BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005897
         (671 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5RAX0|PAF1_PONAB RNA polymerase II-associated factor 1 homolog OS=Pongo abelii
           GN=PAF1 PE=2 SV=1
          Length = 533

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 163/335 (48%), Gaps = 42/335 (12%)

Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDL 341
           +C++K+ N LP+    PK +    D++RF +Y  +SLEK +K  L  EPDLG+ +DL++ 
Sbjct: 30  VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINP 89

Query: 342 SVYN-PPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSM 400
             Y   P+V   LDP DE+LL ++E+  P      KR ++   K V W+ KT+YIS    
Sbjct: 90  DTYRIDPNV--LLDPADEKLL-EEEIQAPTSS---KRSQQHA-KVVPWMRKTEYIST--- 139

Query: 401 ESARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHAT 453
           E  R  ++     E  E+K G S+ +         DR+ QI  IE +FE A K    H +
Sbjct: 140 EFNRYGIS----NEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYS 195

Query: 454 NKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYV 513
              + PVE++P+ PDF+ + +      FD  P       +  D S   A E   +M   +
Sbjct: 196 KPRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAM 245

Query: 514 ATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDAD 565
             G       +F+AY +P    L K   D+ E++ ++          REY+W+V+   + 
Sbjct: 246 IRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASK 305

Query: 566 --DPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEG 598
             +   + +  + D   Y  L T++ L K+RA  G
Sbjct: 306 GYEENYFFIFREGDGVYYNELETRVRLSKRRAKAG 340


>sp|Q8N7H5|PAF1_HUMAN RNA polymerase II-associated factor 1 homolog OS=Homo sapiens
           GN=PAF1 PE=1 SV=2
          Length = 531

 Score =  119 bits (298), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 163/335 (48%), Gaps = 42/335 (12%)

Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDL 341
           +C++K+ N LP+    PK +    D++RF +Y  +SLEK +K  L  EPDLG+ +DL++ 
Sbjct: 30  VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINP 89

Query: 342 SVYN-PPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSM 400
             Y   P+V   LDP DE+LL ++E+  P      KR ++   K V W+ KT+YIS    
Sbjct: 90  DTYRIDPNV--LLDPADEKLL-EEEIQAPTSS---KRSQQHA-KVVPWMRKTEYIST--- 139

Query: 401 ESARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHAT 453
           E  R  ++     E  E+K G S+ +         DR+ QI  IE +FE A K    H +
Sbjct: 140 EFNRYGIS----NEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYS 195

Query: 454 NKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYV 513
              + PVE++P+ PDF+ + +      FD  P       +  D S   A E   +M   +
Sbjct: 196 KPRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAM 245

Query: 514 ATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDAD 565
             G       +F+AY +P    L K   D+ E++ ++          REY+W+V+   + 
Sbjct: 246 IRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASK 305

Query: 566 --DPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEG 598
             +   + +  + D   Y  L T++ L K+RA  G
Sbjct: 306 GYEENYFFIFREGDGVYYNELETRVRLSKRRAKAG 340


>sp|Q8K2T8|PAF1_MOUSE RNA polymerase II-associated factor 1 homolog OS=Mus musculus
           GN=Paf1 PE=2 SV=1
          Length = 535

 Score =  119 bits (298), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 164/335 (48%), Gaps = 42/335 (12%)

Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDL 341
           +C++K+ N LP+    PK +    D++RF +Y  +SLEK +K  L  EPDLG+ +DL++ 
Sbjct: 30  VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINP 89

Query: 342 SVYN-PPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSM 400
             Y   P+V   LDP DE+LL ++E+  P      KR ++   K V W+ KT+YIS    
Sbjct: 90  DTYRIDPNV--LLDPADEKLL-EEEIQAPTSS---KRSQQHA-KVVPWMRKTEYIST--- 139

Query: 401 ESARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHAT 453
           E  R  ++ ++     E+K G S+ +         DR+ QI  IE +FE A K    H +
Sbjct: 140 EFNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYS 195

Query: 454 NKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYV 513
              + PVE++P+ PDF+ + +      FD  P       +  D S   A E   +M   +
Sbjct: 196 KPRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAM 245

