Query 005897
Match_columns 671
No_of_seqs 178 out of 223
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 15:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03985 Paf1: Paf1 ; InterPr 100.0 5E-73 1.1E-77 618.1 23.2 323 279-629 1-360 (436)
2 KOG2478 Putative RNA polymeras 100.0 8.3E-56 1.8E-60 474.2 16.7 319 277-632 14-359 (452)
3 KOG2478 Putative RNA polymeras 99.5 5.5E-15 1.2E-19 160.5 5.1 325 198-554 120-452 (452)
4 KOG1924 RhoA GTPase effector D 98.6 7.1E-08 1.5E-12 110.6 8.7 11 436-446 897-907 (1102)
5 KOG1924 RhoA GTPase effector D 98.6 1.3E-07 2.9E-12 108.3 10.0 6 136-141 582-587 (1102)
6 KOG3671 Actin regulatory prote 96.6 0.025 5.3E-07 63.8 13.2 7 46-52 331-337 (569)
7 KOG1830 Wiskott Aldrich syndro 96.1 0.41 8.8E-06 53.5 18.3 29 211-239 468-496 (518)
8 KOG1923 Rac1 GTPase effector F 89.9 0.88 1.9E-05 54.1 7.8 24 203-226 387-412 (830)
9 KOG1830 Wiskott Aldrich syndro 88.9 4 8.6E-05 46.0 11.4 11 217-227 468-478 (518)
10 KOG1923 Rac1 GTPase effector F 85.3 2.4 5.2E-05 50.6 7.7 9 202-210 391-399 (830)
11 KOG4849 mRNA cleavage factor I 84.6 10 0.00022 42.1 11.4 13 76-88 262-274 (498)
12 KOG2236 Uncharacterized conser 80.5 4.5 9.8E-05 46.0 7.2 10 100-109 446-455 (483)
13 PF03154 Atrophin-1: Atrophin- 58.7 1.9E+02 0.0041 36.3 14.4 295 1-303 368-706 (982)
14 KOG0559 Dihydrolipoamide succi 58.6 38 0.00082 38.0 8.0 15 220-234 236-250 (457)
15 KOG1984 Vesicle coat complex C 55.8 3E+02 0.0066 34.4 15.3 22 278-300 399-420 (1007)
16 COG5178 PRP8 U5 snRNP spliceos 55.2 9.1 0.0002 47.9 2.9 17 285-302 149-165 (2365)
17 KOG0132 RNA polymerase II C-te 49.7 6E+02 0.013 31.6 17.3 24 63-86 611-634 (894)
18 KOG0119 Splicing factor 1/bran 48.6 72 0.0016 37.1 8.4 26 30-55 466-491 (554)
19 PF10669 Phage_Gp23: Protein g 46.5 28 0.00061 32.3 4.0 16 228-243 83-98 (121)
20 PRK15319 AIDA autotransporter- 45.6 36 0.00077 45.0 6.0 7 548-554 1969-1975(2039)
21 KOG1985 Vesicle coat complex C 43.4 2E+02 0.0044 35.6 11.3 29 278-306 278-306 (887)
22 PRK15319 AIDA autotransporter- 41.4 44 0.00094 44.2 5.9 8 476-483 1920-1927(2039)
23 PRK13831 conjugal transfer pro 38.8 1.1E+02 0.0023 35.2 7.8 34 200-233 121-154 (432)
24 COG5178 PRP8 U5 snRNP spliceos 38.4 25 0.00054 44.4 3.0 8 280-287 110-117 (2365)
25 KOG0307 Vesicle coat complex C 38.3 5.5E+02 0.012 32.8 14.1 16 30-45 741-756 (1049)
26 KOG1925 Rac1 GTPase effector F 34.2 29 0.00064 40.3 2.6 36 351-398 415-450 (817)
27 PF01690 PLRV_ORF5: Potato lea 26.6 53 0.0011 37.8 3.0 9 283-291 126-134 (465)
28 KOG4849 mRNA cleavage factor I 26.6 4.5E+02 0.0097 29.8 9.8 18 5-22 205-222 (498)
29 PF03276 Gag_spuma: Spumavirus 26.0 2.7E+02 0.0059 33.0 8.4 11 435-445 416-426 (582)
30 KOG3088 Secretory carrier memb 21.2 1.8E+02 0.0038 32.0 5.5 8 226-233 81-88 (313)
31 KOG4571 Activating transcripti 20.2 1.2E+03 0.025 25.9 11.3 27 192-218 211-237 (294)
No 1
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=100.00 E-value=5e-73 Score=618.10 Aligned_cols=323 Identities=37% Similarity=0.668 Sum_probs=253.1
Q ss_pred cccccccccccCCCCCCCCCceeeccC-cccccccccCcchhhccCCCCcc--CCCCCcccccC--------CccCCCCC
Q 005897 279 TTFLCKLKFRNELPEPSAQPKLMALKK-DKDRFTRYTFSSLEKNYKPQLHV--EPDLGIPLDLL--------DLSVYNPP 347 (671)
Q Consensus 279 ~~fi~~iry~N~LP~PP~~PKlL~~p~-d~~r~~~y~~tSLe~~~k~~i~~--D~DLGmPLDLi--------d~~~Y~~p 347 (671)
++|||+|||+|+||+|||+||||.|++ +..+++.|.++||++++++.|+| |+||||||||| |.++|+.+
T Consensus 1 qd~i~~iry~N~LP~pp~~pK~L~~p~~~~~~~~~~~~tsL~~~~~~~~l~~~d~dlGmplDLi~~~g~~~~d~~~~~~~ 80 (436)
T PF03985_consen 1 QDFICRIRYRNNLPPPPFPPKFLDIPFTDEQRFSPYFATSLEREYKFNILVEVDADLGMPLDLIGIPGVFEGDPSAYNAP 80 (436)
T ss_pred CceeeeeeecCCCcccCCCCeeecCCCCchhccccchhhhHHHhcCcceecccccccCcccccccccCcccCChhhcCCC
Confidence 689999999999999999999999999 78999999999999999999966 99999999999 77888888
Q ss_pred CCCCCCChhhhhccCCCCccCcccccCCcccCCCCCCCcccccccccccccchhhhcchhhHHHHHHHHhhhcCCchh--
Q 005897 348 SVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSIL-- 425 (671)
Q Consensus 348 d~~~~LdPeD~aLLrD~e~l~p~~s~Gi~kksR~~~~~VSWLRRTEYISs~~~~~~r~~~t~kqake~rE~k~G~~~~-- 425 (671)
...++|||+|++||+|+.++ ++++.++++|||||||||||++.++.+ .+. ...+.+.|+.+.
