccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccch---hcCCce
Confidence 887 34443 23667888888888888 56666654 456788888887765 4444422 125788
Q ss_pred eEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCC--CCCCCccEE
Q 005896 552 HLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEV--GLPSSLLEL 629 (671)
Q Consensus 552 ~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L 629 (671)
.|++++ +.++.++. .+++|++|++++ ++++.+| ....+++|++|++++| .++.++.. ..+++|+.|
T Consensus 435 ~L~Ls~--N~l~~~~~------~l~~L~~L~Ls~-N~l~~ip--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 435 VLDVSN--NNLDSFSL------FLPRLQELYISR-NKLKTLP--DASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp EEECCS--SCCSCCCC------CCTTCCEEECCS-SCCSSCC--CGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEE
T ss_pred EEECCC--CChhhhcc------cCChhcEEECCC-CccCcCC--CcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEE
Confidence 888887 55655543 567888888888 5688887 2456888888888888 67776653 346788888
Q ss_pred EEeCChhhHHHH
Q 005896 630 HIYGCPNLKKAC 641 (671)
Q Consensus 630 ~l~~c~~l~~~~ 641 (671)
++++|+ +.+.|
T Consensus 503 ~l~~N~-~~~~~ 513 (549)
T 2z81_A 503 WLHTNP-WDCSC 513 (549)
T ss_dssp ECCSSC-BCCCH
T ss_pred EecCCC-ccCCC
Confidence 888776 44433
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-36 Score=340.02 Aligned_cols=502 Identities=19% Similarity=0.164 Sum_probs=357.6
Q ss_pred ccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCC-cccc-CcccCCCCccceeecCCCccccc-ch
Q 005896 98 EIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYR-IGEL-PIPFEDLRLLRFLNLADTDIRSL-PE 174 (671)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~ 174 (671)
-.+++++|.+++ |.+ ..+.+..|..+++|++|+|++|. +..+ |.+|.++++|++|+|++|.++.+ |.
T Consensus 22 lp~~l~~LdLs~---------N~i-~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSF---------NYI-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SCTTCCEEEEES---------CCC-CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCcCEEECCC---------CcC-CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 457999999999 544 45666789999999999999995 5667 68899999999999999999977 88
Q ss_pred hhhccccCcEEecCCCccccccchh--hhccCcceEEeecCCccccccC-ccCCCCCCCCccceeEecCCcccccccCch
Q 005896 175 SKCKLLNLEILILRNCSRLIKLPQE--MRNLINLRHLDIRGAKLLKEMP-FGMKELNKLQTLSNFIVGKGECASGLEDLK 251 (671)
Q Consensus 175 ~i~~L~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~ 251 (671)
.|+++++|++|+|++|.....+|.. ++++++|++|++++|.+.+..| ..++++++|++|++..+...... ...+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~--~~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC--EHELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC--SGGGH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC--HHHcc
Confidence 9999999999999999433446665 8999999999999999544434 46999999999998877654321 22333
Q ss_pred hh--HhcCCccEEecccCCCChhhhhhhccCCCC------CCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEE
Q 005896 252 SL--NLLCDELCIAGLENVNSPQNAREAALREKH------NLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAI 323 (671)
Q Consensus 252 ~L--~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 323 (671)
.+ ..|+ .+.+.. +......+..+..+. .|+.|++++|.+....+.. +........+..+.+
T Consensus 170 ~l~~~~L~-~L~L~~----n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~------~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 170 PLQGKTLS-FFSLAA----NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN------FSNAISKSQAFSLIL 238 (844)
T ss_dssp HHHHCSSC-CCEECC----SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG------GGGTSCSCCBSEEEC
T ss_pred cccCCccc-eEECCC----CccccccccchhhcCCccccCceeEEecCCCcCchhHHHH------HHhhcCcccccceec
Confidence 33 2222 222211 111112222233333 4888888888764433322 112223355666766
Q ss_pred eccCC---------ccC-CCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCccCC
Q 005896 324 KHYGG---------ARF-PPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMP 392 (671)
Q Consensus 324 ~~~~~---------~~~-p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 392 (671)
..+.. ... +..+.....++|+.|++++|.+.+..+ .++.+++|+.|++++|......+..+.+
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------ 312 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG------ 312 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT------
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC------
Confidence 52211 011 111221124789999999999877766 7899999999999999766655555555
Q ss_pred CCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCC---CCCCCccEEEEeccCCcCccCCCCCCc
Q 005896 393 FPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP---GLLPSLETLVVRKCGKLVVPLSSYPML 469 (671)
Q Consensus 393 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~~~~~~~~~L 469 (671)
+++|+.|+++++.........+.+ +++|++|++++ +.+.+..+ ..+++|+.|++++|... .++.+++|
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~L 383 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYG------LPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDNALT--TIHFIPSI 383 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSS------CTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEETCCSC--CCSSCCSC
T ss_pred CCCCCEEECCCCCCCccCHHHhcC------CCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCCCCCC--cccCCCCc
Confidence 899999999988643332344444 89999999999 47773333 35799999999998754 45558999
Q ss_pred ceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCC---CCCCCcceEEEccCcCcccccccccCC
Q 005896 470 CRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEE---GFPTNLTTLVIGNFKLYKTLVQWGLHR 546 (671)
Q Consensus 470 ~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~ 546 (671)
+.|++++|+ +..+|.. ..+++.|++++| .++.++.. ..+++|+.|++++|+.....+...+..
T Consensus 384 ~~L~l~~N~----------l~~l~~~---~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 384 PDIFLSGNK----------LVTLPKI---NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp SEEEEESCC----------CCCCCCC---CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred chhccCCCC----------ccccccc---ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 999999998 4566653 568999999999 56655442 367899999998887554333334667
Q ss_pred CCCcCeEEecccCCCcccCCccc---ccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCCCC
Q 005896 547 LTSLKHLWIAVSDDEAECFPDEE---IGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLP 623 (671)
Q Consensus 547 l~~L~~L~l~~~c~~~~~i~~~~---~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 623 (671)
+++|+.|++++ +.+..++... .....+++|++|++++ ++++.++...+..+++|++|++++| .++.+|...++
T Consensus 450 ~~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 525 (844)
T 3j0a_A 450 NPSLEQLFLGE--NMLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP 525 (844)
T ss_dssp CTTCCBCEEES--CCCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC
T ss_pred CCccccccCCC--CccccccccccchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCCC-CCCccChhhhh
Confidence 89999999998 5665433211 0114578999999999 6799998778999999999999999 89999987778
Q ss_pred CCccEEEEeCChhhHHHHhhCCCCCCCceeccceEEECce
Q 005896 624 SSLLELHIYGCPNLKKACKRDQGKEWPKIAHIPFVGIDRK 663 (671)
Q Consensus 624 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (671)
++|+.|+++++. ++.. ....++.+..+.+.++
T Consensus 526 ~~L~~L~Ls~N~-l~~~-------~~~~~~~L~~l~l~~N 557 (844)
T 3j0a_A 526 ANLEILDISRNQ-LLAP-------NPDVFVSLSVLDITHN 557 (844)
T ss_dssp SCCCEEEEEEEC-CCCC-------CSCCCSSCCEEEEEEE
T ss_pred ccccEEECCCCc-CCCC-------ChhHhCCcCEEEecCC
Confidence 999999999985 4322 1122345666666554
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=325.47 Aligned_cols=462 Identities=15% Similarity=0.118 Sum_probs=331.5
Q ss_pred cEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCccccc-chhhhccc
Q 005896 103 RTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL-PESKCKLL 180 (671)
Q Consensus 103 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~ 180 (671)
++|.+++ +.+ ..++..++ ++|++|++++|.+..++ ..|..+++|++|+|++|.++.+ |..|++++
T Consensus 3 ~~l~ls~---------n~l-~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSK---------NGL-IHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTT---------SCC-SSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred ceEecCC---------CCc-cccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc
Confidence 4666666 433 34554433 88999999999998776 5788999999999999999977 77899999
Q ss_pred cCcEEecCCCccccccchhhhccCcceEEeecCCcccc-ccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCc
Q 005896 181 NLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLK-EMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDE 259 (671)
Q Consensus 181 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~ 259 (671)
+|++|+|++| .+..+|.. .+++|++|++++|.+.+ .+|..++++++|++|++..+....
T Consensus 70 ~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----------------- 129 (520)
T 2z7x_B 70 ELEYLDLSHN-KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----------------- 129 (520)
T ss_dssp TCCEEECCSS-CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----------------
T ss_pred CCCEEecCCC-ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----------------
Confidence 9999999998 78888886 89999999999998544 467789999999999887654322
Q ss_pred cEEecccCCCChhhhhhhccCCCCCC--CceEEEEecC--CCCCCchhhHHHHhccCCCCC-CCcEEEEeccCCc-cCCC
Q 005896 260 LCIAGLENVNSPQNAREAALREKHNL--EALTLEWGSQ--SDSPRDAVLEEKVLDTLQPHE-RIKELAIKHYGGA-RFPP 333 (671)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~-~~p~ 333 (671)
..+..+++| +.|++++|.+ .+..+ ..+..+. ....+++.++... .++.
T Consensus 130 -----------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~---------~~l~~l~~~~l~l~l~~n~~~~~~~~ 183 (520)
T 2z7x_B 130 -----------------SSVLPIAHLNISKVLLVLGETYGEKEDP---------EGLQDFNTESLHIVFPTNKEFHFILD 183 (520)
T ss_dssp -----------------GGGGGGTTSCEEEEEEEECTTTTSSCCT---------TTTTTCCEEEEEEECCSSSCCCCCCC
T ss_pred -----------------hhccccccceeeEEEeeccccccccccc---------ccccccccceEEEEeccCcchhhhhh
Confidence 113344455 9999999877 22222 1222222 2223444444422 2333
Q ss_pred CCCCCCCCCccEEEEeCCC-------CCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCccc
Q 005896 334 WIGQHSFSEMKVLKLENCD-------NCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPE 406 (671)
Q Consensus 334 ~~~~~~l~~L~~L~l~~~~-------~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 406 (671)
.... .+++|+.|++++|. +.+.++.++.+++|+.|++++|............ ....++|+.|+++++..
T Consensus 184 ~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 184 VSVK-TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ---LVWHTTVWYFSISNVKL 259 (520)
T ss_dssp CCCT-TCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH---HHHTSSCSEEEEEEEEE
T ss_pred hhhh-cccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH---HhhhCcccEEEeecccc
Confidence 3322 58899999999886 4444557888899999999887543221111110 01146899999988753
Q ss_pred ccccccccCCCCccCCCCccceeeEecCCCCccCCCC-C---C---CCccEEEEeccCCcCccC-CCCCCcceEEeccCC
Q 005896 407 WQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPG-L---L---PSLETLVVRKCGKLVVPL-SSYPMLCRLEVDECK 478 (671)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-~---l---~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~~~ 478 (671)
...+...+... ....+++|+.++++++ .+ .+|. . + .+|+.|++++|......+ ..+++|++|++++|.
T Consensus 260 ~~~~p~~~~~~-~~~~l~~L~~l~l~~n-~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 260 QGQLDFRDFDY-SGTSLKALSIHQVVSD-VF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335 (520)
T ss_dssp ESCCCCCCCCC-CSCCCCEEEEEEEEEC-CC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred cCccccchhhc-ccccCceeEecccccc-ce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc
Confidence 32332222000 0011889999999984 55 4562 1 1 579999999998766554 679999999999998
Q ss_pred CcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccC---C-CCCCCCcceEEEccCcCcccccccccCCCCCcCeEE
Q 005896 479 ELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFP---E-EGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLW 554 (671)
Q Consensus 479 ~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~---~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 554 (671)
.. ..+|..+..+++|++|++++| .++.++ . ...+++|++|++++|...+.++...+..+++|++|+
T Consensus 336 l~---------~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 336 LT---------DTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CC---------TTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred cC---------hhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 43 347788899999999999999 455433 2 357799999999887766558877789999999999
Q ss_pred ecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCC--CCCCCccEEEEe
Q 005896 555 IAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEV--GLPSSLLELHIY 632 (671)
Q Consensus 555 l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~ 632 (671)
+++ |...+.++. ..+++|++|++++ ++++.+| ..+..+++|++|++++| .++.+|.. ..+++|+.|+++
T Consensus 406 Ls~-N~l~~~~~~-----~l~~~L~~L~Ls~-N~l~~ip-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 406 MSS-NILTDTIFR-----CLPPRIKVLDLHS-NKIKSIP-KQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCS-SCCCGGGGG-----SCCTTCCEEECCS-SCCCCCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CcC-CCCCcchhh-----hhcccCCEEECCC-Ccccccc-hhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECc
Confidence 999 544355554 3448999999999 6799999 66669999999999999 88899874 347899999999
Q ss_pred CChhhHHHHhhCCC-CCCCc
Q 005896 633 GCPNLKKACKRDQG-KEWPK 651 (671)
Q Consensus 633 ~c~~l~~~~~~~~~-~~~~~ 651 (671)
+|+ +.+.|...+. .+|.+
T Consensus 477 ~N~-~~c~c~~~~~~~~~~~ 495 (520)
T 2z7x_B 477 TNP-WDCSCPRIDYLSRWLN 495 (520)
T ss_dssp SSC-BCCCHHHHHHHHHHHH
T ss_pred CCC-CcccCCchHHHHHHHH
Confidence 997 7777776666 66743
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.2e-36 Score=325.12 Aligned_cols=457 Identities=16% Similarity=0.188 Sum_probs=341.4
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcc
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIP 152 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~ 152 (671)
.+..++++.+..+.+.. ..+..+.++++|++|.+.+ |.+ ..+++..|..+++|++|++++|.+..+|..
T Consensus 24 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~---------n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKS---------SRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp CCTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTT---------SCC-CEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCCCccEEECcCCccCc-cChhhhhcCCcccEEECCC---------CCc-CccChhhccccccCCEEECCCCccCccCHH
Confidence 45689999999987655 2346789999999999999 444 456677899999999999999999888754
Q ss_pred -cCCCCccceeecCCCcccc--cchhhhccccCcEEecCCCccccccc-hhhhccCcceEEeecCCccccccCccCCCCC
Q 005896 153 -FEDLRLLRFLNLADTDIRS--LPESKCKLLNLEILILRNCSRLIKLP-QEMRNLINLRHLDIRGAKLLKEMPFGMKELN 228 (671)
Q Consensus 153 -~~~l~~L~~L~L~~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~ 228 (671)
|+.+++|++|+|++|.++. +|..++++++|++|++++|..++.+| ..++++++|++|++++|.+.+..|..+++++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 8999999999999999995 47789999999999999995578887 4689999999999999997777888899999
Q ss_pred CCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHH
Q 005896 229 KLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKV 308 (671)
Q Consensus 229 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (671)
+|+.|++..+.....+. ..+..+++|+.|++++|.+.+.... .
T Consensus 173 ~L~~L~l~~n~~~~~~~-------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~------~ 215 (549)
T 2z81_A 173 DIHHLTLHLSESAFLLE-------------------------------IFADILSSVRYLELRDTNLARFQFS------P 215 (549)
T ss_dssp EEEEEEEECSBSTTHHH-------------------------------HHHHSTTTBSEEEEESCBCTTCCCC------C
T ss_pred cCceEecccCcccccch-------------------------------hhHhhcccccEEEccCCcccccccc------c
Confidence 99999876544321111 1134467888888888877442110 0
Q ss_pred hccCCCCCCCcEEEEeccCCc-----cCCCCCCCCCCCCccEEEEeCCCCCCC-------CCCCCCCCCccEEEEeCCCC
Q 005896 309 LDTLQPHERIKELAIKHYGGA-----RFPPWIGQHSFSEMKVLKLENCDNCAA-------LPSLGLMSSLKILAVKGLKK 376 (671)
Q Consensus 309 ~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~l~~~~~~~~-------~~~l~~l~~L~~L~L~~~~~ 376 (671)
......+++|+.|++.++... .++..+. .+++|+.+++++|.+.+. .+.+..+++|+.|.+.++..
T Consensus 216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR--YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG--GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC
T ss_pred cchhhhhhcccceeccccccchhHHHHHHHHhh--hhccccccccccccccccccccccchhhhhhhccccccccccccc
Confidence 111234567888888877532 1223333 467888888888875442 12356778888888888753
Q ss_pred ceeccccccCC-CccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCC------CCCCCcc
Q 005896 377 LKSIESEVYGE-GFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP------GLLPSLE 449 (671)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp------~~l~~L~ 449 (671)
..... +.+- .....+++|+.|+++++. +..+...+.+. +++|++|++++ +++++.+| ..+++|+
T Consensus 294 ~~~~~--~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~-----l~~L~~L~Ls~-N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 294 PQFYL--FYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQH-----LKSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp SCGGG--SCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHH-----CTTCCEEECCS-SCCCHHHHHHHTCTTSSTTCC
T ss_pred chhhh--cccchhhhhhcccceEEEeccCc-cccCCHHHHhc-----CccccEEEccC-CccccccccchhhhhccccCc
Confidence 22110 0000 001125678888888765 23332222111 78999999999 46765442 4678999
Q ss_pred EEEEeccCCcC-----ccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCCCCCCC
Q 005896 450 TLVVRKCGKLV-----VPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFPTN 524 (671)
Q Consensus 450 ~L~l~~~~~l~-----~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 524 (671)
.|++++|.... ..+..+++|++|++++|. ++.+|..+..+++|++|++++| .++.+|.. .+++
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~----------l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~-~~~~ 432 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT----------FHPMPDSCQWPEKMRFLNLSST-GIRVVKTC-IPQT 432 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC----------CCCCCSCCCCCTTCCEEECTTS-CCSCCCTT-SCTT
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCC----------CccCChhhcccccccEEECCCC-Ccccccch-hcCC
Confidence 99999987642 347789999999999997 5788988999999999999999 56666643 4579
Q ss_pred cceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccC
Q 005896 525 LTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQ 604 (671)
Q Consensus 525 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~ 604 (671)
|++|++++|+ ++.++ ..+++|++|++++ +.++.+|. . ..+++|++|++++ +.++.++...+..+++|+
T Consensus 433 L~~L~Ls~N~-l~~~~----~~l~~L~~L~Ls~--N~l~~ip~-~---~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 433 LEVLDVSNNN-LDSFS----LFLPRLQELYISR--NKLKTLPD-A---SLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp CSEEECCSSC-CSCCC----CCCTTCCEEECCS--SCCSSCCC-G---GGCTTCCEEECCS-SCCCCCCTTGGGGCTTCC
T ss_pred ceEEECCCCC-hhhhc----ccCChhcEEECCC--CccCcCCC-c---ccCccCCEEecCC-CccCCcCHHHHhcCcccC
Confidence 9999998875 44433 5799999999998 68889987 2 3589999999999 679988867799999999
Q ss_pred eEeecCCC
Q 005896 605 YLRIGNCP 612 (671)
Q Consensus 605 ~L~l~~c~ 612 (671)
+|++++|+
T Consensus 501 ~L~l~~N~ 508 (549)
T 2z81_A 501 KIWLHTNP 508 (549)
T ss_dssp EEECCSSC
T ss_pred EEEecCCC
Confidence 99999995
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-35 Score=330.88 Aligned_cols=359 Identities=15% Similarity=0.172 Sum_probs=173.8
Q ss_pred CccccCcccCCCCccceeecCCCcccc------------------cchhhh--ccccCcEEecCCCccccccchhhhccC
Q 005896 145 RIGELPIPFEDLRLLRFLNLADTDIRS------------------LPESKC--KLLNLEILILRNCSRLIKLPQEMRNLI 204 (671)
Q Consensus 145 ~l~~lp~~~~~l~~L~~L~L~~n~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~l~ 204 (671)
.+..+|..|+++++|++|+|++|.++. +|..++ ++++|++|+|++|...+.+|..+++++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 343356556666666666666666655 565555 666666666666644555665566666
Q ss_pred cceEEeecCCc-ccc-ccCccCCCCC-------CCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhh
Q 005896 205 NLRHLDIRGAK-LLK-EMPFGMKELN-------KLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAR 275 (671)
Q Consensus 205 ~L~~L~L~~~~-~~~-~~p~~l~~l~-------~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~ 275 (671)
+|++|++++|. +.+ .+|.++++++ +|+.|++..+.....+.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~------------------------------ 565 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA------------------------------ 565 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC------------------------------
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC------------------------------
Confidence 66666666665 343 4554443333 56665544433221110
Q ss_pred hhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCC-ccEEEEeCCCCC
Q 005896 276 EAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSE-MKVLKLENCDNC 354 (671)
Q Consensus 276 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~-L~~L~l~~~~~~ 354 (671)
...+.++++|+.|++++|.+. .+..+..+++|+.|++++|.+..+|.++. .+++ |+.|++++|.+.
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-----------~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~--~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-----------HLEAFGTNVKLTDLKLDYNQIEEIPEDFC--AFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-----------BCCCCCTTSEESEEECCSSCCSCCCTTSC--EECTTCCEEECCSSCCC
T ss_pred hhhhhcCCCCCEEECCCCCcc-----------cchhhcCCCcceEEECcCCccccchHHHh--hccccCCEEECcCCCCC
Confidence 002444455555555555552 11134455666666666666666676666 3666 777777777765
Q ss_pred CCCC-CCCCCC--CccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeE
Q 005896 355 AALP-SLGLMS--SLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSI 431 (671)
Q Consensus 355 ~~~~-~l~~l~--~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 431 (671)
.+| .++.++ +|+.|++++|.....++. +......-..++|+.|+++++... .+...+... +++|++|++
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~-----l~~L~~L~L 704 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFAT-----GSPISTIIL 704 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHT-----TCCCSEEEC
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCcccc-chhhhccccCCCcCEEEccCCcCC-ccCHHHHcc-----CCCCCEEEC
Confidence 344 454443 377777777754332221 100000000123333333332211 110000000 344444444
Q ss_pred ecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcccCC--CCCCCCeeEeec
Q 005896 432 AECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMH--KLNSLRDLGIQL 509 (671)
Q Consensus 432 ~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~--~l~~L~~L~l~~ 509 (671)
++ ++++ .+|..+... ....+.++++|+.|++++|. +..+|..+. .+++|+.|+|++
T Consensus 705 s~-N~L~-~ip~~~~~~----------~~~~l~nl~~L~~L~Ls~N~----------L~~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 705 SN-NLMT-SIPENSLKP----------KDGNYKNTYLLTTIDLRFNK----------LTSLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CS-CCCS-CCCTTSSSC----------TTSCCTTGGGCCEEECCSSC----------CCCCCGGGSTTTCTTCCEEECCS
T ss_pred CC-CcCC-ccChHHhcc----------ccccccccCCccEEECCCCC----------CccchHHhhhccCCCcCEEEeCC
Confidence 44 2333 333211000 00011223366666666665 445665554 666666666666
Q ss_pred CCCCcccCCC-CCCCCcceEEEccC------cCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEe
Q 005896 510 CPNLVSFPEE-GFPTNLTTLVIGNF------KLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLS 582 (671)
Q Consensus 510 ~~~l~~~~~~-~~~~~L~~L~l~~~------~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~ 582 (671)
| .++.+|.. ..+++|+.|++++| +..+.+|. .+.++++|+.|++++ +.++.+|. ...++|+.|+
T Consensus 763 N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~--N~L~~Ip~-----~l~~~L~~Ld 833 (876)
T 4ecn_A 763 N-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGS--NDIRKVDE-----KLTPQLYILD 833 (876)
T ss_dssp S-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCCEEECCS--SCCCBCCS-----CCCSSSCEEE
T ss_pred C-CCCccchhhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCCCCEEECCC--CCCCccCH-----hhcCCCCEEE
Confidence 6 33344432 34456666666542 22223332 355556666666655 33455555 2234555555
Q ss_pred ccC
Q 005896 583 FCG 585 (671)
Q Consensus 583 l~~ 585 (671)
|++
T Consensus 834 Ls~ 836 (876)
T 4ecn_A 834 IAD 836 (876)
T ss_dssp CCS
T ss_pred CCC
Confidence 555
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-35 Score=325.01 Aligned_cols=422 Identities=15% Similarity=0.146 Sum_probs=220.8
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccC-------------------------
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFE------------------------- 154 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~------------------------- 154 (671)
.+++.|.+.+ +...+.++ ..+..+++|++|+|++|.+..-+..++
T Consensus 81 ~~V~~L~L~~---------~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l 150 (636)
T 4eco_A 81 GRVTGLSLEG---------FGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150 (636)
T ss_dssp CCEEEEECTT---------SCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHT
T ss_pred CCEEEEEecC---------cccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhh
Confidence 5888888888 44545554 568889999999999886421111111
Q ss_pred ----------------------------CCCccceeecC--CCcccccchhhhccccCcEEecCCCccccc---------
Q 005896 155 ----------------------------DLRLLRFLNLA--DTDIRSLPESKCKLLNLEILILRNCSRLIK--------- 195 (671)
Q Consensus 155 ----------------------------~l~~L~~L~L~--~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~--------- 195 (671)
....++.+.+. +|.++.+|..++++++|++|+|++| .+..
T Consensus 151 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~ 229 (636)
T 4eco_A 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWEN 229 (636)
T ss_dssp CCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSC
T ss_pred ccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCC-ccccccccccccc
Confidence 11112222222 4566667777777777777777777 4554
Q ss_pred ---------cchhhh--ccCcceEEeecCCccccccCccCCCCCCCCccceeEec-CCcccccccCchhhHhcCCccEEe
Q 005896 196 ---------LPQEMR--NLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVG-KGECASGLEDLKSLNLLCDELCIA 263 (671)
Q Consensus 196 ---------lp~~i~--~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~~~~~~~~~l~~L~~L~~~l~~~ 263 (671)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++..+. ...
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~--------------------- 288 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG--------------------- 288 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH---------------------
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc---------------------
Confidence 777766 77777777777777667777777777777777654432 110
Q ss_pred cccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCC--CCCCCCCC
Q 005896 264 GLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPP--WIGQHSFS 341 (671)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~ 341 (671)
..++..++.+ ..+..+++|+.|+++++....+|. .+. .++
T Consensus 289 ---------~~lp~~~~~L---------------------------~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~ 330 (636)
T 4eco_A 289 ---------EQLKDDWQAL---------------------------ADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMK 330 (636)
T ss_dssp ---------HHHHHHHHHH---------------------------HHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCT
T ss_pred ---------ccchHHHHhh---------------------------hccccCCCCCEEECCCCcCCccCchhhhc--cCC
Confidence 0011111111 111222455555555555556666 555 477
Q ss_pred CccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCC-cceeeccCcccccccccccCCCCcc
Q 005896 342 EMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPS-LEILSFESLPEWQHWNTNIKGNEPV 420 (671)
Q Consensus 342 ~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~ 420 (671)
+|++|++++|.+.+.+|.++.+++|++|++++|.. ..++..+.. +++ |+.|+++++... .+...+..
T Consensus 331 ~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l-~~lp~~l~~------l~~~L~~L~Ls~N~l~-~lp~~~~~---- 398 (636)
T 4eco_A 331 KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI-TEIPANFCG------FTEQVENLSFAHNKLK-YIPNIFDA---- 398 (636)
T ss_dssp TCCEEECCSCCCEEECCCCEEEEEESEEECCSSEE-EECCTTSEE------ECTTCCEEECCSSCCS-SCCSCCCT----
T ss_pred CCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcc-ccccHhhhh------hcccCcEEEccCCcCc-ccchhhhh----
Confidence 77777777777765666677777777777777743 345444433 555 666666655422 22221111
Q ss_pred CCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcccC-CCC
Q 005896 421 EIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDM-HKL 499 (671)
Q Consensus 421 ~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~-~~l 499 (671)
..+++|++|++++ +.+++.+|..++.. ....-.+++|+.|++++|. +..+|..+ ..+
T Consensus 399 ~~l~~L~~L~Ls~-N~l~~~~p~~l~~~-----------~~~~~~~~~L~~L~Ls~N~----------l~~lp~~~~~~l 456 (636)
T 4eco_A 399 KSVSVMSAIDFSY-NEIGSVDGKNFDPL-----------DPTPFKGINVSSINLSNNQ----------ISKFPKELFSTG 456 (636)
T ss_dssp TCSSCEEEEECCS-SCTTTTTTCSSCTT-----------CSSCCCCCCEEEEECCSSC----------CCSCCTHHHHTT
T ss_pred cccCccCEEECcC-CcCCCcchhhhccc-----------ccccccCCCCCEEECcCCc----------cCcCCHHHHccC
Confidence 0045788888887 46665566443300 0000023344444444444 23344332 234
Q ss_pred CCCCeeEeecCCCCcccCCCCCC---------CCcceEEEccCcCccccccccc-CCCCCcCeEEecccCCCcccCCccc
Q 005896 500 NSLRDLGIQLCPNLVSFPEEGFP---------TNLTTLVIGNFKLYKTLVQWGL-HRLTSLKHLWIAVSDDEAECFPDEE 569 (671)
Q Consensus 500 ~~L~~L~l~~~~~l~~~~~~~~~---------~~L~~L~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~~c~~~~~i~~~~ 569 (671)
++|+.|++++| .++.+|...+. ++|+.|++++|+ ++.+|.... ..+++|+.|++++ +.+..+|. .
T Consensus 457 ~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~--N~l~~ip~-~ 531 (636)
T 4eco_A 457 SPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSY--NSFSKFPT-Q 531 (636)
T ss_dssp CCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCS--SCCSSCCC-G
T ss_pred CCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCC--CCCCCcCh-h
Confidence 55555555555 33344433111 145555554443 223433211 2555555555555 34444444 2
Q ss_pred ccccCCCCcCeEeccC------CCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCCCCCCccEEEEeCCh
Q 005896 570 IGMTLPTSLTHLSFCG------FQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLPSSLLELHIYGCP 635 (671)
Q Consensus 570 ~~~~~~~~L~~L~l~~------c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 635 (671)
+ ..+++|++|++++ +.....+| ..+..+++|++|++++| .++.+|.. +.++|+.|++++|+
T Consensus 532 ~--~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 532 P--LNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp G--GGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCT
T ss_pred h--hcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCC
Confidence 2 2345555555532 22223344 44555555555555555 34555543 33555555555553
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.5e-35 Score=323.79 Aligned_cols=515 Identities=17% Similarity=0.111 Sum_probs=292.5
Q ss_pred CccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccc-hhhhc
Q 005896 101 HLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLP-ESKCK 178 (671)
Q Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~~ 178 (671)
.++.|++++ |.+ ..+++..|.++++|++|+|++|.++.+| .+|.++++|++|+|++|+|+.+| ..|++
T Consensus 53 ~~~~LdLs~---------N~i-~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSF---------NPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTT---------SCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCCEEEeeC---------CCC-CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 455555555 332 3344455555555666666555555554 34555555666666655555554 33555
Q ss_pred cccCcEEecCCCccccccch-hhhccCcceEEeecCCcccc-ccCccCCCCCCCCccceeEecCCcccccccCchhhHhc
Q 005896 179 LLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDIRGAKLLK-EMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLL 256 (671)
Q Consensus 179 L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L 256 (671)
|++|++|+|++| .+..+|. .|+++++|++|++++|.+.. .+|..++.+++|++|++..+...... ...+..+..+
T Consensus 123 L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~l 199 (635)
T 4g8a_A 123 LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--CTDLRVLHQM 199 (635)
T ss_dssp CTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC--GGGGHHHHTC
T ss_pred CCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc--cccccchhhh
Confidence 555666666555 4544443 25555556666665555221 23444555555555555444433221 1222223222
Q ss_pred CCccEEec-----------------------ccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCC
Q 005896 257 CDELCIAG-----------------------LENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQ 313 (671)
Q Consensus 257 ~~~l~~~~-----------------------~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (671)
........ +.............+..+..++...+..+.......... .....+.
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~---~~~~~~~ 276 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK---FDKSALE 276 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC---CCTTTTG
T ss_pred hhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc---ccccccc
Confidence 11000000 000000111122223334444444443332211100000 0001111
Q ss_pred CCCCCcEEEEeccCCc----cCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCc
Q 005896 314 PHERIKELAIKHYGGA----RFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGF 389 (671)
Q Consensus 314 ~~~~L~~L~l~~~~~~----~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 389 (671)
....+....+...... ..+..+. .+.+++.+.+.++.... ++.+....+|+.|++.+|......
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--------- 344 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFN--CLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFP--------- 344 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTG--GGTTCSEEEEESCEEEE-CGGGGSCCCCSEEEEESCEESSCC---------
T ss_pred cccchhhhhhhhhhhcccccchhhhhh--hhccccccccccccccc-ccccccchhhhhhhcccccccCcC---------
Confidence 1223333333322211 1111222 35566666666665432 223444566777777766422111
Q ss_pred cCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCcc--CCC---CCCCCccEEEEeccCCc--Ccc
Q 005896 390 SMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSG--ELP---GLLPSLETLVVRKCGKL--VVP 462 (671)
Q Consensus 390 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~lp---~~l~~L~~L~l~~~~~l--~~~ 462 (671)
...++.|+.+.+..+...... +...+++|+.|++++ +.+.. ..+ ....+|+.+++..+... ...
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~~--------~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 415 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNAF--------SEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCBC--------CCCBCTTCCEEECCS-SCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred cccchhhhhcccccccCCCCc--------ccccccccccchhhc-cccccccccccchhhhhhhhhhhcccccccccccc
Confidence 112566677666654322111 111178888888887 44442 122 25677888888776543 445
Q ss_pred CCCCCCcceEEeccCCCcccccCCCCCccC-cccCCCCCCCCeeEeecCCCCcccCCC--CCCCCcceEEEccCcCcccc
Q 005896 463 LSSYPMLCRLEVDECKELVDICGCDKLEAL-PNDMHKLNSLRDLGIQLCPNLVSFPEE--GFPTNLTTLVIGNFKLYKTL 539 (671)
Q Consensus 463 ~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~ 539 (671)
+..+++|+.+++..+... ... +..+..+++++.+++++|. +..++.. ..+++|+.|++++|+....+
T Consensus 416 ~~~l~~L~~l~l~~~~~~---------~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~ 485 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLK---------QMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENF 485 (635)
T ss_dssp CTTCTTCCEEECTTSEEE---------STTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccccccccchhhhhcccc---------ccccccccccccccccccccccc-cccccccccccchhhhhhhhhhccccccc
Confidence 667888999998887743 122 2346789999999999994 4444333 56789999999999888877
Q ss_pred cccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCC
Q 005896 540 VQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPE 619 (671)
Q Consensus 540 ~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~ 619 (671)
.+..+..+++|++|++++ +.++.+++..+ ..+++|++|+|++ ++++.++...+..+++|++|++++| +++.++.
T Consensus 486 ~~~~~~~l~~L~~L~Ls~--N~L~~l~~~~f--~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 559 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQ--CQLEQLSPTAF--NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKK 559 (635)
T ss_dssp ECSCCTTCTTCCEEECTT--SCCCEECTTTT--TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCS
T ss_pred CchhhhhccccCEEECCC--CccCCcChHHH--cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCH
Confidence 777899999999999998 67877766355 5789999999999 7899998788999999999999999 7777766
Q ss_pred C---CCCCCccEEEEeCChhhHHHHhhCCCCCCCceeccceEEECceEecCCC
Q 005896 620 V---GLPSSLLELHIYGCPNLKKACKRDQGKEWPKIAHIPFVGIDRKFIYDPE 669 (671)
Q Consensus 620 ~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (671)
. .++++|+.|+++++| +.|.|...+..+|.+-.....+......|..|+
T Consensus 560 ~~l~~l~~~L~~L~L~~Np-~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~ 611 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQND-FACTCEHQSFLQWIKDQRQLLVEVERMECATPS 611 (635)
T ss_dssp SCTTCCCTTCCEEECTTCC-BCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSST
T ss_pred HHHHhhhCcCCEEEeeCCC-CcccCCcHHHHHHHHhCCCccCCCCCceeCCch
Confidence 3 335799999999998 999998888888865444333444444454444
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-35 Score=326.89 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=29.4
Q ss_pred CceeEEEeEeCCCCCccchhhhcccCCccEEecccc
Q 005896 75 ERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRL 110 (671)
Q Consensus 75 ~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 110 (671)
.+|+.+.+..+...+ ..++.+.++++|++|.++++
T Consensus 81 ~~V~~L~L~~~~l~g-~lp~~l~~L~~L~~L~Ls~N 115 (636)
T 4eco_A 81 GRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSH 115 (636)
T ss_dssp CCEEEEECTTSCCEE-EECGGGGGCTTCCEEESCCG
T ss_pred CCEEEEEecCcccCC-cCChHHhcCccceEEECcCC
Confidence 578899998887765 45688999999999999984
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-34 Score=315.09 Aligned_cols=462 Identities=16% Similarity=0.102 Sum_probs=293.6
Q ss_pred ccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCccccc-chh
Q 005896 98 EIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL-PES 175 (671)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~ 175 (671)
.+...+++.+.+ +.. ..+|...+ ++|++|++++|.+..+| ..|..+++|++|+|++|.++.+ |..
T Consensus 29 ~~~~~~~l~ls~---------~~L-~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 29 SNELESMVDYSN---------RNL-THVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp ----CCEEECTT---------SCC-CSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred ccCCCcEEEcCC---------CCC-ccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH
Confidence 455557777777 333 23444332 77888888888887776 5678888888888888888876 667
Q ss_pred hhccccCcEEecCCCccccccchhhhccCcceEEeecCCcccccc--CccCCCCCCCCccceeEecCCcccccccCchhh
Q 005896 176 KCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEM--PFGMKELNKLQTLSNFIVGKGECASGLEDLKSL 253 (671)
Q Consensus 176 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~--p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L 253 (671)
|+++++|++|+|++| .+..+|.. .+++|++|++++|. +..+ |..++++++|++|++..+.....
T Consensus 96 ~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---------- 161 (562)
T 3a79_B 96 FLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---------- 161 (562)
T ss_dssp TTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT----------
T ss_pred hCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC----------
Confidence 888888888888888 67778875 78888888888887 4443 45678888888887655432210
Q ss_pred HhcCCccEEecccCCCChhhhhhhccCCCC--CCCceEEEEecC--CCCCCchhhHHHHhccCCCCCCCcEEEEeccCCc
Q 005896 254 NLLCDELCIAGLENVNSPQNAREAALREKH--NLEALTLEWGSQ--SDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGA 329 (671)
Q Consensus 254 ~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 329 (671)
.+..++ +|+.|++++|.+ .+..+.. +..+.. ..+ .+++.++...
T Consensus 162 ------------------------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~------l~~l~~-~~l-~l~l~~n~~~ 209 (562)
T 3a79_B 162 ------------------------DLLPVAHLHLSCILLDLVSYHIKGGETES------LQIPNT-TVL-HLVFHPNSLF 209 (562)
T ss_dssp ------------------------TTGGGTTSCEEEEEEEESSCCCCSSSCCE------EEECCE-EEE-EEEECSSSCC
T ss_pred ------------------------chhhhhhceeeEEEeecccccccccCccc------ccccCc-ceE-EEEecCccch
Confidence 122223 347888887766 2222111 111100 011 2334444322
Q ss_pred c-CCCCCCCCCCCCccEEEEeCCCC-----CCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccC
Q 005896 330 R-FPPWIGQHSFSEMKVLKLENCDN-----CAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFES 403 (671)
Q Consensus 330 ~-~p~~~~~~~l~~L~~L~l~~~~~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 403 (671)
. ++..... .+++|+.|++++|.. .+.++.+..+++|+.|++.++............ ....++|++|++++
T Consensus 210 ~~~~~~~~~-~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~---~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 210 SVQVNMSVN-ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ---FFWPRPVEYLNIYN 285 (562)
T ss_dssp CCCCEEEES-SEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH---HHTTSSEEEEEEEE
T ss_pred hhhhhhccc-ccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH---hhhcccccEEEEec
Confidence 1 2222211 466777777776641 111223555667777777665322111000000 01134777777777
Q ss_pred cccccccccccCCCCccCCCCccceeeEecCCCCccCCCC-------CCCCccEEEEeccCCcCccC-CCCCCcceEEec
Q 005896 404 LPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPG-------LLPSLETLVVRKCGKLVVPL-SSYPMLCRLEVD 475 (671)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-------~l~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~ 475 (671)
+.....+...+... ....++.|+.+++.. +.+ .+|. .-.+|+.|++++|......+ ..+++|++|+++
T Consensus 286 n~l~~~ip~~~~~~-~~~~L~~L~~~~~~~-~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 286 LTITERIDREEFTY-SETALKSLMIEHVKN-QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361 (562)
T ss_dssp EEECSCCCCCCCCC-CSCSCCEEEEEEEEE-CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred cEeeccccchhhhc-ccccchheehhhccc-cee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECC
Confidence 65322221111000 000134444444444 222 3441 12569999999998765554 679999999999
Q ss_pred cCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCC----CCCCCCcceEEEccCcCcccccccccCCCCCcC
Q 005896 476 ECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPE----EGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLK 551 (671)
Q Consensus 476 ~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~ 551 (671)
+|... +.+|..+..+++|++|++++| .++.++. ...+++|++|++++|...+.++...+..+++|+
T Consensus 362 ~n~l~---------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 362 QNVFT---------DSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp SSCCC---------TTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCccc---------cchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 99843 346778899999999999999 6665542 356799999999888766558877789999999
Q ss_pred eEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCC--CCCCCccEE
Q 005896 552 HLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEV--GLPSSLLEL 629 (671)
Q Consensus 552 ~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L 629 (671)
+|++++ |...+.++. ..+++|++|++++ ++++.+| ..+..+++|++|++++| .++.+|.. ..+++|+.|
T Consensus 432 ~L~l~~-n~l~~~~~~-----~l~~~L~~L~L~~-N~l~~ip-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 432 VLNLSS-NMLTGSVFR-----CLPPKVKVLDLHN-NRIMSIP-KDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp EEECCS-SCCCGGGGS-----SCCTTCSEEECCS-SCCCCCC-TTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCE
T ss_pred EEECCC-CCCCcchhh-----hhcCcCCEEECCC-CcCcccC-hhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEE
Confidence 999999 443344444 2347999999999 6899999 56669999999999999 88899884 447899999
Q ss_pred EEeCChhhHHHHhhCCC
Q 005896 630 HIYGCPNLKKACKRDQG 646 (671)
Q Consensus 630 ~l~~c~~l~~~~~~~~~ 646 (671)
+++++| +.+.|...+.
