Query 005900
Match_columns 671
No_of_seqs 380 out of 2843
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 15:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02699 Bifunctional molybdop 100.0 4E-129 8E-134 1111.9 32.0 655 13-671 4-659 (659)
2 COG0303 MoeA Molybdopterin bio 100.0 1.1E-94 2.3E-99 781.9 19.1 395 14-434 4-402 (404)
3 PRK10680 molybdopterin biosynt 100.0 2.4E-91 5.2E-96 763.4 19.2 398 15-436 6-407 (411)
4 PRK14497 putative molybdopteri 100.0 2E-90 4.3E-95 770.4 18.6 395 13-433 7-404 (546)
5 PRK14690 molybdopterin biosynt 100.0 2.4E-89 5.3E-94 748.6 19.0 392 14-434 20-415 (419)
6 cd00887 MoeA MoeA family. Memb 100.0 2.6E-88 5.6E-93 740.5 17.6 390 19-433 1-394 (394)
7 PRK14491 putative bifunctional 100.0 1.2E-87 2.6E-92 765.1 19.4 399 12-434 194-594 (597)
8 PRK14498 putative molybdopteri 100.0 1E-83 2.2E-88 745.4 19.2 399 14-437 7-414 (633)
9 KOG2371 Molybdopterin biosynth 100.0 1.3E-59 2.8E-64 480.9 18.5 395 11-432 6-410 (411)
10 PF03453 MoeA_N: MoeA N-termin 100.0 1.9E-43 4E-48 340.8 5.4 159 16-181 1-162 (162)
11 cd03522 MoeA_like MoeA_like. T 100.0 2.7E-34 5.9E-39 302.4 1.1 270 45-347 1-297 (312)
12 TIGR00177 molyb_syn molybdenum 100.0 3.3E-31 7.2E-36 251.0 5.7 137 191-339 1-144 (144)
13 PRK09417 mogA molybdenum cofac 100.0 7.4E-31 1.6E-35 258.4 7.3 161 471-636 3-177 (193)
14 COG0521 MoaB Molybdopterin bio 100.0 2.5E-30 5.5E-35 245.7 6.9 158 468-631 4-163 (169)
15 PRK03604 moaC bifunctional mol 100.0 5.3E-30 1.2E-34 269.0 7.4 196 425-631 112-309 (312)
16 cd00758 MoCF_BD MoCF_BD: molyb 100.0 7.8E-30 1.7E-34 238.5 5.0 131 192-341 1-133 (133)
17 cd00886 MogA_MoaB MogA_MoaB fa 99.9 1.7E-28 3.7E-33 234.6 7.1 152 472-628 1-152 (152)
18 TIGR02667 moaB_proteo molybden 99.9 1.9E-28 4.1E-33 236.5 7.4 152 469-629 2-157 (163)
19 TIGR02667 moaB_proteo molybden 99.9 3.2E-29 7E-34 241.8 -0.4 140 188-347 2-155 (163)
20 cd00886 MogA_MoaB MogA_MoaB fa 99.9 1.2E-28 2.6E-33 235.7 0.9 142 191-346 1-150 (152)
21 KOG2371 Molybdopterin biosynth 99.9 1.1E-26 2.4E-31 239.0 11.7 215 424-671 164-391 (411)
22 COG0303 MoeA Molybdopterin bio 99.9 1.1E-27 2.4E-32 260.0 4.1 170 416-626 143-321 (404)
23 PF00994 MoCF_biosynth: Probab 99.9 2.1E-28 4.5E-33 232.0 -3.3 137 194-343 1-144 (144)
24 cd00887 MoeA MoeA family. Memb 99.9 2.9E-27 6.3E-32 259.3 4.1 171 416-626 135-313 (394)
25 PRK14497 putative molybdopteri 99.9 7.9E-27 1.7E-31 261.0 4.4 171 415-626 145-323 (546)
26 PRK10680 molybdopterin biosynt 99.9 6.9E-27 1.5E-31 256.2 3.7 170 416-626 144-321 (411)
