Query 005897
Match_columns 671
No_of_seqs 178 out of 223
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 19.1 24 0.00081 32.8 0.0 8 99-106 83-90 (138)
2 2xzz_A Protein-glutamine gamma 9.1 1.2E+02 0.004 26.6 1.5 31 270-300 11-41 (102)
3 3urg_A ALR1010 protein, CCBP; 8.0 1.4E+02 0.0046 28.3 1.5 37 177-215 2-38 (146)
4 1yx4_A 26S proteasome non-ATPa 6.8 4.1E+02 0.014 24.7 4.0 55 177-234 2-65 (132)
5 1jvr_A HTLV-II MA, MA, human T 6.6 6.2E+02 0.021 23.2 5.1 39 126-164 93-131 (137)
6 2kpy_A Major pollen allergen A 5.8 6.6E+02 0.023 22.6 4.7 34 120-153 69-106 (108)
7 3dlm_A Histone-lysine N-methyl 5.8 2.6E+02 0.0089 27.9 2.3 17 570-586 104-120 (213)
8 1o7d_D Lysosomal alpha-mannosi 5.6 7.9E+02 0.027 25.2 5.9 61 554-617 109-184 (282)
9 3pq1_A Poly(A) RNA polymerase; 5.5 1.7E+02 0.006 32.2 1.0 51 178-231 5-55 (464)
10 1jer_A Cucumber stellacyanin; 4.9 1.8E+02 0.0061 26.9 0.5 30 120-149 108-137 (138)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=19.14 E-value=24 Score=32.84 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=4.1
Q ss_pred CCCcccCC
Q 005897 99 QPSMYYSS 106 (671)
Q Consensus 99 ~~~~~~~~ 106 (671)
....|++.
T Consensus 83 ~G~~YFic 90 (138)
T 1jer_A 83 LGMHYFVC 90 (138)
T ss_dssp SEEEEEEC
T ss_pred CcCEEEEc
Confidence 34455555
No 2
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=9.07 E-value=1.2e+02 Score=26.60 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred ccccccCCCcccccccccccCCCCCCCCCce
Q 005897 270 RTENRLKKPTTFLCKLKFRNELPEPSAQPKL 300 (671)
Q Consensus 270 r~en~~~r~~~fi~~iry~N~LP~PP~~PKl 300 (671)
++....+...++-+.+.|+|.|+.+.-+|.|
T Consensus 11 ~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~ 41 (102)
T 2xzz_A 11 TLLGAAVVGQECEVQIVFKNPLPVTLTNVVF 41 (102)
T ss_dssp EESSCCCSSSCEEEEEEEECCSSSCBCSEEE
T ss_pred EECCCcccCCeEEEEEEEECCCCCcccCEEE
No 3
>3urg_A ALR1010 protein, CCBP; calcium binding protein, metal binding protein; HET: MNB; 2.00A {Nostoc} PDB: 2k2v_A 2p0p_A 2p0q_A
Probab=7.97 E-value=1.4e+02 Score=28.30 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 005897 177 GHSKQHRPPVPPPGVKKVNGGSGRVETEEERRIRKKREY 215 (671)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~rkkre~ 215 (671)
|.+||||++. .+.-....+-.+.++.|||+.|-+-|+
T Consensus 2 ~~~~~~~~~~--~~~~~~~~~Ma~~~~DeeRE~RI~~EI 38 (146)
T 3urg_A 2 GSSHHHHHHS--SGLVPRGSHMASVERDETREHRIETEI 38 (146)
T ss_dssp ---------------------CCSSCCCHHHHHHHHHHT
T ss_pred Cccccccccc--cCcccCcccCCCCCcchhhhheeeeEE
No 4
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=6.79 E-value=4.1e+02 Score=24.72 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCC---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005897 177 GHSKQHRPPVPPPGVKKVNGGSGR---------VETEEERRIRKKREYEKHRQEEKHRLQMKESQNV 234 (671)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ee~~~rkkre~~k~r~eek~~q~~k~~q~~ 234 (671)
||+|+||+++..-..--.-+..+. -....=+..=-.| .+.+||+.||+...++..