T Consensus 81 ~~~~~L~p~D~~LL~d~~~~---------~~~~~~~~~VswLRrTeYiS~~~~~~~-~~~------~~~~~~~~~~~~~~ 144 (436)
T PF03985_consen 81 PNNPPLDPEDRALLRDPGAL---------KRSKPDAKNVSWLRRTEYISSEFTRKG-QSK------EKSEAKRGRNVKKK 144 (436)
T ss_pred CCCCCCCHHHHHHhcCcccc---------ccccCCcCCCcccccceeecccccccc-ccc------cchhhccccccccc
Confidence 77889999999999998653 256667789999999999999877542 111 112333344332
Q ss_pred ----cccccHHHHHHHHHhhHHHhhc---CCCCCCCCCCceeEeecCCCCcccccCceEEEEEcCCCCCCchhhhccChh
Q 005897 426 ----ENLNDRERQIKEIEASFEACKL---RPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKS 498 (671)
Q Consensus 426 ----~~~~dresQI~aIEkTFeaAkk---~lkHPTKpnLkaVev~PLLPD~d~w~~~Yv~VkFD~dPs~~~e~~~kl~~s 498 (671)
+.+.++++||++||+||++|++ .++||||||||||++|||||||++|++.|++|+||++|+.+..... .
T Consensus 145 ~~~~~~~~d~~~qi~~Ie~tF~~a~~~~~~~~HPtK~~lk~Ve~~PllPD~~~~~~~y~~v~Fd~~P~~~~~~~~----~ 220 (436)
T PF03985_consen 145 FKEEELYNDRESQIRAIEKTFEAAKKDLPRLKHPTKPNLKAVEVWPLLPDFDAWPNPYVQVKFDGDPAPDDKEKE----E 220 (436)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhhccccccCCCCCCCeEEEEecCCCCchhcCCceEEEEECCCCcccccccc----c
Confidence 2368999999999999999988 7999999999999999999999999999999999999986542221 1
Q ss_pred hhhHHHHHHHHhhhhccCCCCCCcceeEEeecCCcc-------ccccc---c----cCCCCCeecceeeeeeceeccCCC
Q 005897 499 VRDAHESRAIMKSYVATGSDSANPEKFLAYMVPSVN-------ELSKD---M----YDENEDVSFSWVREYHWDVRGDDA 564 (671)
Q Consensus 499 ~r~~~Es~Alikp~~~~~~D~e~ge~flaY~lP~~~-------el~k~---l----~Dede~~~Yk~vReYd~~v~~~~~ 564 (671)
........+|++++. .++++||+||||+.. .+.+. . +++++.|.|+|||+|+|++++...
T Consensus 221 ~~~~~~~~~i~~p~~------~~~~~fvsy~lP~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~y~~vReY~~~~~~~~~ 294 (436)
T PF03985_consen 221 QEEQALQAAIFRPMD------SEGDQFVSYYLPDKEDAKELKEKLEKNSPDRDEEDDDDDEEYEYKRVREYEWSVQNEAS 294 (436)
T ss_pred hhHHHHhhhccCCCC------CCCcceeeEEecChhhhhHhHHhhhcccccccccccCCCceeeccceecccceeeccCC
Confidence 112222346777764 356789999999322 12211 1 144577999999999999986442
Q ss_pred -CCCceEEEE-EcCCceEEecCCCcceecccccccCCCCcccccCCCCceEEEeeccc-hHHHHHhhh
Q 005897 565 -DDPTTYLVS-FDDDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRAN-VTAIELKEQ 629 (671)
Q Consensus 565 -~~~~e~~l~-Fddg~AyY~PL~tRi~LrKrRaK~~~~~dei~~f~~ps~Itv~~r~~-~~e~e~~e~ 629 (671)
.+..+|+|+ +++++||||||.+||+|||||.... ...+....+.+.|+|++|++ .+|+..|+.