T Consensus 503 ~l~~N~-~~c~c~~~~~ 518 (562)
T 3a79_B 503 WLHDNP-WDCTCPGIRY 518 (562)
T ss_dssp ECCSCC-BCCCHHHHHH
T ss_pred EecCCC-cCCCcchHHH
Confidence 999987 6666655444
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.2e-34 Score=319.94 Aligned_cols=358 Identities=14% Similarity=0.149 Sum_probs=188.1
Q ss_pred cccccchhhhccCcceEEeecCCcccc-----------------ccCccCC--CCCCCCccceeEecCCcccccccCchh
Q 005896 192 RLIKLPQEMRNLINLRHLDIRGAKLLK-----------------EMPFGMK--ELNKLQTLSNFIVGKGECASGLEDLKS 252 (671)
Q Consensus 192 ~l~~lp~~i~~l~~L~~L~L~~~~~~~-----------------~~p~~l~--~l~~L~~L~~~~~~~~~~~~~~~~l~~ 252 (671)
.+..+|..++++++|++|+|++|.+.+ .+|..++ ++++|+.|++..+....
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~---------- 505 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT---------- 505 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----------
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----------
Confidence 444467667777777777777776444 2666666 77777777655443211
Q ss_pred hHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEec-CCC-CCCchhhHHHHhc-cCCCCCCCcEEEEeccCCc
Q 005896 253 LNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGS-QSD-SPRDAVLEEKVLD-TLQPHERIKELAIKHYGGA 329 (671)
Q Consensus 253 L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~ 329 (671)
.++..+.++++|+.|++++|. +.+ ..+.. ...+. .+..+++|+.|++++|.+.
T Consensus 506 ---------------------~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~---i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 506 ---------------------QLPDFLYDLPELQSLNIACNRGISAAQLKAD---WTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp ---------------------SCCGGGGGCSSCCEEECTTCTTSCHHHHHHH---HHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ---------------------cChHHHhCCCCCCEEECcCCCCcccccchHH---HHhhhhcccccCCccEEEeeCCcCC
Confidence 112335556666777776665 422 11111 11111 4445567788888887777
Q ss_pred cCCC--CCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCC-cceeeccCccc
Q 005896 330 RFPP--WIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPS-LEILSFESLPE 406 (671)
Q Consensus 330 ~~p~--~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~ 406 (671)
.+|. .+. .+++|+.|++++|.+. .+|.++.+++|+.|++++|... .++..+.. +++ |+.|+++++..
T Consensus 562 ~ip~~~~l~--~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~------l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 EFPASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCA------FTDQVEGLGFSHNKL 631 (876)
T ss_dssp BCCCHHHHT--TCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCE------ECTTCCEEECCSSCC
T ss_pred ccCChhhhh--cCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhh------ccccCCEEECcCCCC
Confidence 7777 666 4788888888888876 6667788888888888887644 55544433 555 66666666542
Q ss_pred ccccccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCC--CCCCcceEEeccCCCccccc
Q 005896 407 WQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLS--SYPMLCRLEVDECKELVDIC 484 (671)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~~~~~i~ 484 (671)
..+...+... ..++|+.|++++ +.+.+.+|. ++ ..+. .+++|+.|++++|.
T Consensus 632 -~~lp~~~~~~----~~~~L~~L~Ls~-N~l~g~ip~-l~--------------~~l~~~~~~~L~~L~Ls~N~------ 684 (876)
T 4ecn_A 632 -KYIPNIFNAK----SVYVMGSVDFSY-NKIGSEGRN-IS--------------CSMDDYKGINASTVTLSYNE------ 684 (876)
T ss_dssp -CSCCSCCCTT----CSSCEEEEECCS-SCTTTTSSS-CS--------------SCTTTCCCCCEEEEECCSSC------
T ss_pred -CcCchhhhcc----ccCCCCEEECcC-CcCCCcccc-ch--------------hhhccccCCCcCEEEccCCc------
Confidence 2222211110 034477777777 456544331 10 0000 12344455554444
Q ss_pred CCCCCccCcccC-CCCCCCCeeEeecCCCCcccCCCCCC---------CCcceEEEccCcCcccccccccC--CCCCcCe
Q 005896 485 GCDKLEALPNDM-HKLNSLRDLGIQLCPNLVSFPEEGFP---------TNLTTLVIGNFKLYKTLVQWGLH--RLTSLKH 552 (671)
Q Consensus 485 ~~~~l~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~---------~~L~~L~l~~~~~l~~~~~~~~~--~l~~L~~ 552 (671)
+..+|..+ ..+++|+.|++++| .++.+|...+. ++|+.|++++|+ ++.+|.. +. .+++|+.
T Consensus 685 ----L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~-l~~~~l~~L~~ 757 (876)
T 4ecn_A 685 ----IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDD-FRATTLPYLSN 757 (876)
T ss_dssp ----CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGG-GSTTTCTTCCE
T ss_pred ----CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHH-hhhccCCCcCE
Confidence 33444433 24455555555555 33344433111 145555554442 2334332 22 5555555
Q ss_pred EEecccCCCcccCCcccccccCCCCcCeEeccC------CCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCCCCCCc
Q 005896 553 LWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCG------FQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLPSSL 626 (671)
Q Consensus 553 L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~------c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L 626 (671)
|++++ +.+..+|. .+ ..+++|+.|++++ |.-...+| ..+..+++|++|++++| .++.+|.. +.++|
T Consensus 758 L~Ls~--N~L~~lp~-~l--~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L 829 (876)
T 4ecn_A 758 MDVSY--NCFSSFPT-QP--LNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSN-DIRKVDEK-LTPQL 829 (876)
T ss_dssp EECCS--SCCSSCCC-GG--GGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSS-CCCBCCSC-CCSSS
T ss_pred EEeCC--CCCCccch-hh--hcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCC-CCCccCHh-hcCCC
Confidence 55554 34444444 22 2445555555544 22223334 45555555666666555 34555543 33555
Q ss_pred cEEEEeCCh
Q 005896 627 LELHIYGCP 635 (671)
Q Consensus 627 ~~L~l~~c~ 635 (671)
+.|++++|+
T Consensus 830 ~~LdLs~N~ 838 (876)
T 4ecn_A 830 YILDIADNP 838 (876)
T ss_dssp CEEECCSCT
T ss_pred CEEECCCCC
Confidence 556665554
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-34 Score=310.96 Aligned_cols=465 Identities=18% Similarity=0.140 Sum_probs=296.3
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCc-
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPI- 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~- 151 (671)
....++.+.+..+.+.. ..+..|.++++|++|.+.+ |.+ ..+++..|.++++|++|++++|.+..+|.
T Consensus 50 ~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~---------n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 118 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG---------NPI-QSLALGAFSGLSSLQKLVAVETNLASLENF 118 (570)
T ss_dssp TCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTT---------CCC-CEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred CCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcC---------CcC-CccCHhhhcCccccccccccccccccCCCc
Confidence 34678999998886654 3346788999999999999 443 45667789999999999999999998875
Q ss_pred ccCCCCccceeecCCCcccc--cchhhhccccCcEEecCCCcccccc-chhhhccCcc----eEEeecCCccccccCccC
Q 005896 152 PFEDLRLLRFLNLADTDIRS--LPESKCKLLNLEILILRNCSRLIKL-PQEMRNLINL----RHLDIRGAKLLKEMPFGM 224 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L----~~L~L~~~~~~~~~p~~l 224 (671)
.++.+++|++|++++|.++. +|..++++++|++|++++| .+..+ |..++.+++| +.|++++|. +..++.+.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~ 196 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA 196 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTT
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCC-ceecCHHH
Confidence 68999999999999999985 6999999999999999999 66655 5568888888 899999999 55555553
Q ss_pred CCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhh
Q 005896 225 KELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVL 304 (671)
Q Consensus 225 ~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (671)
....+|+.|++..+..... ..+..+..+..++.+.+..............
T Consensus 197 ~~~~~L~~L~l~~n~~~~~------------------------------~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 197 FKEIRLHKLTLRNNFDSLN------------------------------VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp TTTCEEEEEEEESCCSCTT------------------------------HHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred hccCcceeEeccccccccc------------------------------chhhhhcCccccceeeeccccccCchhhhhc
Confidence 3444788887655421110 0011122222333222222211100000000
Q ss_pred HHHHhccCCCCCCCcEEEEeccC--CccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccc
Q 005896 305 EEKVLDTLQPHERIKELAIKHYG--GARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIES 382 (671)
Q Consensus 305 ~~~~~~~l~~~~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 382 (671)
....+..+.. ..++.+.+.++. ...+|.++. .+++|++|++++|.+.+..+.+..+ +|++|++++|... .++.
T Consensus 247 ~~~~~~~l~~-l~l~~l~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~ 321 (570)
T 2z63_A 247 DKSALEGLCN-LTIEEFRLAYLDYYLDDIIDLFN--CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT 321 (570)
T ss_dssp CTTTTGGGGG-SEEEEEEEEETTEEESCSTTTTG--GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB
T ss_pred chhhhccccc-cchhhhhhhcchhhhhhchhhhc--CcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc
Confidence 0000111110 013333333331 112233333 3555555665555544322244444 5566666555432 2221
Q ss_pred cccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCC--C---CCCCCccEEEEeccC
Q 005896 383 EVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGEL--P---GLLPSLETLVVRKCG 457 (671)
Q Consensus 383 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~l--p---~~l~~L~~L~l~~~~ 457 (671)
..+++|+.|++.++........ ..+++|++|++++ +.+++.. | ..+++|+.|++++|.
T Consensus 322 --------~~l~~L~~L~l~~n~~~~~~~~--------~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 384 (570)
T 2z63_A 322 --------LKLKSLKRLTFTSNKGGNAFSE--------VDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNG 384 (570)
T ss_dssp --------CBCSSCCEEEEESCBSCCBCCC--------CBCTTCCEEECCS-SCCBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred --------ccccccCEEeCcCCcccccccc--------ccCCCCCEEeCcC-CccCccccccccccccCccCEEECCCCc
Confidence 1155556665555442221111 1166777777766 3454221 2 256677777777765
Q ss_pred Cc--CccCCCCCCcceEEeccCCCcccccCCCCCccC-c-ccCCCCCCCCeeEeecCCCCcccCCC-CCCCCcceEEEcc
Q 005896 458 KL--VVPLSSYPMLCRLEVDECKELVDICGCDKLEAL-P-NDMHKLNSLRDLGIQLCPNLVSFPEE-GFPTNLTTLVIGN 532 (671)
Q Consensus 458 ~l--~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l-~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~ 532 (671)
.. ...+..+++|+.|++++|.. ..+ | ..+..+++|++|++++|......|.. ..+++|++|++++
T Consensus 385 l~~~~~~~~~l~~L~~L~l~~n~l----------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 454 (570)
T 2z63_A 385 VITMSSNFLGLEQLEHLDFQHSNL----------KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454 (570)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEE----------ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred cccccccccccCCCCEEEccCCcc----------ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcC
Confidence 32 22366788899999988873 333 2 35688999999999999544444433 4578999999988
Q ss_pred CcCcc-cccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCC
Q 005896 533 FKLYK-TLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNC 611 (671)
Q Consensus 533 ~~~l~-~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 611 (671)
|.... .+| ..+..+++|+.|++++ +.+..++...+ ..+++|++|++++ +.++.++...+..+++|++|++++|
T Consensus 455 n~l~~~~~p-~~~~~l~~L~~L~l~~--n~l~~~~~~~~--~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 455 NSFQENFLP-DIFTELRNLTFLDLSQ--CQLEQLSPTAF--NSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CEEGGGEEC-SCCTTCTTCCEEECTT--SCCCEECTTTT--TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCccccch-hhhhcccCCCEEECCC--CccccCChhhh--hcccCCCEEeCCC-CcCCCCCHHHhhcccCCcEEEecCC
Confidence 87653 344 4689999999999998 56666643244 5689999999999 5788888677899999999999999
Q ss_pred CCCCcCC
Q 005896 612 PNLTSFP 618 (671)
Q Consensus 612 ~~l~~~~ 618 (671)
+.-...|
T Consensus 529 ~~~~~~~ 535 (570)
T 2z63_A 529 PWDCSCP 535 (570)
T ss_dssp CBCCCTT
T ss_pred cccCCCc
Confidence 6444433
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=309.01 Aligned_cols=453 Identities=15% Similarity=0.140 Sum_probs=291.5
Q ss_pred eEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-CcccCCC
Q 005896 78 RHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PIPFEDL 156 (671)
Q Consensus 78 ~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l 156 (671)
+.+.+..+.+..+ +..+. ++|+.|.+++ |.+ ..+++..|..+++|++|+|++|.+..+ |..|+.+
T Consensus 3 ~~l~ls~n~l~~i--p~~~~--~~L~~L~Ls~---------n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 68 (520)
T 2z7x_B 3 FLVDRSKNGLIHV--PKDLS--QKTTILNISQ---------NYI-SELWTSDILSLSKLRILIISHNRIQYLDISVFKFN 68 (520)
T ss_dssp CEEECTTSCCSSC--CCSCC--TTCSEEECCS---------SCC-CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC
T ss_pred ceEecCCCCcccc--ccccc--ccccEEECCC---------Ccc-cccChhhccccccccEEecCCCccCCcChHHhhcc
Confidence 4455555555432 23232 7888888888 433 345566788888888888888888766 5678888
Q ss_pred CccceeecCCCcccccchhhhccccCcEEecCCCccccc--cchhhhccCcceEEeecCCccccccCccCCCCCCC--Cc
Q 005896 157 RLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIK--LPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKL--QT 232 (671)
Q Consensus 157 ~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L--~~ 232 (671)
++|++|+|++|.++.+|.. .+++|++|++++| .+.. +|..++++++|++|++++|.+.+ ..+..+++| +.
T Consensus 69 ~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 69 QELEYLDLSHNKLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISK 142 (520)
T ss_dssp TTCCEEECCSSCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred cCCCEEecCCCceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccch---hhccccccceeeE
Confidence 8888888888888888766 7888888888888 5553 56778888888888888887433 346666666 88
Q ss_pred cceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccC
Q 005896 233 LSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTL 312 (671)
Q Consensus 233 L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 312 (671)
|++..+...........+..++. + .+.+ .+.............+..+++|+.|++++|....... .....+..+
T Consensus 143 L~l~~n~l~~~~~~~~~l~~l~~-~-~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~l 216 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQDFNT-E-SLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS---YFLSILAKL 216 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTTCCE-E-EEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH---HHHHHHHGG
T ss_pred EEeeccccccccccccccccccc-c-eEEE-EeccCcchhhhhhhhhhcccceeeccccccccccccc---eeecchhhh
Confidence 88777655110000122222221 0 1111 1111111112223456778889999998886311111 112233466
Q ss_pred CCCCCCcEEEEeccCCcc-----CCCCCCCCCCCCccEEEEeCCCCCCCCC-CC-----CCCCCccEEEEeCCCCceecc
Q 005896 313 QPHERIKELAIKHYGGAR-----FPPWIGQHSFSEMKVLKLENCDNCAALP-SL-----GLMSSLKILAVKGLKKLKSIE 381 (671)
Q Consensus 313 ~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l-----~~l~~L~~L~L~~~~~~~~~~ 381 (671)
..+++|+.|++.++.... ++.+. ..++|++|++++|.+.+.+| .+ +.+++|+.+++++|.. .+|
T Consensus 217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p 291 (520)
T 2z7x_B 217 QTNPKLSNLTLNNIETTWNSFIRILQLV---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFP 291 (520)
T ss_dssp GGCTTCCEEEEEEEEEEHHHHHHHHHHH---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSC
T ss_pred ccccchhhccccccccCHHHHHHHHHHh---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecc
Confidence 677888888888765321 12222 14588889998888776666 55 7888888888887754 332
Q ss_pred c-cccCCCccCCC-CCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCcc-CCCCCCCCccEEEEeccCC
Q 005896 382 S-EVYGEGFSMPF-PSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSG-ELPGLLPSLETLVVRKCGK 458 (671)
Q Consensus 382 ~-~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~lp~~l~~L~~L~l~~~~~ 458 (671)
. .+.. + + -++|+.|++++| .+.. .++..+++|++|++++|..
T Consensus 292 ~~~~~~------~~~----------------------------~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 292 QSYIYE------IFS----------------------------NMNIKNFTVSGT-RMVHMLCPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp THHHHH------HHH----------------------------TCCCSEEEEESS-CCCCCCCCSSCCCCCEEECCSSCC
T ss_pred hhhhhc------ccc----------------------------cCceeEEEcCCC-ccccccchhhCCcccEEEeECCcc
Confidence 1 1110 0 0 123555555553 2321 1124455555555555543
Q ss_pred c---CccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCC--CCCCCcceEEEccC
Q 005896 459 L---VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEE--GFPTNLTTLVIGNF 533 (671)
Q Consensus 459 l---~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~ 533 (671)
. ...+..+++|++|++++|... .+..+|..+..+++|++|++++|.....+|.. ..+++|++|++++|
T Consensus 337 ~~~~~~~~~~l~~L~~L~L~~N~l~-------~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 337 TDTVFENCGHLTELETLILQMNQLK-------ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp CTTTTTTCCCCSSCCEEECCSSCCC-------BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred ChhhhhhhccCCCCCEEEccCCccC-------ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 2 244566788888888888732 12245667788999999999999544337654 56789999999888
Q ss_pred cCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCC
Q 005896 534 KLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCP 612 (671)
Q Consensus 534 ~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 612 (671)
...+..+.. +. ++|+.|++++ +.++.+|. .. ..+++|++|++++ +.++.+|...+..+++|++|++++|+
T Consensus 410 ~l~~~~~~~-l~--~~L~~L~Ls~--N~l~~ip~-~~--~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 410 ILTDTIFRC-LP--PRIKVLDLHS--NKIKSIPK-QV--VKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCGGGGGS-CC--TTCCEEECCS--SCCCCCCG-GG--GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcchhhh-hc--ccCCEEECCC--Ccccccch-hh--hcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 765555432 22 7999999998 67888887 44 3789999999999 67999995558899999999999994
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-32 Score=288.33 Aligned_cols=388 Identities=21% Similarity=0.202 Sum_probs=190.1
Q ss_pred CCceeEEEecCCCccccCcccCCCCccceeecCCCccc-ccchhhhccccC-------------cEEecCCCccccccch
Q 005896 133 FKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIR-SLPESKCKLLNL-------------EILILRNCSRLIKLPQ 198 (671)
Q Consensus 133 l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~lp~ 198 (671)
.+.|++|++++|.++.+|.+|+++++|++|++++|.++ .+|.+++.+++| ++|++++| .+..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC
Confidence 46777777777777777777777777777777777776 667777776654 77777777 6666665
Q ss_pred hhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhc
Q 005896 199 EMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAA 278 (671)
Q Consensus 199 ~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~ 278 (671)
+ .++|++|++++|. +..+|..+ ++|+.|++..+.....+.
T Consensus 89 -~--~~~L~~L~l~~n~-l~~lp~~~---~~L~~L~l~~n~l~~l~~--------------------------------- 128 (454)
T 1jl5_A 89 -L--PPHLESLVASCNS-LTELPELP---QSLKSLLVDNNNLKALSD--------------------------------- 128 (454)
T ss_dssp -C--CTTCSEEECCSSC-CSSCCCCC---TTCCEEECCSSCCSCCCS---------------------------------
T ss_pred -C--cCCCCEEEccCCc-CCcccccc---CCCcEEECCCCccCcccC---------------------------------
Confidence 2 3677777777777 44466433 566666654433221110
Q ss_pred cCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC
Q 005896 279 LREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP 358 (671)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~ 358 (671)
+ .++|+.|++++|.+.+ +..+..+++|++|+++++....+|.. .++|++|++++|.+.+ +|
T Consensus 129 ~--~~~L~~L~L~~n~l~~-----------lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~-l~ 189 (454)
T 1jl5_A 129 L--PPLLEYLGVSNNQLEK-----------LPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE-LP 189 (454)
T ss_dssp C--CTTCCEEECCSSCCSS-----------CCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS-CC
T ss_pred C--CCCCCEEECcCCCCCC-----------CcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc-Cc
Confidence 0 0356666666665522 11245556666666666666555543 3466777777766554 45
Q ss_pred CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCc
Q 005896 359 SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLS 438 (671)
Q Consensus 359 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 438 (671)
.++.+++|++|++++|...+ ++. ..++|+.|+++++.. ..+. .+.. +++|++|++++ ++++
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~-l~~---------~~~~L~~L~l~~n~l-~~lp-~~~~------l~~L~~L~l~~-N~l~ 250 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKK-LPD---------LPLSLESIVAGNNIL-EELP-ELQN------LPFLTTIYADN-NLLK 250 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCC---------CCTTCCEEECCSSCC-SSCC-CCTT------CTTCCEEECCS-SCCS
T ss_pred cccCCCCCCEEECCCCcCCc-CCC---------CcCcccEEECcCCcC-Cccc-ccCC------CCCCCEEECCC-CcCC
Confidence 66667777777776664322 221 134666666666532 2222 1222 66777777776 4666
Q ss_pred cCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCC
Q 005896 439 GELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPE 518 (671)
Q Consensus 439 ~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~ 518 (671)
.+|..+++|+.|++++|.... .-..+++|+.|++++|. +..+|.. .++|+.|++++| .++.++.
T Consensus 251 -~l~~~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~----------l~~l~~~---~~~L~~L~l~~N-~l~~i~~ 314 (454)
T 1jl5_A 251 -TLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENI----------FSGLSEL---PPNLYYLNASSN-EIRSLCD 314 (454)
T ss_dssp -SCCSCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC----------CSEESCC---CTTCCEEECCSS-CCSEECC
T ss_pred -cccccccccCEEECCCCcccc-cCcccCcCCEEECcCCc----------cCcccCc---CCcCCEEECcCC-cCCcccC
Confidence 466666677777777665321 11224667777777766 2333321 256777777777 4444432
Q ss_pred CCCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCcc---CCcc
Q 005896 519 EGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIF---LSSM 595 (671)
Q Consensus 519 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~---l~~~ 595 (671)
.+++|++|++++|+ ++.++.. +++|+.|++++ +.++.+|. .+++|++|++++ +.++. +| .
T Consensus 315 --~~~~L~~L~Ls~N~-l~~lp~~----~~~L~~L~L~~--N~l~~lp~------~l~~L~~L~L~~-N~l~~l~~ip-~ 377 (454)
T 1jl5_A 315 --LPPSLEELNVSNNK-LIELPAL----PPRLERLIASF--NHLAEVPE------LPQNLKQLHVEY-NPLREFPDIP-E 377 (454)
T ss_dssp --CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCS--SCCSCCCC------CCTTCCEEECCS-SCCSSCCCCC-T
T ss_pred --CcCcCCEEECCCCc-ccccccc----CCcCCEEECCC--Cccccccc------hhhhccEEECCC-CCCCcCCCCh-H
Confidence 34567777776544 3344432 56777777776 45666655 356777777776 44544 33 4
Q ss_pred CCCCC-------------CccCeEeecCCCCCCcCCCCCCCCCccEEEEeCCh
Q 005896 596 GFQNL-------------TSLQYLRIGNCPNLTSFPEVGLPSSLLELHIYGCP 635 (671)
Q Consensus 596 ~l~~l-------------~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 635 (671)
++..+ ++|++|++++| .++.+|. .|++++.|.+.+|.
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp TCCEEECCC--------------------------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCC-cCCcccc--chhhHhheeCcCcc
Confidence 45444 88999999999 6666654 57788999988875
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-31 Score=293.20 Aligned_cols=451 Identities=16% Similarity=0.127 Sum_probs=296.8
Q ss_pred eeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-CcccCC
Q 005896 77 VRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PIPFED 155 (671)
Q Consensus 77 ~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~ 155 (671)
.+.+.+..+.+..+ +..+. ++|+.|.+++ |.+ ..+++..|..+++|++|+|++|.++.+ |..|..
T Consensus 33 ~~~l~ls~~~L~~i--p~~~~--~~L~~L~Ls~---------N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 33 ESMVDYSNRNLTHV--PKDLP--PRTKALSLSQ---------NSI-SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98 (562)
T ss_dssp CCEEECTTSCCCSC--CTTSC--TTCCEEECCS---------SCC-CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT
T ss_pred CcEEEcCCCCCccC--CCCCC--CCcCEEECCC---------CCc-cccChhhhccCCCccEEECCCCCCCcCCHHHhCC
Confidence 37788877766542 33332 8999999999 444 456677899999999999999999877 577999
Q ss_pred CCccceeecCCCcccccchhhhccccCcEEecCCCcccccc--chhhhccCcceEEeecCCccccccCccCCCCCCC--C
Q 005896 156 LRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKL--PQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKL--Q 231 (671)
Q Consensus 156 l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L--~ 231 (671)
+++|++|+|++|.++.+|.. .+++|++|++++| .+..+ |..++++++|++|++++|.+.. ..+..+++| +
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLS 172 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEE
T ss_pred CCCCCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhceee
Confidence 99999999999999999877 8999999999999 67765 4789999999999999998433 245555666 8
Q ss_pred ccceeEecC--CcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHh
Q 005896 232 TLSNFIVGK--GECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVL 309 (671)
Q Consensus 232 ~L~~~~~~~--~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 309 (671)
.|++..+.. .... ...+..+.. + .+.+ .+.............+..+++|+.+++++|... ...-...+
T Consensus 173 ~L~L~~n~l~~~~~~--~~~l~~l~~-~-~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~l~~~~ 242 (562)
T 3a79_B 173 CILLDLVSYHIKGGE--TESLQIPNT-T-VLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN-----CQRLMTFL 242 (562)
T ss_dssp EEEEEESSCCCCSSS--CCEEEECCE-E-EEEE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTT-----HHHHHHHH
T ss_pred EEEeecccccccccC--cccccccCc-c-eEEE-EecCccchhhhhhhcccccceEEEecccccccc-----cchHHHHH
Confidence 888877765 2111 122222210 0 1111 111111111122234567788888888887520 11112233
Q ss_pred ccCCCCCCCcEEEEeccCCc-----cCCCCCCCCCCCCccEEEEeCCCCCCCCC-CC-----CCCCCccEEEEeCCCCce
Q 005896 310 DTLQPHERIKELAIKHYGGA-----RFPPWIGQHSFSEMKVLKLENCDNCAALP-SL-----GLMSSLKILAVKGLKKLK 378 (671)
Q Consensus 310 ~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l-----~~l~~L~~L~L~~~~~~~ 378 (671)
..+...++|+.+++.++... .++.+.. .++|++|++++|.+.+.+| .+ +.++.|+.+++..+..
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-- 317 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-- 317 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--
Confidence 34555567777777665422 2233332 3478888888888776555 33 4455555555544432
Q ss_pred eccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCcc-CCCCCCCCccEEEEeccC
Q 005896 379 SIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSG-ELPGLLPSLETLVVRKCG 457 (671)
Q Consensus 379 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~lp~~l~~L~~L~l~~~~ 457 (671)
.++...... + .. .++|++|++++| .+.. .++..+++|++|++++|.
T Consensus 318 ~~p~~~~~~-----~---------------------~~------~~~L~~L~l~~n-~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 318 LFSKEALYS-----V---------------------FA------EMNIKMLSISDT-PFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp SSCHHHHHH-----H---------------------HH------TCCCSEEEEESS-CCCCCCCCSSCCCCCEEECCSSC
T ss_pred ecChhhhhh-----h---------------------hc------cCcceEEEccCC-CcccccCccCCCCceEEECCCCc
Confidence 111100000 0 00 134666666663 3331 112456666666666664
Q ss_pred Cc---CccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCC--CCCCCcceEEEcc
Q 005896 458 KL---VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEE--GFPTNLTTLVIGN 532 (671)
Q Consensus 458 ~l---~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~ 532 (671)
.. ...+..+++|++|++++|... .+..+|..+..+++|++|++++|.....+|.. ..+++|++|++++
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLK-------NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCC-------BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred cccchhhhhcccCCCCEEECCCCCcC-------CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 33 244566888889999888722 12244566889999999999999544337654 4578999999988
Q ss_pred CcCcccccccccCCC-CCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCC
Q 005896 533 FKLYKTLVQWGLHRL-TSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNC 611 (671)
Q Consensus 533 ~~~l~~~~~~~~~~l-~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 611 (671)
|...+.++. .+ ++|+.|++++ +.++.+|. .. ..+++|++|++++ ++++.+|...+..+++|++|++++|
T Consensus 438 n~l~~~~~~----~l~~~L~~L~L~~--N~l~~ip~-~~--~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 438 NMLTGSVFR----CLPPKVKVLDLHN--NRIMSIPK-DV--THLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp SCCCGGGGS----SCCTTCSEEECCS--SCCCCCCT-TT--TSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCCCcchhh----hhcCcCCEEECCC--CcCcccCh-hh--cCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCC
Confidence 875554443 34 6999999998 68889987 34 3788999999999 7799999555899999999999999
Q ss_pred C
Q 005896 612 P 612 (671)
Q Consensus 612 ~ 612 (671)
+
T Consensus 508 ~ 508 (562)
T 3a79_B 508 P 508 (562)
T ss_dssp C
T ss_pred C
Confidence 5
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.2e-29 Score=282.16 Aligned_cols=487 Identities=18% Similarity=0.133 Sum_probs=331.4
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-c
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-I 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~ 151 (671)
.|..++++.+..+.+..+ ...+|.++++|++|.+++ |.+ ..+++++|.++++|++|+|++|+++.+| .
T Consensus 50 lp~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~---------N~i-~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSR---------CEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp SCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTT---------CCC-CEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCC---------CcC-CCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 567899999999877653 346799999999999999 544 5677889999999999999999999998 4
Q ss_pred ccCCCCccceeecCCCcccccch-hhhccccCcEEecCCCcccc--ccchhhhccCcceEEeecCCccccccCccCCCCC
Q 005896 152 PFEDLRLLRFLNLADTDIRSLPE-SKCKLLNLEILILRNCSRLI--KLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELN 228 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~ 228 (671)
.|.++++|++|+|++|.++.+|. .|+++++|++|++++| .+. .+|..++.+++|++|++++|.+.+..|..+..+.
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 68999999999999999999964 6999999999999999 665 4678889999999999999995444445566555
Q ss_pred CCCccce----eEecCCcccccc-c--------------C-------chhhHhcCC-ccEEecccCCCChhhhhhhccCC
Q 005896 229 KLQTLSN----FIVGKGECASGL-E--------------D-------LKSLNLLCD-ELCIAGLENVNSPQNAREAALRE 281 (671)
Q Consensus 229 ~L~~L~~----~~~~~~~~~~~~-~--------------~-------l~~L~~L~~-~l~~~~~~~~~~~~~~~~~~l~~ 281 (671)
+++.+.. ..+.......+. . . +..+..+.. .+..................+..
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 5544321 111111100000 0 0 011111110 11111222222222233344555
Q ss_pred CCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCC
Q 005896 282 KHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLG 361 (671)
Q Consensus 282 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~ 361 (671)
+..+....+..+....... .....+....+++.+.+.++....++... ....++.|++.+|.+....+ .
T Consensus 278 ~~~l~~~~l~~~~~~~~~~------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~--~ 346 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLD------GIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFPT--L 346 (635)
T ss_dssp GGGSEEEEEEEECCCSCEE------ECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCEESSCCC--C
T ss_pred ccchhhhhhhhhhhccccc------chhhhhhhhcccccccccccccccccccc---cchhhhhhhcccccccCcCc--c
Confidence 5566666666554421111 11122334467778888777765555433 36678888888887644332 3
Q ss_pred CCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCccccccc--ccccCCCCccCCCCccceeeEecCCCCcc
Q 005896 362 LMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHW--NTNIKGNEPVEIFPRLQELSIAECPQLSG 439 (671)
Q Consensus 362 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 439 (671)
.++.|+.+.+.++...... .. ..+++|+.++++.+...... ...... +.+|+++++..+ ....
T Consensus 347 ~l~~L~~l~l~~n~~~~~~--~~------~~l~~L~~L~ls~n~l~~~~~~~~~~~~------~~~L~~L~~~~~-~~~~ 411 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAF--SE------VDLPSLEFLDLSRNGLSFKGCCSQSDFG------TISLKYLDLSFN-GVIT 411 (635)
T ss_dssp BCTTCCEEEEESCCSCCBC--CC------CBCTTCCEEECCSSCCBEEEECCHHHHS------CSCCCEEECCSC-SEEE
T ss_pred cchhhhhcccccccCCCCc--cc------ccccccccchhhccccccccccccchhh------hhhhhhhhcccc-cccc
Confidence 5677888888877543221 11 22788888888876532211 111111 678888888874 3331
Q ss_pred CCC--CCCCCccEEEEeccCCc----CccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCC
Q 005896 440 ELP--GLLPSLETLVVRKCGKL----VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNL 513 (671)
Q Consensus 440 ~lp--~~l~~L~~L~l~~~~~l----~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l 513 (671)
..+ ..+++|+.+++..+... ...+..+++++.++++.|... ...+..+..+++|+.|++++|...
T Consensus 412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~---------~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR---------VAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCE---------ECCTTTTTTCTTCCEEECTTCEEG
T ss_pred ccccccccccccchhhhhccccccccccccccccccccccccccccc---------cccccccccchhhhhhhhhhcccc
Confidence 222 45788888888876443 245667889999999988843 233456688999999999999666
Q ss_pred cccCCC--CCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCcc
Q 005896 514 VSFPEE--GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIF 591 (671)
Q Consensus 514 ~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~ 591 (671)
..+++. ..+++|++|++++| .++.+++..|.++++|++|++++ |.+..++...+ ..+++|++|++++ |+++.
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~--N~l~~l~~~~~--~~l~~L~~L~Ls~-N~l~~ 556 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH--NNFFSLDTFPY--KCLNSLQVLDYSL-NHIMT 556 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT--SCCCBCCCGGG--TTCTTCCEEECTT-SCCCB
T ss_pred cccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC--CcCCCCChhHH--hCCCCCCEEECCC-CcCCC
Confidence 554333 56789999999777 46677667799999999999998 78888877444 5789999999999 77988
Q ss_pred CCccCCCCC-CccCeEeecCCC
Q 005896 592 LSSMGFQNL-TSLQYLRIGNCP 612 (671)
Q Consensus 592 l~~~~l~~l-~~L~~L~l~~c~ 612 (671)
++...+..+ ++|++|++++||
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCC
T ss_pred CCHHHHHhhhCcCCEEEeeCCC
Confidence 876888887 689999999985
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=4.6e-30 Score=270.42 Aligned_cols=407 Identities=19% Similarity=0.164 Sum_probs=213.7
Q ss_pred CceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCce-------------eEEEe
Q 005896 75 ERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKML-------------RMLSL 141 (671)
Q Consensus 75 ~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-------------~~L~L 141 (671)
..++.+.+..+.+ + ..++.+.++++|+.|.+.+ +...+. .+..+..+++| +.|++
T Consensus 11 ~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~---------n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAW---------SEWERN-APPGNGEQREMAVSRLRDCLDRQAHELEL 78 (454)
T ss_dssp -------------------------CCHHHHHHHH---------HHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred ccchhhhcccCch-h-hCChhHhcccchhhhhccC---------Cccccc-CCcccccchhcchhhhhhhhccCCCEEEe
Confidence 4566666766655 2 3456778888888888877 333233 33445666654 88888
Q ss_pred cCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccC
Q 005896 142 QGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMP 221 (671)
Q Consensus 142 ~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p 221 (671)
++|.++.+|.. .++|++|++++|.++.+|.. +.+|++|++++| .+..+|.. .++|++|++++|. +..+|
T Consensus 79 ~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp 147 (454)
T 1jl5_A 79 NNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ-LEKLP 147 (454)
T ss_dssp TTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC-CSSCC
T ss_pred cCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC-CCCCc
Confidence 88888777752 36788888888888887753 377888888887 66666642 2678888888887 55577
Q ss_pred ccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCc
Q 005896 222 FGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRD 301 (671)
Q Consensus 222 ~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 301 (671)
+++++++|++|++..+.....+. ...+|+.|++++|.+.+
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~-----------------------------------~~~~L~~L~L~~n~l~~---- 187 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPD-----------------------------------LPPSLEFIAAGNNQLEE---- 187 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCC-----------------------------------CCTTCCEEECCSSCCSS----
T ss_pred -ccCCCCCCCEEECCCCcCcccCC-----------------------------------CcccccEEECcCCcCCc----
Confidence 58888888888765544322111 01267777777777632
Q ss_pred hhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceecc
Q 005896 302 AVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIE 381 (671)
Q Consensus 302 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 381 (671)
+..+..+++|+.|+++++....+|.. .++|++|++++|.+. .+|.++.+++|++|++++|... .++
T Consensus 188 -------l~~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~-~l~ 253 (454)
T 1jl5_A 188 -------LPELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK-TLP 253 (454)
T ss_dssp -------CCCCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS-SCC
T ss_pred -------CccccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCC-ccc
Confidence 12355667788888887777666643 347888888888765 5566777888888888877432 222
Q ss_pred ccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCc
Q 005896 382 SEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVV 461 (671)
Q Consensus 382 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~ 461 (671)
. .+++|+.|+++++.. ..+ ... +++|++|++++ ++++ .+|...++|+.|++++|....
T Consensus 254 ~---------~~~~L~~L~l~~N~l-~~l----~~~-----~~~L~~L~ls~-N~l~-~l~~~~~~L~~L~l~~N~l~~- 311 (454)
T 1jl5_A 254 D---------LPPSLEALNVRDNYL-TDL----PEL-----PQSLTFLDVSE-NIFS-GLSELPPNLYYLNASSNEIRS- 311 (454)
T ss_dssp S---------CCTTCCEEECCSSCC-SCC----CCC-----CTTCCEEECCS-SCCS-EESCCCTTCCEEECCSSCCSE-
T ss_pred c---------cccccCEEECCCCcc-ccc----Ccc-----cCcCCEEECcC-CccC-cccCcCCcCCEEECcCCcCCc-
Confidence 1 156777777776542 111 111 56777777777 4666 344444677777777775432
Q ss_pred cCCCC-CCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcc--c
Q 005896 462 PLSSY-PMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYK--T 538 (671)
Q Consensus 462 ~~~~~-~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~--~ 538 (671)
++.+ ++|++|++++|. +..+|.. +++|+.|++++| .++.+|. .+++|++|++++|+..+ .