27 PRK14690 molybdopterin biosynt 99.9 9.7E-27 2.1E-31 255.4 4.5 169 417-626 161-337 (419)
28 PF00994 MoCF_biosynth: Probab 99.9 4.6E-27 1E-31 222.7 -0.1 140 475-623 1-144 (144)
29 cd00758 MoCF_BD MoCF_BD: molyb 99.9 1.1E-25 2.4E-30 210.4 5.3 131 473-620 1-132 (133)
30 PRK14491 putative bifunctional 99.9 1.1E-25 2.3E-30 257.5 5.4 169 417-626 335-511 (597)
31 TIGR00177 molyb_syn molybdenum 99.9 1.1E-24 2.3E-29 206.6 6.0 128 472-618 1-142 (144)
32 PRK14498 putative molybdopteri 99.9 6.9E-25 1.5E-29 254.7 4.6 169 417-626 154-330 (633)
33 cd03522 MoeA_like MoeA_like. T 99.9 3.9E-24 8.4E-29 225.6 8.8 148 436-622 146-294 (312)
34 smart00852 MoCF_biosynth Proba 99.9 8.6E-25 1.9E-29 204.9 1.5 126 194-334 1-133 (135)
35 PLN02699 Bifunctional molybdop 99.9 3.5E-24 7.6E-29 246.7 5.1 174 416-626 148-336 (659)
36 COG1058 CinA Predicted nucleot 99.9 1.5E-23 3.2E-28 213.0 5.0 144 472-622 2-170 (255)
37 PRK03604 moaC bifunctional mol 99.9 2.2E-23 4.9E-28 219.1 3.5 136 192-346 157-304 (312)
38 cd00885 cinA Competence-damage 99.9 2.6E-23 5.5E-28 202.1 3.6 143 473-622 1-168 (170)
39 PRK01215 competence damage-ind 99.9 9.9E-23 2.1E-27 210.9 5.9 147 470-623 2-173 (264)
40 smart00852 MoCF_biosynth Proba 99.9 2.6E-22 5.7E-27 188.1 6.1 127 475-616 1-134 (135)
41 PRK01215 competence damage-ind 99.9 1.5E-22 3.3E-27 209.5 2.9 137 189-344 2-174 (264)
42 PRK03673 hypothetical protein; 99.8 1E-21 2.2E-26 213.3 4.2 146 472-624 2-172 (396)
43 PRK03670 competence damage-ind 99.8 3.9E-21 8.5E-26 197.4 6.5 144 472-621 1-176 (252)
44 TIGR00200 cinA_nterm competenc 99.8 1.7E-20 3.6E-25 205.5 6.5 146 472-624 1-172 (413)
45 PRK00549 competence damage-ind 99.8 2.9E-20 6.3E-25 204.5 6.8 145 472-623 1-170 (414)
46 TIGR00200 cinA_nterm competenc 99.8 2.3E-20 4.9E-25 204.5 4.2 135 191-346 1-174 (413)
47 PRK09417 mogA molybdenum cofac 99.8 1.1E-19 2.3E-24 179.3 1.2 131 189-334 2-144 (193)
48 cd00885 cinA Competence-damage 99.7 2.1E-19 4.5E-24 174.7 1.2 88 192-288 1-90 (170)
49 PRK03673 hypothetical protein; 99.7 2E-18 4.4E-23 187.6 2.7 147 191-346 2-174 (396)
50 PRK00549 competence damage-ind 99.7 1.2E-17 2.7E-22 183.9 2.1 145 191-344 1-171 (414)
51 PRK03670 competence damage-ind 99.6 4.6E-17 1E-21 167.4 2.1 85 191-283 1-85 (252)
52 COG1058 CinA Predicted nucleot 99.6 1.4E-16 3E-21 162.3 2.8 146 191-345 2-173 (255)
53 COG0521 MoaB Molybdopterin bio 99.6 6.3E-16 1.4E-20 147.5 1.2 142 189-343 6-155 (169)