T Consensus 295 ~~~e~~i~f~~~~~k~ayY~pI~~Rv~LrkrR~~~~--~~~~~~~~~~d~i~V~~R~p~e~E~~~~~~ 360 (436)
T PF03985_consen 295 KGYEENIFFVDFKQKAAYYYPIETRVRLRKRRTNSK--IRPKVREQRPDQITVKHRDPTEEEEAERDK 360 (436)
T ss_pred CCccceEEEEecCCCceEEeeccccceeeeeccccc--cccccccCCCceEEEEeCCCCHHHHHHHHH
Confidence 455567777 6689999999999999999993322 22345667789999999975 555555553
No 2
>KOG2478 consensus Putative RNA polymerase II regulator [Transcription]
Probab=100.00 E-value=8.3e-56 Score=474.20 Aligned_cols=319 Identities=29% Similarity=0.539 Sum_probs=253.6
Q ss_pred CCcccccccccccCCCCCCCCCceeeccCcccccccccCcchhhccCCCCccCCCCCcccccCCccCCCCC-------CC
Q 005897 277 KPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDLSVYNPP-------SV 349 (671)
Q Consensus 277 r~~~fi~~iry~N~LP~PP~~PKlL~~p~d~~r~~~y~~tSLe~~~k~~i~~D~DLGmPLDLid~~~Y~~p-------d~ 349 (671)
+.++|||+|+|.|.||+|||+||||.||+...+|+.|..++++.++++.+++|.||||++|||+...|... ..
T Consensus 14 rk~~~i~pvky~N~LP~pPfd~Kfl~yP~~p~~~~~y~~~~~~~q~k~~~i~d~dlg~pvdLi~~~~~~q~~~~~~~~~d 93 (452)
T KOG2478|consen 14 RKNDFICPVKYTNPLPDPPFDPKFLTYPFPPPRFVQYQPTSLYKQFKHDLITDPDLGMPVDLINDPGYDQDPNSLLDPAD 93 (452)
T ss_pred cccccccCcccCCCCCCCCCCcccccCCCCcchhhhcCccccccccccccccCCCCCCCccccCCccccCCchhhccccc
Confidence 68999999999999999999999999999999999999999999999999889999999999999766532 23
Q ss_pred CCCCChhhhhccCCCCccCcccccCCcccCCCCCCCcccccccccccccchhhhcchhhHHHHHHHHhhhcCCch-----
Q 005897 350 RPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSI----- 424 (671)
Q Consensus 350 ~~~LdPeD~aLLrD~e~l~p~~s~Gi~kksR~~~~~VSWLRRTEYISs~~~~~~r~~~t~kqake~rE~k~G~~~----- 424 (671)
...|+++|++||.+. ++..+++.|+|||+|||||++.++...... .+.+.+.|+++
T Consensus 94 ~~~L~~~~rall~~~-------------R~~~h~~~vp~lrkteyiste~~r~~~~~~------~~~~~k~~~~~~k~~~ 154 (452)
T KOG2478|consen 94 SKLLEPRERALLKDK-------------RSQQHSKTVPWLRKTEYISTEFNRAKIEAH------DNLELKKGRSLKKNSQ 154 (452)
T ss_pred ccccChhhhcccccc-------------ccccccccccchhhhHHHHHHHHhhhhhcc------Cccchhhhhhcccccc
Confidence 556777777777653 234578899999999999998775432110 11222333332
Q ss_pred -hcccccHHHHHHHHHhhHHHhhcC-CCCCCCCCCceeEeecCCCCcccccCceEEEEEcCCCCCCchhhhccChhhhhH
Q 005897 425 -LENLNDRERQIKEIEASFEACKLR-PIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDA 502 (671)
Q Consensus 425 -~~~~~dresQI~aIEkTFeaAkk~-lkHPTKpnLkaVev~PLLPD~d~w~~~Yv~VkFD~dPs~~~e~~~kl~~s~r~~ 502 (671)
.+.+.++++||++||+||+++.++ .+||+|++|++|++|+|||||++|.+.|++|+||.+|.... .+ ....
T Consensus 155 ~~~~~~d~~~Qi~aI~~tF~d~~kpl~~Hpskpgv~pV~~~~vfPDts~~k~~~~qV~fD~dp~~~~-~~------~~~~ 227 (452)
T KOG2478|consen 155 KEEMYKDVESQIKAIEKTFEDVQKPLRQHPSKPGVKPVEVWPVFPDTSMWKHLFAQVIFDLDPAPST-KS------TIAE 227 (452)
T ss_pred hhhcccchHHHHhhhhhhhhhhcchhhhCCCCCCceeeeecccCCChhhhhCcceEEEecCCCCccc-cc------chHH
Confidence 335679999999999999999987 78999999999999999999999999999999999998543 11 1223
Q ss_pred HH--HHHHHhhhhccCCCCCCcceeEEeecCCccccccc--------ccCCCCCeecceeeeeeceeccCCC-CCCceEE
Q 005897 503 HE--SRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKD--------MYDENEDVSFSWVREYHWDVRGDDA-DDPTTYL 571 (671)
Q Consensus 503 ~E--s~Alikp~~~~~~D~e~ge~flaY~lP~~~el~k~--------l~Dede~~~Yk~vReYd~~v~~~~~-~~~~e~~ 571 (671)
|+ ..+||+++ +++.+++||+||||+..++.+. ++++++.+.|+.+|+|+|++++.+. .+..+++
T Consensus 228 le~~~~~~~~~~-----~~~e~e~fvs~~~p~ee~~~~~~~~~e~~~l~~eddv~ey~~~R~y~~~mk~~a~~~~~~~~f 302 (452)
T KOG2478|consen 228 LESMNESIFRGP-----MDEEGEQFVSYFLPTEETLKKRLADLEEEMLRDEDDVYEYKIAREYDWNMKGKASKGYTENYF 302 (452)
T ss_pred Hhhhchhheecc-----ccccchhhhheecCChhhhhhhhhhhhhcccccccchhhhhhhhcccchhccCCCccccceEE
Confidence 32 34566654 4578899999999998876643 2455677889999999999998885 5666777