T Consensus 312 -i~~~~~~L~~L~Ls~N~----------l~~lp~~---~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l~~l~~ 374 (454)
T 1jl5_A 312 -LCDLPPSLEELNVSNNK----------LIELPAL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPLREFPD 374 (454)
T ss_dssp -ECCCCTTCCEEECCSSC----------CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSSCCC
T ss_pred -ccCCcCcCCEEECCCCc----------ccccccc---CCcCCEEECCCC-ccccccc--hhhhccEEECCCCCCCcCCC
Confidence 3333 477777777766 3445543 467777777777 5566666 56777777776665433 2
Q ss_pred ccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCC
Q 005896 539 LVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFP 618 (671)
Q Consensus 539 ~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~ 618 (671)
+|. .+..| +. ++..+.+|. .+++|++|++++ +.++.++ .+ -++|+.|.+.+|.....++
T Consensus 375 ip~-------~l~~L--~~-n~~~~~i~~------~~~~L~~L~ls~-N~l~~~~--~i--P~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 375 IPE-------SVEDL--RM-NSHLAEVPE------LPQNLKQLHVET-NPLREFP--DI--PESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp CCT-------TCCEE--EC-CC----------------------------------------------------------
T ss_pred ChH-------HHHhh--hh-ccccccccc------ccCcCCEEECCC-CcCCccc--cc--hhhHhheeCcCcccCCccc
Confidence 332 12222 22 344444554 458899999999 5576543 11 1457778888885444433
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=3.3e-29 Score=266.56 Aligned_cols=120 Identities=20% Similarity=0.324 Sum_probs=87.5
Q ss_pred ccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhh
Q 005896 98 EIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKC 177 (671)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~ 177 (671)
.++++++|.+.+ +.+ ..++ .+..+++|++|++++|.+..+|. +..+++|++|++++|.++.++. ++
T Consensus 44 ~l~~l~~L~l~~---------~~i-~~l~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~ 109 (466)
T 1o6v_A 44 DLDQVTTLQADR---------LGI-KSID--GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LA 109 (466)
T ss_dssp HHHTCCEEECCS---------SCC-CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred HhccccEEecCC---------CCC-ccCc--chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hc
Confidence 467788888777 222 2222 26677888888888888877765 7788888888888888887765 78
Q ss_pred ccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccce
Q 005896 178 KLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSN 235 (671)
Q Consensus 178 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~ 235 (671)
++++|++|++++| .+..+|. +..+++|++|++++|. +..+| .++.+++|+.|++
T Consensus 110 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l 163 (466)
T 1o6v_A 110 NLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSF 163 (466)
T ss_dssp TCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEE
T ss_pred CCCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeec
Confidence 8888888888887 6777766 7888888888888887 55554 3667777777764
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=6.6e-29 Score=261.83 Aligned_cols=121 Identities=19% Similarity=0.150 Sum_probs=81.0
Q ss_pred hhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccc
Q 005896 94 EVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP 173 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp 173 (671)
..+.++++|++|.+.+ +.+. .++ .|..+++|++|++++|.++.+| ++.+++|++|++++|.++.+|
T Consensus 36 ~~~~~l~~L~~L~Ls~---------n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHN---------SSIT-DMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp EEHHHHTTCCEEECCS---------SCCC-CCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred cChhHcCCCCEEEccC---------CCcc-cCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 3456677777777777 3332 222 4667777777777777777664 667777777777777777764
Q ss_pred hhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCcccee
Q 005896 174 ESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNF 236 (671)
Q Consensus 174 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~ 236 (671)
++.+++|++|++++| .+..+| ++.+++|++|++++|. +..++ ++++++|+.|++.
T Consensus 102 --~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCH 156 (457)
T ss_dssp --CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECT
T ss_pred --cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECC
Confidence 677777777777777 666665 6777777777777777 44443 5666666666543
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.9e-29 Score=264.54 Aligned_cols=101 Identities=21% Similarity=0.175 Sum_probs=64.6
Q ss_pred hhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceE
Q 005896 129 LLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRH 208 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 208 (671)
.+..+++|++|++++|.+..+| .++.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+| ++.+++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 3555666777777766666665 5666667777777777666664 666667777777766 555554 666667777
Q ss_pred EeecCCccccccCccCCCCCCCCccceeEe
Q 005896 209 LDIRGAKLLKEMPFGMKELNKLQTLSNFIV 238 (671)
Q Consensus 209 L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~ 238 (671)
|++++|. +..+| ++.+++|+.|++..+
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTS
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCC
Confidence 7776666 44454 666666666665443
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.3e-28 Score=261.98 Aligned_cols=349 Identities=19% Similarity=0.246 Sum_probs=215.8
Q ss_pred CCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEee
Q 005896 132 MFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDI 211 (671)
Q Consensus 132 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 211 (671)
.+++|+.|++.++.+..+| .+..+++|++|+|++|.++.+|. ++++++|++|++++| .+..++. ++.+++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 4678999999999999887 47889999999999999999976 999999999999999 7888887 999999999999
Q ss_pred cCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEE
Q 005896 212 RGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLE 291 (671)
Q Consensus 212 ~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (671)
++|. +..+|. +.++++|++|++..+.....+ .+..+++|+.|+++
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~---------------------------------~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS---------------------------------ALSGLTSLQQLSFG 164 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG---------------------------------GGTTCTTCSEEEEE
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCCccCCCh---------------------------------hhccCCcccEeecC
Confidence 9998 666654 788888888887665432211 14455567777765
Q ss_pred EecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEE
Q 005896 292 WGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAV 371 (671)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L 371 (671)
. .... ...+. .+++|++|++++|.+.+ ++.+..+++|++|++
T Consensus 165 ~-~~~~-----------~~~~~-------------------------~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l 206 (466)
T 1o6v_A 165 N-QVTD-----------LKPLA-------------------------NLTTLERLDISSNKVSD-ISVLAKLTNLESLIA 206 (466)
T ss_dssp E-SCCC-----------CGGGT-------------------------TCTTCCEEECCSSCCCC-CGGGGGCTTCSEEEC
T ss_pred C-cccC-----------chhhc-------------------------cCCCCCEEECcCCcCCC-ChhhccCCCCCEEEe
Confidence 3 2210 01122 34555555555555322 233455555555555
Q ss_pred eCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEE
Q 005896 372 KGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETL 451 (671)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L 451 (671)
++|......+ +. .+++|+.|+++++.... . ..+.. +++|++|++++| .+++ ++
T Consensus 207 ~~n~l~~~~~--~~------~l~~L~~L~l~~n~l~~-~-~~l~~------l~~L~~L~l~~n-~l~~-~~--------- 259 (466)
T 1o6v_A 207 TNNQISDITP--LG------ILTNLDELSLNGNQLKD-I-GTLAS------LTNLTDLDLANN-QISN-LA--------- 259 (466)
T ss_dssp CSSCCCCCGG--GG------GCTTCCEEECCSSCCCC-C-GGGGG------CTTCSEEECCSS-CCCC-CG---------
T ss_pred cCCccccccc--cc------ccCCCCEEECCCCCccc-c-hhhhc------CCCCCEEECCCC-cccc-ch---------
Confidence 5553222111 11 14444444444332110 0 00111 666777777763 4442 21
Q ss_pred EEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEc
Q 005896 452 VVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIG 531 (671)
Q Consensus 452 ~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 531 (671)
.+..+++|++|++++|. +..++. +..+++|+.|++++| .++.++....+++|+.|+++
T Consensus 260 ----------~~~~l~~L~~L~l~~n~----------l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 260 ----------PLSGLTKLTELKLGANQ----------ISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLY 317 (466)
T ss_dssp ----------GGTTCTTCSEEECCSSC----------CCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECC
T ss_pred ----------hhhcCCCCCEEECCCCc----------cCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECc
Confidence 13445566666666655 233443 556667777777776 44444444556677777776
Q ss_pred cCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCC
Q 005896 532 NFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNC 611 (671)
Q Consensus 532 ~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 611 (671)
+|+.. ..++ +..+++|+.|++++ +.+..++. + ..+++|++|++++ +.++.++ .+..+++|++|++++|
T Consensus 318 ~n~l~-~~~~--~~~l~~L~~L~l~~--n~l~~~~~--l--~~l~~L~~L~l~~-n~l~~~~--~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 318 FNNIS-DISP--VSSLTKLQRLFFYN--NKVSDVSS--L--ANLTNINWLSAGH-NQISDLT--PLANLTRITQLGLNDQ 385 (466)
T ss_dssp SSCCS-CCGG--GGGCTTCCEEECCS--SCCCCCGG--G--TTCTTCCEEECCS-SCCCBCG--GGTTCTTCCEEECCCE
T ss_pred CCcCC-Cchh--hccCccCCEeECCC--CccCCchh--h--ccCCCCCEEeCCC-CccCccc--hhhcCCCCCEEeccCC
Confidence 65433 3332 45677777777776 45555532 2 4567777777777 3466555 2677777777777777
Q ss_pred CCCCcCCC
Q 005896 612 PNLTSFPE 619 (671)
Q Consensus 612 ~~l~~~~~ 619 (671)
.++.+|.
T Consensus 386 -~~~~~p~ 392 (466)
T 1o6v_A 386 -AWTNAPV 392 (466)
T ss_dssp -EEECCCB
T ss_pred -cccCCch
Confidence 5555443
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=8.7e-29 Score=263.24 Aligned_cols=362 Identities=14% Similarity=0.134 Sum_probs=188.3
Q ss_pred EEEecCCCccccCcccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCcccccc-chhhhccCcceEEeecCCc
Q 005896 138 MLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRGAK 215 (671)
Q Consensus 138 ~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 215 (671)
.++.+++.++.+|. + .++|++|+|++|.++.+ |..++++++|++|++++|.....+ |..|..+++|++|++++|.
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 34555555566654 2 25566666666666654 555666666666666666322233 3345666666666666666
Q ss_pred cccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecC
Q 005896 216 LLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQ 295 (671)
Q Consensus 216 ~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (671)
+.+..|..++++++|++|++..+...... .....+..+++|+.|++++|.+
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------------------------~~~~~~~~l~~L~~L~L~~n~l 141 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAV-----------------------------LSGNFFKPLTSLEMLVLRDNNI 141 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHH-----------------------------HHSSTTTTCTTCCEEECCSSBC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccc-----------------------------cCcccccCcccCCEEECCCCcc
Confidence 33333445555555555554322211000 0001123333444444433333
Q ss_pred CCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccC-CCC-CCCCCCCCccEEEEeCCCCCCCCC-CCCCC--CCccEEE
Q 005896 296 SDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARF-PPW-IGQHSFSEMKVLKLENCDNCAALP-SLGLM--SSLKILA 370 (671)
Q Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~-~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l--~~L~~L~ 370 (671)
..+ |.. +. .+++|++|++++|.+.+..+ .+..+ ++|+.|+
T Consensus 142 ---------------------------------~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 142 ---------------------------------KKIQPASFFL--NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp ---------------------------------CSCCCCGGGG--GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred ---------------------------------CccCcccccC--CCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 333 332 33 47888888888888776665 55555 6788888
Q ss_pred EeCCCCceeccccccCC--CccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCCC-----
Q 005896 371 VKGLKKLKSIESEVYGE--GFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPG----- 443 (671)
Q Consensus 371 L~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~----- 443 (671)
+++|......+..+... ..... +++|++|++++ +.+++..|.
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~------------------------------~~~L~~L~Ls~-n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFK------------------------------NTSITTLDLSG-NGFKESMAKRFFDA 235 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTT------------------------------TCEEEEEECTT-SCCCHHHHHHHHHH
T ss_pred cccCcccccchhhccccccccccc------------------------------cceeeeEecCC-Ccccccchhhhhcc
Confidence 88775332211110000 00011 34555555555 233332221
Q ss_pred -CCCCccEEEEeccCCcCccC-------------C--CCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEe
Q 005896 444 -LLPSLETLVVRKCGKLVVPL-------------S--SYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGI 507 (671)
Q Consensus 444 -~l~~L~~L~l~~~~~l~~~~-------------~--~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l 507 (671)
..++|+.|++++|......+ . ..++|+.|++++|... ...|..+..+++|++|++
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF---------ALLKSVFSHFTDLEQLTL 306 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC---------EECTTTTTTCTTCCEEEC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc---------ccchhhcccCCCCCEEEC
Confidence 12445555554443221111 1 1356777777776632 234555667777777777
Q ss_pred ecCCCCcccCCC--CCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccC
Q 005896 508 QLCPNLVSFPEE--GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCG 585 (671)
Q Consensus 508 ~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~ 585 (671)
++| .++.++.. ..+++|++|++++|. ++.+++..+.++++|++|++++ +.+..++...+ ..+++|++|++++
T Consensus 307 s~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~--~~l~~L~~L~L~~ 380 (455)
T 3v47_A 307 AQN-EINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSY--NHIRALGDQSF--LGLPNLKELALDT 380 (455)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCS--SCCCEECTTTT--TTCTTCCEEECCS
T ss_pred CCC-cccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCC--CcccccChhhc--cccccccEEECCC
Confidence 777 34444322 345667777775553 3444444566677777777776 45555533233 4556677777776
Q ss_pred CCCCccCCccCCCCCCccCeEeecCCCC
Q 005896 586 FQNLIFLSSMGFQNLTSLQYLRIGNCPN 613 (671)
Q Consensus 586 c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 613 (671)
++++.++...+..+++|++|++++|+-
T Consensus 381 -N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 381 -NQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp -SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -CccccCCHhHhccCCcccEEEccCCCc
Confidence 556666645556667777777776643
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.3e-27 Score=254.19 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=78.8
Q ss_pred CCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-Ccc
Q 005896 74 FERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PIP 152 (671)
Q Consensus 74 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~ 152 (671)
+..++++.+..+.+.. ..+..+.++++|++|.+.+ +.....+++..|.++++|++|+|++|.+..+ |..
T Consensus 29 ~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~---------n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQ---------QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCC---------CSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CCccCEEEecCCccCc-CChhHhccCccccEEECcC---------CcccceECcccccccccCCEEeCCCCccCccChhh
Confidence 3455666665554433 2234455566666666655 3333344455566666666666666665444 455
Q ss_pred cCCCCccceeecCCCcccc-cchh--hhccccCcEEecCCCcccccc-chh-hhccCcceEEeecCCccccccCccCCCC
Q 005896 153 FEDLRLLRFLNLADTDIRS-LPES--KCKLLNLEILILRNCSRLIKL-PQE-MRNLINLRHLDIRGAKLLKEMPFGMKEL 227 (671)
Q Consensus 153 ~~~l~~L~~L~L~~n~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~-i~~l~~L~~L~L~~~~~~~~~p~~l~~l 227 (671)
|+.+++|++|+|++|.++. +|.. ++.+++|++|++++| .+..+ |.. ++.+++|++|++++|.+.+..|..+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 5666666666666666553 2333 556666666666665 34333 433 4556666666666665333334444433
Q ss_pred --CCCCccc
Q 005896 228 --NKLQTLS 234 (671)
Q Consensus 228 --~~L~~L~ 234 (671)
.+|+.|+
T Consensus 178 ~~~~L~~L~ 186 (455)
T 3v47_A 178 QGKHFTLLR 186 (455)
T ss_dssp TTCEEEEEE
T ss_pred ccccccccc
Confidence 3344443
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=4.5e-28 Score=251.91 Aligned_cols=309 Identities=19% Similarity=0.174 Sum_probs=214.8
Q ss_pred cccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCccccc-ch
Q 005896 97 NEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL-PE 174 (671)
Q Consensus 97 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~ 174 (671)
..+++++.|.+.+ +.+ ..+++.+|..+++|++|++++|.+..++ ..|..+++|++|+|++|.++.+ |.
T Consensus 42 ~~l~~l~~l~l~~---------~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 42 ITLNNQKIVTFKN---------STM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GGGCCCSEEEEES---------CEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCCceEEEecC---------Cch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 3678999999988 433 5677888999999999999999998887 5789999999999999999988 56
Q ss_pred hhhccccCcEEecCCCccccccchh-hhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhh
Q 005896 175 SKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSL 253 (671)
Q Consensus 175 ~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L 253 (671)
.++++++|++|++++| .+..+|.. ++.+++|++|++++|.+.+..|..+..+++|++|++..+.....
T Consensus 112 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------- 180 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------- 180 (390)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----------
T ss_pred HhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----------
Confidence 6899999999999999 88889887 48999999999999994444445589999999998765543221
Q ss_pred HhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCC
Q 005896 254 NLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPP 333 (671)
Q Consensus 254 ~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 333 (671)
.+..+++|+.|++++|.+. .+.....|+.|+++++....+|.
T Consensus 181 ------------------------~~~~l~~L~~L~l~~n~l~--------------~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 181 ------------------------DLSLIPSLFHANVSYNLLS--------------TLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp ------------------------CGGGCTTCSEEECCSSCCS--------------EEECCSSCSEEECCSSCCCEEEC
T ss_pred ------------------------ccccccccceeeccccccc--------------ccCCCCcceEEECCCCeeeeccc
Confidence 1344567778888777651 22334567777777777666655
Q ss_pred CCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccc
Q 005896 334 WIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTN 413 (671)
Q Consensus 334 ~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 413 (671)
.. +++|+.|++++|.+.+ .+.++.+++|++|++++|......+..+..
T Consensus 223 ~~----~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------- 270 (390)
T 3o6n_A 223 PV----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK--------------------------- 270 (390)
T ss_dssp CC----CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT---------------------------
T ss_pred cc----cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccc---------------------------
Confidence 33 4677777777777654 356667777777777777543333322222
Q ss_pred cCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCc
Q 005896 414 IKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALP 493 (671)
Q Consensus 414 ~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~ 493 (671)
+++|++|++++ ++++ .+| ..+..+++|++|++++|. +..+|
T Consensus 271 ---------l~~L~~L~L~~-n~l~-~~~------------------~~~~~l~~L~~L~L~~n~----------l~~~~ 311 (390)
T 3o6n_A 271 ---------MQRLERLYISN-NRLV-ALN------------------LYGQPIPTLKVLDLSHNH----------LLHVE 311 (390)
T ss_dssp ---------CSSCCEEECCS-SCCC-EEE------------------CSSSCCTTCCEEECCSSC----------CCCCG
T ss_pred ---------cccCCEEECCC-CcCc-ccC------------------cccCCCCCCCEEECCCCc----------ceecC
Confidence 55666666666 3444 222 112334556666666655 34556
Q ss_pred ccCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcc
Q 005896 494 NDMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYK 537 (671)
Q Consensus 494 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~ 537 (671)
..+..+++|+.|++++| .++.++ ...+++|+.|++++|+.-.
T Consensus 312 ~~~~~l~~L~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp GGHHHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEECCSSCEEH
T ss_pred ccccccCcCCEEECCCC-ccceeC-chhhccCCEEEcCCCCccc
Confidence 55666777777777777 345554 3345677777776665433
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.5e-27 Score=242.29 Aligned_cols=82 Identities=22% Similarity=0.372 Sum_probs=60.9
Q ss_pred hcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEE
Q 005896 130 LPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHL 209 (671)
Q Consensus 130 ~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 209 (671)
+..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++| .+..+|. +..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISA-LQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchH-HcCCCcCCEE
Confidence 3456777788888777777653 6677778888888887777765 777788888888777 6666664 7777778888
Q ss_pred eecCCc
Q 005896 210 DIRGAK 215 (671)
Q Consensus 210 ~L~~~~ 215 (671)
++++|.
T Consensus 116 ~l~~n~ 121 (347)
T 4fmz_A 116 YLNEDN 121 (347)
T ss_dssp ECTTSC
T ss_pred ECcCCc
Confidence 777776
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.8e-26 Score=244.16 Aligned_cols=308 Identities=20% Similarity=0.242 Sum_probs=158.7
Q ss_pred eEEEecCCCccccCcccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCcccccc-chhhhccCcceEEeecCC
Q 005896 137 RMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRGA 214 (671)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~ 214 (671)
+.++.+++.+..+|..+. .++++|+|++|.++.+ |..|.++++|++|+|++| .+..+ |..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC
Confidence 355666666666666543 4667777777777765 456677777777777776 44443 555667777777777776
Q ss_pred ccccccCcc-CCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEe
Q 005896 215 KLLKEMPFG-MKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWG 293 (671)
Q Consensus 215 ~~~~~~p~~-l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 293 (671)
. +..+|.+ +.++++|++|++..+......
T Consensus 91 ~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~------------------------------------------------- 120 (477)
T 2id5_A 91 R-LKLIPLGVFTGLSNLTKLDISENKIVILL------------------------------------------------- 120 (477)
T ss_dssp C-CCSCCTTSSTTCTTCCEEECTTSCCCEEC-------------------------------------------------
T ss_pred c-CCccCcccccCCCCCCEEECCCCccccCC-------------------------------------------------
Confidence 6 4455543 444444444443221110000
Q ss_pred cCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCC-CCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEE
Q 005896 294 SQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPP-WIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAV 371 (671)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L 371 (671)
...+..+++|+.|+++++....++. .+. .+++|++|++++|.+....+ .+..+++|+.|++
T Consensus 121 ---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 121 ---------------DYMFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp ---------------TTTTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred ---------------hhHccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 0011112333333444443333322 222 34555555555554433322 3444455555555
Q ss_pred eCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEE
Q 005896 372 KGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETL 451 (671)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L 451 (671)
++|......+ ..+.. +++|++|++++|+.+. .+|.
T Consensus 184 ~~n~i~~~~~------------------------------~~~~~------l~~L~~L~l~~~~~~~-~~~~-------- 218 (477)
T 2id5_A 184 RHLNINAIRD------------------------------YSFKR------LYRLKVLEISHWPYLD-TMTP-------- 218 (477)
T ss_dssp ESCCCCEECT------------------------------TCSCS------CTTCCEEEEECCTTCC-EECT--------
T ss_pred CCCcCcEeCh------------------------------hhccc------CcccceeeCCCCcccc-ccCc--------
Confidence 5443211110 00111 5556666666543333 2321
Q ss_pred EEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcc-cCCCCCCCCeeEeecCCCCcccCCC--CCCCCcceE
Q 005896 452 VVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPN-DMHKLNSLRDLGIQLCPNLVSFPEE--GFPTNLTTL 528 (671)
Q Consensus 452 ~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L 528 (671)
......+|+.|++++|. ++.+|. .+..+++|+.|++++| .++.++.. ..+++|+.|
T Consensus 219 ----------~~~~~~~L~~L~l~~n~----------l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 277 (477)
T 2id5_A 219 ----------NCLYGLNLTSLSITHCN----------LTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEI 277 (477)
T ss_dssp ----------TTTTTCCCSEEEEESSC----------CCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEE
T ss_pred ----------ccccCccccEEECcCCc----------ccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEE
Confidence 11123367777777776 455553 4567777777777777 34444433 345667777
Q ss_pred EEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccC
Q 005896 529 VIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCG 585 (671)
Q Consensus 529 ~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~ 585 (671)
++++|. ++.+.+..+.++++|+.|++++ +.++.++...+ ..+++|++|++++
T Consensus 278 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~--~~l~~L~~L~l~~ 329 (477)
T 2id5_A 278 QLVGGQ-LAVVEPYAFRGLNYLRVLNVSG--NQLTTLEESVF--HSVGNLETLILDS 329 (477)
T ss_dssp ECCSSC-CSEECTTTBTTCTTCCEEECCS--SCCSCCCGGGB--SCGGGCCEEECCS
T ss_pred ECCCCc-cceECHHHhcCcccCCEEECCC--CcCceeCHhHc--CCCcccCEEEccC
Confidence 775543 4444444566677777777766 55666655222 3456666666666
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-26 Score=241.45 Aligned_cols=226 Identities=12% Similarity=0.108 Sum_probs=150.6
Q ss_pred CCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCC
Q 005896 339 SFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGN 417 (671)
Q Consensus 339 ~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 417 (671)
.+++|++|++++|.+.+..+ .++.+++|++|++++|.... ++ + . .
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~------------------------------~-~ 184 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--L------------------------------S-L 184 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--G------------------------------G-G
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--c------------------------------c-c
Confidence 46778888888888766655 58888899999998875321 10 0 0 0
Q ss_pred CccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcccCC
Q 005896 418 EPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMH 497 (671)
Q Consensus 418 ~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~ 497 (671)
+++|++|++++ +.++ .++ ..++|++|++++|. +..+|..
T Consensus 185 -----l~~L~~L~l~~-n~l~-~~~----------------------~~~~L~~L~l~~n~----------l~~~~~~-- 223 (390)
T 3o6n_A 185 -----IPSLFHANVSY-NLLS-TLA----------------------IPIAVEELDASHNS----------INVVRGP-- 223 (390)
T ss_dssp -----CTTCSEEECCS-SCCS-EEE----------------------CCSSCSEEECCSSC----------CCEEECC--
T ss_pred -----ccccceeeccc-cccc-ccC----------------------CCCcceEEECCCCe----------eeecccc--
Confidence 66666666666 3444 111 12244455555544 2333332
Q ss_pred CCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCC
Q 005896 498 KLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTS 577 (671)
Q Consensus 498 ~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~ 577 (671)
.+++|+.|++++| .++..+....+++|++|++++|. ++.+++..+.++++|++|++++ +.++.++. .. ..+++
T Consensus 224 ~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~-~~--~~l~~ 296 (390)
T 3o6n_A 224 VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN--NRLVALNL-YG--QPIPT 296 (390)
T ss_dssp CCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCS--SCCCEEEC-SS--SCCTT
T ss_pred ccccccEEECCCC-CCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCC--CcCcccCc-cc--CCCCC
Confidence 2356777777776 44444444556777777776654 4444444678888999999987 67777765 33 46789
Q ss_pred cCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCCCCCCccEEEEeCChhhHHHHhhCCCCCCCc
Q 005896 578 LTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLPSSLLELHIYGCPNLKKACKRDQGKEWPK 651 (671)
Q Consensus 578 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 651 (671)
|++|++++ +.++.+| ..+..+++|++|++++| .++.++ ...+++|+.|++++++ +.+.|.......|.+
T Consensus 297 L~~L~L~~-n~l~~~~-~~~~~l~~L~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 297 LKVLDLSH-NHLLHVE-RNQPQFDRLENLYLDHN-SIVTLK-LSTHHTLKNLTLSHND-WDCNSLRALFRNVAR 365 (390)
T ss_dssp CCEEECCS-SCCCCCG-GGHHHHTTCSEEECCSS-CCCCCC-CCTTCCCSEEECCSSC-EEHHHHHHHTTTCCT
T ss_pred CCEEECCC-CcceecC-ccccccCcCCEEECCCC-ccceeC-chhhccCCEEEcCCCC-ccchhHHHHHHHHHh
Confidence 99999999 5788887 56778899999999999 677776 3457899999999987 777776655555544
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=8.1e-27 Score=238.55 Aligned_cols=128 Identities=17% Similarity=0.261 Sum_probs=101.1
Q ss_pred hhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccc
Q 005896 94 EVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP 173 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp 173 (671)
..+..+++|++|.+.+ +.+ ..++ .+..+++|++|++++|.+..+|. +..+++|++|++++|.++.+|
T Consensus 38 ~~~~~l~~L~~L~l~~---------~~i-~~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 38 VTQEELESITKLVVAG---------EKV-ASIQ--GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp ECHHHHTTCSEEECCS---------SCC-CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred ccchhcccccEEEEeC---------Ccc-ccch--hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch
Confidence 4455788899999888 332 2222 37889999999999999988876 889999999999999998885
Q ss_pred hhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEe
Q 005896 174 ESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIV 238 (671)
Q Consensus 174 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~ 238 (671)
.+..+++|++|++++| .+..+|. +..+++|++|++++|.....++ .+..+++|+.|++..+
T Consensus 105 -~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165 (347)
T ss_dssp -GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS
T ss_pred -HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC
Confidence 5889999999999998 7888877 8899999999999997455443 4777788887775544
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-26 Score=254.36 Aligned_cols=303 Identities=19% Similarity=0.159 Sum_probs=223.6
Q ss_pred cccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccc-h
Q 005896 97 NEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLP-E 174 (671)
Q Consensus 97 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~ 174 (671)
..+++++.|.+.+ +.+ ..+++.+|..+++|++|+|++|.+..+| ..|+.+++|++|+|++|.++.+| .
T Consensus 48 l~l~~l~~l~l~~---------~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 48 ITLNNQKIVTFKN---------STM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GGGCCCSEEEESS---------CEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCCceEEEeeC---------CCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 3578999999988 433 6678888999999999999999998876 58999999999999999999885 5
Q ss_pred hhhccccCcEEecCCCccccccchh-hhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhh
Q 005896 175 SKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSL 253 (671)
Q Consensus 175 ~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L 253 (671)
.++++++|++|+|++| .+..+|.. ++.+++|++|++++|.+.+..|..++.+++|+.|++..+.....
T Consensus 118 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------- 186 (597)
T 3oja_B 118 VFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------- 186 (597)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----------
T ss_pred HHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----------
Confidence 6799999999999999 88888877 58999999999999995555555699999999998765543221
Q ss_pred HhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCC
Q 005896 254 NLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPP 333 (671)
Q Consensus 254 ~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 333 (671)
.+..+++|+.|++++|.+. .+..+.+|+.|+++++.+..+|.
T Consensus 187 ------------------------~~~~l~~L~~L~l~~n~l~--------------~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 187 ------------------------DLSLIPSLFHANVSYNLLS--------------TLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp ------------------------CGGGCTTCSEEECCSSCCS--------------EEECCTTCSEEECCSSCCCEEEC
T ss_pred ------------------------ChhhhhhhhhhhcccCccc--------------cccCCchhheeeccCCccccccc
Confidence 1344568888888877662 23345679999999998877776
Q ss_pred CCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccc
Q 005896 334 WIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTN 413 (671)
Q Consensus 334 ~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 413 (671)
.+ .++|+.|++++|.+.+ ++.++.+++|+.|++++|......+..+.. +++|+.|+++++.. ..+...
T Consensus 229 ~~----~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l-~~l~~~ 296 (597)
T 3oja_B 229 PV----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNRL-VALNLY 296 (597)
T ss_dssp SC----CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECTTSCC-CEEECS
T ss_pred cc----CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcC------ccCCCEEECCCCCC-CCCCcc
Confidence 54 4689999999998765 467889999999999999766665555544 78888888877642 222221
Q ss_pred cCCCCccCCCCccceeeEecCCCCccCCCC---CCCCccEEEEeccCCcCccCCCCCCcceEEeccCC
Q 005896 414 IKGNEPVEIFPRLQELSIAECPQLSGELPG---LLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECK 478 (671)
Q Consensus 414 ~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~ 478 (671)
. +. +++|++|++++ +.++ .+|. .+++|+.|++++|......+..+++|+.|++++|+
T Consensus 297 ~-~~-----l~~L~~L~Ls~-N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 297 G-QP-----IPTLKVLDLSH-NHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp S-SC-----CTTCCEEECCS-SCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred c-cc-----CCCCcEEECCC-CCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 1 11 67777777777 4565 4552 34555555555555443334444445555554444
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=4.2e-26 Score=243.85 Aligned_cols=308 Identities=19% Similarity=0.180 Sum_probs=186.9
Q ss_pred cceeecCCCcccccchhhhccccCcEEecCCCcccccc-chhhhccCcceEEeecCCccccccCccCCCCCCCCccceeE
Q 005896 159 LRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFI 237 (671)
Q Consensus 159 L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~ 237 (671)
-+.++.+++.++.+|..+. .++++|+|++| .+..+ |..|.++++|++|++++|.+.+..|..+.++++|++|++..
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 3578888889999988664 68999999999 67666 45789999999999999984444455566666666665433
Q ss_pred ecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCC
Q 005896 238 VGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHER 317 (671)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 317 (671)
+. +
T Consensus 90 n~-------------------------------------------------------l---------------------- 92 (477)
T 2id5_A 90 NR-------------------------------------------------------L---------------------- 92 (477)
T ss_dssp SC-------------------------------------------------------C----------------------
T ss_pred Cc-------------------------------------------------------C----------------------
Confidence 22 1
Q ss_pred CcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCc
Q 005896 318 IKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSL 396 (671)
Q Consensus 318 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L 396 (671)
..+|..... .+++|++|++++|.+....+ .+..+++|++|++++|......+..+.+
T Consensus 93 -----------~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------- 150 (477)
T 2id5_A 93 -----------KLIPLGVFT-GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG---------- 150 (477)
T ss_dssp -----------CSCCTTSST-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT----------
T ss_pred -----------CccCccccc-CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccC----------
Confidence 112221111 34555555555555444444 4555555555555555332221111111
Q ss_pred ceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCC----CCCCCccEEEEeccCCc---CccCCCCCCc
Q 005896 397 EILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP----GLLPSLETLVVRKCGKL---VVPLSSYPML 469 (671)
Q Consensus 397 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l---~~~~~~~~~L 469 (671)
+++|++|++++ ++++ .+| ..+++|+.|++++|... ...+..+++|
T Consensus 151 --------------------------l~~L~~L~l~~-n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 151 --------------------------LNSLEQLTLEK-CNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp --------------------------CTTCCEEEEES-CCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred --------------------------CCCCCEEECCC-CcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 33444444444 2333 222 12333333333333221 1345567778
Q ss_pred ceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCCC--CCCCCcceEEEccCcCcccccccccCCC
Q 005896 470 CRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEE--GFPTNLTTLVIGNFKLYKTLVQWGLHRL 547 (671)
Q Consensus 470 ~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l 547 (671)
+.|++++|..+ ..+|.......+|++|++++| .++.+|.. ..+++|+.|++++|. ++.++...+.++
T Consensus 203 ~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 271 (477)
T 2id5_A 203 KVLEISHWPYL---------DTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHEL 271 (477)
T ss_dssp CEEEEECCTTC---------CEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTC
T ss_pred ceeeCCCCccc---------cccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhcccc
Confidence 88888877654 556666656668888888888 56666532 456778888886654 555555567777
Q ss_pred CCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCC
Q 005896 548 TSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCP 612 (671)
Q Consensus 548 ~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 612 (671)
++|+.|++++ +.+..++...+ ..+++|++|++++ +.++.++...+..+++|++|++++|+
T Consensus 272 ~~L~~L~L~~--n~l~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 272 LRLQEIQLVG--GQLAVVEPYAF--RGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCCEEECCS--SCCSEECTTTB--TTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccCCEEECCC--CccceECHHHh--cCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCC
Confidence 8888888877 55655544233 4667788888887 56777776667777788888887774
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.5e-26 Score=248.59 Aligned_cols=225 Identities=12% Similarity=0.102 Sum_probs=143.2
Q ss_pred CCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCC
Q 005896 339 SFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGN 417 (671)
Q Consensus 339 ~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 417 (671)
.+++|++|++++|.+.+..| .++.+++|++|++++|.... ++ + +.
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~-------------------------------~~ 190 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--L-------------------------------SL 190 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--G-------------------------------GG
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--h-------------------------------hh
Confidence 47788888888888777666 68888999999998885321 11 0 01
Q ss_pred CccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcccCC
Q 005896 418 EPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMH 497 (671)
Q Consensus 418 ~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~ 497 (671)
+++|+.|++++ +.+++ ++ ..++|+.|++++|. +..+|..+
T Consensus 191 -----l~~L~~L~l~~-n~l~~-l~----------------------~~~~L~~L~ls~n~----------l~~~~~~~- 230 (597)
T 3oja_B 191 -----IPSLFHANVSY-NLLST-LA----------------------IPIAVEELDASHNS----------INVVRGPV- 230 (597)
T ss_dssp -----CTTCSEEECCS-SCCSE-EE----------------------CCTTCSEEECCSSC----------CCEEECSC-
T ss_pred -----hhhhhhhhccc-Ccccc-cc----------------------CCchhheeeccCCc----------cccccccc-
Confidence 66666666666 34441 11 12234444444444 22333222
Q ss_pred CCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCC
Q 005896 498 KLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTS 577 (671)
Q Consensus 498 ~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~ 577 (671)
.++|+.|++++| .++.++....+++|+.|++++|. ++.+++..+.++++|+.|++++ +.+..+|. .. ..+++
T Consensus 231 -~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~--N~l~~l~~-~~--~~l~~ 302 (597)
T 3oja_B 231 -NVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN--NRLVALNL-YG--QPIPT 302 (597)
T ss_dssp -CSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTT--SCCCEEEC-SS--SCCTT
T ss_pred -CCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCC--CCCCCCCc-cc--ccCCC
Confidence 246666666666 34444444455677777776554 3444444577888888888887 66666665 23 35788
Q ss_pred cCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCCCCCCccEEEEeCChhhHHHHhhCCCCCCC
Q 005896 578 LTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLPSSLLELHIYGCPNLKKACKRDQGKEWP 650 (671)
Q Consensus 578 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 650 (671)
|++|++++ +.++.+| ..+..+++|++|++++| .++.++. ..+++|+.|++++|+ +.+.|...+...|.
T Consensus 303 L~~L~Ls~-N~l~~i~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 303 LKVLDLSH-NHLLHVE-RNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHND-WDCNSLRALFRNVA 370 (597)
T ss_dssp CCEEECCS-SCCCCCG-GGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSC-EEHHHHHHHTTTCC
T ss_pred CcEEECCC-CCCCccC-cccccCCCCCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCC-CCChhHHHHHHHHh
Confidence 88888888 5677887 66778888899999888 6777663 456788999998887 66655544444443
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=5.2e-24 Score=215.81 Aligned_cols=96 Identities=27% Similarity=0.403 Sum_probs=61.3
Q ss_pred ceeEEEecCCCccccCcccCCCCccceeecCCCcccccch-hhhccccCcEEecCCCcccccc-chhhhccCcceEEeec
Q 005896 135 MLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPE-SKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIR 212 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~ 212 (671)
++++++++++.+..+|..+. ++|++|+|++|.++.+|. .++++++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 56677777777766665543 466777777777776643 5677777777777776 45444 5566777777777777
Q ss_pred CCccccccCccCCCCCCCCcccee
Q 005896 213 GAKLLKEMPFGMKELNKLQTLSNF 236 (671)
Q Consensus 213 ~~~~~~~~p~~l~~l~~L~~L~~~ 236 (671)
+|. +..+|..+. ++|++|++.
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECC
T ss_pred CCc-CCccChhhc--ccccEEECC
Confidence 776 556665543 455555543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=3.2e-24 Score=217.46 Aligned_cols=98 Identities=23% Similarity=0.298 Sum_probs=71.7
Q ss_pred ceeEEEecCCCccccCcccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCcccccc-chhhhccCcceEEeec
Q 005896 135 MLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIR 212 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~ 212 (671)
++++++++++.+..+|..+. ++|++|++++|.++.+ |..++++++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 67788888888888876653 5788888888888876 456888888888888887 55544 6667888888888888
Q ss_pred CCccccccCccCCCCCCCCccceeEe
Q 005896 213 GAKLLKEMPFGMKELNKLQTLSNFIV 238 (671)
Q Consensus 213 ~~~~~~~~p~~l~~l~~L~~L~~~~~ 238 (671)
+|. +..+|..+. ++|++|++..+
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l~~n 133 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRIHDN 133 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEECCSS
T ss_pred CCc-CCccCcccc--ccCCEEECCCC
Confidence 887 567776654 56666665443
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.3e-23 Score=211.72 Aligned_cols=194 Identities=23% Similarity=0.331 Sum_probs=141.9
Q ss_pred CCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEee
Q 005896 132 MFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDI 211 (671)
Q Consensus 132 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 211 (671)
..+.++.|+|++|.+..+|..+..+++|++|+|++|.++.+|..++.+++|++|+|++| .+..+|..++.+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45889999999999999999999999999999999999999999999999999999999 78899999999999999999
Q ss_pred cCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEE
Q 005896 212 RGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLE 291 (671)
Q Consensus 212 ~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (671)
++|...+.+|..+....- ...+.++++|+.|+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~----------------------------------------------~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 158 RACPELTELPEPLASTDA----------------------------------------------SGEHQGLVNLQSLRLE 191 (328)
T ss_dssp EEETTCCCCCSCSEEEC-----------------------------------------------CCCEEESTTCCEEEEE
T ss_pred CCCCCccccChhHhhccc----------------------------------------------hhhhccCCCCCEEECc
Confidence 998878888876543100 0114455677777777
Q ss_pred EecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEE
Q 005896 292 WGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILA 370 (671)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~ 370 (671)
+|.+... ...+..+++|+.|++++|....+|..+. .+++|++|++++|.+.+.+| .++.+++|++|+
T Consensus 192 ~n~l~~l----------p~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 192 WTGIRSL----------PASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp EECCCCC----------CGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCcCcc----------hHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 7766311 1123334556666666666555655554 36666666666666666555 566666666666
Q ss_pred EeCCCCceeccccc
Q 005896 371 VKGLKKLKSIESEV 384 (671)
Q Consensus 371 L~~~~~~~~~~~~~ 384 (671)
+++|...+.++..+
T Consensus 260 L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 260 LKDCSNLLTLPLDI 273 (328)
T ss_dssp CTTCTTCCBCCTTG
T ss_pred CCCCCchhhcchhh
Confidence 66666555555443
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=5.6e-25 Score=242.18 Aligned_cols=251 Identities=13% Similarity=0.039 Sum_probs=113.0
Q ss_pred CCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCC
Q 005896 339 SFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGN 417 (671)
Q Consensus 339 ~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 417 (671)
.+++|+.|.++++.. ..+| .+..+++|++|++++|........... ..+++|+.|++.++.. ......+...