Query: 514 ATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDAD 565
             G       +F+AY +P    L K   D+ E++ ++          REY+W+V+   + 
Sbjct: 246 IRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASK 305

Query: 566 --DPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEG 598
             +   + +  + D   Y  L T++ L K+RA  G
Sbjct: 306 GYEENYFFIFREGDGVYYNELETRVRLSKRRAKAG 340


>sp|Q4V886|PAF1_RAT RNA polymerase II-associated factor 1 homolog OS=Rattus norvegicus
           GN=Paf1 PE=2 SV=1
          Length = 535

 Score =  119 bits (298), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 164/335 (48%), Gaps = 42/335 (12%)

Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDL 341
           +C++K+ N LP+    PK +    D++RF +Y  +SLEK +K  L  EPDLG+ +DL++ 
Sbjct: 30  VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINP 89

Query: 342 SVYN-PPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSM 400
             Y   P+V   LDP DE+LL ++E+  P      KR ++   K V W+ KT+YIS    
Sbjct: 90  DTYRIDPNV--LLDPADEKLL-EEEIQAPTSS---KRSQQHA-KVVPWMRKTEYIST--- 139

Query: 401 ESARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHAT 453
           E  R  ++ ++     E+K G S+ +         DR+ QI  IE +FE A K    H +
Sbjct: 140 EFNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYS 195

Query: 454 NKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYV 513
              + PVE++P+ PDF+ + +      FD  P       +  D S   A E   +M   +
Sbjct: 196 KPRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAM 245

Query: 514 ATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDAD 565
             G       +F+AY +P    L K   D+ E++ ++          REY+W+V+   + 
Sbjct: 246 IRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASK 305

Query: 566 --DPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEG 598
             +   + +  + D   Y  L T++ L K+RA  G
Sbjct: 306 GYEENYFFIFREGDGVYYNELETRVRLSKRRAKAG 340


>sp|Q2KJ14|PAF1_BOVIN RNA polymerase II-associated factor 1 homolog OS=Bos taurus GN=PAF1
           PE=2 SV=1
          Length = 532

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 164/335 (48%), Gaps = 42/335 (12%)

Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDL 341
           +C++K+ N LP+    PK +    D++RF +Y  +SLEK +K  L  EPDLG+ +DL++ 
Sbjct: 30  VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINP 89

Query: 342 SVYN-PPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSM 400
             Y   P+V   LDP DE+LL ++E+  P      KR ++   K V W+ KT+YIS    
Sbjct: 90  DTYRIDPNV--LLDPADEKLL-EEEIQAPTSS---KRSQQHA-KVVPWMRKTEYIST--- 139

Query: 401 ESARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHAT 453
           E  R  ++ ++     E+K G S+ +         DR+ QI  IE +FE A K    H +
Sbjct: 140 EFNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYS 195

Query: 454 NKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYV 513
              + PVE++P+ PDF+ + +      FD  P       +  D S   A E   +M   +
Sbjct: 196 KPRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAM 245

Query: 514 ATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDAD 565
             G       +F+AY +P    L K   D+ E++ ++          REY+W+V+   + 
Sbjct: 246 IRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASK 305

Query: 566 --DPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEG 598
             +   + +  + D   Y  L T++ L K+RA  G
Sbjct: 306 GYEENYFFIFREGDGVYYNELETRVRLSKRRAKAG 340


>sp|Q4U0S5|PAF1_DANRE RNA polymerase II-associated factor 1 homolog OS=Danio rerio
           GN=paf1 PE=1 SV=1
          Length = 503

 Score =  117 bits (293), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 162/339 (47%), Gaps = 50/339 (14%)

Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDL 341
           +C++K+ N LP+    PK +    D+ RF +Y  +SLEK +K +L  EPDLG+ +DL+  
Sbjct: 30  VCRVKYGNSLPDIPFDPKFITYPFDQHRFVQYKATSLEKQHKHELLTEPDLGVTIDLI-- 87

Query: 342 SVYNPPSVRPP----LDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISP 397
              NP + R      LDP DE+LL ++E+  P      KR ++   K V W+ KT+YIS 
Sbjct: 88  ---NPDTYRIDPNILLDPADEKLL-EEEIQAP---SSSKRSQQHA-KVVPWMRKTEYIST 139