54 PF03454 MoeA_C: MoeA C-termin 99.2 6.8E-12 1.5E-16 104.5 1.5 72 356-433 1-72 (72)
55 KOG2644 3'-phosphoadenosine 5' 94.6 0.0055 1.2E-07 63.4 -1.6 85 473-564 6-90 (282)
56 TIGR00640 acid_CoA_mut_C methy 82.7 2.3 5E-05 39.7 5.2 76 189-282 1-76 (132)
57 COG2185 Sbm Methylmalonyl-CoA 79.3 3.2 6.9E-05 39.3 4.8 76 189-282 11-86 (143)
58 PF04263 TPK_catalytic: Thiami 78.8 2.9 6.4E-05 38.6 4.4 63 216-281 44-106 (123)
59 cd03129 GAT1_Peptidase_E_like 71.5 9.2 0.0002 38.3 6.2 63 189-269 28-91 (210)
60 TIGR02069 cyanophycinase cyano 71.4 6.2 0.00013 41.0 5.0 66 189-268 27-92 (250)
61 cd06353 PBP1_BmpA_Med_like Per 68.6 11 0.00023 39.3 6.1 44 223-267 23-66 (258)
62 PRK02261 methylaspartate mutas 67.2 10 0.00023 35.6 5.2 75 189-282 2-77 (137)
63 COG3340 PepE Peptidase E [Amin 66.8 15 0.00032 37.2 6.2 63 190-268 32-94 (224)
64 TIGR01501 MthylAspMutase methy 65.9 14 0.0003 34.7 5.6 53 213-269 11-63 (134)
65 TIGR00391 hydA hydrogenase (Ni 64.8 11 0.00025 41.1 5.5 120 490-620 70-207 (365)
66 PF07697 7TMR-HDED: 7TM-HD ext 63.4 3.2 7E-05 41.6 1.0 37 147-183 184-220 (222)
67 cd02072 Glm_B12_BD B12 binding 62.5 14 0.00029 34.5 4.9 51 213-267 9-59 (128)
68 cd00578 L-fuc_L-ara-isomerases 60.9 18 0.00039 40.8 6.6 94 191-293 1-98 (452)
69 cd02067 B12-binding B12 bindin 60.5 18 0.0004 32.5 5.4 51 214-268 10-60 (119)
70 cd03146 GAT1_Peptidase_E Type 59.5 12 0.00027 37.7 4.4 60 188-267 29-89 (212)
71 PF03575 Peptidase_S51: Peptid 58.5 12 0.00027 35.5 4.1 41 223-268 5-45 (154)
72 cd03145 GAT1_cyanophycinase Ty 57.8 16 0.00034 37.1 4.8 66 189-268 28-93 (217)
73 PF02608 Bmp: Basic membrane p 57.4 18 0.00039 38.6 5.5 81 191-283 2-83 (306)
74 PF00670 AdoHcyase_NAD: S-aden 57.1 18 0.00039 35.1 4.8 49 219-270 34-91 (162)
75 TIGR00566 trpG_papA glutamine 53.1 23 0.00049 35.0 5.0 50 216-272 8-58 (188)
76 cd01836 FeeA_FeeB_like SGNH_hy 52.8 57 0.0012 31.5 7.8 74 474-550 3-80 (191)
77 TIGR02990 ectoine_eutA ectoine 52.1 31 0.00067 35.6 6.0 87 173-284 111-206 (239)
78 cd01836 FeeA_FeeB_like SGNH_hy 51.8 34 0.00074 33.1 6.1 72 191-268 1-77 (191)
79 cd02071 MM_CoA_mut_B12_BD meth 51.8 27 0.00059 31.8 5.0 48 217-268 13-60 (122)
80 PRK05282 (alpha)-aspartyl dipe 51.6 24 0.00052 36.3 5.0 62 189-270 30-91 (233)
81 COG0698 RpiB Ribose 5-phosphat 50.6 22 0.00048 34.0 4.2 51 222-272 17-72 (151)
82 PRK10468 hydrogenase 2 small s 50.5 19 0.00041 39.4 4.2 119 492-621 70-206 (371)
83 PRK05670 anthranilate synthase 49.7 25 0.00054 34.6 4.7 49 217-272 9-58 (189)