Q ss_pred EEEc-CCceEEecCCCcceecccccccCCCCcccccCCCCceEEEeeccc-hHHHHHhhhcCC
Q 005897 572 VSFD-DDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRAN-VTAIELKEQGGN 632 (671)
Q Consensus 572 l~Fd-dg~AyY~PL~tRi~LrKrRaK~~~~~dei~~f~~ps~Itv~~r~~-~~e~e~~e~~~~ 632 (671)
|.++ +++|||++|.+||+|+|||+|.+.+... -+.|+|++|++ ..|+++++..-+
T Consensus 303 ~i~~~~~~v~yn~~~~rvrl~kr~vk~~~~~~~------i~~l~vs~r~~n~~e~~~~~~~~~ 359 (452)
T KOG2478|consen 303 FINDEDNQVYYNELETRVRLMKRRVKAGVSLNN------IDKLEVSLRDLNSKELEAQDKNRR 359 (452)
T ss_pred EEEecCCceeechHhhHHHHhhcccccccCccc------ccceeEeecCCCchHHHHHHHhhc
Confidence 7777 4789999999999999999998876543 36789999974 667776665544
No 3
>KOG2478 consensus Putative RNA polymerase II regulator [Transcription]
Probab=99.53 E-value=5.5e-15 Score=160.48 Aligned_cols=325 Identities=24% Similarity=0.214 Sum_probs=241.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhh---hhhccCCCCCCCcccccCCccccCCCCCcccccc-
Q 005897 198 SGRVETEEERRIRKKREYEKHRQEEKHRLQMKESQNVVMQKS---QMVASGKGGHGSMVGSRMGDRRAAPLLSGERTEN- 273 (671)
Q Consensus 198 ~~~~~~~ee~~~rkkre~~k~r~eek~~q~~k~~q~~~~~~~---q~~~~~~~~~~~~~~~r~~~~~~~~~~~~~r~en- 273 (671)
..+.|.++|+..|.+++....++-++.+++++.+|...|-+. |..+.-++ -.++..+
T Consensus 120 lrkteyiste~~r~~~~~~~~~~~k~~~~~~k~~~~~~~~~d~~~Qi~aI~~t-------------------F~d~~kpl 180 (452)
T KOG2478|consen 120 LRKTEYISTEFNRAKIEAHDNLELKKGRSLKKNSQKEEMYKDVESQIKAIEKT-------------------FEDVQKPL 180 (452)
T ss_pred hhhhHHHHHHHHhhhhhccCccchhhhhhcccccchhhcccchHHHHhhhhhh-------------------hhhhcchh
Confidence 455799999999999988888888888887776666444322 11111111 1122222
Q ss_pred ccCCCcccccccccccCCCCCCCC-CceeeccCc--ccccccccCcchhhccCCCCccCCCCCcccccCCccCCCCCCCC
Q 005897 274 RLKKPTTFLCKLKFRNELPEPSAQ-PKLMALKKD--KDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDLSVYNPPSVR 350 (671)
Q Consensus 274 ~~~r~~~fi~~iry~N~LP~PP~~-PKlL~~p~d--~~r~~~y~~tSLe~~~k~~i~~D~DLGmPLDLid~~~Y~~pd~~ 350 (671)
+......++|.|++.|-|||.-+- -+|+.+-+| ...++.+.+++|+. ....|.++.+++...+++.+.+|+.....
T Consensus 181 ~~Hpskpgv~pV~~~~vfPDts~~k~~~~qV~fD~dp~~~~~~~~~~le~-~~~~~~~~~~~~e~e~fvs~~~p~ee~~~ 259 (452)
T KOG2478|consen 181 RQHPSKPGVKPVEVWPVFPDTSMWKHLFAQVIFDLDPAPSTKSTIAELES-MNESIFRGPMDEEGEQFVSYFLPTEETLK 259 (452)
T ss_pred hhCCCCCCceeeeecccCCChhhhhCcceEEEecCCCCcccccchHHHhh-hchhheeccccccchhhhheecCChhhhh
Confidence 333466789999999999997764 567777776 45777888889887 66688889999999999999999987777
Q ss_pred CCCChhhhhccCCCCccCcccccCCcccCCCCCCCcccccccccccccchhhhcchhhHHHHHHHHhhhcCCchhccccc
Q 005897 351 PPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLND 430 (671)
Q Consensus 351 ~~LdPeD~aLLrD~e~l~p~~s~Gi~kksR~~~~~VSWLRRTEYISs~~~~~~r~~~t~kqake~rE~k~G~~~~~~~~d 430 (671)
..|.+.+..+|++.+.+.. -+|.++-+.+.+.++|+-.|+|+....... .+..........+.++.+.++....++
T Consensus 260 ~~~~~~e~~~l~~eddv~e---y~~~R~y~~~mk~~a~~~~~~~~f~i~~~~-~~v~yn~~~~rvrl~kr~vk~~~~~~~ 335 (452)
T KOG2478|consen 260 KRLADLEEEMLRDEDDVYE---YKIAREYDWNMKGKASKGYTENYFFINDED-NQVYYNELETRVRLMKRRVKAGVSLNN 335 (452)
T ss_pred hhhhhhhhcccccccchhh---hhhhhcccchhccCCCccccceEEEEEecC-CceeechHhhHHHHhhcccccccCccc
Confidence 8899999999999877554 355555556778999999999999876532 222233344445666655544333333
Q ss_pred HHHHHHHHHhhHHHhhcCCCCCCCCCCceeEeec-CCCCcccccCceEEEEEcCCCCCCchhhhccChhhhhHHHHHHHH
Q 005897 431 RERQIKEIEASFEACKLRPIHATNKNLQPVEILP-LLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIM 509 (671)
Q Consensus 431 resQI~aIEkTFeaAkk~lkHPTKpnLkaVev~P-LLPD~d~w~~~Yv~VkFD~dPs~~~e~~~kl~~s~r~~~Es~Ali 509 (671)
|..||-||.+++..-.|-++++...+++++ ++++++.+...++ .-|++.+..+.+.....++..+.+-++.++.