T Consensus 268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~-----~~~~~L~~L~L~~~~~-~~~l~~~~~~ 340 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLI-----QKCPNLEVLETRNVIG-DRGLEVLAQY 340 (592)
T ss_dssp CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH-----TTCTTCCEEEEEGGGH-HHHHHHHHHH
T ss_pred ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH-----HhCcCCCEEeccCccC-HHHHHHHHHh
Confidence 355666666665432 2233 445566666666666652111110111 1256666666652110 0001111111
Q ss_pred CccCCCCccceeeEec----------CCCCccC-C---CCCCCCccEEEEeccCCcCcc---CC-CCCCcceEEeccCCC
Q 005896 418 EPVEIFPRLQELSIAE----------CPQLSGE-L---PGLLPSLETLVVRKCGKLVVP---LS-SYPMLCRLEVDECKE 479 (671)
Q Consensus 418 ~~~~~~~~L~~L~l~~----------c~~l~~~-l---p~~l~~L~~L~l~~~~~l~~~---~~-~~~~L~~L~l~~~~~ 479 (671)
+++|++|++++ |+.+++. + ...+++|++|++..+...... +. .+++|+.|+++++.
T Consensus 341 -----~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~- 414 (592)
T 3ogk_B 341 -----CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD- 414 (592)
T ss_dssp -----CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS-
T ss_pred -----CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC-
Confidence 66677777774 5555531 1 124566666666333222111 11 25666666665332
Q ss_pred cccccCCCCCcc------CcccCCCCCCCCeeEeecCCC-CcccC--C-CCCCCCcceEEEccCcCcccccccccCCCCC
Q 005896 480 LVDICGCDKLEA------LPNDMHKLNSLRDLGIQLCPN-LVSFP--E-EGFPTNLTTLVIGNFKLYKTLVQWGLHRLTS 549 (671)
Q Consensus 480 ~~~i~~~~~l~~------l~~~~~~l~~L~~L~l~~~~~-l~~~~--~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 549 (671)
.++.++. ++..+..+++|+.|++++|.. ++... . ...+++|++|++++|+......+..+.++++
T Consensus 415 -----~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 415 -----REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp -----CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred -----CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 0111222 222234566777777766532 22110 0 0235667777776555332222223456667
Q ss_pred cCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCC-CCCCccCeEeecCC
Q 005896 550 LKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGF-QNLTSLQYLRIGNC 611 (671)
Q Consensus 550 L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l-~~l~~L~~L~l~~c 611 (671)
|++|++++ |. ++.-.. ......+++|++|++++|+ ++......+ ..++.|+...+..+
T Consensus 490 L~~L~l~~-n~-l~~~~~-~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 490 LQKLEMRG-CC-FSERAI-AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCEEEEES-CC-CBHHHH-HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCeeeccC-CC-CcHHHH-HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 77777776 44 322111 0011235666666666654 443321122 24455555444443
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=7.7e-24 Score=212.25 Aligned_cols=249 Identities=15% Similarity=0.117 Sum_probs=124.9
Q ss_pred CceeEEEeEeCCCCCc-cchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcc-ccCcc
Q 005896 75 ERVRHSSYACGGRDGK-NMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIG-ELPIP 152 (671)
Q Consensus 75 ~~~~~lsl~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~ 152 (671)
.+++.+.+..+.+.+. ..+..+.++++|++|.+.+ . +.... ..+..|..+++|++|++++|.+. .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~--~------n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--I------NNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE--E------TTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC--C------Ccccc-cCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 3455555555544321 1234455555555555552 0 11211 22334555555555555555553 45555
Q ss_pred cCCCCccceeecCCCccc-ccchhhhccccCcEEecCCCccccccchhhhccC-cceEEeecCCccccccCccCCCCCCC
Q 005896 153 FEDLRLLRFLNLADTDIR-SLPESKCKLLNLEILILRNCSRLIKLPQEMRNLI-NLRHLDIRGAKLLKEMPFGMKELNKL 230 (671)
Q Consensus 153 ~~~l~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~L~~~~~~~~~p~~l~~l~~L 230 (671)
|..+++|++|+|++|.++ .+|..++.+++|++|++++|...+.+|..++.++ +|++|++++|.+.+.+|..+..++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 555555555555555555 4455555555555555555522225555555555 555555555554445555554444 5
Q ss_pred CccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhc
Q 005896 231 QTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLD 310 (671)
Q Consensus 231 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (671)
+.|++..+.... ..+..+..+++|+.|++++|.+
T Consensus 200 ~~L~Ls~N~l~~-------------------------------~~~~~~~~l~~L~~L~L~~N~l--------------- 233 (313)
T 1ogq_A 200 AFVDLSRNMLEG-------------------------------DASVLFGSDKNTQKIHLAKNSL--------------- 233 (313)
T ss_dssp SEEECCSSEEEE-------------------------------CCGGGCCTTSCCSEEECCSSEE---------------
T ss_pred cEEECcCCcccC-------------------------------cCCHHHhcCCCCCEEECCCCce---------------
Confidence 554433222110 1112234444455555444443
Q ss_pred cCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCc
Q 005896 311 TLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGF 389 (671)
Q Consensus 311 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 389 (671)
...+..+. .+++|++|++++|.+.+.+| .++.+++|++|++++|...+.+|.. .
T Consensus 234 ------------------~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~---- 288 (313)
T 1ogq_A 234 ------------------AFDLGKVG--LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G---- 288 (313)
T ss_dssp ------------------CCBGGGCC--CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T----
T ss_pred ------------------eeecCccc--ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c----
Confidence 32322333 35666666666666655555 5666666666666666544444432 1
Q ss_pred cCCCCCcceeeccCccc
Q 005896 390 SMPFPSLEILSFESLPE 406 (671)
Q Consensus 390 ~~~~~~L~~L~l~~~~~ 406 (671)
.+++|+.+++.+++.
T Consensus 289 --~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 289 --NLQRFDVSAYANNKC 303 (313)
T ss_dssp --TGGGSCGGGTCSSSE
T ss_pred --cccccChHHhcCCCC
Confidence 266666666666553
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=8.9e-24 Score=211.78 Aligned_cols=251 Identities=15% Similarity=0.172 Sum_probs=184.6
Q ss_pred CCccEEecccccccCCCCCcccch-hhhhhhhcCCCceeEEEecC-CCc-cccCcccCCCCccceeecCCCccc-ccchh
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITR-SVLSDLLPMFKMLRMLSLQG-YRI-GELPIPFEDLRLLRFLNLADTDIR-SLPES 175 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~-~~l-~~lp~~~~~l~~L~~L~L~~n~i~-~lp~~ 175 (671)
.+++.|.+.+ +.+.. ...+..|..+++|++|++++ |.+ +.+|..|+.+++|++|+|++|.++ .+|..
T Consensus 50 ~~l~~L~L~~---------~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSG---------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEEC---------CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCC---------CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 5788888888 43333 02345688888999999985 776 467888888889999999988888 67888
Q ss_pred hhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCC-CCCccceeEecCCcccccccCchhhH
Q 005896 176 KCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELN-KLQTLSNFIVGKGECASGLEDLKSLN 254 (671)
Q Consensus 176 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~~~~~~~~~~~~~~~~l~~L~ 254 (671)
++++++|++|++++|.....+|..++.+++|++|++++|.+.+.+|..+++++ +|+.|++..+.....
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~----------- 189 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK----------- 189 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-----------
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-----------
Confidence 88889999999988833337888888888999999988886668888888777 777777544332210
Q ss_pred hcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCcc-CCC
Q 005896 255 LLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGAR-FPP 333 (671)
Q Consensus 255 ~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~ 333 (671)
.+..+..+. |+.|++ +++.... .|.
T Consensus 190 --------------------~~~~~~~l~-L~~L~L---------------------------------s~N~l~~~~~~ 215 (313)
T 1ogq_A 190 --------------------IPPTFANLN-LAFVDL---------------------------------SRNMLEGDASV 215 (313)
T ss_dssp --------------------CCGGGGGCC-CSEEEC---------------------------------CSSEEEECCGG
T ss_pred --------------------CChHHhCCc-ccEEEC---------------------------------cCCcccCcCCH
Confidence 111222332 444444 4444332 344
Q ss_pred CCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccc
Q 005896 334 WIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTN 413 (671)
Q Consensus 334 ~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 413 (671)
.+. .+++|+.|++++|.+.+.++.+..+++|++|++++|.....++..+.. +++|+.|+++++.....+...
T Consensus 216 ~~~--~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 216 LFG--SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ------LKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp GCC--TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG------CTTCCEEECCSSEEEEECCCS
T ss_pred HHh--cCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhc------CcCCCEEECcCCcccccCCCC
Confidence 455 589999999999999888888889999999999999877677766655 999999999998654344332
Q ss_pred cCCCCccCCCCccceeeEecCCCCcc
Q 005896 414 IKGNEPVEIFPRLQELSIAECPQLSG 439 (671)
Q Consensus 414 ~~~~~~~~~~~~L~~L~l~~c~~l~~ 439 (671)
+. +++|+.|++.+++.+.+
T Consensus 288 --~~-----l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 --GN-----LQRFDVSAYANNKCLCG 306 (313)
T ss_dssp --TT-----GGGSCGGGTCSSSEEES
T ss_pred --cc-----ccccChHHhcCCCCccC
Confidence 23 99999999999766764
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.8e-22 Score=203.11 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=78.8
Q ss_pred CceeEEEecCCCccccCc-ccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccchhhhccCcceEEee
Q 005896 134 KMLRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDI 211 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 211 (671)
+.|++|++++|.++.++. .|..+++|++|+|++|.++.+ |..++.+++|++|++++| .+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 678888888888877764 678888888888888888877 778888888888888888 7778887654 78888888
Q ss_pred cCCccccccCc-cCCCCCCCCccceeEec
Q 005896 212 RGAKLLKEMPF-GMKELNKLQTLSNFIVG 239 (671)
Q Consensus 212 ~~~~~~~~~p~-~l~~l~~L~~L~~~~~~ 239 (671)
++|. +..++. .+.++++|+.|++..+.
T Consensus 129 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 129 HENE-ITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp CSSC-CCBBCHHHHTTCTTCCEEECCSSC
T ss_pred CCCc-ccccCHhHhcCCccccEEECCCCc
Confidence 8888 445544 37777777777765443
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2.1e-22 Score=204.14 Aligned_cols=269 Identities=16% Similarity=0.161 Sum_probs=118.0
Q ss_pred CceeEEEecCCCccccC-cccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccchhhhccCcceEEee
Q 005896 134 KMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDI 211 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 211 (671)
++|++|++++|.+..++ ..|..+++|++|+|++|.++.+ |..++++++|++|++++| .+..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence 34555555555554443 3455555555555555555544 444555555555555555 4445554433 45555555
Q ss_pred cCCccccccCcc-CCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEE
Q 005896 212 RGAKLLKEMPFG-MKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTL 290 (671)
Q Consensus 212 ~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 290 (671)
++|. +..+|.. +.++++|+.|++..+...... ..+..+..+ +|+.|++
T Consensus 131 ~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------------~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 131 HDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSG-----------------------------FEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGG-----------------------------SCTTSSCSC-CCSCCBC
T ss_pred CCCc-cCccCHhHhCCCccCCEEECCCCccccCC-----------------------------CCcccccCC-ccCEEEC
Confidence 5555 3334332 455555555554333221100 000112222 4444444
Q ss_pred EEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCC-CCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccE
Q 005896 291 EWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFP-PWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKI 368 (671)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~ 368 (671)
++|.+...+. .+ .++|+.|+++++....++ ..+. .+++|++|++++|.+.+..+ .++.+++|++
T Consensus 180 ~~n~l~~l~~----------~~--~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 180 SEAKLTGIPK----------DL--PETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp CSSBCSSCCS----------SS--CSSCSCCBCCSSCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred cCCCCCccCc----------cc--cCCCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 4444322111 00 134445555555444443 2232 35555555555555544443 4555555555
Q ss_pred EEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCcc-CCC---CC
Q 005896 369 LAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSG-ELP---GL 444 (671)
Q Consensus 369 L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~lp---~~ 444 (671)
|++++|.. ..+|..+.. +++|+.|+++++.........+.+......+++|+.|++.+++.... ..| ..
T Consensus 246 L~L~~N~l-~~lp~~l~~------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 246 LHLDNNKL-SRVPAGLPD------LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp EECCSSCC-CBCCTTGGG------CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred EECCCCcC-eecChhhhc------CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 55555532 233333332 55555555555432221122222211111145666666666432211 122 34
Q ss_pred CCCccEEEEeccC
Q 005896 445 LPSLETLVVRKCG 457 (671)
Q Consensus 445 l~~L~~L~l~~~~ 457 (671)
+++|+.+++++|.
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 5666666666653
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.3e-22 Score=202.68 Aligned_cols=217 Identities=21% Similarity=0.312 Sum_probs=165.3
Q ss_pred CCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccc
Q 005896 155 DLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLS 234 (671)
Q Consensus 155 ~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 234 (671)
...++++|+|++|.++.+|..++++++|++|+|++| .+..+|..++++++|++|++++|. +..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 457899999999999999999999999999999999 777999999999999999999999 558888888888888887
Q ss_pred eeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCC
Q 005896 235 NFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQP 314 (671)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 314 (671)
+..+....... ..+.. . .....+..
T Consensus 157 L~~n~~~~~~p-------------------------------~~~~~------~------------------~~~~~~~~ 181 (328)
T 4fcg_A 157 IRACPELTELP-------------------------------EPLAS------T------------------DASGEHQG 181 (328)
T ss_dssp EEEETTCCCCC-------------------------------SCSEE------E------------------C-CCCEEE
T ss_pred CCCCCCccccC-------------------------------hhHhh------c------------------cchhhhcc
Confidence 66543221100 00000 0 01122345
Q ss_pred CCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCC
Q 005896 315 HERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFP 394 (671)
Q Consensus 315 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 394 (671)
+++|+.|+++++.+..+|.++. .+++|++|++++|.+.+..+.++.+++|++|++++|...+.++..+.+ ++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------l~ 253 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG------RA 253 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------CC
T ss_pred CCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcC------CC
Confidence 6889999999999888998877 589999999999998865557889999999999999888777765554 77
Q ss_pred CcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCCC
Q 005896 395 SLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPG 443 (671)
Q Consensus 395 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~ 443 (671)
+|+.|+++++.....+...+.. +++|++|++++|+.+. .+|.
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~------l~~L~~L~L~~n~~~~-~iP~ 295 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHR------LTQLEKLDLRGCVNLS-RLPS 295 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGG------CTTCCEEECTTCTTCC-CCCG
T ss_pred CCCEEECCCCCchhhcchhhhc------CCCCCEEeCCCCCchh-hccH
Confidence 7888888777665555444433 7777777777754433 6663
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.1e-24 Score=239.74 Aligned_cols=427 Identities=12% Similarity=0.039 Sum_probs=262.4
Q ss_pred hhhcccCCccEEeccccccc---CCC--CCcccchhhhhhhhcCCCceeEEEecCCCccc-cCcccCC-C-CccceeecC
Q 005896 94 EVFNEIGHLRTFLPLRLRIR---GGS--NTSYITRSVLSDLLPMFKMLRMLSLQGYRIGE-LPIPFED-L-RLLRFLNLA 165 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~---~~~--~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~~~~-l-~~L~~L~L~ 165 (671)
..+..+++|++|.+.+.... +.. .............+..+++|++|+|++|.++. .+..+.. + .+|++|+|+
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 44556788888888651000 000 00001122333445578888899988887643 2233433 3 348888888
Q ss_pred CCc-cc--ccchhhhccccCcEEecCCCcccc-c----cchhhhccCcceEEeecCCccc----cccCccCCCCCCCCcc
Q 005896 166 DTD-IR--SLPESKCKLLNLEILILRNCSRLI-K----LPQEMRNLINLRHLDIRGAKLL----KEMPFGMKELNKLQTL 233 (671)
Q Consensus 166 ~n~-i~--~lp~~i~~L~~L~~L~L~~~~~l~-~----lp~~i~~l~~L~~L~L~~~~~~----~~~p~~l~~l~~L~~L 233 (671)
+|. ++ .++..+..+++|++|+|++| .+. . ++..+..+++|++|++++|.+. ..++..+.++++|+.|
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 876 33 33444567888888988888 443 2 3344567888888888888743 2334445567777777
Q ss_pred ceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCC
Q 005896 234 SNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQ 313 (671)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (671)
++..+.... .+..+..+++|+.|+++....... .......+.
T Consensus 226 ~L~~~~~~~--------------------------------l~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~l~ 267 (592)
T 3ogk_B 226 KVGDFEILE--------------------------------LVGFFKAAANLEEFCGGSLNEDIG------MPEKYMNLV 267 (592)
T ss_dssp ECSSCBGGG--------------------------------GHHHHHHCTTCCEEEECBCCCCTT------CTTSSSCCC
T ss_pred eccCccHHH--------------------------------HHHHHhhhhHHHhhcccccccccc------hHHHHHHhh
Confidence 654332111 223356677888888875332110 012234566
Q ss_pred CCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC--CCCCCCCccEEEEeCCCCceeccccccCCCccC
Q 005896 314 PHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP--SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSM 391 (671)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 391 (671)
.+++|+.+.+.+.....+|..+. .+++|++|++++|.+..... .+..+++|++|+++++..-..++... .
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~------~ 339 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA------Q 339 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGG--GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH------H
T ss_pred ccccccccCccccchhHHHHHHh--hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH------H
Confidence 67889999998877667777766 58999999999998543222 36789999999998442211121111 2
Q ss_pred CCCCcceeeccC----------ccccccc-ccccCCCCccCCCCccceeeEecCCCCccCCC----CCCCCccEEEEec-
Q 005896 392 PFPSLEILSFES----------LPEWQHW-NTNIKGNEPVEIFPRLQELSIAECPQLSGELP----GLLPSLETLVVRK- 455 (671)
Q Consensus 392 ~~~~L~~L~l~~----------~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~- 455 (671)
.+++|++|++.+ +..+... ...+... +++|++|++. |+++++..+ ..+++|+.|+++.
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~-----~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-----CQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH-----CTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhh-----CccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 289999999994 4433321 1111111 8999999994 477775433 3488999999985
Q ss_pred --cCCcCcc---------CCCCCCcceEEeccCCC-cccccCCCCCccCcccC-CCCCCCCeeEeecCCCCcc--cCCC-
Q 005896 456 --CGKLVVP---------LSSYPMLCRLEVDECKE-LVDICGCDKLEALPNDM-HKLNSLRDLGIQLCPNLVS--FPEE- 519 (671)
Q Consensus 456 --~~~l~~~---------~~~~~~L~~L~l~~~~~-~~~i~~~~~l~~l~~~~-~~l~~L~~L~l~~~~~l~~--~~~~- 519 (671)
|..+... +..+++|+.|+++.|.. +. ...+..+ ..+++|++|++++|. ++. ++..
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~--------~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~ 484 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT--------DLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFS 484 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC--------HHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHH
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc--------HHHHHHHHHhCccceEeeccCCC-CCHHHHHHHH
Confidence 4444432 34489999999987652 11 1111122 458899999999994 443 2221
Q ss_pred CCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccC
Q 005896 520 GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCG 585 (671)
Q Consensus 520 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~ 585 (671)
..+++|++|++++|..........+..+++|++|++++ |. ++.... ......+|.++...+..
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~-n~-it~~~~-~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG-YR-ASMTGQ-DLMQMARPYWNIELIPS 547 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES-CB-CCTTCT-TGGGGCCTTEEEEEECC
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC-Cc-CCHHHH-HHHHHhCCCcEEEEecC
Confidence 45689999999999843233333456799999999999 65 554433 22223456666555554
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=5.7e-21 Score=207.09 Aligned_cols=73 Identities=22% Similarity=0.211 Sum_probs=57.1
Q ss_pred CceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecC
Q 005896 134 KMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRG 213 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 213 (671)
..+++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 458888888888888887765 788888888888888876 5678888888887 6777776 567777777777
Q ss_pred Cc
Q 005896 214 AK 215 (671)
Q Consensus 214 ~~ 215 (671)
|.
T Consensus 111 N~ 112 (622)
T 3g06_A 111 NP 112 (622)
T ss_dssp CC
T ss_pred Cc
Confidence 76
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=3.5e-21 Score=208.72 Aligned_cols=108 Identities=24% Similarity=0.177 Sum_probs=84.6
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhcc
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKL 179 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L 179 (671)
.+++.|.+.+ +.+ ..++...+ ++|++|++++|.++.+|. .+++|++|+|++|.|+.+|. .+
T Consensus 40 ~~l~~L~ls~---------n~L-~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l 100 (622)
T 3g06_A 40 NGNAVLNVGE---------SGL-TTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LP 100 (622)
T ss_dssp HCCCEEECCS---------SCC-SCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CC
T ss_pred CCCcEEEecC---------CCc-CccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CC
Confidence 4689999988 333 34444332 789999999999998887 57899999999999999987 78
Q ss_pred ccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccc
Q 005896 180 LNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLS 234 (671)
Q Consensus 180 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 234 (671)
++|++|++++| .+..+|. .+++|+.|++++|. +..+|..+ ++|++|+
T Consensus 101 ~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l---~~L~~L~ 147 (622)
T 3g06_A 101 PGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVLP---PGLQELS 147 (622)
T ss_dssp TTCCEEEECSC-CCCCCCC---CCTTCCEEECCSSC-CSCCCCCC---TTCCEEE
T ss_pred CCCCEEECcCC-cCCCCCC---CCCCcCEEECCCCC-CCcCCCCC---CCCCEEE
Confidence 99999999998 8888887 67889999999998 66666532 4444444
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.3e-24 Score=231.45 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=50.5
Q ss_pred CceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccch---hhhhhhhcCCCceeEEEecCCCcccc-C
Q 005896 75 ERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITR---SVLSDLLPMFKMLRMLSLQGYRIGEL-P 150 (671)
Q Consensus 75 ~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~~~~l~~L~~L~L~~~~l~~l-p 150 (671)
..++++.+..+.+........+..+++|++|.+.+ +.+.. ...+.++..+++|++|++++|.++.. +
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~---------~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD---------CGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEES---------SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccC---------CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 34455555555443322222244555566665555 22211 12334455555566666655555331 1
Q ss_pred ccc-CCCC----ccceeecCCCccc-----ccchhhhccccCcEEecCCC
Q 005896 151 IPF-EDLR----LLRFLNLADTDIR-----SLPESKCKLLNLEILILRNC 190 (671)
Q Consensus 151 ~~~-~~l~----~L~~L~L~~n~i~-----~lp~~i~~L~~L~~L~L~~~ 190 (671)
..+ ..+. +|++|+|++|.++ .+|..+..+++|++|++++|
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 111 1222 4555555555555 23455555555555555555
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=194.56 Aligned_cols=86 Identities=24% Similarity=0.285 Sum_probs=53.8
Q ss_pred CceeEEEecCCCccccCc-ccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccchh-hhccCcceEEe
Q 005896 134 KMLRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLD 210 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 210 (671)
++|++|++++|.++.+|. .|..+++|++|++++|.++.+ |..++++++|++|++++| .+..+|.. ++.+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 356666666666666653 566666666666666666655 345666666666666666 55555554 56666666666
Q ss_pred ecCCccccccC
Q 005896 211 IRGAKLLKEMP 221 (671)
Q Consensus 211 L~~~~~~~~~p 221 (671)
+++|. +..+|
T Consensus 131 L~~n~-l~~l~ 140 (353)
T 2z80_A 131 LLGNP-YKTLG 140 (353)
T ss_dssp CTTCC-CSSSC
T ss_pred CCCCC-CcccC
Confidence 66665 44444
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=195.02 Aligned_cols=129 Identities=19% Similarity=0.152 Sum_probs=103.8
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccchh-hh
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLPES-KC 177 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~-i~ 177 (671)
++|++|.+.+ +.+ ..+++..|..+++|++|++++|.++.++ ..|..+++|++|+|++|.++.+|.. ++
T Consensus 52 ~~L~~L~l~~---------n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDLSN---------NRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp TTCCEEECTT---------SCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred ccCcEEECCC---------CcC-cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 5899999988 443 4566667889999999999999987774 5688999999999999999988765 88
Q ss_pred ccccCcEEecCCCccccccch--hhhccCcceEEeecCCccccccC-ccCCCCCCCCccceeEec
Q 005896 178 KLLNLEILILRNCSRLIKLPQ--EMRNLINLRHLDIRGAKLLKEMP-FGMKELNKLQTLSNFIVG 239 (671)
Q Consensus 178 ~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~~~~~~ 239 (671)
.+++|++|++++| .+..+|. .+..+++|++|++++|..++.++ ..++++++|++|++..+.
T Consensus 122 ~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 122 PLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp TCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 8999999999998 7888886 57889999999999885455554 457777777777766554
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=8.6e-20 Score=192.38 Aligned_cols=243 Identities=19% Similarity=0.265 Sum_probs=163.9
Q ss_pred CcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCc
Q 005896 318 IKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSL 396 (671)
Q Consensus 318 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L 396 (671)
...++..+.....+|..+ .++++.|+|++|.+....+ .+..+++|++|+|++|......+..+.+ +++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~------l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG------LANL 114 (440)
T ss_dssp SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT------CSSC
T ss_pred CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC------CccC
Confidence 445666667777788765 3688999999998776655 7888999999999988654433333333 5666
Q ss_pred ceeeccCccccccc-ccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEec
Q 005896 397 EILSFESLPEWQHW-NTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVD 475 (671)
Q Consensus 397 ~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 475 (671)
++|+++++. +..+ ...+.+ +++|++|++++ +.++ .+| ...+..+++|+.|+++
T Consensus 115 ~~L~L~~n~-l~~~~~~~~~~------l~~L~~L~L~~-N~i~-~~~-----------------~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 115 NTLELFDNR-LTTIPNGAFVY------LSKLKELWLRN-NPIE-SIP-----------------SYAFNRIPSLRRLDLG 168 (440)
T ss_dssp CEEECCSSC-CSSCCTTTSCS------CSSCCEEECCS-CCCC-EEC-----------------TTTTTTCTTCCEEECC
T ss_pred CEEECCCCc-CCeeCHhHhhc------cccCceeeCCC-Cccc-ccC-----------------HHHhhhCcccCEeCCC
Confidence 666665543 2222 111222 55555555555 3444 222 1345556777777777
Q ss_pred cCCCcccccCCCCCccCcc-cCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcccccccccCCCCCcCeEE
Q 005896 476 ECKELVDICGCDKLEALPN-DMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLW 554 (671)
Q Consensus 476 ~~~~~~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 554 (671)
+|..+ ..++. .+..+++|++|++++| .++.+|....+++|+.|++++| .++.+++..+.++++|+.|+
T Consensus 169 ~~~~l---------~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 169 ELKRL---------SYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp CCTTC---------CEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCCc---------ceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCccChhhhccCccCCEEE
Confidence 65543 44444 4677888888888888 6777777677788888888766 45556555688888888888
Q ss_pred ecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCC
Q 005896 555 IAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCP 612 (671)
Q Consensus 555 l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 612 (671)
+++ +.+..++...+ ..+++|++|++++ ++++.++...+..+++|+.|++++|+
T Consensus 238 L~~--n~l~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 238 MIQ--SQIQVIERNAF--DNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTT--CCCCEECTTSS--TTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCC--CceeEEChhhh--cCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 887 66777665334 5678888888888 67888876777888888888888875
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=7.1e-21 Score=190.55 Aligned_cols=80 Identities=24% Similarity=0.320 Sum_probs=37.5
Q ss_pred ceeEEEecCCCccccCcc-cCCCCccceeecCCCccccc---chhhhccccCcEEecCCCccccccchhhhccCcceEEe
Q 005896 135 MLRMLSLQGYRIGELPIP-FEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLD 210 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~n~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 210 (671)
+|++|++++|.++.+|.. |..+++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEE
Confidence 444445554444444432 34444555555554444432 334444445555555444 4444444444445555555
Q ss_pred ecCCc
Q 005896 211 IRGAK 215 (671)
Q Consensus 211 L~~~~ 215 (671)
+++|.
T Consensus 108 l~~n~ 112 (306)
T 2z66_A 108 FQHSN 112 (306)
T ss_dssp CTTSE
T ss_pred CCCCc
Confidence 54444
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=2.1e-19 Score=190.11 Aligned_cols=244 Identities=20% Similarity=0.261 Sum_probs=161.8
Q ss_pred CcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCc
Q 005896 318 IKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSL 396 (671)
Q Consensus 318 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L 396 (671)
...++..+.....+|..+ .+++++|++++|.+.+..+ .++.+++|++|++++|......+..+.+ +++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------l~~L 125 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG------LASL 125 (452)
T ss_dssp SCEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTC
T ss_pred CcEEEECCCCcCccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC------cccC
Confidence 345666666667777654 3678888888888776655 6888888888888888554433333333 5555
Q ss_pred ceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEecc
Q 005896 397 EILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDE 476 (671)
Q Consensus 397 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~ 476 (671)
++|+++++.........+.+ +++|++|++++ +.++ .+| ...+..+++|+.|++++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~-N~l~-~~~-----------------~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEY------LSKLRELWLRN-NPIE-SIP-----------------SYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSS------CTTCCEEECCS-CCCC-EEC-----------------TTTTTTCTTCCEEECCC
T ss_pred CEEECCCCcCCccChhhhcc------cCCCCEEECCC-CCcc-eeC-----------------HhHHhcCCcccEEeCCC
Confidence 55555554311111111221 45555555555 2343 222 13455677777777777
Q ss_pred CCCcccccCCCCCccCcc-cCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcccccccccCCCCCcCeEEe
Q 005896 477 CKELVDICGCDKLEALPN-DMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWI 555 (671)
Q Consensus 477 ~~~~~~i~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 555 (671)
|..+ +.++. .+..+++|+.|++++| .++.+|....+++|+.|++++|. ++.+++..+.++++|+.|++
T Consensus 181 ~~~l---------~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 181 LKKL---------EYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp CTTC---------CEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEEC
T ss_pred CCCc---------cccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCcccccCccCCCEEEe
Confidence 6544 45544 4677888888888888 66777776777888888887665 45555556888888888888
Q ss_pred cccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCC
Q 005896 556 AVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCP 612 (671)
Q Consensus 556 ~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 612 (671)
++ +.+..++...+ ..+++|++|++++ ++++.++...+..+++|++|++++|+
T Consensus 250 ~~--n~l~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 250 MN--SQVSLIERNAF--DGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TT--SCCCEECTTTT--TTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CC--CcCceECHHHh--cCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 87 66666655344 5678888888888 57888886777888888888888885
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=4.6e-22 Score=199.90 Aligned_cols=256 Identities=13% Similarity=0.085 Sum_probs=154.6
Q ss_pred hhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhh
Q 005896 123 RSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMR 201 (671)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 201 (671)
...+...+..+++|++|++++|.+..++ ..|..+++|++|+|++|.++.++. ++.+++|++|++++| .+..+|.
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~--- 97 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV--- 97 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE---
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC---
Confidence 3444555666667777777777766554 456677777777777777765543 666777777777776 5555442
Q ss_pred ccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCC
Q 005896 202 NLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALRE 281 (671)
Q Consensus 202 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~ 281 (671)
.++|++|++++|. +..++.. .+++|+.|++..+...... +..+..
T Consensus 98 -~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~-------------------------------~~~~~~ 142 (317)
T 3o53_A 98 -GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLR-------------------------------DLDEGC 142 (317)
T ss_dssp -CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGG-------------------------------GBCTGG
T ss_pred -CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCcc-------------------------------chhhhc
Confidence 3667777777776 3333322 2455666655443322211 123445
Q ss_pred CCCCCceEEEEecCCCCCCchhhHHHHhccC-CCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCC
Q 005896 282 KHNLEALTLEWGSQSDSPRDAVLEEKVLDTL-QPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSL 360 (671)
Q Consensus 282 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l 360 (671)
+++|+.|++++|.+....+ ..+ ..+++|+.|++++|.+..++.... +++|++|++++|.+.+..+.+
T Consensus 143 l~~L~~L~Ls~N~l~~~~~---------~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~ 210 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNF---------AELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEF 210 (317)
T ss_dssp GSSEEEEECTTSCCCEEEG---------GGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGG
T ss_pred cCCCCEEECCCCCCCcccH---------HHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCcCCcchhhh
Confidence 5566666666666532111 111 234667777777777666655443 777888888888776655567
Q ss_pred CCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCccccccc-ccccCCCCccCCCCccceeeEecCCCCcc
Q 005896 361 GLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHW-NTNIKGNEPVEIFPRLQELSIAECPQLSG 439 (671)
Q Consensus 361 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 439 (671)
..+++|++|++++|.. ..++..+.. +++|+.|++++++..... ...+.. +++|+.|++.+++.+++
T Consensus 211 ~~l~~L~~L~L~~N~l-~~l~~~~~~------l~~L~~L~l~~N~~~~~~~~~~~~~------~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 211 QSAAGVTWISLRNNKL-VLIEKALRF------SQNLEHFDLRGNGFHCGTLRDFFSK------NQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGGTTCSEEECTTSCC-CEECTTCCC------CTTCCEEECTTCCCBHHHHHHHHHT------CHHHHHHHHHHHHHHHS
T ss_pred cccCcccEEECcCCcc-cchhhHhhc------CCCCCEEEccCCCccCcCHHHHHhc------cccceEEECCCchhccC
Confidence 7778888888887744 345544433 778888888776644121 222222 78888888887777776
Q ss_pred CCCC
Q 005896 440 ELPG 443 (671)
Q Consensus 440 ~lp~ 443 (671)
..|.
T Consensus 278 ~~~~ 281 (317)
T 3o53_A 278 QNEE 281 (317)
T ss_dssp SSSC
T ss_pred Cchh
Confidence 5554
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=6.5e-21 Score=190.84 Aligned_cols=225 Identities=16% Similarity=0.112 Sum_probs=147.5
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc---CcccCCCCccceeecCCCcccccchhh
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL---PIPFEDLRLLRFLNLADTDIRSLPESK 176 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~L~~n~i~~lp~~i 176 (671)
++|+.|.+.+ +.+ ..+++.+|..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+|..+
T Consensus 28 ~~l~~L~L~~---------n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 97 (306)
T 2z66_A 28 SSATRLELES---------NKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97 (306)
T ss_dssp TTCCEEECCS---------SCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred CCCCEEECCC---------Ccc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc
Confidence 6889998888 444 456677788999999999999988655 566667899999999999999888888
Q ss_pred hccccCcEEecCCCccccccch--hhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhH
Q 005896 177 CKLLNLEILILRNCSRLIKLPQ--EMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLN 254 (671)
Q Consensus 177 ~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~ 254 (671)
..+++|++|++++| .+..++. .+..+++|++|++++|.+.+..|..+..+++|++|++..+....
T Consensus 98 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------ 164 (306)
T 2z66_A 98 LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE------------ 164 (306)
T ss_dssp ETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG------------
T ss_pred CCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc------------
Confidence 89999999999998 7777664 67889999999999998555555668888888888764433221
Q ss_pred hcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCC
Q 005896 255 LLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPW 334 (671)
Q Consensus 255 ~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 334 (671)
...+..+..+++|+.|++++|.+.... ...+..+++|+.|+++++....++..
T Consensus 165 ------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 165 ------------------NFLPDIFTELRNLTFLDLSQCQLEQLS---------PTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ------------------GEECSCCTTCTTCCEEECTTSCCCEEC---------TTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ------------------ccchhHHhhCcCCCEEECCCCCcCCcC---------HHHhcCCCCCCEEECCCCccCccChh
Confidence 011123555566666666666552211 12233344555555555554444432
Q ss_pred CCCCCCCCccEEEEeCCCCCCCCC-CCCCCC-CccEEEEeCCC
Q 005896 335 IGQHSFSEMKVLKLENCDNCAALP-SLGLMS-SLKILAVKGLK 375 (671)
Q Consensus 335 ~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~-~L~~L~L~~~~ 375 (671)
... .+++|++|++++|.+.+..+ .+..++ +|++|++++|+
T Consensus 218 ~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 218 PYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GGT-TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hcc-CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 111 35555555555555544444 444442 55555555553
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.5e-22 Score=215.55 Aligned_cols=159 Identities=19% Similarity=0.053 Sum_probs=82.8
Q ss_pred CCCccEEEEeCCCCCCC----CC-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCccccccc----
Q 005896 340 FSEMKVLKLENCDNCAA----LP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHW---- 410 (671)
Q Consensus 340 l~~L~~L~l~~~~~~~~----~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---- 410 (671)
+++|++|++++|.+... ++ .+..+++|++|++++|......+..+.. ......++|+.|+++++......
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE-TLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH-HHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH-HhccCCccceeeEcCCCCCchHHHHHH
Confidence 56666777766665432 22 3455666777777766432211111111 01111356777777766532221
Q ss_pred ccccCCCCccCCCCccceeeEecCCCCccCCC--------CCCCCccEEEEeccCCc-------CccCCCCCCcceEEec
Q 005896 411 NTNIKGNEPVEIFPRLQELSIAECPQLSGELP--------GLLPSLETLVVRKCGKL-------VVPLSSYPMLCRLEVD 475 (671)
Q Consensus 411 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp--------~~l~~L~~L~l~~~~~l-------~~~~~~~~~L~~L~l~ 475 (671)
...+.. +++|++|++++| .+++..+ ...++|++|++++|... ...+..+++|++|+++
T Consensus 334 ~~~l~~------~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 334 SSVLAQ------NRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp HHHHHH------CSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred HHHHhh------CCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 111111 577888888874 5553211 12568888888888543 2234457888899998
Q ss_pred cCCCcccccCCCCCccCcccC-CCCCCCCeeEeecCC
Q 005896 476 ECKELVDICGCDKLEALPNDM-HKLNSLRDLGIQLCP 511 (671)
Q Consensus 476 ~~~~~~~i~~~~~l~~l~~~~-~~l~~L~~L~l~~~~ 511 (671)
+|+.... .+..+...+ .....|+.|.+.++.
T Consensus 407 ~N~i~~~-----~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 407 NNCLGDA-----GILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp SSSCCHH-----HHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred CCCCCHH-----HHHHHHHHhccCCcchhheeecccc
Confidence 8874310 001111112 234467777777663
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=191.76 Aligned_cols=101 Identities=27% Similarity=0.379 Sum_probs=75.8
Q ss_pred CceeEEEecCCCccccC-cccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccch-hhhccCcceEEe
Q 005896 134 KMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQ-EMRNLINLRHLD 210 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~ 210 (671)
+++++|+|++|.+..++ ..|..+++|++|+|++|.++.+ +..|.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 67788888888887665 6678888888888888888876 366788888888888887 6776665 477888888888
Q ss_pred ecCCccccccCc-cCCCCCCCCcccee
Q 005896 211 IRGAKLLKEMPF-GMKELNKLQTLSNF 236 (671)
Q Consensus 211 L~~~~~~~~~p~-~l~~l~~L~~L~~~ 236 (671)
+++|. +..+|. .+.++++|+.|++.
