Query 005897
Match_columns 671
No_of_seqs 178 out of 223
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 10:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005897.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005897hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vjja3 b.1.5.1 (A:594-692) Tr 10.7 46 0.0033 27.0 1.6 30 276-305 12-41 (99)
2 d2q3za3 b.1.5.1 (A:586-683) Tr 9.5 52 0.0038 26.6 1.5 31 275-305 12-42 (98)
3 d1g0da3 b.1.5.1 (A:584-684) Tr 6.9 58 0.0043 26.4 0.7 28 277-304 14-41 (101)
4 d1ex0a3 b.1.5.1 (A:628-727) Tr 6.4 54 0.0039 26.7 0.1 29 276-304 14-42 (100)
5 d1zhxa1 d.338.1.1 (A:2-434) Ox 6.0 1.6E+02 0.012 29.3 3.7 22 212-233 330-351 (433)
6 d1mjea2 a.171.1.1 (A:2752-2887 5.0 1.7E+02 0.013 21.0 2.1 26 200-225 12-37 (49)
7 d1q9ra1 b.1.1.1 (A:1-107) Immu 4.4 2.6E+02 0.019 21.8 3.3 33 569-617 76-113 (113)
8 d1sqwa2 d.17.6.3 (A:1-94) Nip7 4.3 2.1E+02 0.015 23.2 2.5 16 568-583 33-48 (94)
9 d2fo1d1 a.137.14.1 (D:52-114) 4.3 3.9E+02 0.029 19.6 3.8 29 204-235 16-44 (63)
10 d2pbza2 d.142.1.9 (A:100-312) 3.8 3.8E+02 0.027 24.5 4.2 20 568-592 70-89 (213)
No 1
>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=10.69 E-value=46 Score=27.02 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCCcccccccccccCCCCCCCCCceeeccC
Q 005897 276 KKPTTFLCKLKFRNELPEPSAQPKLMALKK 305 (671)
Q Consensus 276 ~r~~~fi~~iry~N~LP~PP~~PKlL~~p~ 305 (671)
+...++-+.+.|.|.|+.+.-+|.|.--..
T Consensus 12 ~v~~~~~v~vsf~NPL~~~L~~c~f~vEG~ 41 (99)
T d1vjja3 12 RVRKPVNVQMLFSNPLDEPVRDCVLMVEGS 41 (99)
T ss_dssp BTTSCEEEEEEEECCSSSCBCSEEEEEECT
T ss_pred CcCCeEEEEEEEECCCCCchhCEEEEEEeC
Confidence 345678899999999999988888865443
No 2
>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=9.51 E-value=52 Score=26.61 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=24.1
Q ss_pred cCCCcccccccccccCCCCCCCCCceeeccC
Q 005897 275 LKKPTTFLCKLKFRNELPEPSAQPKLMALKK 305 (671)
Q Consensus 275 ~~r~~~fi~~iry~N~LP~PP~~PKlL~~p~ 305 (671)
.+...++-+.+.|.|.|+.+.-+|+|.--..
T Consensus 12 ~~vg~~~~v~vsF~NPL~~~L~~c~~~vEG~ 42 (98)
T d2q3za3 12 PKQKRKLVAEVSLQNPLPVALEGCTFTVEGA 42 (98)
T ss_dssp CSSSSCEEEEEEEECCSSSCBCSEEEEEECT
T ss_pred cCcCCeEEEEEEEECCCCCchhCEEEEEEcC
Confidence 3455778899999999999888888865443
No 3
>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=6.95 E-value=58 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=22.5
Q ss_pred CCcccccccccccCCCCCCCCCceeecc
Q 005897 277 KPTTFLCKLKFRNELPEPSAQPKLMALK 304 (671)
Q Consensus 277 r~~~fi~~iry~N~LP~PP~~PKlL~~p 304 (671)
...++-+.+.|.|.|+.+.-+|+|.--.
T Consensus 14 v~~~~~v~vsf~NPL~~~L~~c~~~vEG 41 (101)
T d1g0da3 14 VWEPLTAYVSFTNPLPVPLKGGVFTLEG 41 (101)
T ss_dssp TTCCEEEEEEEECCSSSCEESCEEEEEE
T ss_pred cCCeEEEEEEEECCCCCeecCEEEEEEc
Confidence 4567889999999999988888875444
No 4
>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=6.42 E-value=54 Score=26.66 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=22.7
Q ss_pred CCCcccccccccccCCCCCCCCCceeecc
Q 005897 276 KKPTTFLCKLKFRNELPEPSAQPKLMALK 304 (671)
Q Consensus 276 ~r~~~fi~~iry~N~LP~PP~~PKlL~~p 304 (671)
....++-+.+.|.|.|+.+.-+|+|.--.