T Consensus 336 ----i~~l~vs~r~~n~~e~~~~~~~~~~~e~~~~~~~~~Ee~e~e~~-~~~~~e~~~~se~~~~~~e~~~~ade~~~~~ 410 (452)
T KOG2478|consen 336 ----IDKLEVSLRDLNSKELEAQDKNRRQLEVLGFELELEEEYEEEEQ-EEILGEPEEDSEFFGSEDEGIEDADESSASE 410 (452)
T ss_pred ----ccceeEeecCCCchHHHHHHHhhccccccccchhhhhhhHHHHH-hhhccCchhcccccccccccccccccccccc
Confidence 888999999999889999999999999999 8999999988888 8999999988876666666666676777888
Q ss_pred hhhhccCCCCCCcceeEEeecCCcccccccccCCCCCeecceeee
Q 005897 510 KSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVRE 554 (671)
Q Consensus 510 kp~~~~~~D~e~ge~flaY~lP~~~el~k~l~Dede~~~Yk~vRe 554 (671)
+-....+++. .+.++++++|+.++....+.+.+ ...+.|+|+
T Consensus 411 ~e~~~~~~s~--~~s~~as~~ps~de~~~~~~~~~-e~~~s~~d~ 452 (452)
T KOG2478|consen 411 KEYQQRGEST--AESGSASDVPSLDEARADIRDKE-EISGSDSDE 452 (452)
T ss_pred chhhhcccch--hhhcccCCCCCccccccccCCcc-ccccccccC
Confidence 8777655432 37799999999998866655544 677888764
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=7.1e-08 Score=110.55 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=6.1
Q ss_pred HHHHhhHHHhh
Q 005897 436 KEIEASFEACK 446 (671)
Q Consensus 436 ~aIEkTFeaAk 446 (671)
..|.++|....
T Consensus 897 d~ikK~~~~m~ 907 (1102)
T KOG1924|consen 897 DEIKKNLQQME 907 (1102)
T ss_pred HHHHHHHHHHH
Confidence 45666665544
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=1.3e-07 Score=108.34 Aligned_cols=6 Identities=83% Similarity=1.962 Sum_probs=2.3
Q ss_pred CCCCCC
Q 005897 136 IPPPPP 141 (671)
Q Consensus 136 ~~pppp 141 (671)
||||||
T Consensus 582 ppPPPp 587 (1102)
T KOG1924|consen 582 PPPPPP 587 (1102)
T ss_pred CCCcCC
Confidence 333333
No 6
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.64 E-value=0.025 Score=63.82 Aligned_cols=7 Identities=0% Similarity=-0.334 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 005897 46 QNWGGYS 52 (671)
Q Consensus 46 ~~~~~~~ 52 (671)
++|++.+
T Consensus 331 ~~gnq~p 337 (569)
T KOG3671|consen 331 PGGNQPP 337 (569)
T ss_pred CCCCCCC
Confidence 4444444
No 7
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=96.07 E-value=0.41 Score=53.51 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q 005897 211 KKREYEKHRQEEKHRLQMKESQNVVMQKS 239 (671)
Q Consensus 211 kkre~~k~r~eek~~q~~k~~q~~~~~~~ 239 (671)
+.|+.|++|++|.+|+.+-+--.+||.+-
T Consensus 468 qLrKVeeqreqeakr~~v~ndvatiLsRR 496 (518)
T KOG1830|consen 468 QLRKVEEQREQEAKREAVENDVATILSRR 496 (518)
T ss_pred hhHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 45666777777777765545555555543
No 8
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.90 E-value=0.88 Score=54.10 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=12.5
Q ss_pred cHHHHHHHHHH--HHHHHHHHHHHHH
Q 005897 203 TEEERRIRKKR--EYEKHRQEEKHRL 226 (671)
Q Consensus 203 ~~ee~~~rkkr--e~~k~r~eek~~q 226 (671)
|+=++..+-++ +++.++-||.|.-
T Consensus 387 tvf~~~~De~Il~~lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 387 TVFHELNDEKILEALDFSRFEEQFKI 412 (830)
T ss_pred chhhhhhHHHHHHhhhHHHHHHHHHh
Confidence 44344433333 3456777777663
No 9
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=88.87 E-value=4 Score=46.00 Aligned_cols=11 Identities=36% Similarity=0.441 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 005897 217 KHRQEEKHRLQ 227 (671)
Q Consensus 217 k~r~eek~~q~ 227 (671)
+-|.-|++|+|
T Consensus 468 qLrKVeeqreq 478 (518)
T KOG1830|consen 468 QLRKVEEQREQ 478 (518)
T ss_pred hhHHHHHHHHH
Confidence 33334444443
No 10
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=85.32 E-value=2.4 Score=50.64 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=4.4
Q ss_pred CcHHHHHHH
Q 005897 202 ETEEERRIR 210 (671)
Q Consensus 202 ~~~ee~~~r 210 (671)
+-.+|++.+
T Consensus 391 ~~~De~Il~ 399 (830)
T KOG1923|consen 391 ELNDEKILE 399 (830)
T ss_pred hhhHHHHHH
Confidence 445555444
No 11
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=84.64 E-value=10 Score=42.05 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCCC
Q 005897 76 PPESSYPPPPPPP 88 (671)
Q Consensus 76 p~~~~~~~ppppp 88 (671)
|+|.++..-.||.