T Consensus 143 L~~N~-i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 143 LRNNP-IESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCCCc-ccccCHHHhhhCcccCEeCCC
Confidence 88887 555554 47777777777643
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=8.1e-20 Score=193.30 Aligned_cols=101 Identities=25% Similarity=0.299 Sum_probs=76.6
Q ss_pred CceeEEEecCCCcccc-CcccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccchh-hhccCcceEEe
Q 005896 134 KMLRMLSLQGYRIGEL-PIPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLD 210 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 210 (671)
+++++|+|++|.+..+ |..|..+++|++|+|++|.|+.+ |..+.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 5788888888888766 46678888888888888888876 467888888888888888 67766654 67788888888
Q ss_pred ecCCccccccCc-cCCCCCCCCcccee
Q 005896 211 IRGAKLLKEMPF-GMKELNKLQTLSNF 236 (671)
Q Consensus 211 L~~~~~~~~~p~-~l~~l~~L~~L~~~ 236 (671)
+++|. +..+|. .+.++++|+.|++.
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCCCC-cceeCHhHHhcCCcccEEeCC
Confidence 88888 555554 37777777777643
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=4.1e-22 Score=219.41 Aligned_cols=241 Identities=15% Similarity=0.088 Sum_probs=123.2
Q ss_pred hhhcccCCccEEecccccccC------CCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-CcccC-CCCccceeecC
Q 005896 94 EVFNEIGHLRTFLPLRLRIRG------GSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PIPFE-DLRLLRFLNLA 165 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~-~l~~L~~L~L~ 165 (671)
..+..+++|++|.+.+...-. ..+... ........+..+++|+.|+|++|.++.. +..+. .+++|++|+|+
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGY-VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCB-CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccch-hhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 445567788888877611000 000000 0112233445677777777777766432 23332 46777777777
Q ss_pred CC-cccc--cchhhhccccCcEEecCCCccccc-----cchhhhccCcceEEeecCCccccccC-----ccCCCCCCCCc
Q 005896 166 DT-DIRS--LPESKCKLLNLEILILRNCSRLIK-----LPQEMRNLINLRHLDIRGAKLLKEMP-----FGMKELNKLQT 232 (671)
Q Consensus 166 ~n-~i~~--lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~~~~~p-----~~l~~l~~L~~ 232 (671)
+| .++. ++..+..+++|++|++++| .+.. ++.....+++|++|++++|. +.++ .-+.++++|+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~ 215 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKS 215 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcE
Confidence 77 4553 4455557777777777777 3332 22222355677777777764 1111 11233456666
Q ss_pred cceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccC
Q 005896 233 LSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTL 312 (671)
Q Consensus 233 L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 312 (671)
|++..+ ..... .+..+..+++|+.|.+..+... .. ...-......+
T Consensus 216 L~L~~~------------------------------~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~-~~~~~~l~~~l 261 (594)
T 2p1m_B 216 LKLNRA------------------------------VPLEK-LATLLQRAPQLEELGTGGYTAE--VR-PDVYSGLSVAL 261 (594)
T ss_dssp EECCTT------------------------------SCHHH-HHHHHHHCTTCSEEECSBCCCC--CC-HHHHHHHHHHH
T ss_pred EecCCC------------------------------CcHHH-HHHHHhcCCcceEcccccccCc--cc-hhhHHHHHHHH
Confidence 653221 01111 2344556677777776544320 01 11111222344
Q ss_pred CCCCCCcEE-EEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCC-CC-CCCCCCCccEEEEeCC
Q 005896 313 QPHERIKEL-AIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAA-LP-SLGLMSSLKILAVKGL 374 (671)
Q Consensus 313 ~~~~~L~~L-~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~-~~-~l~~l~~L~~L~L~~~ 374 (671)
..+++|+.+ .+.......++..+. .+++|++|++++|.+.+. +. .+..+++|++|++++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 556677776 333333333443333 367777777777774322 11 2456777777777776
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=2e-20 Score=185.07 Aligned_cols=201 Identities=21% Similarity=0.199 Sum_probs=92.3
Q ss_pred CceeEEEecCCCccccC-cccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCcccccc-chhhhccCcceEEe
Q 005896 134 KMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLD 210 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~ 210 (671)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+ |..++.+++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 34555555555554444 2345555555555555555544 444555555555555555224433 33345555555555
Q ss_pred ecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEE
Q 005896 211 IRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTL 290 (671)
Q Consensus 211 L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 290 (671)
+++|.+.+..|..+.++++|++|++..+.....+. ..+..+++|+.|++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-------------------------------DTFRDLGNLTHLFL 160 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------------TTTTTCTTCCEEEC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-------------------------------hHhccCCCccEEEC
Confidence 55555222223334444444444433222111100 11333344444444
Q ss_pred EEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccC-CCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccE
Q 005896 291 EWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARF-PPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKI 368 (671)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~ 368 (671)
++|.+...+. ..+..+++|+.|+++++....+ |.++. .+++|+.|++++|.+.+..+ .+..+++|++
T Consensus 161 ~~n~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 161 HGNRISSVPE---------RAFRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp CSSCCCEECT---------TTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred CCCcccccCH---------HHhcCccccCEEECCCCcccccCHhHcc--CcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 4443311100 1122334444555555444433 34444 36666666666666555443 3566666666
Q ss_pred EEEeCCCC
Q 005896 369 LAVKGLKK 376 (671)
Q Consensus 369 L~L~~~~~ 376 (671)
|++++|+.
T Consensus 230 L~l~~N~~ 237 (285)
T 1ozn_A 230 LRLNDNPW 237 (285)
T ss_dssp EECCSSCE
T ss_pred EeccCCCc
Confidence 66666643
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=2.8e-21 Score=194.17 Aligned_cols=246 Identities=15% Similarity=0.104 Sum_probs=187.5
Q ss_pred hhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccch
Q 005896 95 VFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPE 174 (671)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~ 174 (671)
.+..+++|+.|.+.+ |.+ ..+++..|..+++|++|+|++|.+..++. +..+++|++|++++|.++.+|.
T Consensus 29 ~~~~~~~L~~L~L~~---------n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~ 97 (317)
T 3o53_A 29 LRQSAWNVKELDLSG---------NPL-SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV 97 (317)
T ss_dssp HHTTGGGCSEEECTT---------SCC-CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE
T ss_pred HhccCCCCCEEECcC---------Ccc-CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC
Confidence 345677999999998 444 44566788999999999999999976654 8899999999999999988763
Q ss_pred hhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhH
Q 005896 175 SKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLN 254 (671)
Q Consensus 175 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~ 254 (671)
.++|++|++++| .+..++. ..+++|++|++++|.+.+..|..++.+++|+.|++..+......
T Consensus 98 ----~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------- 160 (317)
T 3o53_A 98 ----GPSIETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN---------- 160 (317)
T ss_dssp ----CTTCCEEECCSS-CCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE----------
T ss_pred ----CCCcCEEECCCC-ccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc----------
Confidence 489999999998 7776664 34788999999999944444456888999999987655433211
Q ss_pred hcCCccEEecccCCCChhhhhhhcc-CCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCC
Q 005896 255 LLCDELCIAGLENVNSPQNAREAAL-REKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPP 333 (671)
Q Consensus 255 ~L~~~l~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 333 (671)
+..+ ..+++|+.|++++|.+... .....+++|+.|++++|.+..+|.
T Consensus 161 ---------------------~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 161 ---------------------FAELAASSDTLEHLNLQYNFIYDV-----------KGQVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp ---------------------GGGGGGGTTTCCEEECTTSCCCEE-----------ECCCCCTTCCEEECCSSCCCEECG
T ss_pred ---------------------HHHHhhccCcCCEEECCCCcCccc-----------ccccccccCCEEECCCCcCCcchh
Confidence 1122 3567899999998887322 333457899999999999988988
Q ss_pred CCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCc-eeccccccCCCccCCCCCcceeeccCccccc
Q 005896 334 WIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKKL-KSIESEVYGEGFSMPFPSLEILSFESLPEWQ 408 (671)
Q Consensus 334 ~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 408 (671)
.+. .+++|++|++++|.+....+.+..+++|+.|++++|+.. ..++..+.. +++|+.+++.++..+.
T Consensus 209 ~~~--~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~------~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 209 EFQ--SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK------NQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGG--GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT------CHHHHHHHHHHHHHHH
T ss_pred hhc--ccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc------cccceEEECCCchhcc
Confidence 776 589999999999998765447899999999999999876 333333333 8888888887655443
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2.6e-19 Score=177.09 Aligned_cols=196 Identities=19% Similarity=0.191 Sum_probs=141.0
Q ss_pred eEEEecCCCccccCcccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCcccccc-chhhhccCcceEEeecCC
Q 005896 137 RMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRGA 214 (671)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~ 214 (671)
++++.+++.+..+|..+ .++|++|++++|.++.+| ..++.+++|++|++++| .+..+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 78899999999998765 479999999999999885 57999999999999999 66655 777999999999999999
Q ss_pred cccccc-CccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEe
Q 005896 215 KLLKEM-PFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWG 293 (671)
Q Consensus 215 ~~~~~~-p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 293 (671)
..++.+ |..+..+++|++|++..+...... +..+.++++|+.|++++|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------------~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELG-------------------------------PGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-------------------------------TTTTTTCTTCCEEECCSS
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEEC-------------------------------HhHhhCCcCCCEEECCCC
Confidence 755666 566889999999986554432211 133566778888888777
Q ss_pred cCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEe
Q 005896 294 SQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVK 372 (671)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~ 372 (671)
.+..... ..+..+++|+.|+++++.+..+|..... .+++|++|++++|.+.+..| .++.+++|++|+++
T Consensus 140 ~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 140 ALQALPD---------DTFRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp CCCCCCT---------TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred cccccCH---------hHhccCCCccEEECCCCcccccCHHHhc-CccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 7633221 2244456677777777666666553221 46667777777766655544 56666677777776
Q ss_pred CCCC
Q 005896 373 GLKK 376 (671)
Q Consensus 373 ~~~~ 376 (671)
+|..
T Consensus 210 ~n~l 213 (285)
T 1ozn_A 210 ANNL 213 (285)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 6643
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=4.4e-20 Score=184.96 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=40.2
Q ss_pred CCCceeEEEecCCCcc-ccCccc--CCCCccceeecCCCcccccchhhhcc-----ccCcEEecCCCccccccc-hhhhc
Q 005896 132 MFKMLRMLSLQGYRIG-ELPIPF--EDLRLLRFLNLADTDIRSLPESKCKL-----LNLEILILRNCSRLIKLP-QEMRN 202 (671)
Q Consensus 132 ~l~~L~~L~L~~~~l~-~lp~~~--~~l~~L~~L~L~~n~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp-~~i~~ 202 (671)
.+++|++|++++|.+. .+|..+ ..+++|++|+|++|.++.+|..++.+ ++|++|++++| .+..+| ..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence 3455555555555543 344433 44555555555555555444444444 45555555555 333333 34455
Q ss_pred cCcceEEeecCCc
Q 005896 203 LINLRHLDIRGAK 215 (671)
Q Consensus 203 l~~L~~L~L~~~~ 215 (671)
+++|++|++++|.
T Consensus 172 l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 172 FPALSTLDLSDNP 184 (312)
T ss_dssp CSSCCEEECCSCT
T ss_pred CCCCCEEECCCCC
Confidence 5555555555554
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=4e-18 Score=163.72 Aligned_cols=214 Identities=16% Similarity=0.167 Sum_probs=131.9
Q ss_pred CccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCccc
Q 005896 328 GARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPE 406 (671)
Q Consensus 328 ~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 406 (671)
...+|. + .++|++|++++|.+.+..+ .++.+++|++|++++|..++.++....
T Consensus 23 l~~ip~-~----~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f--------------------- 76 (239)
T 2xwt_C 23 IQRIPS-L----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF--------------------- 76 (239)
T ss_dssp CSSCCC-C----CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE---------------------
T ss_pred ccccCC-C----CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc---------------------
Confidence 455665 3 3477788888877766555 577777777777777753444332111
Q ss_pred ccccccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCC
Q 005896 407 WQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGC 486 (671)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~ 486 (671)
.+ +++|++|++++|++++ .+|. ..+..+++|++|++++|.
T Consensus 77 --------~~------l~~L~~L~l~~~n~l~-~i~~-----------------~~f~~l~~L~~L~l~~n~-------- 116 (239)
T 2xwt_C 77 --------YN------LSKVTHIEIRNTRNLT-YIDP-----------------DALKELPLLKFLGIFNTG-------- 116 (239)
T ss_dssp --------ES------CTTCCEEEEEEETTCC-EECT-----------------TSEECCTTCCEEEEEEEC--------
T ss_pred --------CC------CcCCcEEECCCCCCee-EcCH-----------------HHhCCCCCCCEEeCCCCC--------
Confidence 11 6677777777655665 2321 122223334444444433
Q ss_pred CCCccCcccCCCCCCCCeeEeecCCCCcccCCCCCCCCcceEEEccCcCcccccccccCCCCCcC-eEEecccCCCcccC
Q 005896 487 DKLEALPNDMHKLNSLRDLGIQLCPNLVSFPEEGFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLK-HLWIAVSDDEAECF 565 (671)
Q Consensus 487 ~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~-~L~l~~~c~~~~~i 565 (671)
+..+|. +..+++|+ .|++|++++|..++.+++..+.++++|+ .|++++ +.++.+
T Consensus 117 --l~~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~--n~l~~i 171 (239)
T 2xwt_C 117 --LKMFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN--NGFTSV 171 (239)
T ss_dssp --CCSCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS--CCCCEE
T ss_pred --Cccccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCC--CCCccc
Confidence 223332 33333333 0115555554445555555677788888 888887 667777
Q ss_pred CcccccccCCCCcCeEeccCCCCCccCCccCCCCC-CccCeEeecCCCCCCcCCCCCCCCCccEEEEeCChhh
Q 005896 566 PDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNL-TSLQYLRIGNCPNLTSFPEVGLPSSLLELHIYGCPNL 637 (671)
Q Consensus 566 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l 637 (671)
|...+ .. ++|++|++++|..++.++...+..+ ++|++|++++| .++.+|.. .+++|+.|++.+++.|
T Consensus 172 ~~~~~--~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 172 QGYAF--NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CTTTT--TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred CHhhc--CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 76333 22 6889999998546888876778888 99999999998 78888875 6789999999888754
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=5.2e-20 Score=195.75 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=50.8
Q ss_pred hhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccC
Q 005896 125 VLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLI 204 (671)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 204 (671)
+++..|..+++|++|+|++|.+...+. +..+++|++|+|++|.++.+|. .++|++|++++| .+..+|. ..++
T Consensus 49 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N-~l~~~~~--~~l~ 120 (487)
T 3oja_A 49 ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVSC--SRGQ 120 (487)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSS-CCCCEEE--CCCS
T ss_pred CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCC-cCCCCCc--cccC
Confidence 334445555555555555555543332 5555555555555555554432 145555555555 4444333 2345
Q ss_pred cceEEeecCCccccccCccCCCCCCCCccce
Q 005896 205 NLRHLDIRGAKLLKEMPFGMKELNKLQTLSN 235 (671)
Q Consensus 205 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~ 235 (671)
+|++|++++|.+.+..|..++.+++|+.|++
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 5555555555533333334444555555543
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1.5e-20 Score=188.39 Aligned_cols=129 Identities=20% Similarity=0.185 Sum_probs=87.3
Q ss_pred hhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccc--cCcccC-------CCCccceeecC
Q 005896 95 VFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGE--LPIPFE-------DLRLLRFLNLA 165 (671)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~~~-------~l~~L~~L~L~ 165 (671)
.+...++|+.|.+.+ +.+ .++...... |++|+|++|.+.. +|..+. .+++|++|+|+
T Consensus 38 ~~~~~~~L~~l~l~~---------n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 103 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRV---------DTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103 (312)
T ss_dssp EEEEEEECTTHHHHC---------CTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEE
T ss_pred EEccCCCceeEeecc---------ccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEcc
Confidence 345566677777766 333 334333322 7777888887743 454444 67888888888
Q ss_pred CCccc-ccchhh--hccccCcEEecCCCccccccchhhhcc-----CcceEEeecCCccccccCccCCCCCCCCccceeE
Q 005896 166 DTDIR-SLPESK--CKLLNLEILILRNCSRLIKLPQEMRNL-----INLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFI 237 (671)
Q Consensus 166 ~n~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~ 237 (671)
+|.++ .+|..+ +.+++|++|++++| .+..+|..++.+ ++|++|++++|.+.+..|..++++++|++|++..
T Consensus 104 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 104 NLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp EEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS
T ss_pred CCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCC
Confidence 88887 567765 78888888888888 666667777766 7888888888884333335677788888777654
Q ss_pred e
Q 005896 238 V 238 (671)
Q Consensus 238 ~ 238 (671)
+
T Consensus 183 N 183 (312)
T 1wwl_A 183 N 183 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=2.1e-18 Score=170.24 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=104.9
Q ss_pred hcCCCceeEEEecCCCccccCcccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccchhhhccCcceE
Q 005896 130 LPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRH 208 (671)
Q Consensus 130 ~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 208 (671)
+..+++++.++++++.++.+|..+. +++++|+|++|.++.+ |..+..+++|++|++++| .+..+|. .+.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC-CCCCCcCCE
Confidence 3445555566666555555555443 4555666666665544 345555666666666655 4555544 255556666
Q ss_pred EeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCce
Q 005896 209 LDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEAL 288 (671)
Q Consensus 209 L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 288 (671)
|++++|. +..+|..+..+++|+.|++..+.....+. ..+.++++|+.|
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~-------------------------------~~~~~l~~L~~L 129 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPL-------------------------------GALRGLGELQEL 129 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCS-------------------------------STTTTCTTCCEE
T ss_pred EECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCH-------------------------------HHHcCCCCCCEE
Confidence 6666655 44555555555555555543332221110 123344455555
Q ss_pred EEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccE
Q 005896 289 TLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKI 368 (671)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~ 368 (671)
++++|.+...++ ..+..+++|+.|++++|.+..+|...+. .+++|++|++++|.+....+.+..+++|+.
T Consensus 130 ~L~~N~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 130 YLKGNELKTLPP---------GLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPF 199 (290)
T ss_dssp ECTTSCCCCCCT---------TTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSE
T ss_pred ECCCCCCCccCh---------hhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhcccccCCe
Confidence 555544422111 1123345555666666665556554433 466677777776666544335555666666
Q ss_pred EEEeCCC
Q 005896 369 LAVKGLK 375 (671)
Q Consensus 369 L~L~~~~ 375 (671)
|++++|+
T Consensus 200 l~L~~Np 206 (290)
T 1p9a_G 200 AFLHGNP 206 (290)
T ss_dssp EECCSCC
T ss_pred EEeCCCC
Confidence 6666664
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=5.5e-21 Score=210.44 Aligned_cols=390 Identities=17% Similarity=0.116 Sum_probs=201.7
Q ss_pred cccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCC-Cccc--cCcccCCCCccceeecCCCcccc--
Q 005896 97 NEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGY-RIGE--LPIPFEDLRLLRFLNLADTDIRS-- 171 (671)
Q Consensus 97 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~--lp~~~~~l~~L~~L~L~~n~i~~-- 171 (671)
..+++|+.|.+.+ +.+....+......+++|++|+|++| .++. ++..+..+++|++|+|++|.++.
T Consensus 102 ~~~~~L~~L~L~~---------~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 102 SSYTWLEEIRLKR---------MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp HHCTTCCEEEEES---------CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred HhCCCCCeEEeeC---------cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence 4688999999988 44444444444446889999999988 4544 44444578899999999998764
Q ss_pred ---cchhhhccccCcEEecCCCc-cc--cccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCc---
Q 005896 172 ---LPESKCKLLNLEILILRNCS-RL--IKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGE--- 242 (671)
Q Consensus 172 ---lp~~i~~L~~L~~L~L~~~~-~l--~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~--- 242 (671)
++.....+++|++|++++|. .+ ..++..+..+++|++|++++|...+.+|..+.++++|+.|++..+....
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchh
Confidence 22333467799999999884 11 1222323567999999999985566677778888888888754322100
Q ss_pred ----ccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCC
Q 005896 243 ----CASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERI 318 (671)
Q Consensus 243 ----~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L 318 (671)
....+..+++|+.+. .+.. ......+..+..+++|+.|++++|.+. .......+.
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls------~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~l~--------~~~l~~~~~----- 311 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLS------GFWD--AVPAYLPAVYSVCSRLTTLNLSYATVQ--------SYDLVKLLC----- 311 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEE------CCBT--CCGGGGGGGHHHHTTCCEEECTTCCCC--------HHHHHHHHT-----
T ss_pred hHHHHHHHHhcCCCccccc------CCcc--cchhhHHHHHHhhCCCCEEEccCCCCC--------HHHHHHHHh-----
Confidence 000011122221110 0000 011112222223445555555444431 011111122
Q ss_pred cEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCC-CCCCCCccEEEEeCC--------CCceeccccccCCCc
Q 005896 319 KELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPS-LGLMSSLKILAVKGL--------KKLKSIESEVYGEGF 389 (671)
Q Consensus 319 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~L~~~--------~~~~~~~~~~~~~~~ 389 (671)
.+++|++|++++|.....++. ...+++|++|++.+| ..+...... ..
T Consensus 312 --------------------~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~----~l 367 (594)
T 2p1m_B 312 --------------------QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV----SV 367 (594)
T ss_dssp --------------------TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH----HH
T ss_pred --------------------cCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH----HH
Confidence 245555555555411011111 123455555555332 111111000 00
Q ss_pred cCCCCCcceeeccCccccccc-ccccCCCCccCCCCccceeeEe-----cCCCCccCCC---------CCCCCccEEEEe
Q 005896 390 SMPFPSLEILSFESLPEWQHW-NTNIKGNEPVEIFPRLQELSIA-----ECPQLSGELP---------GLLPSLETLVVR 454 (671)
Q Consensus 390 ~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~~lp---------~~l~~L~~L~l~ 454 (671)
...+++|+.|.+.... +... ...+... +++|++|++. +|+.++ ..| ..+++|+.|+++
T Consensus 368 ~~~~~~L~~L~~~~~~-l~~~~~~~l~~~-----~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQ-MTNAALITIARN-----RPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHCTTCCEEEEEESC-CCHHHHHHHHHH-----CTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHhchhHHHHHHhcCC-cCHHHHHHHHhh-----CCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeec
Confidence 0115666666443222 2111 1111111 6777777777 456665 222 245777888775
Q ss_pred ccCCcCc---cCC-CCCCcceEEeccCCCcccccCCCCCccCcccCCCCCCCCeeEeecCCCCcccCC---CCCCCCcce
Q 005896 455 KCGKLVV---PLS-SYPMLCRLEVDECKELVDICGCDKLEALPNDMHKLNSLRDLGIQLCPNLVSFPE---EGFPTNLTT 527 (671)
Q Consensus 455 ~~~~l~~---~~~-~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~ 527 (671)
+ ..... .+. .+++|+.|++++|.... ..++.....+++|+.|++++|+. +.... ...+++|+.
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~--------~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD--------LGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRS 510 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSH--------HHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSE
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcH--------HHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCE
Confidence 5 11111 111 26778888888877321 11111114578888888888854 32211 123578888
Q ss_pred EEEccCcCcccccccccCCCCCcCeEEecc
Q 005896 528 LVIGNFKLYKTLVQWGLHRLTSLKHLWIAV 557 (671)
Q Consensus 528 L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 557 (671)
|++++|+............+++|+...+..
T Consensus 511 L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 511 LWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp EEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred EeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 999888763322222124567776655554
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=7.5e-20 Score=194.48 Aligned_cols=241 Identities=13% Similarity=0.073 Sum_probs=175.8
Q ss_pred hcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceE
Q 005896 130 LPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRH 208 (671)
Q Consensus 130 ~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 208 (671)
...+++|++|+|++|.+..++ ..|..+++|++|+|++|.++.+++ ++.+++|++|+|++| .+..+|. .++|++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIET 103 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCE
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCE
Confidence 345569999999999998775 679999999999999999997755 999999999999999 7877764 389999
Q ss_pred EeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCce
Q 005896 209 LDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEAL 288 (671)
Q Consensus 209 L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L 288 (671)
|++++|. +..+|.. .+++|+.|++..+..... .+..++.+++|+.|
T Consensus 104 L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~-------------------------------~~~~~~~l~~L~~L 149 (487)
T 3oja_A 104 LHAANNN-ISRVSCS--RGQGKKNIYLANNKITML-------------------------------RDLDEGCRSRVQYL 149 (487)
T ss_dssp EECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSG-------------------------------GGBCGGGGSSEEEE
T ss_pred EECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCC-------------------------------CchhhcCCCCCCEE
Confidence 9999999 5555443 457788887665543322 12345667788888
Q ss_pred EEEEecCCCCCCchhhHHHHhccCC-CCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcc
Q 005896 289 TLEWGSQSDSPRDAVLEEKVLDTLQ-PHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLK 367 (671)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~ 367 (671)
++++|.+.+..+ ..+. .+++|+.|++++|.+..+|... .+++|+.|++++|.+.+.+|.++.+++|+
T Consensus 150 ~Ls~N~l~~~~~---------~~l~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 217 (487)
T 3oja_A 150 DLKLNEIDTVNF---------AELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217 (487)
T ss_dssp ECTTSCCCEEEG---------GGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred ECCCCCCCCcCh---------HHHhhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCcc
Confidence 888888743222 1222 4578888888888887776655 37889999999998877666788888999
Q ss_pred EEEEeCCCCceeccccccCCCccCCCCCcceeeccCccccccc-ccccCCCCccCCCCccceeeEecCC
Q 005896 368 ILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHW-NTNIKGNEPVEIFPRLQELSIAECP 435 (671)
Q Consensus 368 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~ 435 (671)
.|++++|... .+|..+.. +++|+.|++++++..... ...+.. ++.|+.+++..+.
T Consensus 218 ~L~Ls~N~l~-~lp~~l~~------l~~L~~L~l~~N~l~c~~~~~~~~~------l~~L~~l~~~~~~ 273 (487)
T 3oja_A 218 WISLRNNKLV-LIEKALRF------SQNLEHFDLRGNGFHCGTLRDFFSK------NQRVQTVAKQTVK 273 (487)
T ss_dssp EEECTTSCCC-EECTTCCC------CTTCCEEECTTCCBCHHHHHHHHTT------CHHHHHHHHHHHH
T ss_pred EEEecCCcCc-ccchhhcc------CCCCCEEEcCCCCCcCcchHHHHHh------CCCCcEEeccccc
Confidence 9999888644 45544433 788888888877644111 111222 6777777775433
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=3.5e-18 Score=168.07 Aligned_cols=188 Identities=18% Similarity=0.151 Sum_probs=105.8
Q ss_pred hhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCccccccch-hhh
Q 005896 125 VLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKLPQ-EMR 201 (671)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~ 201 (671)
+++..|..+++|++|++++|.+..++ ..|..+++|++|+|++|.++.++ ..++++++|++|++++| .+..++. .++
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 121 (276)
T 2z62_A 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIG 121 (276)
T ss_dssp ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCT
T ss_pred cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-CccccCchhcc
Confidence 33344555566666666666555544 24555566666666666655443 44555666666666655 4444433 355
Q ss_pred ccCcceEEeecCCcccc-ccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccC
Q 005896 202 NLINLRHLDIRGAKLLK-EMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALR 280 (671)
Q Consensus 202 ~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~ 280 (671)
.+++|++|++++|.+.. .+|..++++++|++|++
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L--------------------------------------------- 156 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL--------------------------------------------- 156 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC---------------------------------------------
T ss_pred cCCCCCEEECcCCccceecCchhhccCCCCCEEEC---------------------------------------------
Confidence 55666666666555222 13444555555555544
Q ss_pred CCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCc-EEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-
Q 005896 281 EKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIK-ELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP- 358 (671)
Q Consensus 281 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~- 358 (671)
++|.+....... +..+..++.+. .|+++++....++.... ...+|++|++++|.+.+..+
T Consensus 157 ----------s~N~l~~~~~~~------~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 157 ----------SSNKIQSIYCTD------LRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp ----------CSSCCCEECGGG------GHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTT
T ss_pred ----------CCCCCCcCCHHH------hhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCceeecCHh
Confidence 444332211110 11111112222 56677777666766665 35589999999999776655
Q ss_pred CCCCCCCccEEEEeCCCC
Q 005896 359 SLGLMSSLKILAVKGLKK 376 (671)
Q Consensus 359 ~l~~l~~L~~L~L~~~~~ 376 (671)
.++.+++|++|++++|+.
T Consensus 219 ~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TTTTCCSCCEEECCSSCB
T ss_pred HhcccccccEEEccCCcc
Confidence 468899999999998864
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=8.5e-19 Score=174.95 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=37.9
Q ss_pred CCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCC
Q 005896 312 LQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLK 375 (671)
Q Consensus 312 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 375 (671)
+..+++|+.|+++++....++. +. .+++|++|++++|.+.+.. .+..+++|+.|++++|+
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 3344556666666665555554 22 4677777777777765433 46777777777777774
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=5.2e-18 Score=166.09 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=34.6
Q ss_pred CCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCC
Q 005896 314 PHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLK 375 (671)
Q Consensus 314 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~ 375 (671)
.+++|+.|+++++.+..+|..... .+++|++|++++|.+....+ .+..+++|+.|++++|+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 334555555555555555543222 46667777777666655444 45666667777776664
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=5.2e-17 Score=165.34 Aligned_cols=238 Identities=15% Similarity=0.130 Sum_probs=157.3
Q ss_pred EEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcce
Q 005896 320 ELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEI 398 (671)
Q Consensus 320 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~ 398 (671)
.++.+++..+++|..+ .+++++|+|++|.+....+ .++++++|++|+|++|...+.++...+.. ++++..
T Consensus 13 ~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~-----L~~l~~ 83 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN-----LPKLHE 83 (350)
T ss_dssp EEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS-----CTTCCE
T ss_pred EEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc-----chhhhh
Confidence 4556666677788755 3578888888888766555 57888888888888887666655432221 444444
Q ss_pred eeccCccccccc-ccccCCCCccCCCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccC
Q 005896 399 LSFESLPEWQHW-NTNIKGNEPVEIFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDEC 477 (671)
Q Consensus 399 L~l~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~ 477 (671)
+.+.+...+..+ ...+.+ +++|++|++++ ++++ .+|. ..+....++..|++.++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~------l~~L~~L~l~~-n~l~-~~~~-----------------~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQN------LPNLQYLLISN-TGIK-HLPD-----------------VHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp EEEEEETTCCEECTTSBCC------CTTCCEEEEEE-ECCS-SCCC-----------------CTTCCBSSCEEEEEESC
T ss_pred hhcccCCcccccCchhhhh------ccccccccccc-cccc-cCCc-----------------hhhcccchhhhhhhccc
Confidence 333332223322 122222 55555555555 3444 2221 11222334555555554
Q ss_pred CCcccccCCCCCccCccc-CCCC-CCCCeeEeecCCCCcccCCCC-CCCCcceEEEccCcCcccccccccCCCCCcCeEE
Q 005896 478 KELVDICGCDKLEALPND-MHKL-NSLRDLGIQLCPNLVSFPEEG-FPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLW 554 (671)
Q Consensus 478 ~~~~~i~~~~~l~~l~~~-~~~l-~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~ 554 (671)
..+ ..+|.. +..+ ..++.|++++| .++.++... ...+|+.+++++++.++.++...|.++++|+.|+
T Consensus 139 ~~i---------~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 139 INI---------HTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp TTC---------CEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred ccc---------ccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 432 444432 3333 46788888888 667776653 3467888888888888888888889999999999
Q ss_pred ecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecC
Q 005896 555 IAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGN 610 (671)
Q Consensus 555 l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 610 (671)
+++ +.++.+|. ..+.+|+.|.+.++++++.+| .+..+++|+.+++.+
T Consensus 209 Ls~--N~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 209 ISR--TRIHSLPS-----YGLENLKKLRARSTYNLKKLP--TLEKLVALMEASLTY 255 (350)
T ss_dssp CTT--SCCCCCCS-----SSCTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSC
T ss_pred cCC--CCcCccCh-----hhhccchHhhhccCCCcCcCC--CchhCcChhhCcCCC
Confidence 998 78889887 467889999988889999998 688899999999865
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1e-17 Score=164.17 Aligned_cols=100 Identities=24% Similarity=0.385 Sum_probs=55.0
Q ss_pred cCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchh-hhccCcceEE
Q 005896 131 PMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHL 209 (671)
Q Consensus 131 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L 209 (671)
..+++|+.|+++++.+..++ .+..+++|++|++++|.++.++ .++.+++|++|++++| .+..+|.. ++.+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 34556666666666655543 3555666666666666666553 4556666666666666 44444433 4566666666
Q ss_pred eecCCccccccCcc-CCCCCCCCccc
Q 005896 210 DIRGAKLLKEMPFG-MKELNKLQTLS 234 (671)
Q Consensus 210 ~L~~~~~~~~~p~~-l~~l~~L~~L~ 234 (671)
++++|. +..+|.. ++.+++|++|+
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred ECCCCc-CCccCHHHhccCCCCCEEE
Confidence 666665 3333332 34444444443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=1.3e-17 Score=164.51 Aligned_cols=197 Identities=23% Similarity=0.230 Sum_probs=148.0
Q ss_pred CCccceeeEecCCCCccCCCCC-CCCccEEEEeccCCc---CccCCCCCCcceEEeccCCCcccccCCCCCccCcccCCC
Q 005896 423 FPRLQELSIAECPQLSGELPGL-LPSLETLVVRKCGKL---VVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMHK 498 (671)
Q Consensus 423 ~~~L~~L~l~~c~~l~~~lp~~-l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~~ 498 (671)
+++++++++++ +.++ .+|.. .++++.|++++|... ...+..+++|++|++++|. ++.++.. ..
T Consensus 9 l~~l~~l~~~~-~~l~-~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~----------l~~~~~~-~~ 75 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----------LTKLQVD-GT 75 (290)
T ss_dssp STTCCEEECTT-SCCS-SCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC----------CCEEECC-SC
T ss_pred cCCccEEECCC-CCCC-cCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc----------cCcccCC-CC
Confidence 66777777776 5666 56643 356778888777643 3456778888889888887 4555543 67
Q ss_pred CCCCCeeEeecCCCCcccCCC-CCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCC
Q 005896 499 LNSLRDLGIQLCPNLVSFPEE-GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTS 577 (671)
Q Consensus 499 l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~ 577 (671)
+++|++|++++| .++.+|.. ..+++|++|++++| .++.+++..+.++++|++|++++ +.++.++...+ ..+++
T Consensus 76 l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~--~~l~~ 149 (290)
T 1p9a_G 76 LPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG--NELKTLPPGLL--TPTPK 149 (290)
T ss_dssp CTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT--SCCCCCCTTTT--TTCTT
T ss_pred CCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC--CCCCccChhhc--ccccC
Confidence 888999999988 56667654 56788999999665 46667666788899999999998 67888877333 56789
Q ss_pred cCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCC-CCCCccEEEEeCChhhHHHH
Q 005896 578 LTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVG-LPSSLLELHIYGCPNLKKAC 641 (671)
Q Consensus 578 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~c~~l~~~~ 641 (671)
|++|++++ ++++.+|...+..+++|++|++++| .++.+|... ..++|+.|++.++| +.+.|
T Consensus 150 L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np-~~C~c 211 (290)
T 1p9a_G 150 LEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP-WLCNC 211 (290)
T ss_dssp CCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC-BCCSG
T ss_pred CCEEECCC-CcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC-ccCcC
Confidence 99999998 6789998666788999999999999 788888732 35789999998776 44444
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.3e-17 Score=166.27 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=140.4
Q ss_pred hcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchh
Q 005896 96 FNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPES 175 (671)
Q Consensus 96 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~ 175 (671)
..++++|++|.+.+ +.+ ..++ .+..+++|++|++++|.+..++. +..+++|++|+|++|.++.+| .
T Consensus 37 ~~~l~~L~~L~l~~---------~~i-~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~ 102 (308)
T 1h6u_A 37 QADLDGITTLSAFG---------TGV-TTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-A 102 (308)
T ss_dssp HHHHHTCCEEECTT---------SCC-CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-G
T ss_pred HHHcCCcCEEEeeC---------CCc-cCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-h
Confidence 44677888888877 322 2222 46778888888888888877766 778888888888888888775 5
Q ss_pred hhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHh
Q 005896 176 KCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNL 255 (671)
Q Consensus 176 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 255 (671)
++.+++|++|++++| .+..+|. +..+++|++|++++|. +..++. ++.+++|+.|++..+......
T Consensus 103 ~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~----------- 167 (308)
T 1h6u_A 103 IAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLT----------- 167 (308)
T ss_dssp GTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-----------
T ss_pred hcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCCh-----------
Confidence 778888888888888 6777775 7888888888888887 555554 777778888776544322111
Q ss_pred cCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCC
Q 005896 256 LCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWI 335 (671)
Q Consensus 256 L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 335 (671)
.+..+++|+.|++++|.+.+.. .+..+++|+.|++++|....++. +
T Consensus 168 ----------------------~l~~l~~L~~L~l~~n~l~~~~-----------~l~~l~~L~~L~L~~N~l~~~~~-l 213 (308)
T 1h6u_A 168 ----------------------PLANLSKLTTLKADDNKISDIS-----------PLASLPNLIEVHLKNNQISDVSP-L 213 (308)
T ss_dssp ----------------------GGTTCTTCCEEECCSSCCCCCG-----------GGGGCTTCCEEECTTSCCCBCGG-G
T ss_pred ----------------------hhcCCCCCCEEECCCCccCcCh-----------hhcCCCCCCEEEccCCccCcccc-c
Confidence 1556678888888888774322 14556788899999888877775 4
Q ss_pred CCCCCCCccEEEEeCCCCCC
Q 005896 336 GQHSFSEMKVLKLENCDNCA 355 (671)
Q Consensus 336 ~~~~l~~L~~L~l~~~~~~~ 355 (671)
. .+++|+.|++++|.+..