T Consensus 2 ~~~~~~~~~~~~~~~~eG~g~~~~~~~~fefgvDp~~DPeLa~ALr---~Smeee~~Rqe~~~~~~~ 65 (132)
T 1yx4_A 2 GHHHHHHHHHHSSGHIEGRHMLGLGASDFEFGVDPSADPELALALR---VSMEEQRQRQEEEARRAA 65 (132)
T ss_dssp -------------------CCSCCCSSSCCSCSCGGGCHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccCCCCCccccccCccccccCCCCCcCHHHHHHHH---HhHHHHHHHHHHHHHhhc
No 5
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=6.64 E-value=6.2e+02 Score=23.22 Aligned_cols=39 Identities=28% Similarity=0.483 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 005897 126 PPSSPPPSSSIPPPPPPGSPPPPPPKDVEGRDTGTSDRD 164 (671)
Q Consensus 126 pp~~ppp~~~~~ppppp~~~pp~pp~~~~~~~~~~~~~~ 164 (671)
..+++|+.....|+.|+...|++.|+...+--+++..++
T Consensus 93 ~~~~~p~ap~~~p~~p~~~~p~~aP~~~~~~~PPPY~ep 131 (137)
T 1jvr_A 93 VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEP 131 (137)
T ss_dssp CCCCCSCSSSSSCSSCCCCSCCCCCSSSCCSCCCCCCCS
T ss_pred CCCCCccccccCCCCCcccCCCCCCCcccccCCCCCCCc
No 6
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris}
Probab=5.84 E-value=6.6e+02 Score=22.57 Aligned_cols=34 Identities=41% Similarity=0.923 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC
Q 005897 120 PPLPPPPPSSPPPSSSIPPPPPPGSPPP----PPPKDV 153 (671)
Q Consensus 120 ~~~ppppp~~ppp~~~~~ppppp~~~pp----~pp~~~ 153 (671)
|++.++.-.+++-..-.++++.....|| +||++.
T Consensus 69 ~~~~~~~~~~~~~~gg~~~~~~~gg~~~~~~~~~~~~~ 106 (108)
T 2kpy_A 69 PPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPS 106 (108)
T ss_dssp CCCCCCCCCCCSCCSSCCCCCCCCCSSCCCCCCSSCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccCC
No 7
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=5.79 E-value=2.6e+02 Score=27.93 Aligned_cols=17 Identities=41% Similarity=0.694 Sum_probs=0.0
Q ss_pred EEEEEcCCceEEecCCC
Q 005897 570 YLVSFDDDEARYVPLPT 586 (671)
Q Consensus 570 ~~l~Fddg~AyY~PL~t 586 (671)
|+|+||||.+-|+++..
T Consensus 104 yLVFFDDG~~~Yv~~~~ 120 (213)
T 3dlm_A 104 FLIFFDDGYASYVTQSE 120 (213)
T ss_dssp EEEEETTSCEEEECGGG
T ss_pred EEEEEeCCCcceecCce
No 8
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6
Probab=5.58 E-value=7.9e+02 Score=25.16 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=0.0
Q ss_pred eeecee--ccCCCCCCceEEEEEc----CCceEEecCCCcceecccccc---------cCCCCcccccCCCCceEEEee
Q 005897 554 EYHWDV--RGDDADDPTTYLVSFD----DDEARYVPLPTKLNLRKKRAI---------EGRSNDEVEHFPIPSSIAVRR 617 (671)
Q Consensus 554 eYd~~v--~~~~~~~~~e~~l~Fd----dg~AyY~PL~tRi~LrKrRaK---------~~~~~dei~~f~~ps~Itv~~ 617 (671)
|++|.| .....+...|+++.|. .+++||....++=-++|+|-+ ..-++ +-|+..+.+.++.
T Consensus 109 E~e~~Vgpipi~d~~~kEiv~r~~T~i~s~~~FYTDsNG~e~~kR~~~~r~~~~~~~~~pv~g---NYYPv~s~~~IqD 184 (282)
T 1o7d_D 109 ELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREILERRRNYRPTWKLNQTEPVAG---NYYPVNSRIYITD 184 (282)
T ss_dssp EEEEEECCCCCTTSCCEEEEEEEECCCCCTTEEEEESTTSSEEEEETTCCSSSCCCCSCTTGG---GCEEESSEEEEEC
T ss_pred EEEEEEccccccCCCCcEEEEEEEeeeccCCeEEECCCCceeeEEEeccccccccccccCccc---ceeeeeeEEEEEc
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=5.55 E-value=1.7e+02 Score=32.16 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005897 178 HSKQHRPPVPPPGVKKVNGGSGRVETEEERRIRKKREYEKHRQEEKHRLQMKES 231 (671)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~rkkre~~k~r~eek~~q~~k~~ 231 (671)
||||||..-.-+....+.++.+-+||-.|..-++|. ...+-...|+|-++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~r~~qa~rs 55 (464)
T 3pq1_A 5 HHHHHHSSGLVPRGSHMEQPSGSVETGFEDKIPKRR---FSEMQNERREQAQRT 55 (464)
T ss_dssp -----------------------------------C---CHHHHHHHHHHHHTE
T ss_pred cccccccccccCCcccccCCccccccCcccCCCCCC---HHHHHHHHHHHhcce
No 10
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=4.92 E-value=1.8e+02 Score=26.89 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005897 120 PPLPPPPPSSPPPSSSIPPPPPPGSPPPPP 149 (671)
Q Consensus 120 ~~~ppppp~~ppp~~~~~ppppp~~~pp~p 149 (671)
....+++++++|.++.+.+.|||.-||+.|
T Consensus 108 ~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~ 137 (138)
T 1jer_A 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSP 137 (138)
T ss_dssp CCC---------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Done!