T Consensus 262 PpP~~t~~G~pP~ 274 (498)
T KOG4849|consen 262 PPPQQTMLGNPPL 274 (498)
T ss_pred CCCccccCCCCCC
Confidence 3444444444444
No 12
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.50 E-value=4.5 Score=45.97 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=5.4
Q ss_pred CCcccCCCcc
Q 005897 100 PSMYYSSNQY 109 (671)
Q Consensus 100 ~~~~~~~~~~ 109 (671)
...|.-+..|
T Consensus 446 ~P~~~mpp~~ 455 (483)
T KOG2236|consen 446 NPFNQMPPAY 455 (483)
T ss_pred CccccCCCCC
Confidence 3344566666
No 13
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=58.66 E-value=1.9e+02 Score=36.32 Aligned_cols=295 Identities=26% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCChhhhhhcCCCCCCC----CCCCCCCCCCCCcccccCCCCCCC
Q 005897 1 MASYRPFPQPPQSSFPPPPPPNQ------NPSQPPPPPQQQQQQQRPNPYSQ----NWGGYSNTGGGAQQHYHQPYSYAQ 70 (671)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 70 (671)
|-+..+|++-...-.++++-.+. .++-..++|.+.|.+..+.+... ....-....+...+|....+...+
T Consensus 368 ~s~Psp~~~~~~~~ppppa~~p~~s~ps~~ppsa~ppPlq~~P~~qp~~s~~a~pp~~t~s~s~p~~~s~~~~s~~~~~p 447 (982)
T PF03154_consen 368 LSHPSPFPQMPSNLPPPPALKPLSSYPSQHPPSAHPPPLQLMPQSQPAQSPPAQPPVLTQSQSLPPPASHHPPSGPHSSP 447 (982)
T ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccccccCCCCccccCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccCcCCCCCCCCCCCCCCCCCCCCCCCC------------CCC
Q 005897 71 PPPPPPPESSYPPPPPPPPPPPPTQQQTQPSMYYSSNQYNQNSMYPPMQPPLPPPPPSSPPPSSS------------IPP 138 (671)
Q Consensus 71 ~~~~~p~~~~~~~pppppp~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppppp~~ppp~~~------------~~p 138 (671)
+.++..-.+-.+--.++..++...........-...............-+...--..++++.+.. +-.
T Consensus 448 ~~~~~~~hp~~p~~~ps~~P~~~~~~s~~~~~P~~s~g~~~~~s~s~~~~~s~~~~~~~~~~p~~qIKeEp~eE~EepEs 527 (982)
T PF03154_consen 448 PQPPFPSHPFVPGGPPSITPPPSSSPSFPPSPPPSSPGAQPPSSISTPAPSSGGAAPSSPPLPPIQIKEEPPEEEEEPES 527 (982)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCcCCCCCCCccccccCCcccccCCCCCCCCCCCCCCCCcccccCCCCccccCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCccccc--ccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCc---HHHH--HHHH
Q 005897 139 PPPPGSPPPPPPKDVEGRDTGTSDRDKRASK--EVSRHDPGHSKQHRPPVPPPGVKKVNGGSGRVET---EEER--RIRK 211 (671)
Q Consensus 139 pppp~~~pp~pp~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ee~--~~rk 211 (671)
|++++-.|-|.|.+. .-+-+-----.|.| ++|--.-...+=-=.+. ..-|-.++-.-++|+ +-|+ |+.|
T Consensus 528 p~pppRsPSPEPkvv--Dtp~HaSQSArF~kHldRG~NSCaRTDL~F~Pl--~gSKLAkKRee~~ek~RReaEq~~reer 603 (982)
T PF03154_consen 528 PPPPPRSPSPEPKVV--DTPSHASQSARFNKHLDRGYNSCARTDLYFVPL--PGSKLAKKREERVEKARREAEQRAREER 603 (982)
T ss_pred CCCCCCCCCCCCccc--cchhhhhHHHHHHHHhhcccccccccceeeeec--CccHHhhhhHHHHHHHHhhhhccchhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhhhhhccCCCCCCCcccc--------cCCccccCCCCCccccccccCCCccccc
Q 005897 212 KREYEKHRQEEKHRLQMKESQNVVMQKSQMVASGKGGHGSMVGS--------RMGDRRAAPLLSGERTENRLKKPTTFLC 283 (671)
Q Consensus 212 kre~~k~r~eek~~q~~k~~q~~~~~~~q~~~~~~~~~~~~~~~--------r~~~~~~~~~~~~~r~en~~~r~~~fi~ 283 (671)
.||-+.+|+.|+.|+.+...+..+-+.++...+.+. ++.|. ..+..++|+.-.+---.-.|+..++|-.