T Consensus 214 ~--~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 214 A--NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp T--TCTTCCEEEEEEEEEEC
T ss_pred c--CCCCCCEEEccCCeeec
Confidence 4 58999999999998654
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=1.4e-17 Score=163.67 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=59.8
Q ss_pred CceeEEEecCCCccccCc-ccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCccccccc-hhhhccCcceEEe
Q 005896 134 KMLRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKLP-QEMRNLINLRHLD 210 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~ 210 (671)
+.|++|++++|.++.++. .|..+++|++|++++|.++.++ ..++.+++|++|++++| .+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 456777777777766653 5666777777777777776653 35666777777777776 454443 4466677777777
Q ss_pred ecCCccccccCc-cCCCCCCCCccc
Q 005896 211 IRGAKLLKEMPF-GMKELNKLQTLS 234 (671)
Q Consensus 211 L~~~~~~~~~p~-~l~~l~~L~~L~ 234 (671)
+++|. +..++. .++.+++|++|+
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEE
T ss_pred CCCCC-ccccCchhcccCCCCCEEE
Confidence 77666 333332 244444444443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=3e-17 Score=157.54 Aligned_cols=195 Identities=16% Similarity=0.165 Sum_probs=105.6
Q ss_pred ceeEEEecCCCccccCc-ccCCCCccceeecCCCc-ccccch-hhhccccCcEEecCC-Cccccccch-hhhccCcceEE
Q 005896 135 MLRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTD-IRSLPE-SKCKLLNLEILILRN-CSRLIKLPQ-EMRNLINLRHL 209 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~-i~~lp~-~i~~L~~L~~L~L~~-~~~l~~lp~-~i~~l~~L~~L 209 (671)
.|++|++++|.++.+|. .|..+++|++|++++|. ++.+|. .++++++|++|++++ | .+..+|. .+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEE
Confidence 56666666666666553 45666666666666665 666543 566666666666665 4 5555543 35566666666
Q ss_pred eecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceE
Q 005896 210 DIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALT 289 (671)
Q Consensus 210 ~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 289 (671)
++++|. +..+|. +..+++|+ .|+.|+
T Consensus 111 ~l~~n~-l~~lp~-~~~l~~L~----------------------------------------------------~L~~L~ 136 (239)
T 2xwt_C 111 GIFNTG-LKMFPD-LTKVYSTD----------------------------------------------------IFFILE 136 (239)
T ss_dssp EEEEEC-CCSCCC-CTTCCBCC----------------------------------------------------SEEEEE
T ss_pred eCCCCC-Cccccc-cccccccc----------------------------------------------------cccEEE
Confidence 666666 444543 44444333 111333
Q ss_pred EEEe-cCCCCCCchhhHHHHhccCCCCCCCc-EEEEeccCCccCCCCCCCCCCCCccEEEEeCCC-CCCCCC-CCCCC-C
Q 005896 290 LEWG-SQSDSPRDAVLEEKVLDTLQPHERIK-ELAIKHYGGARFPPWIGQHSFSEMKVLKLENCD-NCAALP-SLGLM-S 364 (671)
Q Consensus 290 l~~~-~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~-~~~~~~-~l~~l-~ 364 (671)
+++| .+...+ ...+..+++|+ .|+++++....+|...+. .++|++|++++|. +....+ .+..+ +
T Consensus 137 l~~N~~l~~i~---------~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 137 ITDNPYMTSIP---------VNAFQGLCNETLTLKLYNNGFTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp EESCTTCCEEC---------TTTTTTTBSSEEEEECCSCCCCEECTTTTT--TCEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred CCCCcchhhcC---------cccccchhcceeEEEcCCCCCcccCHhhcC--CCCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 3333 221100 01123334555 555555555556665553 3677777777774 544433 56677 7
Q ss_pred CccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCc
Q 005896 365 SLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESL 404 (671)
Q Consensus 365 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 404 (671)
+|+.|++++|.. +.++.. .|++|+.|.+.++
T Consensus 206 ~L~~L~l~~N~l-~~l~~~--------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 206 GPSLLDVSQTSV-TALPSK--------GLEHLKELIARNT 236 (239)
T ss_dssp CCSEEECTTCCC-CCCCCT--------TCTTCSEEECTTC
T ss_pred CCcEEECCCCcc-ccCChh--------HhccCceeeccCc
Confidence 777777777643 233221 1555555555543
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=1e-16 Score=156.84 Aligned_cols=197 Identities=18% Similarity=0.269 Sum_probs=138.8
Q ss_pred CceeEEEecCCCccccCcccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCccccccchh-hhccCcceEEee
Q 005896 134 KMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDI 211 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L 211 (671)
...+.++++++.++.+|..+. .+|++|+|++|.++.+| ..++++++|++|++++| .+..+|.. +..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 457899999999999998764 68999999999999886 47999999999999999 78888876 478999999999
Q ss_pred cCCccccccCcc-CCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEE
Q 005896 212 RGAKLLKEMPFG-MKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTL 290 (671)
Q Consensus 212 ~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 290 (671)
++|. +..+|.. +..+++|++|++..+.....+
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------------------------------- 125 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLP---------------------------------------------- 125 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCC----------------------------------------------
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCccCeeC----------------------------------------------
Confidence 9998 5566654 566777776665433221111
Q ss_pred EEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccEE
Q 005896 291 EWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKIL 369 (671)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L 369 (671)
...+..+++|+.|+++++.+..+|..... .+++|++|++++|.+....+ .+..+++|++|
T Consensus 126 ------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 126 ------------------PRVFDSLTKLTYLSLGYNELQSLPKGVFD-KLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp ------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ------------------HHHhCcCcCCCEEECCCCcCCccCHhHcc-CCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 01123334555555555555556654332 57889999999888776665 57888889999
Q ss_pred EEeCCCCceeccccccCCCccCCCCCcceeeccCcc
Q 005896 370 AVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLP 405 (671)
Q Consensus 370 ~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 405 (671)
++++|... .++..... .+++|+.|++++++
T Consensus 187 ~L~~N~l~-~~~~~~~~-----~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 187 KLDNNQLK-RVPEGAFD-----SLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCS-CCCTTTTT-----TCTTCCEEECCSSC
T ss_pred ECCCCcCC-cCCHHHhc-----cccCCCEEEecCCC
Confidence 98888543 33332211 15666666666544
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=160.36 Aligned_cols=230 Identities=15% Similarity=0.139 Sum_probs=149.7
Q ss_pred cccCCccEEecccccccCCCCCcccchhhhhh--hhcCCCceeEEEecCCCcc-ccCccc--CCCCccceeecCCCcccc
Q 005896 97 NEIGHLRTFLPLRLRIRGGSNTSYITRSVLSD--LLPMFKMLRMLSLQGYRIG-ELPIPF--EDLRLLRFLNLADTDIRS 171 (671)
Q Consensus 97 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~l~-~lp~~~--~~l~~L~~L~L~~n~i~~ 171 (671)
....+++.+.+.+ .......... .+..+++|+.|++++|.+. ..|..+ ..+++|++|+|++|.++.
T Consensus 61 ~~~~~l~~l~l~~---------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 131 (310)
T 4glp_A 61 VKALRVRRLTVGA---------AQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT 131 (310)
T ss_dssp GSSCCCCEEEECS---------CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS
T ss_pred hhhcceeEEEEeC---------CcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc
Confidence 3445677777777 2222221111 1234567999999999985 556676 899999999999999985
Q ss_pred c-c----hhhhccccCcEEecCCCccccccc-hhhhccCcceEEeecCCccccc--cC--ccCCCCCCCCccceeEecCC
Q 005896 172 L-P----ESKCKLLNLEILILRNCSRLIKLP-QEMRNLINLRHLDIRGAKLLKE--MP--FGMKELNKLQTLSNFIVGKG 241 (671)
Q Consensus 172 l-p----~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~~--~p--~~l~~l~~L~~L~~~~~~~~ 241 (671)
. | ..+..+++|++|++++| .+..+| ..++.+++|++|++++|.+.+. ++ ..++.+++|++|++..+...
T Consensus 132 ~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 132 GRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp TTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred hhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 3 3 34567999999999999 566554 5688999999999999985432 33 23478888999887665432
Q ss_pred cccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEE
Q 005896 242 ECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKEL 321 (671)
Q Consensus 242 ~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 321 (671)
. +.. .....+..+++|+.|++++|.+.+..+.. +..+..+++|+.|
T Consensus 211 ~-------l~~---------------------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~------~~~~~~~~~L~~L 256 (310)
T 4glp_A 211 T-------PTG---------------------VCAALAAAGVQPHSLDLSHNSLRATVNPS------APRCMWSSALNSL 256 (310)
T ss_dssp C-------HHH---------------------HHHHHHHHTCCCSSEECTTSCCCCCCCSC------CSSCCCCTTCCCE
T ss_pred c-------hHH---------------------HHHHHHhcCCCCCEEECCCCCCCccchhh------HHhccCcCcCCEE
Confidence 1 111 01112355678888888888874432211 1222223567777
Q ss_pred EEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCC
Q 005896 322 AIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLK 375 (671)
Q Consensus 322 ~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 375 (671)
++++|.+..+|..+ +++|++|++++|.+.+. |.+..+++|+.|++++|+
T Consensus 257 ~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 257 NLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSSCCCSCCSCC----CSCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred ECCCCCCCchhhhh----cCCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 77777766666654 25677777777775543 445666777777777664
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1.1e-16 Score=156.63 Aligned_cols=128 Identities=28% Similarity=0.438 Sum_probs=98.3
Q ss_pred hhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccc
Q 005896 94 EVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP 173 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp 173 (671)
.....+++|+.|.+.+ +.+ ..+ ..+..+++|++|++++|.+..++ .+..+++|++|++++|.++.+|
T Consensus 35 ~~~~~l~~L~~L~l~~---------~~i-~~~--~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 35 VTQNELNSIDQIIANN---------SDI-KSV--QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp ECHHHHTTCCEEECTT---------SCC-CCC--TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCC
T ss_pred cccccccceeeeeeCC---------CCc-ccc--cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccC
Confidence 3455788899999888 332 122 24778999999999999988764 7889999999999999999885
Q ss_pred -hhhhccccCcEEecCCCccccccchh-hhccCcceEEeecCCccccccCcc-CCCCCCCCcccee
Q 005896 174 -ESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLSNF 236 (671)
Q Consensus 174 -~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~~~ 236 (671)
..++.+++|++|++++| .+..+|.. ++.+++|++|++++|. +..+|.. ++.+++|+.|++.
T Consensus 102 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred hhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECC
Confidence 45789999999999999 67766654 6889999999999998 5555544 4566666665543
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=5.9e-18 Score=171.84 Aligned_cols=239 Identities=11% Similarity=0.054 Sum_probs=142.0
Q ss_pred hhhcCC--CceeEEEecCCCccccCcccCCCCccceeecCCCcccc--cchhhhccccCcEEecCCCccccccchhhhcc
Q 005896 128 DLLPMF--KMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRS--LPESKCKLLNLEILILRNCSRLIKLPQEMRNL 203 (671)
Q Consensus 128 ~~~~~l--~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l 203 (671)
..+..+ +.++.|++++|.+...+..+..+++|++|++++|.++. +|..+..+++|++|++++|......|..++.+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 445555 78888888888887666666778888888888888773 67778888888888888883333667778888
Q ss_pred CcceEEeecCCcccc--ccCccCCCCCCCCccceeEe-cCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccC
Q 005896 204 INLRHLDIRGAKLLK--EMPFGMKELNKLQTLSNFIV-GKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALR 280 (671)
Q Consensus 204 ~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~~~~~-~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~ 280 (671)
++|++|++++|..++ .+|..+.++++|++|++..+ .... ...+..+.
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~------------------------------~~~~~~~~ 191 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE------------------------------KHVQVAVA 191 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH------------------------------HHHHHHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh------------------------------HHHHHHHH
Confidence 888888888883233 24444555666666654333 1110 00112234
Q ss_pred CCC-CCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCC--ccCCCCCCCCCCCCccEEEEeCCC-CCCC
Q 005896 281 EKH-NLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGG--ARFPPWIGQHSFSEMKVLKLENCD-NCAA 356 (671)
Q Consensus 281 ~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~p~~~~~~~l~~L~~L~l~~~~-~~~~ 356 (671)
.++ +|+.|++++|.. .. ..+|..+. .+++|++|++++|. +.+.
T Consensus 192 ~l~~~L~~L~l~~~~~-------------------------------~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 192 HVSETITQLNLSGYRK-------------------------------NLQKSDLSTLVR--RCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp HSCTTCCEEECCSCGG-------------------------------GSCHHHHHHHHH--HCTTCSEEECTTCTTCCGG
T ss_pred hcccCCCEEEeCCCcc-------------------------------cCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHH
Confidence 444 555555555421 11 12233333 36777777777777 3333
Q ss_pred -CCCCCCCCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCC-CccceeeEecC
Q 005896 357 -LPSLGLMSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIF-PRLQELSIAEC 434 (671)
Q Consensus 357 -~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c 434 (671)
++.++.+++|++|++++|..+...... ....+++|+.|+++++ +... .+.. + ..|+.|++++
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~l~~~~~L~~L~l~~~--i~~~--~~~~------l~~~l~~L~l~~- 302 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCYDIIPETLL-----ELGEIPTLKTLQVFGI--VPDG--TLQL------LKEALPHLQINC- 302 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCTTCCGGGGG-----GGGGCTTCCEEECTTS--SCTT--CHHH------HHHHSTTSEESC-
T ss_pred HHHHHhCCCCCCEeeCCCCCCCCHHHHH-----HHhcCCCCCEEeccCc--cCHH--HHHH------HHhhCcceEEec-
Confidence 336777788888888887532221110 1122777888888776 1110 0111 2 3466677755
Q ss_pred CCCccCCCCCC
Q 005896 435 PQLSGELPGLL 445 (671)
Q Consensus 435 ~~l~~~lp~~l 445 (671)
+++++..|..+
T Consensus 303 n~l~~~~~~~~ 313 (336)
T 2ast_B 303 SHFTTIARPTI 313 (336)
T ss_dssp CCSCCTTCSSC
T ss_pred ccCccccCCcc
Confidence 67886666443
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=4e-15 Score=151.41 Aligned_cols=239 Identities=18% Similarity=0.178 Sum_probs=166.2
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCCceeccc-cccCCCccCCCCCcceeeccCcccccccc-cccCCCCccC
Q 005896 344 KVLKLENCDNCAALPSLGLMSSLKILAVKGLKKLKSIES-EVYGEGFSMPFPSLEILSFESLPEWQHWN-TNIKGNEPVE 421 (671)
Q Consensus 344 ~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~ 421 (671)
+.++.+++.+...+..+ .+++++|+|++|. ++.++. .|.+ +++|++|+|+++..++.+. ..+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~------l~~L~~L~Ls~N~i~~~i~~~~f~~----- 77 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSG------FGDLEKIEISQNDVLEVIEADVFSN----- 77 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTT------CTTCCEEEEECCTTCCEECTTSBCS-----
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcC------CCCCCEEECcCCCCCCccChhHhhc-----
Confidence 56777777765443344 3689999999985 445544 3333 6666666666655444332 12222
Q ss_pred CCCccceeeEecCCCCccCCCCCCCCccEEEEeccCCcCccCCCCCCcceEEeccCCCcccccCCCCCccCcc-cCCCCC
Q 005896 422 IFPRLQELSIAECPQLSGELPGLLPSLETLVVRKCGKLVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPN-DMHKLN 500 (671)
Q Consensus 422 ~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~-~~~~l~ 500 (671)
+++|+++...++++++ .++ ...+..+++|++|++++|. +..+|. ......
T Consensus 78 -L~~l~~~l~~~~N~l~-~l~-----------------~~~f~~l~~L~~L~l~~n~----------l~~~~~~~~~~~~ 128 (350)
T 4ay9_X 78 -LPKLHEIRIEKANNLL-YIN-----------------PEAFQNLPNLQYLLISNTG----------IKHLPDVHKIHSL 128 (350)
T ss_dssp -CTTCCEEEEEEETTCC-EEC-----------------TTSBCCCTTCCEEEEEEEC----------CSSCCCCTTCCBS
T ss_pred -chhhhhhhcccCCccc-ccC-----------------chhhhhccccccccccccc----------cccCCchhhcccc
Confidence 4555544444445555 222 2345667778888888776 445544 335667
Q ss_pred CCCeeEeecCCCCcccCCCC---CCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCC
Q 005896 501 SLRDLGIQLCPNLVSFPEEG---FPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTS 577 (671)
Q Consensus 501 ~L~~L~l~~~~~l~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~ 577 (671)
++..|++.++..++.++... ....++.|++++| .++.++...+ ...+|++|++.+ ++.++.+|.+.+ ..+++
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f-~~~~L~~l~l~~-~n~l~~i~~~~f--~~l~~ 203 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAF-NGTQLDELNLSD-NNNLEELPNDVF--HGASG 203 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSS-TTEEEEEEECTT-CTTCCCCCTTTT--TTEEC
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhc-cccchhHHhhcc-CCcccCCCHHHh--ccCcc
Confidence 78899999988888888653 3357899999665 5677776544 567899999998 899999998445 67899
Q ss_pred cCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCCCCCCccEEEEeCC
Q 005896 578 LTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGLPSSLLELHIYGC 634 (671)
Q Consensus 578 L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c 634 (671)
|++|++++ ++++.+|.. .+.+|+.|.+.+|..++.+|....+++|+.+++.+.
T Consensus 204 L~~LdLs~-N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 204 PVILDISR-TRIHSLPSY---GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CSEEECTT-SCCCCCCSS---SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred cchhhcCC-CCcCccChh---hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 99999999 789999943 366778888888889999998777899999999753
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=6.2e-18 Score=175.00 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=48.3
Q ss_pred cCCCCCCCceEEEEecCCCCCCchhhHHHHhc-cCCCCCCCcEEEEeccCC-----ccCCCCCCCCCCCCccEEEEeCCC
Q 005896 279 LREKHNLEALTLEWGSQSDSPRDAVLEEKVLD-TLQPHERIKELAIKHYGG-----ARFPPWIGQHSFSEMKVLKLENCD 352 (671)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~-----~~~p~~~~~~~l~~L~~L~l~~~~ 352 (671)
+..+++|+.|++++|.+.. ........ .+..+++|+.|++++|.+ ..+|..+. .+++|++|++++|.
T Consensus 183 l~~~~~L~~L~L~~n~l~~-----~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRP-----EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLNDCL 255 (386)
T ss_dssp HHHCTTCCEEECCSSCCCH-----HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTTCC
T ss_pred HHhCCCcCEEECcCCCCCH-----hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc--cCCCcCEEECCCCC
Confidence 4455577777777766510 00011222 444556666666666655 33444444 35666666666666
Q ss_pred CCCC----CC-CC--CCCCCccEEEEeCCCC
Q 005896 353 NCAA----LP-SL--GLMSSLKILAVKGLKK 376 (671)
Q Consensus 353 ~~~~----~~-~l--~~l~~L~~L~L~~~~~ 376 (671)
+.+. ++ .+ +.+++|++|+|++|..
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 5432 22 23 3366666666666643
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=2.4e-15 Score=145.27 Aligned_cols=173 Identities=18% Similarity=0.219 Sum_probs=108.0
Q ss_pred CceeEEEecCCCccccCcccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccch-hhhccCcceEEee
Q 005896 134 KMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDI 211 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L 211 (671)
...++++++++.+..+|..+. .+|++|+|++|.++.+ |..++++++|++|+|++| .+..++. .+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 345677788887877776664 5778888888888766 446777888888888887 5555444 4677888888888
Q ss_pred cCCccccccCcc-CCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEE
Q 005896 212 RGAKLLKEMPFG-MKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTL 290 (671)
Q Consensus 212 ~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 290 (671)
++|. +..+|.. +..+++|++|++..+.....+. ..+..+
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------------~~~~~l-------- 130 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPS-------------------------------GVFDRL-------- 130 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------------TTTTTC--------
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcCh-------------------------------hHhccC--------
Confidence 8877 4444433 5555555555543332211110 112222
Q ss_pred EEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCC-CCCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCccE
Q 005896 291 EWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPP-WIGQHSFSEMKVLKLENCDNCAALP-SLGLMSSLKI 368 (671)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~ 368 (671)
++|+.|++++|.+..+|. .+. .+++|++|++++|.+.+..+ .+..+++|++
T Consensus 131 -------------------------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 131 -------------------------TKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp -------------------------TTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred -------------------------CcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 344444444444444554 233 47778888888887766555 5777788888
Q ss_pred EEEeCCCC
Q 005896 369 LAVKGLKK 376 (671)
Q Consensus 369 L~L~~~~~ 376 (671)
|++++|+.
T Consensus 184 L~l~~N~~ 191 (251)
T 3m19_A 184 ITLFGNQF 191 (251)
T ss_dssp EECCSCCB
T ss_pred EEeeCCce
Confidence 88877753
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=1.6e-17 Score=171.87 Aligned_cols=244 Identities=18% Similarity=0.152 Sum_probs=171.5
Q ss_pred hhhhcccCCccEEecccccccCCCCCcccchhh---hhhhhcCCCceeEEEecCCCccc----cCccc-------CCCCc
Q 005896 93 FEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSV---LSDLLPMFKMLRMLSLQGYRIGE----LPIPF-------EDLRL 158 (671)
Q Consensus 93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~L~~~~l~~----lp~~~-------~~l~~ 158 (671)
...+..+++|++|.+.+ |.+.... ....|..+++|++|+|++|.+.. +|..+ ..+++
T Consensus 25 ~~~l~~~~~L~~L~L~~---------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSG---------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp SHHHHHCSCCCEEECTT---------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHhcCCCccEEECCC---------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 45567889999999998 4443332 33457889999999999986543 34333 78899
Q ss_pred cceeecCCCcccc-----cchhhhccccCcEEecCCCcccc-----ccchhhhcc---------CcceEEeecCCccc-c
Q 005896 159 LRFLNLADTDIRS-----LPESKCKLLNLEILILRNCSRLI-----KLPQEMRNL---------INLRHLDIRGAKLL-K 218 (671)
Q Consensus 159 L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~l---------~~L~~L~L~~~~~~-~ 218 (671)
|++|+|++|.++. +|..+..+++|++|+|++| .++ .++..+..+ ++|++|++++|.+. .
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 9999999999986 6888999999999999999 554 233334445 89999999999843 3
Q ss_pred ccC---ccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecC
Q 005896 219 EMP---FGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQ 295 (671)
Q Consensus 219 ~~p---~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (671)
.+| ..+..+++|++|++..+..... ......+..+..+++|+.|++++|.+
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~--------------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPE--------------------------GIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHH--------------------------HHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHh--------------------------HHHHHHHHHhhcCCCccEEECcCCCC
Confidence 444 3566788888888765543210 00011222577788999999998887
Q ss_pred CCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccC-----CCCCCCCCCCCccEEEEeCCCCCC----CCC-CC-CCCC
Q 005896 296 SDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARF-----PPWIGQHSFSEMKVLKLENCDNCA----ALP-SL-GLMS 364 (671)
Q Consensus 296 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~l~~~~~~~----~~~-~l-~~l~ 364 (671)
.. .........+..+++|+.|++++|.+... |..+....+++|++|++++|.+.. .+| .+ .+++
T Consensus 229 ~~-----~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 229 TH-----LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp HH-----HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred Cc-----HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 11 11123344566778899999999886543 444421147899999999999876 355 45 5689
Q ss_pred CccEEEEeCCCCc
Q 005896 365 SLKILAVKGLKKL 377 (671)
Q Consensus 365 ~L~~L~L~~~~~~ 377 (671)
+|++|++++|...
T Consensus 304 ~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 304 DLLFLELNGNRFS 316 (386)
T ss_dssp TCCEEECTTSBSC
T ss_pred CceEEEccCCcCC
Confidence 9999999998654
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=6.2e-16 Score=152.73 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=56.5
Q ss_pred cCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEe
Q 005896 131 PMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLD 210 (671)
Q Consensus 131 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 210 (671)
..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++. ++.+++|++|++++| .+..+|. ++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 34555666666666665553 35556666666666666666544 666666666666666 5555554 66666666666
Q ss_pred ecCCccccccCccCCCCCCCCccce
Q 005896 211 IRGAKLLKEMPFGMKELNKLQTLSN 235 (671)
Q Consensus 211 L~~~~~~~~~p~~l~~l~~L~~L~~ 235 (671)
+++|. +..+ ..+..+++|+.|++
T Consensus 119 L~~n~-i~~~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 119 LEHNG-ISDI-NGLVHLPQLESLYL 141 (291)
T ss_dssp CTTSC-CCCC-GGGGGCTTCCEEEC
T ss_pred CCCCc-CCCC-hhhcCCCCCCEEEc
Confidence 66665 3333 23444444444443
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=4.3e-15 Score=148.50 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=84.6
Q ss_pred CCCCcceEEeccCCCcccccCCCCCccC-cccCCCCCCCCeeEeecCCCCcc--cCCC---CCCCCcceEEEccCcCccc
Q 005896 465 SYPMLCRLEVDECKELVDICGCDKLEAL-PNDMHKLNSLRDLGIQLCPNLVS--FPEE---GFPTNLTTLVIGNFKLYKT 538 (671)
Q Consensus 465 ~~~~L~~L~l~~~~~~~~i~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~--~~~~---~~~~~L~~L~l~~~~~l~~ 538 (671)
.+++|++|++++|. +..+ |..+..+++|++|++++|...+. ++.. ..+++|++|++++|.. +.
T Consensus 143 ~~~~L~~L~Ls~n~----------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ 211 (310)
T 4glp_A 143 LKPGLKVLSIAQAH----------SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ET 211 (310)
T ss_dssp BCSCCCEEEEECCS----------SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CC
T ss_pred hccCCCEEEeeCCC----------cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-Cc
Confidence 35666666666665 2333 24456666677777776643321 2111 2445667777765543 32
Q ss_pred cc---ccccCCCCCcCeEEecccCCCcccC-CcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCC
Q 005896 539 LV---QWGLHRLTSLKHLWIAVSDDEAECF-PDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNL 614 (671)
Q Consensus 539 ~~---~~~~~~l~~L~~L~l~~~c~~~~~i-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l 614 (671)
++ ...+..+++|++|++++ +.++.+ |........+++|++|++++ ++++.+| ..+. ++|++|++++| .+
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~--N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp-~~~~--~~L~~L~Ls~N-~l 284 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSH--NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVP-KGLP--AKLRVLDLSSN-RL 284 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTT--SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCC-SCCC--SCCSCEECCSC-CC
T ss_pred hHHHHHHHHhcCCCCCEEECCC--CCCCccchhhHHhccCcCcCCEEECCC-CCCCchh-hhhc--CCCCEEECCCC-cC
Confidence 22 11235567777777776 445544 43111111236777777776 5566666 3332 67777777777 66
Q ss_pred CcCCCCCCCCCccEEEEeCCh
Q 005896 615 TSFPEVGLPSSLLELHIYGCP 635 (671)
Q Consensus 615 ~~~~~~~~~~~L~~L~l~~c~ 635 (671)
+.+|....+++|+.|++++++
T Consensus 285 ~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 285 NRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCCTTSCCCCSCEECSSTT
T ss_pred CCCchhhhCCCccEEECcCCC
Confidence 666554456677777777664
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=8.4e-16 Score=164.45 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=138.2
Q ss_pred ceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCC
Q 005896 135 MLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGA 214 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 214 (671)
+|++|++++|.++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++| .+..+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 89999999999988887663 78999999999999888 56789999999998 7777888 665 8999999999
Q ss_pred ccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEec
Q 005896 215 KLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGS 294 (671)
Q Consensus 215 ~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (671)
. +..+|. .+++|+.|++..+.....+ . .+++|+.|++++|.
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N~l~~lp--------------------------------~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNNQLTMLP--------------------------------E---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSSCCSCCC--------------------------------C---CCTTCCEEECCSSC
T ss_pred c-CCCCCC---cCccccEEeCCCCccCcCC--------------------------------C---cCCCcCEEECCCCC
Confidence 8 556877 6788888887655432211 0 24578888888888
Q ss_pred CCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCCCCCc-------cEEEEeCCCCCCCCCCCCCCCCcc
Q 005896 295 QSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHSFSEM-------KVLKLENCDNCAALPSLGLMSSLK 367 (671)
Q Consensus 295 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~l~~~~~~~~~~~l~~l~~L~ 367 (671)
+...+. +. ++|+.|++++|.+..+|. +.. +| +.|++++|.+....+.+..+++|+
T Consensus 172 L~~lp~-----------l~--~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 172 LTFLPE-----------LP--ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRITHIPENILSLDPTC 233 (571)
T ss_dssp CSCCCC-----------CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTE
T ss_pred CCCcch-----------hh--CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCcceecCHHHhcCCCCC
Confidence 744221 22 788889998888888887 432 56 899999998775433677789999
Q ss_pred EEEEeCCCCceeccccc
Q 005896 368 ILAVKGLKKLKSIESEV 384 (671)
Q Consensus 368 ~L~L~~~~~~~~~~~~~ 384 (671)
.|+|++|+....++..+
T Consensus 234 ~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 234 TIILEDNPLSSRIRESL 250 (571)
T ss_dssp EEECCSSSCCHHHHHHH
T ss_pred EEEeeCCcCCCcCHHHH
Confidence 99999887666555443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=1.7e-15 Score=149.62 Aligned_cols=125 Identities=22% Similarity=0.298 Sum_probs=90.7
Q ss_pred hhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccch
Q 005896 95 VFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPE 174 (671)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~ 174 (671)
....+++|+.|.+.+ +.+ ..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.+|.
T Consensus 41 ~~~~l~~L~~L~l~~---------~~i-~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 107 (291)
T 1h6t_A 41 TQNELNSIDQIIANN---------SDI-KSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS 107 (291)
T ss_dssp CHHHHHTCCEEECTT---------SCC-CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG
T ss_pred chhhcCcccEEEccC---------CCc-ccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh
Confidence 345677888888877 332 2222 36778888888888888877766 7888888888888888888754
Q ss_pred hhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeE
Q 005896 175 SKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFI 237 (671)
Q Consensus 175 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~ 237 (671)
++.+++|++|++++| .+..++ .+..+++|++|++++|. +..+ ..++.+++|+.|++..
T Consensus 108 -l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLED 165 (291)
T ss_dssp -GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCS
T ss_pred -hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccC
Confidence 888888888888888 677765 47888888888888887 4444 3455566666665433
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=3.5e-17 Score=166.07 Aligned_cols=35 Identities=3% Similarity=-0.147 Sum_probs=20.4
Q ss_pred CCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCC
Q 005896 341 SEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLK 375 (671)
Q Consensus 341 ~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~ 375 (671)
++++.|++++|.+.+..+.+..+++|++|++++|.
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV 104 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCC
Confidence 45566666666555554545556666666666654
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=9.5e-15 Score=141.09 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=120.4
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-c
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-I 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~ 151 (671)
.+..++.+.+..+.+... ....+.++++|++|.+.+ |.+ ..+++..|..+++|++|++++|.++.+| .
T Consensus 33 ~~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDY---------NQL-QTLSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTT---------SCC-CCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCC---------CcC-CccCHhHhccCCcCCEEECCCCcccccChh
Confidence 456788888888776553 345677888899998888 443 3456667888889999999998888776 4
Q ss_pred ccCCCCccceeecCCCcccccchh-hhccccCcEEecCCCccccccch-hhhccCcceEEeecCCccccccCc-cCCCCC
Q 005896 152 PFEDLRLLRFLNLADTDIRSLPES-KCKLLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDIRGAKLLKEMPF-GMKELN 228 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~-~l~~l~ 228 (671)
.|..+++|++|+|++|.++.+|.. ++.+++|++|+|++| .+..+|. .++.+++|++|++++|. +..+|. .+..++
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 179 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCC
Confidence 568888999999999988888654 688889999999888 7777776 57888899999999888 455554 588888
Q ss_pred CCCccceeEecCC
Q 005896 229 KLQTLSNFIVGKG 241 (671)
Q Consensus 229 ~L~~L~~~~~~~~ 241 (671)
+|+.|++..+...
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 8888887766544
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=7.3e-16 Score=166.91 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=74.3
Q ss_pred hcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEE
Q 005896 130 LPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHL 209 (671)
Q Consensus 130 ~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 209 (671)
+..+++|+.|++++|.+..+| .+..+++|++|+|++|.++.+|. +..+++|+.|+|++| .+..+| .+..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 456777888888888877775 57778888888888888887765 778888888888887 676666 47778888888
Q ss_pred eecCCccccccCccCCCCCCCCccceeEe
Q 005896 210 DIRGAKLLKEMPFGMKELNKLQTLSNFIV 238 (671)
Q Consensus 210 ~L~~~~~~~~~p~~l~~l~~L~~L~~~~~ 238 (671)
+|++|. +..+| .+..+++|+.|++..+
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLYLGNN 141 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEECCSS
T ss_pred EecCCC-CCCCc-cccCCCccCEEECCCC
Confidence 888887 44443 4666666666665443
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=2.3e-15 Score=163.04 Aligned_cols=127 Identities=24% Similarity=0.289 Sum_probs=94.4
Q ss_pred hhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccc
Q 005896 94 EVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP 173 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp 173 (671)
..+..+++|+.|.+.+ +.+ ..++ .+..+++|+.|+|++|.+..+|. +..+++|++|+|++|.++.+|
T Consensus 37 ~~~~~L~~L~~L~l~~---------n~i-~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 37 VTQNELNSIDQIIANN---------SDI-KSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp ECHHHHTTCCCCBCTT---------CCC-CCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred cchhcCCCCCEEECcC---------CCC-CCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh
Confidence 3456778888888877 332 2222 37788888888888888877765 788888888888888888876
Q ss_pred hhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEe
Q 005896 174 ESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIV 238 (671)
Q Consensus 174 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~ 238 (671)
.+..+++|+.|+|++| .+..+|. +..+++|+.|+|++|. +..+ ..+..+++|+.|++..+
T Consensus 104 -~l~~l~~L~~L~Ls~N-~l~~l~~-l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHN-GISDING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp -TSTTCTTCCEEECTTS-CCCCCGG-GGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSS
T ss_pred -hhccCCCCCEEEecCC-CCCCCcc-ccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCC
Confidence 6888888888888888 6777654 8888888888888887 4444 45666667776665443
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=4.1e-16 Score=159.61 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=43.5
Q ss_pred hhhcCCCceeEEEecCCCccccC-----cccCCCC-ccceeecCCCccccc-chhhhcc-----ccCcEEecCCCccccc
Q 005896 128 DLLPMFKMLRMLSLQGYRIGELP-----IPFEDLR-LLRFLNLADTDIRSL-PESKCKL-----LNLEILILRNCSRLIK 195 (671)
Q Consensus 128 ~~~~~l~~L~~L~L~~~~l~~lp-----~~~~~l~-~L~~L~L~~n~i~~l-p~~i~~L-----~~L~~L~L~~~~~l~~ 195 (671)
.++...++|++|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..++.+ ++|++|+|++| .++.
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~ 94 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSY 94 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGG
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCCh
Confidence 34444444566666655555443 3344455 556666665555533 3444443 55666666555 3432
Q ss_pred c-chhh----hcc-CcceEEeecCCc
Q 005896 196 L-PQEM----RNL-INLRHLDIRGAK 215 (671)
Q Consensus 196 l-p~~i----~~l-~~L~~L~L~~~~ 215 (671)
. +..+ ..+ ++|++|++++|.
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCc
Confidence 2 2222 222 555666665555
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=7.8e-15 Score=135.87 Aligned_cols=146 Identities=12% Similarity=0.152 Sum_probs=84.7
Q ss_pred CceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccc-cCccc
Q 005896 75 ERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGE-LPIPF 153 (671)
Q Consensus 75 ~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~~ 153 (671)
..++.+.+..+.+.. .+.+..+++|++|.+.+ |.+ ..+ ..+..+++|++|++++|.+.. .|..+
T Consensus 44 ~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~l~~---------n~~--~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 44 NSLTYITLANINVTD---LTGIEYAHNIKDLTINN---------IHA--TNY-NPISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HTCCEEEEESSCCSC---CTTGGGCTTCSEEEEES---------CCC--SCC-GGGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred CCccEEeccCCCccC---hHHHhcCCCCCEEEccC---------CCC--Ccc-hhhhcCCCCCEEEeECCccCcccChhh
Confidence 356666666654442 22455666666666666 211 111 245666666666666666643 45566
Q ss_pred CCCCccceeecCCCcccc-cchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCc
Q 005896 154 EDLRLLRFLNLADTDIRS-LPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQT 232 (671)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 232 (671)
+.+++|++|++++|.++. .|..++.+++|++|++++|..++.+| .+..+++|++|++++|. +..++ .+..+++|+.
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQ 185 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCE
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCE
Confidence 666666666666666663 45666666666666666663366665 36666666666666666 44444 4555555555
Q ss_pred cceeEe
Q 005896 233 LSNFIV 238 (671)
Q Consensus 233 L~~~~~ 238 (671)
|++..+
T Consensus 186 L~l~~N 191 (197)
T 4ezg_A 186 LYAFSQ 191 (197)
T ss_dssp EEECBC
T ss_pred EEeeCc
Confidence 554433
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=3.9e-14 Score=132.56 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=54.1
Q ss_pred eEEEecCCCccccCcccCCCCccceeecCCCcccccch-hhhccccCcEEecCCCccccccchh-hhccCcceEEeecCC
Q 005896 137 RMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPE-SKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRGA 214 (671)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~ 214 (671)
+.++.+++.+..+|..+ .++|++|++++|.++.+|. .++.+++|++|++++| .+..+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 45666666777776554 3477777777777776643 4667777777777777 66666554 467777777777777
Q ss_pred ccccccC
Q 005896 215 KLLKEMP 221 (671)
Q Consensus 215 ~~~~~~p 221 (671)
. +..+|
T Consensus 87 ~-l~~~~ 92 (208)
T 2o6s_A 87 Q-LQSLP 92 (208)
T ss_dssp C-CCCCC
T ss_pred c-CCccC
Confidence 6 44444
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=9.1e-15 Score=156.44 Aligned_cols=189 Identities=20% Similarity=0.172 Sum_probs=131.0
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhcc
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKL 179 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L 179 (671)
.+++.|.+.+ +.+. .++... +++|++|+|++|.++.+| ..+++|++|+|++|.|+.+|. +.+
T Consensus 59 ~~L~~L~Ls~---------n~L~-~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~- 120 (571)
T 3cvr_A 59 NQFSELQLNR---------LNLS-SLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA- 120 (571)
T ss_dssp TTCSEEECCS---------SCCS-CCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT-
T ss_pred CCccEEEeCC---------CCCC-ccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc-
Confidence 3788888877 3332 244333 367888888888888887 456788888888888888877 655
Q ss_pred ccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCc
Q 005896 180 LNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDE 259 (671)
Q Consensus 180 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~ 259 (671)
+|++|+|++| .+..+|. .+++|++|++++|. +..+|. .+++|+.|++..+.....+.
T Consensus 121 -~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-------------- 177 (571)
T 3cvr_A 121 -SLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-------------- 177 (571)
T ss_dssp -TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC--------------
T ss_pred -CCCEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch--------------
Confidence 8888888888 6777777 67888888888888 555776 56777877765554332111
Q ss_pred cEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCCCCCCcEEEEeccCCccCCCCCCCCC
Q 005896 260 LCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQPHERIKELAIKHYGGARFPPWIGQHS 339 (671)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 339 (671)
+. ++|+.|++++|.+...+. ... .-....+.|+.|++++|.+..+|..++ .
T Consensus 178 -------------------l~--~~L~~L~Ls~N~L~~lp~--~~~----~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~ 228 (571)
T 3cvr_A 178 -------------------LP--ESLEALDVSTNLLESLPA--VPV----RNHHSEETEIFFRCRENRITHIPENIL--S 228 (571)
T ss_dssp -------------------CC--TTCCEEECCSSCCSSCCC--CC------------CCEEEECCSSCCCCCCGGGG--G
T ss_pred -------------------hh--CCCCEEECcCCCCCchhh--HHH----hhhcccccceEEecCCCcceecCHHHh--c
Confidence 11 478888888887743222 100 001122344999999999999999888 4
Q ss_pred CCCccEEEEeCCCCCCCCC
Q 005896 340 FSEMKVLKLENCDNCAALP 358 (671)
Q Consensus 340 l~~L~~L~l~~~~~~~~~~ 358 (671)
+++|+.|++++|.+.+..|
T Consensus 229 l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SCTTEEEECCSSSCCHHHH
T ss_pred CCCCCEEEeeCCcCCCcCH
Confidence 9999999999999877655
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=2.6e-15 Score=145.73 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=41.2
Q ss_pred CCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeec
Q 005896 133 FKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIR 212 (671)
Q Consensus 133 l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 212 (671)
+.++..++++++.+..++ .+..+++|++|++++|.++.+| .++.+++|++|++++| .+..+|. ++.+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 334444455555555444 3445555555555555555554 4555555555555555 4554544 5555555555555
Q ss_pred CCc
Q 005896 213 GAK 215 (671)
Q Consensus 213 ~~~ 215 (671)
+|.
T Consensus 94 ~N~ 96 (263)
T 1xeu_A 94 RNR 96 (263)
T ss_dssp SSC
T ss_pred CCc
Confidence 555
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3e-14 Score=128.25 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=108.6
Q ss_pred ccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccc-cchhh
Q 005896 98 EIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRS-LPESK 176 (671)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~i 176 (671)
..++|+.|.+.+ +.+.....+..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+
T Consensus 22 ~~~~L~~L~l~~---------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDN---------CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCS---------CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCC---------CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 347888888888 4443123345578899999999999998887 778899999999999999987 67778
Q ss_pred hccccCcEEecCCCccccccc--hhhhccCcceEEeecCCccccccCc----cCCCCCCCCccceeEecCCccc
Q 005896 177 CKLLNLEILILRNCSRLIKLP--QEMRNLINLRHLDIRGAKLLKEMPF----GMKELNKLQTLSNFIVGKGECA 244 (671)
Q Consensus 177 ~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~~~p~----~l~~l~~L~~L~~~~~~~~~~~ 244 (671)
..+++|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .+..+++|+.|++..+.....+
T Consensus 92 ~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 92 EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 88999999999998 788776 578899999999999998 666666 6888999999988777655433
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=5.4e-14 Score=130.18 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=117.7
Q ss_pred cccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccc-cchh
Q 005896 97 NEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRS-LPES 175 (671)
Q Consensus 97 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~ 175 (671)
..+++|+.|.+.+ +.+. .++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..