84 cd02070 corrinoid_protein_B12- 48.4 37 0.0008 33.9 5.7 76 189-282 81-156 (201)
85 PRK15454 ethanol dehydrogenase 47.3 34 0.00074 38.0 5.8 55 222-278 68-124 (395)
86 TIGR00689 rpiB_lacA_lacB sugar 46.4 29 0.00064 33.0 4.4 51 222-272 15-69 (144)
87 PF00117 GATase: Glutamine ami 46.3 23 0.00051 34.5 3.9 49 216-270 6-54 (192)
88 PRK06895 putative anthranilate 44.4 34 0.00073 33.7 4.7 46 216-270 10-55 (190)
89 PRK12613 galactose-6-phosphate 44.3 36 0.00077 32.3 4.5 51 222-272 17-68 (141)
90 PF02502 LacAB_rpiB: Ribose/Ga 43.8 29 0.00063 32.8 3.9 52 221-272 15-70 (140)
91 TIGR01280 xseB exodeoxyribonuc 43.6 22 0.00049 29.2 2.7 30 17-46 1-30 (67)
92 cd02069 methionine_synthase_B1 43.5 43 0.00094 33.9 5.4 114 149-282 43-162 (213)
93 PRK08007 para-aminobenzoate sy 43.5 42 0.0009 33.1 5.2 49 215-270 7-55 (187)
94 TIGR01119 lacB galactose-6-pho 42.2 38 0.00082 33.2 4.5 51 222-272 17-71 (171)
95 cd04245 AAK_AKiii-YclM-BS AAK_ 41.7 41 0.00089 35.8 5.1 70 219-289 123-218 (288)
96 COG2185 Sbm Methylmalonyl-CoA 41.2 16 0.00036 34.6 1.8 80 470-565 11-90 (143)
97 PRK07649 para-aminobenzoate/an 41.2 45 0.00098 33.2 5.1 47 216-269 8-54 (195)
98 PRK06774 para-aminobenzoate sy 40.5 47 0.001 32.7 5.1 53 216-275 8-61 (191)
99 PF04392 ABC_sub_bind: ABC tra 40.2 53 0.0012 34.6 5.7 52 217-268 14-69 (294)
100 PF03711 OKR_DC_1_C: Orn/Lys/A 40.0 9.9 0.00021 35.8 0.1 52 16-74 50-101 (136)
101 TIGR02133 RPI_actino ribose 5- 39.9 46 0.001 31.8 4.6 52 221-272 16-72 (148)
102 PF10087 DUF2325: Uncharacteri 39.5 38 0.00082 29.6 3.7 65 218-284 10-75 (97)
103 PRK05571 ribose-5-phosphate is 38.9 47 0.001 31.7 4.5 50 222-271 17-71 (148)
104 PF10686 DUF2493: Protein of u 38.7 37 0.00081 28.2 3.3 43 242-284 15-57 (71)
105 COG1740 HyaA Ni,Fe-hydrogenase 37.5 53 0.0012 35.4 5.0 113 214-336 65-202 (355)
106 PF04028 DUF374: Domain of unk 36.4 77 0.0017 26.6 4.9 47 220-267 22-68 (74)
107 PRK08622 galactose-6-phosphate 35.9 54 0.0012 32.1 4.4 51 222-272 17-71 (171)
108 TIGR01378 thi_PPkinase thiamin 35.8 49 0.0011 33.2 4.4 65 216-282 45-109 (203)
109 PF00731 AIRC: AIR carboxylase 35.2 76 0.0016 30.4 5.3 58 222-284 18-77 (150)
110 PLN02335 anthranilate synthase 34.9 69 0.0015 32.6 5.4 57 216-279 27-84 (222)
111 TIGR01769 GGGP geranylgeranylg 34.0 25 0.00053 35.5 1.8 72 241-341 7-78 (205)
112 PRK14063 exodeoxyribonuclease 34.0 38 0.00083 28.6 2.7 30 16-45 4-33 (76)
113 cd01822 Lysophospholipase_L1_l 33.9 55 0.0012 30.9 4.3 84 475-561 2-88 (177)