T Consensus 604 ERer~~e~~rerer~~~~~r~~k~s~~~~~~~~~~p---~~~~~~~~rp~fe~pp~tvaavpPYlgpDTPALRtLSEYAR 680 (982)
T PF03154_consen 604 EREREREREREREREREAERAAKASSSSHEPRLSEP---SLSGPAPMRPPFEPPPTTVAAVPPYLGPDTPALRTLSEYAR 680 (982)
T ss_pred hhcccccchhhhhhhhhhhhhhccccCCCCCCCCCC---CCCCCCCCCCCCCCCCccccccCCCCCCCcHHHHHHHHhhc
Q ss_pred ccccccC-------CCCCCCCCceeec
Q 005897 284 KLKFRNE-------LPEPSAQPKLMAL 303 (671)
Q Consensus 284 ~iry~N~-------LP~PP~~PKlL~~ 303 (671)
...|+.. +|--+.|| ||.|
T Consensus 681 PHvmSP~nr~hPf~vpl~p~DP-lL~Y 706 (982)
T PF03154_consen 681 PHVMSPTNRNHPFYVPLGPMDP-LLAY 706 (982)
T ss_pred ccccCCCCCCCcccCCCCCCCH-HHHh
No 14
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=58.62 E-value=38 Score=38.00 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhhH
Q 005897 220 QEEKHRLQMKESQNV 234 (671)
Q Consensus 220 ~eek~~q~~k~~q~~ 234 (671)
+.-+-.+.+|.+||+
T Consensus 236 mR~RIA~RLKdsQNt 250 (457)
T KOG0559|consen 236 MRLRIAERLKDSQNT 250 (457)
T ss_pred HHHHHHHHHHhhhhh
Confidence 333334555666664
No 15
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.78 E-value=3e+02 Score=34.42 Aligned_cols=22 Identities=14% Similarity=0.437 Sum_probs=10.6
Q ss_pred CcccccccccccCCCCCCCCCce
Q 005897 278 PTTFLCKLKFRNELPEPSAQPKL 300 (671)
Q Consensus 278 ~~~fi~~iry~N~LP~PP~~PKl 300 (671)
.-||++..-|.-.= ++|.++-|
T Consensus 399 t~dfvatk~Y~~~~-k~p~ppaf 420 (1007)
T KOG1984|consen 399 TVDFVATKDYCRKT-KPPKPPAF 420 (1007)
T ss_pred ccceeeehhhhhcC-CCCCCceE
Confidence 44566655443332 44455554
No 16
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=55.24 E-value=9.1 Score=47.91 Aligned_cols=17 Identities=41% Similarity=0.810 Sum_probs=9.8
Q ss_pred cccccCCCCCCCCCceee
Q 005897 285 LKFRNELPEPSAQPKLMA 302 (671)
Q Consensus 285 iry~N~LP~PP~~PKlL~ 302 (671)
|.|.|+.|.. .+|-|+.
T Consensus 149 itfvne~prv-iep~~~a 165 (2365)
T COG5178 149 ITFVNEVPRV-IEPQLFA 165 (2365)
T ss_pred EEEeecCccc-cCcceee
Confidence 6777777654 3444443
No 17
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=49.73 E-value=6e+02 Score=31.56 Aligned_cols=24 Identities=46% Similarity=1.086 Sum_probs=17.1
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCC
Q 005897 63 HQPYSYAQPPPPPPPESSYPPPPP 86 (671)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~ppp 86 (671)
|+++.|.|.+|+|+.-+.|.+.++
T Consensus 611 ~ppPgf~PnpPpP~~~Pg~np~~p 634 (894)
T KOG0132|consen 611 HPPPGFVPNPPPPPLRPGYNPYPP 634 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Confidence 778888887777777777764433
No 18
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=48.63 E-value=72 Score=37.09 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=12.2
Q ss_pred CCChhhhhhcCCCCCCCCCCCCCCCC
Q 005897 30 PPPQQQQQQQRPNPYSQNWGGYSNTG 55 (671)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (671)
+..++.++.+.+.++++..-.++.+|
T Consensus 466 Pg~~s~~~s~~P~q~s~~~~pp~~r~ 491 (554)
T KOG0119|consen 466 PGMQSAQSSSLPQQASTTSIPPGDRQ 491 (554)
T ss_pred CCccccccccCCcccccccCCccccc
Confidence 44445555555555554433343333
No 19
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=46.48 E-value=28 Score=32.28 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=9.9
Q ss_pred HHHhhhHhhhhhhhhc
Q 005897 228 MKESQNVVMQKSQMVA 243 (671)
Q Consensus 228 ~k~~q~~~~~~~q~~~ 243 (671)
+-.+||-||.+-|+++
T Consensus 83 Lm~rQN~mm~~qqqsi 98 (121)
T PF10669_consen 83 LMNRQNNMMKQQQQSI 98 (121)
T ss_pred HHHHHhHHHHHHHHhH
Confidence 3466777776666644
No 20
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=45.60 E-value=36 Score=44.98 Aligned_cols=7 Identities=14% Similarity=0.729 Sum_probs=3.4
Q ss_pred ecceeee
Q 005897 548 SFSWVRE 554 (671)
Q Consensus 548 ~Yk~vRe 554 (671)
+-.|+++
T Consensus 1969 EANWiHn 1975 (2039)
T PRK15319 1969 EANWLHT 1975 (2039)
T ss_pred EEEEEEe
Confidence 3445554
No 21
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.41 E-value=2e+02 Score=35.56 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=24.6
Q ss_pred CcccccccccccCCCCCCCCCceeeccCc
Q 005897 278 PTTFLCKLKFRNELPEPSAQPKLMALKKD 306 (671)
Q Consensus 278 ~~~fi~~iry~N~LP~PP~~PKlL~~p~d 306 (671)
.-|||+...|.=+-|.|++-.=++++...
T Consensus 278 ~vE~iAP~eYmlR~P~Pavy~FliDVS~~ 306 (887)
T KOG1985|consen 278 VVEFIAPSEYMLRPPQPAVYVFLIDVSIS 306 (887)
T ss_pred eEEEecCcccccCCCCCceEEEEEEeehH
Confidence 45899999999999999998888888774
No 22
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=41.41 E-value=44 Score=44.24 Aligned_cols=8 Identities=13% Similarity=0.165 Sum_probs=3.9
Q ss_pred eEEEEEcC
Q 005897 476 FVAATFDG 483 (671)
Q Consensus 476 Yv~VkFD~ 483 (671)
|..|+||.