T Consensus 14 ~v~~~~~v~v~F~NPL~~~L~nc~~~vEG 42 (100)
T d1ex0a3 14 VVGSDMTVTVQFTNPLKETLRNVWVHLDG 42 (100)
T ss_dssp BTTSCEEEEEEEECCSSSCEEEEEEEEEE
T ss_pred ccCCeEEEEEEEECCCCCchhCEEEEEEc
Confidence 35577889999999999888777776543
No 5
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4, KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.03 E-value=1.6e+02 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 005897 212 KREYEKHRQEEKHRLQMKESQN 233 (671)
Q Consensus 212 kre~~k~r~eek~~q~~k~~q~ 233 (671)
+..-+|.|+||+||+..|+.+.
T Consensus 330 ~A~~eK~~LEe~QR~~Rk~re~ 351 (433)
T d1zhxa1 330 LIAKTKTELEETQRELRKEEEA 351 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999977655543
No 6
>d1mjea2 a.171.1.1 (A:2752-2887) BRCA2 tower domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.98 E-value=1.7e+02 Score=21.02 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=17.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 005897 200 RVETEEERRIRKKREYEKHRQEEKHR 225 (671)
Q Consensus 200 ~~~~~ee~~~rkkre~~k~r~eek~~ 225 (671)
|-+|+||++.+|-.+-..+++|--|.
T Consensus 12 Rn~R~EekEA~k~a~~qqKklE~Lft 37 (49)
T d1mjea2 12 RSEREEEKEALRFAEAQQKKLEALFT 37 (49)
T ss_dssp ECGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999998877655555554443
No 7
>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}
Probab=4.35 E-value=2.6e+02 Score=21.85 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=21.9
Q ss_pred eEEEEEc-----CCceEEecCCCcceecccccccCCCCcccccCCCCceEEEee
Q 005897 569 TYLVSFD-----DDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRR 617 (671)
Q Consensus 569 e~~l~Fd-----dg~AyY~PL~tRi~LrKrRaK~~~~~dei~~f~~ps~Itv~~ 617 (671)
.+.|.+. |.++||+=. .. ....|..=.+|||||
T Consensus 76 ~~~L~I~~l~~~Dsa~YyCA~---------------~~-~~~~FG~GT~LtV~~ 113 (113)
T d1q9ra1 76 DFTLTITSVQAEDLAVYYCKQ---------------SY-NLRTFGGGTKLEIKR 113 (113)
T ss_dssp EEEEEESSCCGGGCEEEEEEE---------------CS-SSCEECCCEEEEEEC
T ss_pred eEeEEecccccCCCeEEEecc---------------cC-CCCEECCCEEEEEeC
Confidence 5556664 678999931 11 123588889999986
No 8
>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.32 E-value=2.1e+02 Score=23.17 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=14.3
Q ss_pred ceEEEEEcCCceEEec
Q 005897 568 TTYLVSFDDDEARYVP 583 (671)
Q Consensus 568 ~e~~l~Fddg~AyY~P 583 (671)
+.|||.+.++.|||..
T Consensus 33 ~~y~FRLhk~RVyYvs 48 (94)
T d1sqwa2 33 GTYCFRLHNDRVYYVS 48 (94)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred CCEEEEEeCCEEEEEh
Confidence 4799999999999985
No 9
>d2fo1d1 a.137.14.1 (D:52-114) Abnormal cell lineage protein 3, Lag-3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.27 E-value=3.9e+02 Score=19.57 Aligned_cols=29 Identities=34% Similarity=0.338 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 005897 204 EEERRIRKKREYEKHRQEEKHRLQMKESQNVV 235 (671)
Q Consensus 204 ~ee~~~rkkre~~k~r~eek~~q~~k~~q~~~ 235 (671)
+|+-|.|..-. -.-++|.|+++-.+|.++
T Consensus 16 ~e~~r~rs~~a---~~~~~k~r~e~i~~qrav 44 (63)
T d2fo1d1 16 EELHRQRSELA---RANYEKARPEMIANQRAV 44 (63)
T ss_dssp HHHHHHHHHHH---HHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHhhHHHHHhHHHH
Confidence 45555555543 234677777776676654
No 10
>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=3.85 E-value=3.8e+02 Score=24.46 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=15.9
Q ss_pred ceEEEEEcCCceEEecCCCcceecc
Q 005897 568 TTYLVSFDDDEARYVPLPTKLNLRK 592 (671)
Q Consensus 568 ~e~~l~Fddg~AyY~PL~tRi~LrK 592 (671)
..|.|-| ||.||..|++|--
T Consensus 70 ~~~~~~y-----FySpi~~~lEllg 89 (213)
T d2pbza2 70 VYLYVHF-----FYSPILERLELLG 89 (213)
T ss_dssp CEEEEEE-----EEETTTTEEEEEE
T ss_pred ceeeeee-----eccccccceeeEe
Confidence 3566666 8999999999865
Done!