114 PRK08306 dipicolinate synthase 33.8 70 0.0015 34.0 5.4 73 220-297 164-246 (296)
115 COG4002 Predicted phosphotrans 33.7 69 0.0015 32.3 4.8 77 173-268 122-201 (256)
116 TIGR01120 rpiB ribose 5-phosph 33.6 62 0.0013 30.8 4.4 51 222-272 16-70 (143)
117 PRK05637 anthranilate synthase 33.6 68 0.0015 32.3 5.0 47 216-270 10-56 (208)
118 PRK13010 purU formyltetrahydro 33.3 57 0.0012 34.7 4.6 75 189-266 92-177 (289)
119 PRK01175 phosphoribosylformylg 33.2 54 0.0012 34.3 4.3 43 224-273 21-63 (261)
120 PTZ00215 ribose 5-phosphate is 33.1 64 0.0014 31.0 4.4 51 222-272 19-75 (151)
121 cd01742 GATase1_GMP_Synthase T 33.1 52 0.0011 31.8 4.0 46 216-269 7-52 (181)
122 PRK09860 putative alcohol dehy 32.7 82 0.0018 34.8 5.9 49 222-270 50-100 (383)
123 PRK12615 galactose-6-phosphate 32.7 64 0.0014 31.6 4.4 51 222-272 17-71 (171)
124 PF02310 B12-binding: B12 bind 32.4 1E+02 0.0022 27.3 5.6 47 217-267 14-60 (121)
125 PF03720 UDPG_MGDP_dh_C: UDP-g 32.2 54 0.0012 29.1 3.6 54 212-266 11-74 (106)
126 PRK14069 exodeoxyribonuclease 32.2 40 0.00086 29.8 2.6 31 15-45 6-36 (95)
127 PRK14064 exodeoxyribonuclease 31.9 38 0.00081 28.6 2.3 29 17-45 6-34 (75)
128 PRK06131 dihydroxy-acid dehydr 31.5 96 0.0021 36.1 6.2 114 172-297 20-151 (571)
129 PF13507 GATase_5: CobB/CobQ-l 31.5 53 0.0012 34.3 3.9 62 190-274 1-62 (259)
130 PRK13017 dihydroxy-acid dehydr 31.1 1.1E+02 0.0025 35.7 6.7 114 172-297 28-160 (596)
131 COG1731 Archaeal riboflavin sy 30.9 68 0.0015 29.9 3.9 51 508-562 29-81 (154)
132 TIGR00655 PurU formyltetrahydr 30.9 74 0.0016 33.7 4.9 74 189-266 83-168 (280)
133 PRK13011 formyltetrahydrofolat 30.7 79 0.0017 33.6 5.1 79 189-270 88-177 (286)
134 PRK00977 exodeoxyribonuclease 30.6 47 0.001 28.3 2.7 32 15-46 8-39 (80)
135 TIGR02370 pyl_corrinoid methyl 30.4 87 0.0019 31.2 5.1 76 189-282 83-158 (197)
136 PRK14068 exodeoxyribonuclease 30.3 46 0.001 28.1 2.6 31 16-46 5-35 (76)
137 PRK09273 hypothetical protein; 30.3 67 0.0014 32.5 4.1 51 222-272 21-77 (211)
138 TIGR02133 RPI_actino ribose 5- 29.8 20 0.00042 34.3 0.3 96 509-621 26-125 (148)
139 TIGR00689 rpiB_lacA_lacB sugar 29.5 17 0.00037 34.5 -0.1 113 490-621 6-122 (144)
140 cd07995 TPK Thiamine pyrophosp 29.2 65 0.0014 32.3 4.0 65 216-282 49-113 (208)
141 TIGR01118 lacA galactose-6-pho 29.2 89 0.0019 29.6 4.6 50 222-271 17-68 (141)
142 KOG2644 3'-phosphoadenosine 5' 28.9 15 0.00031 38.7 -0.8 72 210-282 16-87 (282)
143 COG1740 HyaA Ni,Fe-hydrogenase 28.4 2.3E+02 0.0051 30.6 7.9 24 595-618 180-203 (355)