T Consensus 1920 yq~V~~D~ 1927 (2039)
T PRK15319 1920 WQNYSADS 1927 (2039)
T ss_pred EEEecccc
Confidence 44455543
No 23
>PRK13831 conjugal transfer protein TrbI; Provisional
Probab=38.84 E-value=1.1e+02 Score=35.17 Aligned_cols=34 Identities=41% Similarity=0.510 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005897 200 RVETEEERRIRKKREYEKHRQEEKHRLQMKESQN 233 (671)
Q Consensus 200 ~~~~~ee~~~rkkre~~k~r~eek~~q~~k~~q~ 233 (671)
.+|.||+=++|-+||.+.+...|.+||.|++-|.
T Consensus 121 ~~e~~~~w~~~~~~~~~e~~~~~~~~q~~a~~~a 154 (432)
T PRK13831 121 TLESEEEWRARLKREQEEQYLRERQRQRMARLQA 154 (432)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4899999999999999999999999999887765
No 24
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=38.38 E-value=25 Score=44.39 Aligned_cols=8 Identities=38% Similarity=0.854 Sum_probs=3.6
Q ss_pred cccccccc
Q 005897 280 TFLCKLKF 287 (671)
Q Consensus 280 ~fi~~iry 287 (671)
.||..++|
T Consensus 110 s~lgalky 117 (2365)
T COG5178 110 SYLGALKY 117 (2365)
T ss_pred hhhhhhhh
Confidence 34444444
No 25
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.29 E-value=5.5e+02 Score=32.80 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=6.9
Q ss_pred CCChhhhhhcCCCCCC
Q 005897 30 PPPQQQQQQQRPNPYS 45 (671)
Q Consensus 30 ~~~~~~~~~~~~~~~~ 45 (671)
++.+++|+.+..++++
T Consensus 741 ~~~~~~~~~P~~~~~p 756 (1049)
T KOG0307|consen 741 PGNQPPMAPPYPNPQP 756 (1049)
T ss_pred CCCCCCcCCCCcCCCC
Confidence 3444444444444443
No 26
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=34.15 E-value=29 Score=40.26 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=20.2
Q ss_pred CCCChhhhhccCCCCccCcccccCCcccCCCCCCCccccccccccccc
Q 005897 351 PPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPL 398 (671)
Q Consensus 351 ~~LdPeD~aLLrD~e~l~p~~s~Gi~kksR~~~~~VSWLRRTEYISs~ 398 (671)
.+|-+....||.=- . + .++. .| --.|+-+--|=+++
T Consensus 415 ipLG~AEQfLLtLS-s---I--~~L~--aR----L~LWaFklDY~~~E 450 (817)
T KOG1925|consen 415 IPLGPAEQFLLTLS-S---I--GGLA--AR----LQLWAFKLDYDSME 450 (817)
T ss_pred CCCCcHHHHHHHHh-h---h--HHHH--HH----HHHHhhhcccchhh
Confidence 47888888888521 0 0 0111 12 24788888887653
No 27
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=26.64 E-value=53 Score=37.84 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=4.2
Q ss_pred cccccccCC
Q 005897 283 CKLKFRNEL 291 (671)
Q Consensus 283 ~~iry~N~L 291 (671)
.-|.|.|.+
T Consensus 126 GlIAY~~~~ 134 (465)
T PF01690_consen 126 GLIAYDNSS 134 (465)
T ss_pred eeEEecCcc
Confidence 344455544
No 28
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=26.63 E-value=4.5e+02 Score=29.81 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 005897 5 RPFPQPPQSSFPPPPPPN 22 (671)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (671)
|-|+.++-.+-|||=++-
T Consensus 205 ~~~~~~sG~~GPPP~~~~ 222 (498)
T KOG4849|consen 205 RTGTSVSGRSGPPPLMMQ 222 (498)
T ss_pred CcCCCCCCCCCCCCcccc
Confidence 345544444444443333
No 29
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=25.98 E-value=2.7e+02 Score=32.98 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=5.7
Q ss_pred HHHHHhhHHHh
Q 005897 435 IKEIEASFEAC 445 (671)
Q Consensus 435 I~aIEkTFeaA 445 (671)
+..|...|+.-
T Consensus 416 ~~~l~~vyeiL 426 (582)
T PF03276_consen 416 IQHLNRVYEIL 426 (582)
T ss_pred HHHHHHHHHHh
Confidence 35555555543
No 30
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.23 E-value=1.8e+02 Score=31.98 Aligned_cols=8 Identities=0% Similarity=0.235 Sum_probs=3.8
Q ss_pred HHHHHhhh
Q 005897 226 LQMKESQN 233 (671)
Q Consensus 226 q~~k~~q~ 233 (671)
++++|++.
T Consensus 81 ~ELdRREr 88 (313)
T KOG3088|consen 81 QELDRRER 88 (313)
T ss_pred HHHhHHHH
Confidence 44555544
No 31
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.18 E-value=1.2e+03 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=18.8
Q ss_pred cccCCCCCCCCcHHHHHHHHHHHHHHH
Q 005897 192 KKVNGGSGRVETEEERRIRKKREYEKH 218 (671)
Q Consensus 192 ~~~~~~~~~~~~~ee~~~rkkre~~k~ 218 (671)
+...-...+..+-+|+.+||||+-+|-
T Consensus 211 ps~ie~s~~~~~~~~~~~~rkr~qnk~ 237 (294)
T KOG4571|consen 211 PSQIEKSAHPYKTPEKKLRRKRQQNKA 237 (294)
T ss_pred cccccccCCCCCCchHHHHHHHHHhHH
Confidence 444444566677888888998876665
Done!