T Consensus 41 ~~l~~L~~L~l~~---------n~i~-~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 41 AQMNSLTYITLAN---------INVT-DLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HHHHTCCEEEEES---------SCCS-CCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC
T ss_pred hhcCCccEEeccC---------CCcc-ChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh
Confidence 5788999999998 4432 333 4888999999999999887764 78899999999999999995 6888
Q ss_pred hhccccCcEEecCCCcccc-ccchhhhccCcceEEeecCCccccccCccCCCCCCCCccceeEecCCcccccccCchhhH
Q 005896 176 KCKLLNLEILILRNCSRLI-KLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLN 254 (671)
Q Consensus 176 i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~ 254 (671)
++.+++|++|++++| .+. ..|..++.+++|++|++++|..++.+| .+..+++|+.|++..+....... +..+++|+
T Consensus 108 l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~-l~~l~~L~ 184 (197)
T 4ezg_A 108 LSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG-IEDFPKLN 184 (197)
T ss_dssp CTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTT-GGGCSSCC
T ss_pred hcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHH-hccCCCCC
Confidence 999999999999999 555 577889999999999999998677777 68999999999998887665442 55555555
Q ss_pred hc
Q 005896 255 LL 256 (671)
Q Consensus 255 ~L 256 (671)
.|
T Consensus 185 ~L 186 (197)
T 4ezg_A 185 QL 186 (197)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=6e-14 Score=133.14 Aligned_cols=130 Identities=24% Similarity=0.382 Sum_probs=112.1
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCc-ccCCCCccceeecCCCcccccch-hhh
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSLPE-SKC 177 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~-~i~ 177 (671)
++|+.|.+.+ |.+ ..+.+..|..+++|++|+|++|.++.+|. .|..+++|++|+|++|.|+.+|. .+.
T Consensus 40 ~~L~~L~Ls~---------n~i-~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHD---------NQI-TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp TTCSEEECCS---------SCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEEcCC---------Ccc-CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 8899999999 444 44566789999999999999999998884 46899999999999999998864 478
Q ss_pred ccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCcc-CCCCCCCCccceeEecCC
Q 005896 178 KLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLSNFIVGKG 241 (671)
Q Consensus 178 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~ 241 (671)
.+++|++|+|++| .+..+|..+..+++|++|++++|. +..+|.. +..+++|+.|++..+...
T Consensus 110 ~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 110 RLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999999999999 888999999999999999999998 6667654 888999999987766543
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.1e-13 Score=130.47 Aligned_cols=94 Identities=23% Similarity=0.394 Sum_probs=66.7
Q ss_pred eEEEecCCCccccCcccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCcccccc-chhhhccCcceEEeecCC
Q 005896 137 RMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRGA 214 (671)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~ 214 (671)
+.++++++.++.+|..+. ++|++|+|++|.|+.+| ..+..+++|++|+|++| .+..+ |..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 567788888888887654 67888888888888775 36788888888888888 55544 666788888888888888
Q ss_pred ccccccCcc-CCCCCCCCccc
Q 005896 215 KLLKEMPFG-MKELNKLQTLS 234 (671)
Q Consensus 215 ~~~~~~p~~-l~~l~~L~~L~ 234 (671)
. +..+|.+ +..+++|+.|+
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEE
T ss_pred c-CCccCHhHccCCCCCCEEE
Confidence 7 5556544 34444444433
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=1.1e-14 Score=141.30 Aligned_cols=168 Identities=20% Similarity=0.235 Sum_probs=130.3
Q ss_pred CCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCccc
Q 005896 155 DLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLS 234 (671)
Q Consensus 155 ~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 234 (671)
.+.++..++++++.++.++ .+..+++|++|++++| .+..+| .+..+++|++|++++|. +..+|. +.++++|+.|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence 5778899999999999987 6899999999999999 888998 59999999999999999 667776 89999999998
Q ss_pred eeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEecCCCCCCchhhHHHHhccCCC
Q 005896 235 NFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWGSQSDSPRDAVLEEKVLDTLQP 314 (671)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 314 (671)
+..+.....+. +.. ++|+.|++++|.+.. +..+..
T Consensus 92 L~~N~l~~l~~---------------------------------~~~-~~L~~L~L~~N~l~~-----------~~~l~~ 126 (263)
T 1xeu_A 92 VNRNRLKNLNG---------------------------------IPS-ACLSRLFLDNNELRD-----------TDSLIH 126 (263)
T ss_dssp CCSSCCSCCTT---------------------------------CCC-SSCCEEECCSSCCSB-----------SGGGTT
T ss_pred CCCCccCCcCc---------------------------------ccc-CcccEEEccCCccCC-----------ChhhcC
Confidence 76665332211 112 578888888887732 134566
Q ss_pred CCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCCCCCCCCCCccEEEEeCCCC
Q 005896 315 HERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAALPSLGLMSSLKILAVKGLKK 376 (671)
Q Consensus 315 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 376 (671)
+++|+.|++++|.+..++ .+. .+++|++|++++|.+.+. +.+..+++|+.|++++|+.
T Consensus 127 l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred cccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 678888888888777765 343 477888888888876554 6677788888888887753
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=3.6e-14 Score=124.95 Aligned_cols=126 Identities=22% Similarity=0.261 Sum_probs=103.2
Q ss_pred ccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccc-cchhh
Q 005896 98 EIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRS-LPESK 176 (671)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~i 176 (671)
..++|+.|.+.+ +.+.....+..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..+
T Consensus 15 ~~~~l~~L~l~~---------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 15 TPSDVKELVLDN---------SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp CGGGCSEEECTT---------CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred CCccCeEEEccC---------CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 347888888888 4443123345678899999999999999887 778899999999999999997 78888
Q ss_pred hccccCcEEecCCCccccccc--hhhhccCcceEEeecCCccccccCc----cCCCCCCCCccce
Q 005896 177 CKLLNLEILILRNCSRLIKLP--QEMRNLINLRHLDIRGAKLLKEMPF----GMKELNKLQTLSN 235 (671)
Q Consensus 177 ~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~~~p~----~l~~l~~L~~L~~ 235 (671)
+.+++|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .+..+++|+.|++
T Consensus 85 ~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 85 EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 88999999999999 777765 678999999999999998 566665 5788888988875
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=1.7e-13 Score=129.95 Aligned_cols=136 Identities=22% Similarity=0.278 Sum_probs=70.0
Q ss_pred CccCcccCCCCCCCCeeEeecCCCCcccCCC--CCCCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCC
Q 005896 489 LEALPNDMHKLNSLRDLGIQLCPNLVSFPEE--GFPTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFP 566 (671)
Q Consensus 489 l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~ 566 (671)
++++|..+. ++|+.|++++| .++.++.. ..+++|++|++++|. ++.++...+.++++|+.|++++ +.++.++
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~--N~l~~l~ 104 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT--NQLTVLP 104 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS--SCCCCCC
T ss_pred cCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC--CcCCccC
Confidence 344444332 45555555555 33333221 234555555554433 3444444455566666666665 4555555
Q ss_pred cccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCC--CCCCCccEEEEeCCh
Q 005896 567 DEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEV--GLPSSLLELHIYGCP 635 (671)
Q Consensus 567 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 635 (671)
...+ ..+++|++|++++ ++++.+| ..+..+++|++|++++| .++.++.. ..+++|+.|++.++|
T Consensus 105 ~~~~--~~l~~L~~L~Ls~-N~l~~lp-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 105 SAVF--DRLVHLKELFMCC-NKLTELP-RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTT--TTCTTCCEEECCS-SCCCSCC-TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhHh--CcchhhCeEeccC-CcccccC-cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 4222 3455666666665 4566665 45556666666666666 55555542 224566666666554
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=8.2e-15 Score=149.91 Aligned_cols=240 Identities=12% Similarity=0.072 Sum_probs=153.5
Q ss_pred hhhhccc-CCccEEecccccccCCCCCcccchhhhh----hhhcCCC-ceeEEEecCCCcccc-CcccCCC-----Cccc
Q 005896 93 FEVFNEI-GHLRTFLPLRLRIRGGSNTSYITRSVLS----DLLPMFK-MLRMLSLQGYRIGEL-PIPFEDL-----RLLR 160 (671)
Q Consensus 93 ~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~l~~l-p~~~~~l-----~~L~ 160 (671)
.+.+... ++|+.|.+.+ |.+ ..... ..|..++ +|++|+|++|.++.. +..+..+ ++|+
T Consensus 14 ~~~~~~~~~~L~~L~Ls~---------n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSL---------NNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp HHHHHTSCTTCCEEECTT---------SCG-GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHHhCCCCceEEEccC---------CCC-ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 3444444 4499999988 333 22222 6677888 899999999988665 3445443 8899
Q ss_pred eeecCCCccccc-chhhh----cc-ccCcEEecCCCccccccch-hh----hc-cCcceEEeecCCcccc----ccCccC
Q 005896 161 FLNLADTDIRSL-PESKC----KL-LNLEILILRNCSRLIKLPQ-EM----RN-LINLRHLDIRGAKLLK----EMPFGM 224 (671)
Q Consensus 161 ~L~L~~n~i~~l-p~~i~----~L-~~L~~L~L~~~~~l~~lp~-~i----~~-l~~L~~L~L~~~~~~~----~~p~~l 224 (671)
+|+|++|.++.. +..++ .+ ++|++|++++| .++..+. .+ .. .++|++|++++|.+.. .++..+
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999998855 44444 44 78999999998 5665543 33 33 2689999999998432 334444
Q ss_pred CCCC-CCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCC-CCCCceEEEEecCCCCCCch
Q 005896 225 KELN-KLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREK-HNLEALTLEWGSQSDSPRDA 302 (671)
Q Consensus 225 ~~l~-~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~ 302 (671)
..++ +|++|++..+....... ..+...+..+ ++|+.|++++|.+.....
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~---------------------------~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-- 213 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNC---------------------------AELAKFLASIPASVTSLDLSANLLGLKSY-- 213 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCH---------------------------HHHHHHHHTSCTTCCEEECTTSCGGGSCH--
T ss_pred hcCCccccEeeecCCCCchhhH---------------------------HHHHHHHHhCCCCCCEEECCCCCCChhHH--
Confidence 5555 88888876554322110 1111234444 488888888887733211
Q ss_pred hhHHHHhccCCC-CCCCcEEEEeccCCccCCC-----CCCCCCCCCccEEEEeCCCCCCC-------C-CCCCCCCCccE
Q 005896 303 VLEEKVLDTLQP-HERIKELAIKHYGGARFPP-----WIGQHSFSEMKVLKLENCDNCAA-------L-PSLGLMSSLKI 368 (671)
Q Consensus 303 ~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~-----~~~~~~l~~L~~L~l~~~~~~~~-------~-~~l~~l~~L~~ 368 (671)
......+.. .++|+.|++++|.+...+. .+. .+++|++|++++|.+... + ..+..+++|+.
T Consensus 214 ---~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~--~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 214 ---AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD--SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp ---HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT--TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred ---HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh--cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence 112222222 3588899998888665432 223 578899999999973322 1 25678889999
Q ss_pred EEEeCCCCc
Q 005896 369 LAVKGLKKL 377 (671)
Q Consensus 369 L~L~~~~~~ 377 (671)
|++++|...
T Consensus 289 LdL~~N~l~ 297 (362)
T 3goz_A 289 VDKNGKEIH 297 (362)
T ss_dssp ECTTSCBCC
T ss_pred EecCCCcCC
Confidence 999998643
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=2.2e-13 Score=128.34 Aligned_cols=129 Identities=26% Similarity=0.349 Sum_probs=108.2
Q ss_pred CCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcccc-CcccCCCCccceeecCCCcccccchh-hh
Q 005896 100 GHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGEL-PIPFEDLRLLRFLNLADTDIRSLPES-KC 177 (671)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-i~ 177 (671)
++++.|.+.+ |.+ ..+++..|..+++|++|+|++|.+..+ |..|..+++|++|+|++|.|+.+|.. +.
T Consensus 32 ~~l~~L~l~~---------n~i-~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQ---------NTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp TTCCEEECCS---------SCC-CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCEEECCC---------CcC-CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 6899999988 444 456667899999999999999999877 67899999999999999999999755 68
Q ss_pred ccccCcEEecCCCcccccc-chhhhccCcceEEeecCCccccccCcc-CCCCCCCCccceeEecC
Q 005896 178 KLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLSNFIVGK 240 (671)
Q Consensus 178 ~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~ 240 (671)
.+++|++|+|++| .+..+ |..|..+++|++|+|++|. +..++.+ +..+++|+.|++..+..
T Consensus 102 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 102 GLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8999999999999 66655 5568999999999999999 5566654 88899999998766654
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=129.35 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=116.0
Q ss_pred EEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCc-ccCCCC
Q 005896 79 HSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPI-PFEDLR 157 (671)
Q Consensus 79 ~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~ 157 (671)
.+.+..+.+..+ +..+ .+.++.|.+.+ |.+....+..+|..+++|++|+|++|.++.++. .|..++
T Consensus 15 ~l~~s~n~l~~i--P~~~--~~~~~~L~L~~---------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 15 TVDCSNQKLNKI--PEHI--PQYTAELRLNN---------NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81 (220)
T ss_dssp EEECCSSCCSSC--CSCC--CTTCSEEECCS---------SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EeEeCCCCcccC--ccCC--CCCCCEEEcCC---------CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC
Confidence 455655544432 2222 34678999988 554333345678999999999999999988874 789999
Q ss_pred ccceeecCCCcccccc-hhhhccccCcEEecCCCcccccc-chhhhccCcceEEeecCCccccccCccCCCCCCCCccce
Q 005896 158 LLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLSN 235 (671)
Q Consensus 158 ~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~~ 235 (671)
+|++|+|++|.++.+| ..++.+++|++|+|++| .+..+ |..+..+++|++|+|++|.+.+..|..+..+++|+.|++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 9999999999999885 45899999999999999 66655 667899999999999999954444777999999999988
Q ss_pred eEecCC
Q 005896 236 FIVGKG 241 (671)
Q Consensus 236 ~~~~~~ 241 (671)
..+...
T Consensus 161 ~~N~l~ 166 (220)
T 2v70_A 161 LANPFN 166 (220)
T ss_dssp CSCCEE
T ss_pred cCcCCc
Confidence 766544
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.2e-13 Score=153.52 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=102.8
Q ss_pred CCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCccc
Q 005896 74 FERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPF 153 (671)
Q Consensus 74 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~ 153 (671)
...++++++..+.... .........+|+.+.+.+.+.. .+. ..++++.|..++.|++|+|++|.+..+|..+
T Consensus 172 ~~~~~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~~----~n~--~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 243 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE--ANQALLQHKKLSQYSIDEDDDI----ENR--MVMPKDSKYDDQLWHALDLSNLQIFNISANI 243 (727)
T ss_dssp ----------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG
T ss_pred CCccceEEeeCCCCCc--chhhHhhcCccCcccccCcccc----ccc--eecChhhhccCCCCcEEECCCCCCCCCChhh
Confidence 3457778876665443 1233334445555544441110 011 3366788999999999999999999999888
Q ss_pred CCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCCCCCCCcc
Q 005896 154 EDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTL 233 (671)
Q Consensus 154 ~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 233 (671)
..+++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|+.|++|++|+|++|. ++.+|.+++++++|+.|
T Consensus 244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCE
T ss_pred cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEE
Confidence 8999999999999999999999999999999999999 788999999999999999999998 78999999999999999
Q ss_pred ceeEecCCc
Q 005896 234 SNFIVGKGE 242 (671)
Q Consensus 234 ~~~~~~~~~ 242 (671)
++..+....
T Consensus 322 ~L~~N~l~~ 330 (727)
T 4b8c_D 322 GVEGNPLEK 330 (727)
T ss_dssp ECTTSCCCS
T ss_pred eCCCCccCC
Confidence 987776543
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.2e-13 Score=125.29 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=109.9
Q ss_pred hhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccc
Q 005896 94 EVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP 173 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp 173 (671)
+.+.++++|+.|.+.+ |.+. .+ +......++|++|++++|.++.+ ..+..+++|++|+|++|.|+.+|
T Consensus 13 ~~~~~~~~L~~L~l~~---------n~l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRG---------YKIP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp CEEECTTSCEEEECTT---------SCCC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC
T ss_pred HhcCCcCCceEEEeeC---------CCCc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC
Confidence 4566788999999998 4432 23 33444445999999999999888 68899999999999999999997
Q ss_pred hhh-hccccCcEEecCCCccccccch--hhhccCcceEEeecCCccccccCcc----CCCCCCCCccceeEec
Q 005896 174 ESK-CKLLNLEILILRNCSRLIKLPQ--EMRNLINLRHLDIRGAKLLKEMPFG----MKELNKLQTLSNFIVG 239 (671)
Q Consensus 174 ~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~L~~~~~~~~~p~~----l~~l~~L~~L~~~~~~ 239 (671)
..+ +.+++|++|++++| .++.+|. .++.+++|++|++++|. +..+|.. +..+++|+.|++..+.
T Consensus 81 ~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 554 89999999999999 8888887 78999999999999999 6678875 8889999999876654
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=2.6e-13 Score=127.76 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=115.6
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCc-
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPI- 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~- 151 (671)
.+..++.+.+..+.+........|..+++|+.|.+.+ |.+ ..+++..|..+++|++|+|++|.+..+|.
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~---------N~i-~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN---------NKI-TDIEEGAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS---------SCC-CEECTTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC---------CcC-CEECHHHhCCCCCCCEEECCCCccCccCHh
Confidence 4567889999998776644445588999999999999 444 45667789999999999999999988874
Q ss_pred ccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCcccccc-chhhhccCcceEEeecCCcccc
Q 005896 152 PFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRGAKLLK 218 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~ 218 (671)
.|..+++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+ |..+..+++|++|++++|.+..
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 589999999999999999987 788999999999999999 67666 7789999999999999998543
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=1.2e-13 Score=124.41 Aligned_cols=138 Identities=25% Similarity=0.218 Sum_probs=115.9
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccc-cCc
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGE-LPI 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~ 151 (671)
.+..++.+.+..+.+.....+..+..+++|+.|.+.+ |.+.. + ..|..+++|++|++++|.+.. +|.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~---------n~l~~-~--~~~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN---------VGLIS-V--SNLPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEES---------SCCCC-C--SSCCCCSSCCEEEEESCCCCSCCCH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcC---------CCCCC-h--hhhccCCCCCEEECcCCcCchHHHH
Confidence 5678999999988765223345578899999999999 44322 2 678999999999999999977 677
Q ss_pred ccCCCCccceeecCCCcccccc--hhhhccccCcEEecCCCccccccch----hhhccCcceEEeecCCccccccCccC
Q 005896 152 PFEDLRLLRFLNLADTDIRSLP--ESKCKLLNLEILILRNCSRLIKLPQ----EMRNLINLRHLDIRGAKLLKEMPFGM 224 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~L~~~~~~~~~p~~l 224 (671)
.+..+++|++|++++|.++.+| ..++.+++|++|++++| .+..+|. .+..+++|++|++++|. ...+|.+.
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~ 166 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDSD 166 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSSS
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccccc
Confidence 7778999999999999999886 78999999999999999 8888876 68999999999999998 77777643
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=3.8e-13 Score=125.76 Aligned_cols=129 Identities=26% Similarity=0.351 Sum_probs=103.0
Q ss_pred cCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcc-cCCCCccceeecCCCcccccch-hh
Q 005896 99 IGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIP-FEDLRLLRFLNLADTDIRSLPE-SK 176 (671)
Q Consensus 99 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~L~~n~i~~lp~-~i 176 (671)
.++|+.|.+.+ +.+ ..+++..|..+++|++|++++|.+..+|.. |..+++|++|++++|.++.+|. .+
T Consensus 27 ~~~l~~L~l~~---------n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 27 PAQTTYLDLET---------NSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp CTTCSEEECCS---------SCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCcEEEcCC---------Ccc-CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 45888998888 443 356667788899999999999998888754 6889999999999999998864 46
Q ss_pred hccccCcEEecCCCccccccchh-hhccCcceEEeecCCccccccCcc-CCCCCCCCccceeEec
Q 005896 177 CKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLSNFIVG 239 (671)
Q Consensus 177 ~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~~~~~~ 239 (671)
+.+++|++|++++| .+..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++..+.
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 88999999999998 77777665 6889999999999998 5566655 7888889888876553
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=139.76 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=56.7
Q ss_pred eEEEecCCCccccCcccCCCCccceeecCCCcccccch-hhh-ccccCcEEecCCCccccccch-hhhccCcceEEeecC
Q 005896 137 RMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPE-SKC-KLLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDIRG 213 (671)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~i~-~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~ 213 (671)
++++++++.+..+|..+. ..+++|+|++|.|+.++. .+. .+++|++|+|++| .+..+|. .|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 456666666666665543 346667777766666643 344 6666777777666 5555543 466666677777766
Q ss_pred CccccccCcc-CCCCCCCCcccee
Q 005896 214 AKLLKEMPFG-MKELNKLQTLSNF 236 (671)
Q Consensus 214 ~~~~~~~p~~-l~~l~~L~~L~~~ 236 (671)
|. +..+|.. +..+++|+.|++.
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECC
T ss_pred Cc-CCcCCHHHhCCCcCCCEEECC
Confidence 66 4444432 5555555555543
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=2.1e-15 Score=162.33 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=55.4
Q ss_pred CCCCCCCcEEEEeccCCccCCCCCCCCCCCCccEEEEeCCCCCCCC-C-CCCCCCCccEEEEeCCCCceeccccccCCCc
Q 005896 312 LQPHERIKELAIKHYGGARFPPWIGQHSFSEMKVLKLENCDNCAAL-P-SLGLMSSLKILAVKGLKKLKSIESEVYGEGF 389 (671)
Q Consensus 312 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~l~~~~~~~~~-~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 389 (671)
+..+++|+.|++++|.+..+| .+. .+++|+.|++++|.+.+.. | .++.+++|+.|++++|+.....+ ... ..
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~lp-~l~--~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~--~l 555 (567)
T 1dce_A 482 LAALRCLEVLQASDNALENVD-GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQE--RL 555 (567)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-GGT--TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTT--HH
T ss_pred hhcCCCCCEEECCCCCCCCCc-ccC--CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHH--HH
Confidence 334566667777777666676 455 5888888888888887764 5 78888889999998886433322 111 11
Q ss_pred cCCCCCcceeec
Q 005896 390 SMPFPSLEILSF 401 (671)
Q Consensus 390 ~~~~~~L~~L~l 401 (671)
...+|+|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 122788887753
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=3.3e-13 Score=137.78 Aligned_cols=112 Identities=21% Similarity=0.318 Sum_probs=53.6
Q ss_pred hhhhhc-CCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCcccccc-chhhh
Q 005896 126 LSDLLP-MFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKL-PQEMR 201 (671)
Q Consensus 126 ~~~~~~-~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~ 201 (671)
++..|. .+++|++|+|++|.+..++ ..|..+++|++|+|++|.++.+| ..|..+++|++|+|++| .+..+ |..|.
T Consensus 55 ~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~ 133 (361)
T 2xot_A 55 RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFE 133 (361)
T ss_dssp CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhC
Confidence 333343 5555555555555554444 33455555555555555555443 23455555555555555 33333 33445
Q ss_pred ccCcceEEeecCCccccccCccC----CCCCCCCccceeEec
Q 005896 202 NLINLRHLDIRGAKLLKEMPFGM----KELNKLQTLSNFIVG 239 (671)
Q Consensus 202 ~l~~L~~L~L~~~~~~~~~p~~l----~~l~~L~~L~~~~~~ 239 (671)
.+++|++|+|++|. +..+|..+ ..+++|+.|++..+.
T Consensus 134 ~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 134 DMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp TCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 55555555555555 44444432 345555555544443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=4.6e-13 Score=117.75 Aligned_cols=128 Identities=25% Similarity=0.281 Sum_probs=107.1
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccc-cCc
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGE-LPI 151 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~ 151 (671)
.+..++++.+..+.+.....+..+..+++|+.|.+.+ |.+.. + ..|..+++|++|++++|.+.. +|.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~---------n~l~~-~--~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN---------VGLTS-I--ANLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTT---------SCCCC-C--TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcC---------CCCCC-c--hhhhcCCCCCEEECCCCcccchHHH
Confidence 4578899999888765223455678899999999999 44322 2 678999999999999999987 777
Q ss_pred ccCCCCccceeecCCCcccccc--hhhhccccCcEEecCCCccccccch----hhhccCcceEEeecC
Q 005896 152 PFEDLRLLRFLNLADTDIRSLP--ESKCKLLNLEILILRNCSRLIKLPQ----EMRNLINLRHLDIRG 213 (671)
Q Consensus 152 ~~~~l~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~L~~ 213 (671)
.+..+++|++|++++|.++.+| ..++.+++|++|++++| .+..+|. .++.+++|++|++++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 7778999999999999999875 88999999999999999 7887776 689999999999864
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=4.6e-13 Score=121.38 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=108.9
Q ss_pred hhcCCCceeEEEecCCCccccCcccCCCC-ccceeecCCCcccccchhhhccccCcEEecCCCccccccchhh-hccCcc
Q 005896 129 LLPMFKMLRMLSLQGYRIGELPIPFEDLR-LLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEM-RNLINL 206 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L 206 (671)
.|..+++|+.|++++|.+..+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++| .+..+|..+ +.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 36778999999999999998864 54555 999999999999988 67999999999999999 888888665 899999
Q ss_pred eEEeecCCccccccCc--cCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCC
Q 005896 207 RHLDIRGAKLLKEMPF--GMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHN 284 (671)
Q Consensus 207 ~~L~L~~~~~~~~~p~--~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~ 284 (671)
++|++++|. ++.+|. .+..+++|+.|++..+.....+. .....+..+++
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~----------------------------~~~~~~~~l~~ 141 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKH----------------------------YRLYVIYKVPQ 141 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTT----------------------------HHHHHHHHCTT
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHh----------------------------HHHHHHHHCCc
Confidence 999999999 688887 68899999999876665432211 00112556778
Q ss_pred CCceEEEEecC
Q 005896 285 LEALTLEWGSQ 295 (671)
Q Consensus 285 L~~L~l~~~~~ 295 (671)
|+.|+++.+..
T Consensus 142 L~~Ld~~~n~~ 152 (176)
T 1a9n_A 142 VRVLDFQKVKL 152 (176)
T ss_dssp CSEETTEECCH
T ss_pred cceeCCCcCCH
Confidence 88888887765
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=1.4e-12 Score=119.87 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=65.8
Q ss_pred ceeEEEecCCCccccCcc--cCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccch-hhhccCcceEEe
Q 005896 135 MLRMLSLQGYRIGELPIP--FEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQ-EMRNLINLRHLD 210 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~--~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~ 210 (671)
.|++|++++|.++.++.. |..+++|++|+|++|.|+.+ |..++.+++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 666666776666666532 56666677777777766655 556666677777777666 4544443 356666777777
Q ss_pred ecCCccccccCccCCCCCCCCccceeEecC
Q 005896 211 IRGAKLLKEMPFGMKELNKLQTLSNFIVGK 240 (671)
Q Consensus 211 L~~~~~~~~~p~~l~~l~~L~~L~~~~~~~ 240 (671)
+++|.+.+..|..+..+++|++|++..+..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 776664444455566666666666554443
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1.3e-13 Score=153.25 Aligned_cols=122 Identities=24% Similarity=0.321 Sum_probs=104.1
Q ss_pred hhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCccccc
Q 005896 93 FEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL 172 (671)
Q Consensus 93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l 172 (671)
+..+..+++|+.|.+.+ |.+ ..++...| .+++|++|+|++|.+..+|..|+.+++|++|+|++|.|+.+
T Consensus 217 ~~~~~~l~~L~~L~Ls~---------n~l-~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSN---------LQI-FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp -----CCCCCCEEECTT---------SCC-SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred hhhhccCCCCcEEECCC---------CCC-CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc
Confidence 56678899999999999 444 34555554 89999999999999999999999999999999999999999
Q ss_pred chhhhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCccCCC
Q 005896 173 PESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFGMKE 226 (671)
Q Consensus 173 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~l~~ 226 (671)
|..|+.|++|++|+|++| .++.+|..|+.+++|++|+|++|.+.+.+|..+..
T Consensus 286 p~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999999999999999999 88999999999999999999999976666655543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=3.4e-12 Score=117.28 Aligned_cols=103 Identities=25% Similarity=0.400 Sum_probs=67.9
Q ss_pred CceeEEEecCCCccccCcccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCccccccch-hhhccCcceEEee
Q 005896 134 KMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDI 211 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L 211 (671)
++|++|++++|.++.+|..|..+++|++|+|++|.|+.++ ..|..+++|++|+|++| .+..+|. .|..+++|++|+|
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 4677777777777777766777777777777777777663 45677777777777776 5555543 4667777777777
Q ss_pred cCCccccccCcc-CCCCCCCCccceeEe
Q 005896 212 RGAKLLKEMPFG-MKELNKLQTLSNFIV 238 (671)
Q Consensus 212 ~~~~~~~~~p~~-l~~l~~L~~L~~~~~ 238 (671)
++|. +..+|.+ +..+++|+.|++..+
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 7776 4555554 566666666655443
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=2.6e-12 Score=118.07 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=104.1
Q ss_pred eEEEecCCCccccCcccCCCCccceeecCCCcccccchh--hhccccCcEEecCCCcccccc-chhhhccCcceEEeecC
Q 005896 137 RMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPES--KCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRG 213 (671)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~ 213 (671)
++++++++.++.+|..+.. +|++|++++|.|+.++.. ++.+++|++|+|++| .+..+ |..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 7899999999999987754 999999999999988653 899999999999999 66655 77899999999999999
Q ss_pred CccccccCccCCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEEe
Q 005896 214 AKLLKEMPFGMKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEWG 293 (671)
Q Consensus 214 ~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 293 (671)
|.+.+..|..+..+++|++|++..+...... +..+..+++|+.|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------------------------~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVM-------------------------------PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEEC-------------------------------TTSSTTCTTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeC-------------------------------HHHhhcCCCCCEEEeCCC
Confidence 9944444445899999999997666543321 234667788999999888
Q ss_pred cCCCC
Q 005896 294 SQSDS 298 (671)
Q Consensus 294 ~~~~~ 298 (671)
.+...
T Consensus 137 ~l~c~ 141 (192)
T 1w8a_A 137 PFNCN 141 (192)
T ss_dssp CBCCS
T ss_pred CccCc
Confidence 87544
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.4e-12 Score=117.27 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=97.9
Q ss_pred EEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCC
Q 005896 79 HSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLR 157 (671)
Q Consensus 79 ~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~ 157 (671)
.+.+..+.+..+ +..+ .++|+.|.+.+ |.+ ..++ ..|..+++|++|+|++|.++.++ ..|..++
T Consensus 14 ~l~~~~~~l~~i--p~~~--~~~l~~L~L~~---------n~i-~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 14 VVRCSNKGLKVL--PKGI--PRDVTELYLDG---------NQF-TLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78 (193)
T ss_dssp EEECTTSCCSSC--CSCC--CTTCCEEECCS---------SCC-CSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred EEEcCCCCCCcC--CCCC--CCCCCEEECCC---------CcC-chhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCC
Confidence 455555544332 2222 36899999998 444 2343 67899999999999999998887 5689999
Q ss_pred ccceeecCCCcccccc-hhhhccccCcEEecCCCccccccchh-hhccCcceEEeecCCcc
Q 005896 158 LLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRGAKL 216 (671)
Q Consensus 158 ~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~~ 216 (671)
+|++|+|++|.|+.+| ..+..+++|++|+|++| .+..+|.. +..+++|++|++++|.+
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999999999885 57999999999999999 78888874 78899999999999984
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=3.6e-12 Score=137.18 Aligned_cols=107 Identities=22% Similarity=0.223 Sum_probs=96.3
Q ss_pred ceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceEEeecCC
Q 005896 135 MLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGA 214 (671)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 214 (671)
.|++|+|++|.++.+|. |+.+++|++|+|++|.|+.+|..++.+++|++|+|++| .+..+| .++.+++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 58999999999999987 99999999999999999999999999999999999999 888898 6999999999999999
Q ss_pred cccccc--CccCCCCCCCCccceeEecCCcccc
Q 005896 215 KLLKEM--PFGMKELNKLQTLSNFIVGKGECAS 245 (671)
Q Consensus 215 ~~~~~~--p~~l~~l~~L~~L~~~~~~~~~~~~ 245 (671)
. +..+ |..++.+++|+.|++..+.....+.
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9 5555 8889999999999998887665443
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=3.1e-14 Score=131.94 Aligned_cols=107 Identities=22% Similarity=0.270 Sum_probs=77.5
Q ss_pred hhcCCCceeEEEecCCCccccCcccCCCCccceeecCCCcccccchhhhccccCcEEecCCCccccccchhhhccCcceE
Q 005896 129 LLPMFKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQEMRNLINLRH 208 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~ 208 (671)
.|..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+| .++.+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5677777777777777777776 677777777777777777777777777777777777777 666666 4777777777
Q ss_pred EeecCCccccccCc--cCCCCCCCCccceeEec
Q 005896 209 LDIRGAKLLKEMPF--GMKELNKLQTLSNFIVG 239 (671)
Q Consensus 209 L~L~~~~~~~~~p~--~l~~l~~L~~L~~~~~~ 239 (671)
|++++|. +..+|. .+..+++|++|++..+.
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 7777777 444443 46777777777765443
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=1.3e-13 Score=127.79 Aligned_cols=145 Identities=20% Similarity=0.188 Sum_probs=115.4
Q ss_pred ceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccCcccCC
Q 005896 76 RVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELPIPFED 155 (671)
Q Consensus 76 ~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~~~~ 155 (671)
.++...+..........+..+..+++|+.|.+.+ |.+.. ++ .+..+++|++|++++|.+..+|..+..
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~---------n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALST---------NNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE---------EEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCC---------CCCcc-cc--ccccCCCCCEEECCCCCcccccchhhc
Confidence 3444455433111122334788999999999999 44322 33 788999999999999999999988888
Q ss_pred CCccceeecCCCcccccchhhhccccCcEEecCCCccccccch--hhhccCcceEEeecCCccccccCcc----------
Q 005896 156 LRLLRFLNLADTDIRSLPESKCKLLNLEILILRNCSRLIKLPQ--EMRNLINLRHLDIRGAKLLKEMPFG---------- 223 (671)
Q Consensus 156 l~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~L~~~~~~~~~p~~---------- 223 (671)
+++|++|++++|.++.+| .++.+++|++|++++| .+..+|. .+..+++|++|++++|.+.+..|..
T Consensus 92 ~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 899999999999999987 6999999999999999 7887765 6899999999999999965555542
Q ss_pred CCCCCCCCccc
Q 005896 224 MKELNKLQTLS 234 (671)
Q Consensus 224 l~~l~~L~~L~ 234 (671)
+..+++|+.|+
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 77888888887
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=6.9e-11 Score=118.88 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=70.6
Q ss_pred ccCCccEEecccccccCCCCCcccchhhhhhhhcC-CCceeEEEecCCCccccCcccCCCCccceeecCCCcccccc-hh
Q 005896 98 EIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPM-FKMLRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLP-ES 175 (671)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp-~~ 175 (671)
...+++.|.+.+ + +..... ..+.. +++|++|||++|.+..+...-+.++.++++.+..+ .+| ..
T Consensus 23 ~~~~l~~L~l~g---------~-i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTG---------K-LNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEE---------E-ECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTT
T ss_pred hhCceeEEEEec---------c-ccHHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHH
Confidence 356788888877 2 212222 23333 78899999999988722211123333555555555 332 34
Q ss_pred hhc--------cccCcEEecCCCccccccch-hhhccCcceEEeecCCccccccCcc-CCCCCCCCccc
Q 005896 176 KCK--------LLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLS 234 (671)
Q Consensus 176 i~~--------L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~ 234 (671)
|.+ +++|+.|+|.+ .+..+++ .|..+++|+.|++.+|. +..++.. |..+.++..+.
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIP 154 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEEC
T ss_pred hcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEec
Confidence 555 78888888877 4555654 46778888888888777 4455544 65555555443
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=1.6e-11 Score=110.57 Aligned_cols=101 Identities=24% Similarity=0.370 Sum_probs=64.2
Q ss_pred eEEEecCCCccccCcccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccchh-hhccCcceEEeecCC
Q 005896 137 RMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRGA 214 (671)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~ 214 (671)
+.++++++.++.+|..+. ++|++|+|++|.|+.+ |..++.+++|++|+|++| .+..+|.. +..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 566666666666666553 6666777777766655 455666677777777766 56666654 356667777777666
Q ss_pred ccccccCcc-CCCCCCCCccceeEecCC
Q 005896 215 KLLKEMPFG-MKELNKLQTLSNFIVGKG 241 (671)
Q Consensus 215 ~~~~~~p~~-l~~l~~L~~L~~~~~~~~ 241 (671)
. +..+|.+ +..+++|+.|++..+...
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 6 4455554 666666666666555443
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=3.9e-11 Score=108.71 Aligned_cols=103 Identities=31% Similarity=0.455 Sum_probs=49.7
Q ss_pred CceeEEEecCCCccccCc-ccCCCCccceeecCCCcccccch-hhhccccCcEEecCCCccccccchh-hhccCcceEEe
Q 005896 134 KMLRMLSLQGYRIGELPI-PFEDLRLLRFLNLADTDIRSLPE-SKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLD 210 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 210 (671)
++|+.|++++|.++.+|. .|..+++|++|++++|.++.+|. .++.+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 345555555555544442 23455555555555555554432 2345555555555555 44444432 34555555555
Q ss_pred ecCCccccccCcc-CCCCCCCCccceeEe
Q 005896 211 IRGAKLLKEMPFG-MKELNKLQTLSNFIV 238 (671)
Q Consensus 211 L~~~~~~~~~p~~-l~~l~~L~~L~~~~~ 238 (671)
+++|. +..+|.. +..+++|+.|++..+
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 55554 3344433 344555555544433
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=5.8e-11 Score=107.57 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=104.1
Q ss_pred eeEEEecCCCccccCcccCCCCccceeecCCCcccccch-hhhccccCcEEecCCCccccccchh-hhccCcceEEeecC
Q 005896 136 LRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSLPE-SKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRG 213 (671)
Q Consensus 136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~ 213 (671)
.+.++++++++..+|..+. ++|++|++++|.++.+|. .++.+++|++|++++| .+..+|.. ++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 4788999999999986653 799999999999998864 5789999999999999 78877765 68999999999999
Q ss_pred CccccccCcc-CCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEEEE
Q 005896 214 AKLLKEMPFG-MKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTLEW 292 (671)
Q Consensus 214 ~~~~~~~p~~-l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 292 (671)
|. +..+|.. +..+++|+.|++..+.....+. ..+..+++|+.|++++
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-------------------------------~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQLKSVPD-------------------------------GIFDRLTSLQKIWLHT 133 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------------------------------TTTTTCTTCCEEECCS
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCcceEeCH-------------------------------HHhcCCcccCEEEecC
Confidence 99 5666655 7899999999876655432221 2356678999999999
Q ss_pred ecCCCCC
Q 005896 293 GSQSDSP 299 (671)
Q Consensus 293 ~~~~~~~ 299 (671)
|.+....
T Consensus 134 N~~~~~~ 140 (177)
T 2o6r_A 134 NPWDCSC 140 (177)
T ss_dssp SCBCCCH
T ss_pred CCeeccC
Confidence 9875443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=3.7e-11 Score=107.79 Aligned_cols=101 Identities=25% Similarity=0.319 Sum_probs=68.3
Q ss_pred eeEEEecCCCccccCcccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccchh-hhccCcceEEeecC
Q 005896 136 LRMLSLQGYRIGELPIPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLDIRG 213 (671)
Q Consensus 136 L~~L~L~~~~l~~lp~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~ 213 (671)
.++++++++.++.+|..+. ++|++|+|++|.|+.+ |..++.+++|++|+|++| .+..+|.. +..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 3567777777777776553 6677777777777766 556777777777777777 66666654 46777777777777
Q ss_pred CccccccCcc-CCCCCCCCccceeEecC
Q 005896 214 AKLLKEMPFG-MKELNKLQTLSNFIVGK 240 (671)
Q Consensus 214 ~~~~~~~p~~-l~~l~~L~~L~~~~~~~ 240 (671)
|. +..+|.+ +..+++|+.|++..+..