Query: 398 LSMESARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPI 450
              E  R  ++ ++     E+K G S+ +         DR+ QI  IE +FE A K    
Sbjct: 140 ---EFNRYGVSNEKV----EVKIGVSVKQQFTEEEIYKDRDSQIAAIEKTFEDAQKSISQ 192

Query: 451 HATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPT-ADSEIYSKMDKSVRDAHESRAIM 509
           H +   + PVE+LP+ PDF+ + +      FD  P   D    + +D           +M
Sbjct: 193 HYSKPRVTPVEVLPVFPDFKMWINPCAQVIFDSDPAPKDVSAPAGVD-----------MM 241

Query: 510 KSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDV--------SFSWVREYHWDVRG 561
              +  G       +F+AY +P+ + + K   D  E++         +   REY+W+V+ 
Sbjct: 242 SQAMIRGMMDEEGNQFVAYFLPNEDTMRKRKRDVEEELDYMPEEVYEYKIAREYNWNVKN 301

Query: 562 DDAD--DPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEG 598
             +   +   + +  D D   Y  L T++ L K+RA  G
Sbjct: 302 KASKGYEENYFFIFRDADGVYYNELETRVRLSKRRAKVG 340


>sp|Q6P2Y1|PAF1_XENTR RNA polymerase II-associated factor 1 homolog OS=Xenopus tropicalis
           GN=paf1 PE=2 SV=1
          Length = 520

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 168/366 (45%), Gaps = 60/366 (16%)

Query: 254 GSRMGDRRAAPLLSGERTENRLKKPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRY 313
           G R    R  P  SG             +C++K+ N LP+    PK +    D++RF +Y
Sbjct: 14  GHRSSSHRTVPERSG------------VVCRVKYCNTLPDIPFDPKFITYPFDQNRFVQY 61

Query: 314 TFSSLEKNYKPQLHVEPDLGIPLDLLDLSVYN-PPSVRPPLDPEDEELLRDDEVVTPVKK 372
             +SLEK +K  L  EPDLG+ +DL++   Y   P+V   LD  DE+LL ++E+  P   
Sbjct: 62  KATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNV--TLDIADEKLL-EEEIQAPSSS 118

Query: 373 DGIKRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLN--- 429
              KR ++   K V W+ KT+YIS    E  R  ++ ++     E+K G S+ +      
Sbjct: 119 ---KRSQQHA-KVVPWMRKTEYIST---EFNRYGVSNEKP----EVKIGVSVKQQFTEED 167

Query: 430 ---DRERQIKEIEASFEACKLRPI--HATNKNLQPVEILPLLPDFERYDDQFVAATFDGA 484
              DR+ QI  IE +FE  + +PI  H +   + PVE++P+ PDF+ + +      FD  
Sbjct: 168 IYKDRDSQISAIEKTFEDAQ-KPISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSD 226

Query: 485 PTADSEIYSKMDKSVRDAHESRAI--MKSYVATGSDSANPEKFLAYMVPSVNELSKDMYD 542
           P              +DA  S A+  M   +  G       +F+AY +P    + K   D
Sbjct: 227 PAP------------KDASGSAALDMMSQAMIRGMMDEEGNQFVAYFLPGEETMRKRKRD 274

Query: 543 ENEDV--------SFSWVREYHWDVRGDDAD--DPTTYLVSFDDDEARYVPLPTKLNLRK 592
           + E +         +   REY+W+V+   +   +   + +  + D   Y  L T++ L K
Sbjct: 275 QEEGLDYMPEDIYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSK 334

Query: 593 KRAIEG 598
           +R   G
Sbjct: 335 RRVKAG 340


>sp|A2BD83|PAF1_XENLA RNA polymerase II-associated factor 1 homolog OS=Xenopus laevis
           GN=paf1 PE=2 SV=1
          Length = 524

 Score =  111 bits (277), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 161/336 (47%), Gaps = 44/336 (13%)

Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDL 341
           +C++K+ N LP+    PK +    D++RF +Y  +SLEK +K  L  EPDLG+ +DL++ 
Sbjct: 30  VCRVKYCNTLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINP 89

Query: 342 SVYN-PPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSM 400
             Y   P+V   LD  DE+LL ++E+  P      KR ++   K V W+ KT+YIS    
Sbjct: 90  DTYRIDPNV--TLDFADEKLL-EEEIQAPSSS---KRSQQHA-KVVPWMRKTEYIST--- 139

Query: 401 ESARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASF-EACKLRPIHAT 453
           E  R  ++ ++     E+K G S+ +         DR+ QI  IE +F +A K    H +
Sbjct: 140 EFNRYGVSNEKP----EVKIGVSVKQQFTEEDIYKDRDSQISAIEKTFDDAQKDISQHYS 195

Query: 454 NKNLQPVEILPLLPDFERYDDQFVAATFDGAPT-ADSEIYSKMDKSVRDAHESRAIMKSY 512
              + PVE++P+ PDF+ + +      FD  P   D+   + +D           +M   
Sbjct: 196 KPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDASGTAALD-----------MMSQA 244

Query: 513 VATGSDSANPEKFLAYMVPSVNELSKDMYDENEDV--------SFSWVREYHWDVRGDDA 564
           +  G       +F+AY +P  + + K   D+ E +         +   REY+W+V+   +
Sbjct: 245 MIRGMMDEEGNQFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDYKIAREYNWNVKNKAS 304

Query: 565 D--DPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEG 598
              +   + +  + D   Y  L T++ L K+R   G
Sbjct: 305 KGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAG 340


>sp|P90783|PAF1_CAEEL RNA polymerase II-associated factor 1 homolog OS=Caenorhabditis
           elegans GN=C55A6.9 PE=3 SV=2
          Length = 425

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 135/294 (45%), Gaps = 32/294 (10%)

Query: 277 KPTTFLCKLKFRNELPEPSAQPKLMAL-KKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIP 335
           +   F+ K +F N +P+     K M        RF  +  +++ ++YK  +  + D+G+ 
Sbjct: 15  RKVDFMLKPRFTNTVPDVPFDAKFMTCPFVPLGRFVEFQPAAIYRDYKHAVICDDDMGLN 74

Query: 336 LDLLDLSVYNPPSVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYI 395
           +DL+DL  Y+   +   +D +D  LL DD     + K     + +   K V W+ KT+YI
Sbjct: 75  VDLIDLKKYDEDPIETEIDEKDNILLEDDGAAKLIAK-----RSQQHSKLVPWMRKTEYI 129

Query: 396 SPLSMESARQSLT-EKQAKEL-REMKGGRSILENLNDRERQIKEIEASFEACKLRPI--H 451
           S    E  R  +T ++Q  +L   +K  + + +   D++ QI  I  +FE  + +P+  H
Sbjct: 130 ST---EFNRFGVTADRQETKLGYNLKKNQQVEDMYRDKQSQIDAINKTFEDVR-KPVKEH 185

Query: 452 ATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKS 511
            + K ++ VE   + PDF+ +   F    FDG  T  +E   + ++  + A ES  I   
Sbjct: 186 YSKKGVKAVEESFVFPDFDHWKHLFAHVQFDG-DTITTEFEEEDER--QQARESSVI--- 239

Query: 512 YVATGSDSANPEKFLAYMVPSVNELSKDM--------YDENEDVSFSWVREYHW 557
                +     +KF A  VP++  L+  M        +DE+    F   REY +
Sbjct: 240 ----KAMEFEDQKFAAVFVPTIGCLTSFMDDLELERPFDEDMKYEFLLSREYTF 289


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.130    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,533,725
Number of Sequences: 539616
Number of extensions: 18210843
Number of successful extensions: 467859
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3042
Number of HSP's successfully gapped in prelim test: 3299
Number of HSP's that attempted gapping in prelim test: 131851
Number of HSP's gapped (non-prelim): 100215
length of query: 671
length of database: 191,569,459
effective HSP length: 124
effective length of query: 547
effective length of database: 124,657,075
effective search space: 68187420025
effective search space used: 68187420025
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)