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 77 5555554 66777777777665544
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=1.1e-10 Score=117.26 Aligned_cols=245 Identities=12% Similarity=0.115 Sum_probs=139.2
Q ss_pred CCCccEEEEeCCCCceeccccccCCCccCCCCCcceeeccCcccccccccccCCCCccCCCCccceeeEecCCCCccCCC
Q 005896 363 MSSLKILAVKGLKKLKSIESEVYGEGFSMPFPSLEILSFESLPEWQHWNTNIKGNEPVEIFPRLQELSIAECPQLSGELP 442 (671)
Q Consensus 363 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp 442 (671)
+++++.|.+++.-....+. .+. ..+++|+.|+|+++.... + ....+. ++.++.+.+.. +.+....-
T Consensus 24 ~~~l~~L~l~g~i~~~~~~-~l~-----~~l~~L~~LdLs~n~i~~-~-~~~~~~-----~~~~~~~~~~~-~~I~~~aF 89 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFR-HLR-----DEFPSLKVLDISNAEIKM-Y-SGKAGT-----YPNGKFYIYMA-NFVPAYAF 89 (329)
T ss_dssp HHHCSEEEEEEEECHHHHH-HHH-----HSCTTCCEEEEEEEEECC-E-EESSSS-----SGGGCCEEECT-TEECTTTT
T ss_pred hCceeEEEEeccccHHHHH-HHH-----HhhccCeEEecCcceeEE-e-cCcccc-----ccccccccccc-cccCHHHh
Confidence 5567777777642111111 011 117889999998876431 1 111222 55544454444 22221111
Q ss_pred CC--------CCCccEEEEeccCC-c-CccCCCCCCcceEEeccCCCcc----cccCCCCCccCcccC----CCCCCCCe
Q 005896 443 GL--------LPSLETLVVRKCGK-L-VVPLSSYPMLCRLEVDECKELV----DICGCDKLEALPNDM----HKLNSLRD 504 (671)
Q Consensus 443 ~~--------l~~L~~L~l~~~~~-l-~~~~~~~~~L~~L~l~~~~~~~----~i~~~~~l~~l~~~~----~~l~~L~~ 504 (671)
.. +++|++|++.+.-. + ...|..+++|+.+++.+|.... .+.+|.++..+|... .....+..
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred cccccccccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc
Confidence 34 78889988887211 1 4568889999999998887321 222333333333211 00111111
Q ss_pred eEeecCCCCc---------ccCC-----------------C------------CCCCCcceEEEccCcCcccccccccCC
Q 005896 505 LGIQLCPNLV---------SFPE-----------------E------------GFPTNLTTLVIGNFKLYKTLVQWGLHR 546 (671)
Q Consensus 505 L~l~~~~~l~---------~~~~-----------------~------------~~~~~L~~L~l~~~~~l~~~~~~~~~~ 546 (671)
....+|..++ .++. . ..+++|+.+++++|+ ++.++...|.+
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~ 248 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQ 248 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTT
T ss_pred cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhC
Confidence 1122222221 0000 0 015788888886543 77788778888
Q ss_pred CCCcCeEEecccCCCcccCCcccccccCCCCcC-eEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCCCC--C
Q 005896 547 LTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLT-HLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEVGL--P 623 (671)
Q Consensus 547 l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~ 623 (671)
+++|+.+++.+ + ++.|+...+ ..+++|+ .+++.+ +++.|+...|.+|++|+.|++.++ .++.++...+ +
T Consensus 249 ~~~L~~l~l~~--n-i~~I~~~aF--~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 249 KKYLLKIKLPH--N-LKTIGQRVF--SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNG 320 (329)
T ss_dssp CTTCCEEECCT--T-CCEECTTTT--TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTT
T ss_pred CCCCCEEECCc--c-cceehHHHh--hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCC
Confidence 88888888876 3 777777445 6777888 888886 688887778888888888888777 7888776443 4
Q ss_pred CCccEEE
Q 005896 624 SSLLELH 630 (671)
Q Consensus 624 ~~L~~L~ 630 (671)
++|+.|+
T Consensus 321 ~~L~~ly 327 (329)
T 3sb4_A 321 VPSKLIY 327 (329)
T ss_dssp CCCCEEE
T ss_pred cchhhhc
Confidence 5666654
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=8.9e-11 Score=105.66 Aligned_cols=88 Identities=24% Similarity=0.266 Sum_probs=76.1
Q ss_pred CceeEEEecCCCcccc-CcccCCCCccceeecCCCcccccchh-hhccccCcEEecCCCccccccchh-hhccCcceEEe
Q 005896 134 KMLRMLSLQGYRIGEL-PIPFEDLRLLRFLNLADTDIRSLPES-KCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHLD 210 (671)
Q Consensus 134 ~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 210 (671)
++|++|+|++|.+..+ |..|..+++|++|+|++|.|+.+|.. +..+++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 7899999999999887 46789999999999999999999765 689999999999999 88888876 88999999999
Q ss_pred ecCCccccccCcc
Q 005896 211 IRGAKLLKEMPFG 223 (671)
Q Consensus 211 L~~~~~~~~~p~~ 223 (671)
+++|. +...+..
T Consensus 112 L~~N~-~~c~~~~ 123 (174)
T 2r9u_A 112 LYNNP-WDCECRD 123 (174)
T ss_dssp CCSSC-BCTTBGG
T ss_pred eCCCC-ccccccc
Confidence 99998 4444443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.10 E-value=1.7e-08 Score=103.55 Aligned_cols=204 Identities=11% Similarity=0.192 Sum_probs=142.5
Q ss_pred CCccceeeEecCCCCccCCCC---CCCCccEEEEeccCC--cCccCCCCCCcceEEeccCCCcccccCCCCCccCcccCC
Q 005896 423 FPRLQELSIAECPQLSGELPG---LLPSLETLVVRKCGK--LVVPLSSYPMLCRLEVDECKELVDICGCDKLEALPNDMH 497 (671)
Q Consensus 423 ~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~i~~~~~l~~l~~~~~ 497 (671)
+++|+.+++.+ ++++ .+|. ...+|+.+.+..+-. -...|..+++|+.+++..+ ++.++....
T Consensus 179 c~~L~~l~l~~-n~l~-~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-----------l~~I~~~aF 245 (401)
T 4fdw_A 179 CYNLKKADLSK-TKIT-KLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-----------VSTIGQEAF 245 (401)
T ss_dssp CTTCCEEECTT-SCCS-EECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-----------CCEECTTTT
T ss_pred cccCCeeecCC-Ccce-EechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-----------ccCcccccc
Confidence 66777777765 4555 4442 135677777654311 1356777888888888764 255555443
Q ss_pred CCCCCCeeEeecCCCCcccCCCC--CCCCcceEEEccCcC----cccccccccCCCCCcCeEEecccCCCcccCCccccc
Q 005896 498 KLNSLRDLGIQLCPNLVSFPEEG--FPTNLTTLVIGNFKL----YKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIG 571 (671)
Q Consensus 498 ~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~----l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~ 571 (671)
.-.+|+.+.+.++ ++.++... .+++|+.+++.++.. ...++...|.++++|+.+.+.+ .++.|+...+
T Consensus 246 ~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~~aF- 319 (401)
T 4fdw_A 246 RESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQGLL- 319 (401)
T ss_dssp TTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECTTTT-
T ss_pred ccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhhhhh-
Confidence 3378999999654 67776653 468899999976543 2357778899999999999975 4788877455
Q ss_pred ccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCCCCCcCCCC---CCCCCccEEEEeCChhhHHHHhhCCCCC
Q 005896 572 MTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCPNLTSFPEV---GLPSSLLELHIYGCPNLKKACKRDQGKE 648 (671)
Q Consensus 572 ~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 648 (671)
..+++|+.+.+.. +++.|+...|.++ +|+.+++.+| .+..++.. +.+.+++.|.|-.- -.+.++.+. .
T Consensus 320 -~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~--~~~~y~~a~--~ 390 (401)
T 4fdw_A 320 -GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE--SVEKYKNAN--G 390 (401)
T ss_dssp -TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG--GHHHHHHST--T
T ss_pred -cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH--HHHHhhhcc--c
Confidence 6789999999964 5899987889999 9999999999 66666653 34568899999763 344455433 3
Q ss_pred CCceec
Q 005896 649 WPKIAH 654 (671)
Q Consensus 649 ~~~~~~ 654 (671)
|...+.
T Consensus 391 W~~f~~ 396 (401)
T 4fdw_A 391 WRDFTN 396 (401)
T ss_dssp GGGGGG
T ss_pred hhhhhh
Confidence 765543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=2.5e-10 Score=102.38 Aligned_cols=83 Identities=28% Similarity=0.359 Sum_probs=72.9
Q ss_pred CCceeEEEecCCCcccc-CcccCCCCccceeecCCCcccccchh-hhccccCcEEecCCCccccccchh-hhccCcceEE
Q 005896 133 FKMLRMLSLQGYRIGEL-PIPFEDLRLLRFLNLADTDIRSLPES-KCKLLNLEILILRNCSRLIKLPQE-MRNLINLRHL 209 (671)
Q Consensus 133 l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L 209 (671)
.+.|++|+|++|.+..+ |..|..+++|++|+|++|.|+.+|.. +..+++|++|+|++| .+..+|.. +..+++|++|
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 37899999999999888 46789999999999999999988654 689999999999999 78888764 8899999999
Q ss_pred eecCCcc
Q 005896 210 DIRGAKL 216 (671)
Q Consensus 210 ~L~~~~~ 216 (671)
+|++|.+
T Consensus 108 ~L~~N~~ 114 (170)
T 3g39_A 108 WLLNNPW 114 (170)
T ss_dssp ECCSSCB
T ss_pred EeCCCCC
Confidence 9999983
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=4.8e-09 Score=107.75 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=83.8
Q ss_pred ccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCccccc-chh
Q 005896 98 EIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL-PES 175 (671)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~ 175 (671)
.+..++.+.+.. + ...+...+|.++ +|+.+.+..+ +..++ .+|.+ .+|+.+.+.. .++.+ +..
T Consensus 111 ~~~~l~~i~ip~---------~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~a 175 (401)
T 4fdw_A 111 ILKGYNEIILPN---------S--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDI 175 (401)
T ss_dssp ECSSCSEEECCT---------T--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSST
T ss_pred ecCCccEEEECC---------c--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHH
Confidence 446777777665 1 255666777775 6888888765 66665 45655 3688888875 67777 466
Q ss_pred hhccccCcEEecCCCccccccchhhhccCcceEEeecCCccccccCcc-CCCCCCCCccce
Q 005896 176 KCKLLNLEILILRNCSRLIKLPQEMRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLSN 235 (671)
Q Consensus 176 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~~ 235 (671)
|.+|.+|+.+++..| .+..+|.......+|+.+.+..+ +..++.. |.++++|+.+.+
T Consensus 176 F~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 176 FYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred hhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 888888888888877 77777776544678888888744 5566654 777888887764
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.02 E-value=5.3e-08 Score=100.37 Aligned_cols=80 Identities=19% Similarity=0.141 Sum_probs=40.6
Q ss_pred CCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCC
Q 005896 522 PTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLT 601 (671)
Q Consensus 522 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~ 601 (671)
+.+|+.+.+.+ .++.+...+|.++++|+.+++.. .++.|+...+ ..+++|+.+++.. +++.|+...|.+++
T Consensus 296 ~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~---~v~~I~~~aF--~~c~~L~~i~lp~--~l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 296 CSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY---LVEEIGKRSF--RGCTSLSNINFPL--SLRKIGANAFQGCI 366 (394)
T ss_dssp CTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT---TCCEECTTTT--TTCTTCCEECCCT--TCCEECTTTBTTCT
T ss_pred ccccccccccc--ccceechhhhcCCCCCCEEEeCC---cccEEhHHhc--cCCCCCCEEEECc--cccEehHHHhhCCC
Confidence 34555555532 24445555555666666665542 2444444233 3445555555543 25555545555556
Q ss_pred ccCeEeecC
Q 005896 602 SLQYLRIGN 610 (671)
Q Consensus 602 ~L~~L~l~~ 610 (671)
+|+.+++..
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 666555543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=6.3e-08 Score=99.79 Aligned_cols=124 Identities=12% Similarity=0.114 Sum_probs=78.8
Q ss_pred hhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCccccc
Q 005896 94 EVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL 172 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l 172 (671)
.+|.+|++|+++.+.. + ...+...+|.++++|+.+++..+ +..++ .+|.++..|+.+.+..+ ++.+
T Consensus 65 ~AF~~c~~L~~i~lp~---------~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i 131 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS---------T--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSI 131 (394)
T ss_dssp TTTTTCTTEEEEECCT---------T--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred HHhhCCCCceEEEeCC---------C--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeee
Confidence 5677888888888765 2 24566778888888888888654 66665 55777888887776644 4444
Q ss_pred -chhhhccccCcEEecCCCcccccc-chhhhccCcceEEeecCCccccccCcc-CCCCCCCCccce
Q 005896 173 -PESKCKLLNLEILILRNCSRLIKL-PQEMRNLINLRHLDIRGAKLLKEMPFG-MKELNKLQTLSN 235 (671)
Q Consensus 173 -p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~~ 235 (671)
...|.++..++....... ..+ ...|..+++|+.+.+.++. ..++.+ +..+.+|+.+.+
T Consensus 132 ~~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp CTTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCC
T ss_pred cceeeecccccccccCccc---cccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEc
Confidence 345555555444443332 222 2346778888888886543 345544 667777777654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=3.7e-09 Score=107.16 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=53.8
Q ss_pred EEecCC-CccccCcccCCCCccceeecCC-Ccccccc-hhhhccccCcEEecCCCccccccch-hhhccCcceEEeecCC
Q 005896 139 LSLQGY-RIGELPIPFEDLRLLRFLNLAD-TDIRSLP-ESKCKLLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDIRGA 214 (671)
Q Consensus 139 L~L~~~-~l~~lp~~~~~l~~L~~L~L~~-n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~ 214 (671)
++++++ ++..+|. +..+++|++|+|++ |.|+.+| ..|++|++|++|+|++| .+..+|. .|+.+++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 355555 5566665 66666666666664 6666554 44666666666666666 4444333 3566666666666666
Q ss_pred ccccccCccCCCCCCCCccceeEec
Q 005896 215 KLLKEMPFGMKELNKLQTLSNFIVG 239 (671)
Q Consensus 215 ~~~~~~p~~l~~l~~L~~L~~~~~~ 239 (671)
. +..+|.++.....|+.|++..+.
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred c-cceeCHHHcccCCceEEEeeCCC
Confidence 6 44555443222225555554443
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1e-08 Score=103.94 Aligned_cols=91 Identities=23% Similarity=0.234 Sum_probs=77.4
Q ss_pred hhhhhhhhcCCCceeEEEecC-CCccccC-cccCCCCccceeecCCCccccc-chhhhccccCcEEecCCCccccccchh
Q 005896 123 RSVLSDLLPMFKMLRMLSLQG-YRIGELP-IPFEDLRLLRFLNLADTDIRSL-PESKCKLLNLEILILRNCSRLIKLPQE 199 (671)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~L~~-~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~ 199 (671)
..+|. +..+++|+.|+|++ |.++.+| ..|..+++|++|+|++|.|+.+ |..|++|++|++|+|++| .+..+|..
T Consensus 22 ~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 98 (347)
T 2ifg_A 22 DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK 98 (347)
T ss_dssp TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence 34544 88899999999996 9998887 5689999999999999999987 457899999999999999 88888876
Q ss_pred hhccCcceEEeecCCcc
Q 005896 200 MRNLINLRHLDIRGAKL 216 (671)
Q Consensus 200 i~~l~~L~~L~L~~~~~ 216 (671)
+.....|+.|+|.+|.+
T Consensus 99 ~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPL 115 (347)
T ss_dssp TTCSCCCCEEECCSSCC
T ss_pred HcccCCceEEEeeCCCc
Confidence 55444599999999983
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=2.8e-09 Score=108.39 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=105.2
Q ss_pred cCCceeEEEeEeCCCCCccchhhhcc-----cCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCcc
Q 005896 73 RFERVRHSSYACGGRDGKNMFEVFNE-----IGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIG 147 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 147 (671)
....++.+.+..+.+... ....+.. .++|+.|.+.+ |.+........+..+++|+.|+|++|.++
T Consensus 70 ~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~---------n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLAS---------CQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp HHTTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTT---------CCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred HHhhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecC---------CCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 345677788877765432 1222222 36899999888 44544444555566778899999999885
Q ss_pred ccC-----ccc-CCCCccceeecCCCcccc-----cchhhhccccCcEEecCCCccccc-----cchhhhccCcceEEee
Q 005896 148 ELP-----IPF-EDLRLLRFLNLADTDIRS-----LPESKCKLLNLEILILRNCSRLIK-----LPQEMRNLINLRHLDI 211 (671)
Q Consensus 148 ~lp-----~~~-~~l~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L 211 (671)
... ..+ ...++|++|+|++|.|+. ++..+..+++|++|+|++| .++. ++..+...++|++|+|
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 432 222 346789999999998864 4555677888999999998 5543 3455677788999999
Q ss_pred cCCcccc----ccCccCCCCCCCCccceeEecCC
Q 005896 212 RGAKLLK----EMPFGMKELNKLQTLSNFIVGKG 241 (671)
Q Consensus 212 ~~~~~~~----~~p~~l~~l~~L~~L~~~~~~~~ 241 (671)
++|.+.. .++..+...++|++|++..+...
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 9988422 23334556678888887666543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.58 E-value=1.7e-06 Score=89.10 Aligned_cols=125 Identities=10% Similarity=0.119 Sum_probs=86.9
Q ss_pred hhhcccC-CccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCC---ccccC-cccCCCCccceeecCCCc
Q 005896 94 EVFNEIG-HLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYR---IGELP-IPFEDLRLLRFLNLADTD 168 (671)
Q Consensus 94 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~---l~~lp-~~~~~l~~L~~L~L~~n~ 168 (671)
.+|.+++ .|+++.+.. + ...+...+|.++++|+.+.+..+. +..+. .+|..+.+|+.+.+..+
T Consensus 57 ~aF~~~~~~L~sI~iP~---------s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPD---------T--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS- 124 (394)
T ss_dssp TTTTTCCSCCCEEEECT---------T--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred hhccCCCCcCEEEEECC---------C--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-
Confidence 5677774 588888866 2 256777889999999999988763 56665 56888888888887654
Q ss_pred ccccc-hhhhccccCcEEecCCCccccccch-hhhccCcceEEeecCCccccccCccCCCCCCCCccc
Q 005896 169 IRSLP-ESKCKLLNLEILILRNCSRLIKLPQ-EMRNLINLRHLDIRGAKLLKEMPFGMKELNKLQTLS 234 (671)
Q Consensus 169 i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 234 (671)
++.++ ..+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..+......-.+|+.+.
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ 188 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIH 188 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEE
T ss_pred cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEE
Confidence 66664 56788899999998754 444444 4678888888888654 344544422334555554
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=2.5e-08 Score=87.73 Aligned_cols=91 Identities=11% Similarity=0.114 Sum_probs=58.8
Q ss_pred CcceEEEccCcCcccccccccCCCCCcCeEEecccCCCcccCCccccccc--CCCCcCeEeccCCCCCccCCccCCCCCC
Q 005896 524 NLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMT--LPTSLTHLSFCGFQNLIFLSSMGFQNLT 601 (671)
Q Consensus 524 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~l~~l~ 601 (671)
.|+.||+++|. ++...-..+.++++|++|++++ |..+++-.-...... ..++|++|+|++|++++.-....+..++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~-C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCK-CHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEES-CTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCC-CCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 56666666665 4433223456788888888888 877765432111000 1246888888888888765444566788
Q ss_pred ccCeEeecCCCCCCc
Q 005896 602 SLQYLRIGNCPNLTS 616 (671)
Q Consensus 602 ~L~~L~l~~c~~l~~ 616 (671)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 888888888887775
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.51 E-value=1.4e-05 Score=82.16 Aligned_cols=88 Identities=10% Similarity=0.189 Sum_probs=57.6
Q ss_pred hhhhhhhhcCCC-ceeEEEecCCCccccC-cccCCCCccceeecCCCc---cccc-chhhhccccCcEEecCCCcccccc
Q 005896 123 RSVLSDLLPMFK-MLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTD---IRSL-PESKCKLLNLEILILRNCSRLIKL 196 (671)
Q Consensus 123 ~~~~~~~~~~l~-~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~---i~~l-p~~i~~L~~L~~L~L~~~~~l~~l 196 (671)
..+...+|..++ .|+.+.+..+ ++.+. .+|.++.+|+.+.+..+. ++.+ ..+|..+.+|+.+.+..+ +..+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--ccee
Confidence 345566787774 5888888754 66664 567888888888887653 5666 355777777777776553 4444
Q ss_pred ch-hhhccCcceEEeecC
Q 005896 197 PQ-EMRNLINLRHLDIRG 213 (671)
Q Consensus 197 p~-~i~~l~~L~~L~L~~ 213 (671)
+. .+..+.+|+.+.+..
T Consensus 129 ~~~aF~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPE 146 (394)
T ss_dssp CTTTTTTCTTCCEEECCT
T ss_pred hhhhhhhhcccccccccc
Confidence 43 356667777766643
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=7.2e-08 Score=97.91 Aligned_cols=132 Identities=16% Similarity=0.064 Sum_probs=98.0
Q ss_pred CceeEEEeEeCCCCCccchhhhcccCCccEEecccccccCCCCCcccchh---hhhhhh-cCCCceeEEEecCCCccc--
Q 005896 75 ERVRHSSYACGGRDGKNMFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRS---VLSDLL-PMFKMLRMLSLQGYRIGE-- 148 (671)
Q Consensus 75 ~~~~~lsl~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~~~~-~~l~~L~~L~L~~~~l~~-- 148 (671)
..++.+.+..+.+.......-...+++|+.|.+.+ |.+... .....+ ...+.|++|+|++|.++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~---------n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL---------NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS---------SCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC---------CCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence 57889999888665432222233567899999999 444332 222233 357899999999999854
Q ss_pred ---cCcccCCCCccceeecCCCcccc-----cchhhhccccCcEEecCCCccccc-----cchhhhccCcceEEeecCCc
Q 005896 149 ---LPIPFEDLRLLRFLNLADTDIRS-----LPESKCKLLNLEILILRNCSRLIK-----LPQEMRNLINLRHLDIRGAK 215 (671)
Q Consensus 149 ---lp~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L~~~~ 215 (671)
++..+..+++|++|+|++|.|+. ++..+...++|++|+|++| .++. ++..+...++|++|+|++|.
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 45556788999999999999983 3566788899999999999 6653 44456678999999999998
Q ss_pred c
Q 005896 216 L 216 (671)
Q Consensus 216 ~ 216 (671)
+
T Consensus 251 i 251 (372)
T 3un9_A 251 L 251 (372)
T ss_dssp C
T ss_pred C
Confidence 4
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=3.8e-07 Score=91.78 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=113.3
Q ss_pred cCCceeEEEeEeCCCCC-cc------chhhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCC
Q 005896 73 RFERVRHSSYACGGRDG-KN------MFEVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYR 145 (671)
Q Consensus 73 ~~~~~~~lsl~~~~~~~-~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (671)
.+..++.+.+....++. .. ...+...+++|++|.+.+.... ...............+..+++|+.|+|+++.
T Consensus 105 ~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e-~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 105 KLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFE-EQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp TGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTT-TCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred CchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchh-hcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 34567788877554431 11 1233456889999988661110 0000000011234567889999999999884
Q ss_pred ccccCcccCCCCccceeecCCCcccc-cchhhh--ccccCcEEecCCCc-c------ccccchhh--hccCcceEEeecC
Q 005896 146 IGELPIPFEDLRLLRFLNLADTDIRS-LPESKC--KLLNLEILILRNCS-R------LIKLPQEM--RNLINLRHLDIRG 213 (671)
Q Consensus 146 l~~lp~~~~~l~~L~~L~L~~n~i~~-lp~~i~--~L~~L~~L~L~~~~-~------l~~lp~~i--~~l~~L~~L~L~~ 213 (671)
-..++. + .+++|+.|+|..+.++. ....++ .+++|+.|+|+.+. . +..+...+ ..+++|++|++.+
T Consensus 184 ~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 184 NLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp TCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred Cceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 234444 4 38899999999888762 234444 78999999986421 1 22222223 3578999999999
Q ss_pred CccccccCcc---CCCCCCCCccceeEecCCcccccccCchhhHhcCCccEEecccCCCChhhhhhhccCCCCCCCceEE
Q 005896 214 AKLLKEMPFG---MKELNKLQTLSNFIVGKGECASGLEDLKSLNLLCDELCIAGLENVNSPQNAREAALREKHNLEALTL 290 (671)
Q Consensus 214 ~~~~~~~p~~---l~~l~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 290 (671)
|.+....+.. ...+++|++|++..+...... ...+...+..+++|+.|++
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G---------------------------~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEG---------------------------ARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH---------------------------HHHHHTTHHHHTTCSEEEC
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHH---------------------------HHHHHhhcccCCcceEEEC
Confidence 8854322222 235778888887543322100 0111222345678899999
Q ss_pred EEecC
Q 005896 291 EWGSQ 295 (671)
Q Consensus 291 ~~~~~ 295 (671)
+.|.+
T Consensus 315 ~~n~i 319 (362)
T 2ra8_A 315 KYNYL 319 (362)
T ss_dssp CSBBC
T ss_pred CCCcC
Confidence 88876
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.27 E-value=0.00018 Score=73.42 Aligned_cols=82 Identities=6% Similarity=0.024 Sum_probs=48.8
Q ss_pred hhhcccCCccEEecccccccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCccccc
Q 005896 94 EVFNEIGHLRTFLPLRLRIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSL 172 (671)
Q Consensus 94 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~l 172 (671)
+.+....+|+++.+.. ....+...+|.++.+|+.+.+..+ +..++ .+|.++ +|+.+.+.. .++.+
T Consensus 40 ~~~~~~~~i~~v~ip~-----------~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I 105 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-----------GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKF 105 (379)
T ss_dssp TTGGGGGGCSEEEECT-----------TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEE
T ss_pred cccccccCCEEEEeCC-----------CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEe
Confidence 4455667777777766 125566777888888888887643 55555 455554 455555543 35555
Q ss_pred ch-hhhccccCcEEecCCC
Q 005896 173 PE-SKCKLLNLEILILRNC 190 (671)
Q Consensus 173 p~-~i~~L~~L~~L~L~~~ 190 (671)
+. .+.. .+|+.+.+..+
T Consensus 106 ~~~aF~~-~~L~~i~lp~~ 123 (379)
T 4h09_A 106 GDYVFQG-TDLDDFEFPGA 123 (379)
T ss_dssp CTTTTTT-CCCSEEECCTT
T ss_pred ccceecc-CCcccccCCCc
Confidence 43 2333 36777776553
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.26 E-value=7.3e-05 Score=76.31 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=58.8
Q ss_pred hhhcCCCceeEEEecCCCccccC-cccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCCccccccchhhhccCc
Q 005896 128 DLLPMFKMLRMLSLQGYRIGELP-IPFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNCSRLIKLPQEMRNLIN 205 (671)
Q Consensus 128 ~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~ 205 (671)
.+|....+|+.+.+.. .++.++ .+|.++.+|+.+.|..+ ++.|+ .+|.++ +|+.+.+-. .+..++.......+
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTD 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceeccCC
Confidence 4677788899998875 477776 67899999999999754 77774 567776 677777754 36666654334457
Q ss_pred ceEEeecCC
Q 005896 206 LRHLDIRGA 214 (671)
Q Consensus 206 L~~L~L~~~ 214 (671)
|+.+.+..+
T Consensus 115 L~~i~lp~~ 123 (379)
T 4h09_A 115 LDDFEFPGA 123 (379)
T ss_dssp CSEEECCTT
T ss_pred cccccCCCc
Confidence 888887654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=3e-07 Score=87.49 Aligned_cols=104 Identities=22% Similarity=0.161 Sum_probs=66.1
Q ss_pred hcCCCceeE--EEecCCCccccCcc----cCCCCccceeecCCCccccc---chhhhccccCcEEecCCCccccccchhh
Q 005896 130 LPMFKMLRM--LSLQGYRIGELPIP----FEDLRLLRFLNLADTDIRSL---PESKCKLLNLEILILRNCSRLIKLPQEM 200 (671)
Q Consensus 130 ~~~l~~L~~--L~L~~~~l~~lp~~----~~~l~~L~~L~L~~n~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i 200 (671)
|...+.|+. ++++.|....++.. ..++++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+.. +
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~-l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE-L 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG-G
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh-h
Confidence 444455555 55666644333321 14567788888888887754 355677888888888887 6665532 5
Q ss_pred hccC--cceEEeecCCccccccCc-------cCCCCCCCCccce
Q 005896 201 RNLI--NLRHLDIRGAKLLKEMPF-------GMKELNKLQTLSN 235 (671)
Q Consensus 201 ~~l~--~L~~L~L~~~~~~~~~p~-------~l~~l~~L~~L~~ 235 (671)
..+. +|++|+|++|.+.+.+|. .+..+++|+.|+.
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 5554 788888888886555552 2556777777764
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=8.6e-07 Score=89.16 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=19.6
Q ss_pred CCCccEEEEeCCCCCCC----CC-CCCCCCCccEEEEeCCC
Q 005896 340 FSEMKVLKLENCDNCAA----LP-SLGLMSSLKILAVKGLK 375 (671)
Q Consensus 340 l~~L~~L~l~~~~~~~~----~~-~l~~l~~L~~L~L~~~~ 375 (671)
+++|++|+|+.|.+.+. ++ .+..+++|+.|++++|.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 45666666666554431 11 23455667777776663
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=1.4e-06 Score=78.80 Aligned_cols=111 Identities=16% Similarity=0.095 Sum_probs=64.3
Q ss_pred hhcccCCccEEecccccccCCCCCc-ccch---hhhhhhhcCCCceeEEEecCCCccc-----cCcccCCCCccceeecC
Q 005896 95 VFNEIGHLRTFLPLRLRIRGGSNTS-YITR---SVLSDLLPMFKMLRMLSLQGYRIGE-----LPIPFEDLRLLRFLNLA 165 (671)
Q Consensus 95 ~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~---~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~ 165 (671)
.+...+.|++|.+.+ + .+.. .....++...+.|++|+|++|.++. +...+...+.|++|+|+
T Consensus 31 ~l~~~~~L~~L~L~~---------n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 31 IQNNDPDLEEVNLNN---------IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHTTCTTCCEEECTT---------CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHhcCCCCCEEEecC---------CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 344566777777766 2 2211 2333455566677777777776643 23344445667777777
Q ss_pred CCcccc-----cchhhhccccCcEEec--CCCccccc-----cchhhhccCcceEEeecCCc
Q 005896 166 DTDIRS-----LPESKCKLLNLEILIL--RNCSRLIK-----LPQEMRNLINLRHLDIRGAK 215 (671)
Q Consensus 166 ~n~i~~-----lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~l~~L~~L~L~~~~ 215 (671)
+|.|+. +...+...++|++|+| ++| .++. +...+...++|++|++++|.
T Consensus 102 ~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 102 SNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 777663 3455566667777777 556 4432 23334455667777777666
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.1e-06 Score=77.21 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=37.3
Q ss_pred CCCCCCCeeEeecCCCCcccCCC--CC----CCCcceEEEccCcCcccccccccCCCCCcCeEEecccCCCccc
Q 005896 497 HKLNSLRDLGIQLCPNLVSFPEE--GF----PTNLTTLVIGNFKLYKTLVQWGLHRLTSLKHLWIAVSDDEAEC 564 (671)
Q Consensus 497 ~~l~~L~~L~l~~~~~l~~~~~~--~~----~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~c~~~~~ 564 (671)
..+++|++|+|++|..+++-.-. .. .++|++|+|++|..++...-..+..+++|++|++++ |..++.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~-c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD-LPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEES-CTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCC-CCCCCc
Confidence 46667777777777666542211 11 135666666666666543323345566666666666 655544
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.11 E-value=7.7e-07 Score=80.58 Aligned_cols=117 Identities=13% Similarity=0.084 Sum_probs=88.6
Q ss_pred hhhhhhhhcCCCceeEEEecCC-Cccc-----cCcccCCCCccceeecCCCcccc-----cchhhhccccCcEEecCCCc
Q 005896 123 RSVLSDLLPMFKMLRMLSLQGY-RIGE-----LPIPFEDLRLLRFLNLADTDIRS-----LPESKCKLLNLEILILRNCS 191 (671)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~L~~~-~l~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~ 191 (671)
.+.....+...+.|+.|+|++| .++. +...+...++|++|+|++|.|.. +...+...++|++|+|++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N- 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN- 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 3445567888999999999999 8743 44667778999999999999973 4556677789999999999
Q ss_pred cccc-----cchhhhccCcceEEee--cCCccccc----cCccCCCCCCCCccceeEecC
Q 005896 192 RLIK-----LPQEMRNLINLRHLDI--RGAKLLKE----MPFGMKELNKLQTLSNFIVGK 240 (671)
Q Consensus 192 ~l~~-----lp~~i~~l~~L~~L~L--~~~~~~~~----~p~~l~~l~~L~~L~~~~~~~ 240 (671)
.++. +...+...+.|++|+| ++|.+... +...+...++|++|++..+..
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 6653 4556777889999999 78884322 334455667889888766543
No 160
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.10 E-value=7e-07 Score=95.94 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=46.1
Q ss_pred Ccc--CCccCCCCCccHHHHHHHHHHHHHhCCCCeeecCCCcCeEEEchhHHHHHHHhhhcceE
Q 005896 1 MAG--GIIRQSRSKERLEDWGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVSGETIF 62 (671)
Q Consensus 1 iae--G~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~mHdlv~dl~~~~~~~~~~ 62 (671)
+|+ |||.....+.+++++|+ ||++|++|||+++...+....|+|||+|||+|++++++++.
T Consensus 411 ~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 411 SCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 467 99998444777889998 99999999999988644456899999999999999987664
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=4.3e-06 Score=79.53 Aligned_cols=82 Identities=23% Similarity=0.174 Sum_probs=65.5
Q ss_pred hhcCCCceeEEEecCCCccccC---cccCCCCccceeecCCCcccccchhhhccc--cCcEEecCCCccccccch-----
Q 005896 129 LLPMFKMLRMLSLQGYRIGELP---IPFEDLRLLRFLNLADTDIRSLPESKCKLL--NLEILILRNCSRLIKLPQ----- 198 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~~l~~lp---~~~~~l~~L~~L~L~~n~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~----- 198 (671)
....+++|+.|+|++|.+..++ ..+..+++|++|+|++|.|+.+ ..+..+. +|+.|+|++|.....+|.
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 4467899999999999987654 5567899999999999999977 4455565 999999999944445552
Q ss_pred --hhhccCcceEEee
Q 005896 199 --EMRNLINLRHLDI 211 (671)
Q Consensus 199 --~i~~l~~L~~L~L 211 (671)
.+..+++|+.||-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 3678999999974
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.54 E-value=0.0034 Score=52.39 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=42.5
Q ss_pred eEEecccCCCcc--cCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCCC
Q 005896 552 HLWIAVSDDEAE--CFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNCP 612 (671)
Q Consensus 552 ~L~l~~~c~~~~--~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 612 (671)
.++-++ +.++ .+|. ..+++|++|+|++ |+|+.++...|..+++|++|+|.+||
T Consensus 12 ~v~Cs~--~~L~~~~vP~-----~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR--RGLTWASLPT-----AFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS--SCCCTTTSCS-----CCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC--CCCccccCCC-----CCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 455555 6666 8887 5778899999998 78999987778889999999999885
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.32 E-value=0.0052 Score=51.23 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=37.3
Q ss_pred EEEecCCCcc--ccCcccCCCCccceeecCCCcccccc-hhhhccccCcEEecCCC
Q 005896 138 MLSLQGYRIG--ELPIPFEDLRLLRFLNLADTDIRSLP-ESKCKLLNLEILILRNC 190 (671)
Q Consensus 138 ~L~L~~~~l~--~lp~~~~~l~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~ 190 (671)
+++.++++++ .+|..+. .+|++|+|++|.|+.+| ..|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 6777777777 7776542 45788888888888875 34677778888888777
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.15 E-value=0.018 Score=51.47 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=29.1
Q ss_pred hhcCCCceeEEEecCC-Cccc-----cCcccCCCCccceeecCCCcccc-----cchhhhccccCcEEecCCC
Q 005896 129 LLPMFKMLRMLSLQGY-RIGE-----LPIPFEDLRLLRFLNLADTDIRS-----LPESKCKLLNLEILILRNC 190 (671)
Q Consensus 129 ~~~~l~~L~~L~L~~~-~l~~-----lp~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~ 190 (671)
.+..-+.|+.|+|+++ .|+. +-..+..-+.|+.|+|++|.|.. |-..+..-+.|+.|+|++|
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3344455555555553 4421 22334444555555555555541 2223334445555555555
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.09 E-value=0.017 Score=51.65 Aligned_cols=114 Identities=18% Similarity=0.060 Sum_probs=77.1
Q ss_pred hcccCCccEEecccc-cccCCCCCcccchhhhhhhhcCCCceeEEEecCCCccc-----cCcccCCCCccceeecCCCcc
Q 005896 96 FNEIGHLRTFLPLRL-RIRGGSNTSYITRSVLSDLLPMFKMLRMLSLQGYRIGE-----LPIPFEDLRLLRFLNLADTDI 169 (671)
Q Consensus 96 ~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~L~~n~i 169 (671)
..+-+.|+.|.+.++ .+. .......-.++..-+.|+.|+|++|.++. +-..+..-+.|++|+|++|.|
T Consensus 37 l~~n~~L~~L~L~~nn~ig------d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVS------KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HTTCSSCCEEECTTCCSSC------HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HhcCCCccEEECCCCCCCC------HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 345678999998761 110 11123455677788899999999999854 334455667899999999999
Q ss_pred cc-----cchhhhccccCcEEecCCCc--ccc-----ccchhhhccCcceEEeecCCc
Q 005896 170 RS-----LPESKCKLLNLEILILRNCS--RLI-----KLPQEMRNLINLRHLDIRGAK 215 (671)
Q Consensus 170 ~~-----lp~~i~~L~~L~~L~L~~~~--~l~-----~lp~~i~~l~~L~~L~L~~~~ 215 (671)
.. +-..+..-+.|+.|+|++|. .++ .+...+..-+.|+.|+++.+.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 82 34455566779999998762 122 133335556788999988765
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.97 E-value=0.085 Score=62.73 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCCCeeecCCCcCeEEEchhHHHHHHHhhhcc
Q 005896 16 EDWGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVSGET 60 (671)
Q Consensus 16 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~~mHdlv~dl~~~~~~~~ 60 (671)
++.+++++++|++++|++....+....|+|||+||++|+..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 577899999999999999876344456999999999999987765
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.57 E-value=0.51 Score=50.77 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCeeecCCCcCeEEEchhHHHHHHHhh
Q 005896 17 DWGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAELVS 57 (671)
Q Consensus 17 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~mHdlv~dl~~~~~ 57 (671)
+.+.+++++|+++|||+....+....|+|||+||++++..+
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 46789999999999999765344568999999999998874
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=81.53 E-value=0.77 Score=51.75 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCCeeecCCCcCeEEEchhHHHHHH
Q 005896 17 DWGSKCFHDLVSRSIFQQTAISDSCKFVMHDLIHDLAE 54 (671)
Q Consensus 17 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~mHdlv~dl~~ 54 (671)
+.++++|++|+++|||+... ....|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d~--~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP--KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS--SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeC--CCCEEEehHHHHHHhc
Confidence 46899999999999999853 4678999999999663
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.98 E-value=37 Score=25.99 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=28.8
Q ss_pred CcccCCcccccccCCCCcCeEeccCCCCCccCCccCCCCCCccCeEeecCC
Q 005896 561 EAECFPDEEIGMTLPTSLTHLSFCGFQNLIFLSSMGFQNLTSLQYLRIGNC 611 (671)
Q Consensus 561 ~~~~i~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 611 (671)
.++.|....+ ..+.+|+++.|-. .++.|....|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF--~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLF--AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTT--TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHh--cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 3444444233 4455566666653 466776677888888888888764
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.89 E-value=1.3e+02 Score=22.85 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=29.0
Q ss_pred cccccccccCCCCCcCeEEecccCCCcccCCcccccccCCCCcCeEeccC
Q 005896 536 YKTLVQWGLHRLTSLKHLWIAVSDDEAECFPDEEIGMTLPTSLTHLSFCG 585 (671)
Q Consensus 536 l~~~~~~~~~~l~~L~~L~l~~~c~~~~~i~~~~~~~~~~~~L~~L~l~~ 585 (671)
++.+....|.++.+|+.+.|-. .++.|....+ ..+.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~---~v~~Ig~~aF--~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP---NIGLLYDGMF--SGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT---TSSCCCTTSS--TTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCC---chheEcHHHH--hccCCccEEEEcC
Confidence 4455556777888888887753 4556655334 5666777777665
Done!