144 PRK14067 exodeoxyribonuclease 28.2 45 0.00098 28.5 2.2 31 15-45 5-35 (80)
145 COG0129 IlvD Dihydroxyacid deh 28.1 1.7E+02 0.0037 34.0 7.4 116 171-299 24-162 (575)
146 PRK08621 galactose-6-phosphate 28.0 98 0.0021 29.4 4.7 51 222-272 17-69 (142)
147 PF00885 DMRL_synthase: 6,7-di 27.6 48 0.001 31.5 2.5 75 224-305 26-108 (144)
148 COG0698 RpiB Ribose 5-phosphat 27.5 24 0.00052 33.8 0.5 93 509-619 26-123 (151)
149 PRK11366 puuD gamma-glutamyl-g 27.3 1.4E+02 0.0031 30.9 6.3 68 189-271 6-75 (254)
150 PRK10468 hydrogenase 2 small s 27.0 71 0.0015 35.1 4.0 57 214-271 65-124 (371)
151 PRK12613 galactose-6-phosphate 26.8 23 0.00049 33.6 0.2 96 509-621 26-121 (141)
152 COG0512 PabA Anthranilate/para 26.0 69 0.0015 31.9 3.4 62 215-283 9-71 (191)
153 PRK14066 exodeoxyribonuclease 25.9 57 0.0012 27.5 2.4 29 17-45 4-32 (75)
154 PF00465 Fe-ADH: Iron-containi 25.8 73 0.0016 34.8 3.9 55 221-277 39-95 (366)
155 TIGR02638 lactal_redase lactal 25.6 71 0.0015 35.2 3.8 55 221-277 47-103 (379)
156 COG3453 Uncharacterized protei 25.3 1.1E+02 0.0025 28.2 4.3 68 167-254 14-86 (130)
157 PRK10624 L-1,2-propanediol oxi 25.2 83 0.0018 34.7 4.3 55 221-277 48-104 (382)
158 PRK01372 ddl D-alanine--D-alan 25.2 1.4E+02 0.003 31.3 5.9 78 190-284 4-82 (304)
159 PRK03094 hypothetical protein; 24.8 75 0.0016 27.1 2.9 34 220-266 10-43 (80)
160 PF03698 UPF0180: Uncharacteri 24.8 66 0.0014 27.5 2.6 34 221-267 11-44 (80)
161 TIGR02853 spore_dpaA dipicolin 24.0 97 0.0021 32.8 4.3 73 220-297 163-245 (287)
162 TIGR00888 guaA_Nterm GMP synth 24.0 1.4E+02 0.003 29.2 5.2 47 216-270 7-53 (188)
163 TIGR01120 rpiB ribose 5-phosph 23.8 27 0.00059 33.2 0.1 113 490-621 7-123 (143)
164 cd01745 GATase1_2 Subgroup of 23.8 1.2E+02 0.0026 29.8 4.7 52 215-272 16-67 (189)
165 PF03575 Peptidase_S51: Peptid 23.7 71 0.0015 30.3 3.0 33 509-547 13-45 (154)
166 PF13433 Peripla_BP_5: Peripla 23.6 93 0.002 34.2 4.1 49 217-266 149-197 (363)
167 cd07103 ALDH_F5_SSADH_GabD Mit 23.2 65 0.0014 36.2 3.0 52 220-273 160-211 (451)
168 TIGR00391 hydA hydrogenase (Ni 23.0 79 0.0017 34.7 3.4 58 214-272 67-127 (365)
169 COG1419 FlhF Flagellar GTP-bin 22.9 1.1E+02 0.0024 34.1 4.6 85 168-272 208-296 (407)
170 cd03693 EF1_alpha_II EF1_alpha 22.8 1.7E+02 0.0037 25.1 4.9 63 82-166 22-89 (91)
171 cd08181 PPD-like 1,3-propanedi 22.7 1E+02 0.0022 33.6 4.4 55 221-277 44-100 (357)
172 cd08550 GlyDH-like Glycerol_de 22.6 94 0.002 33.7 4.0 57 220-278 38-95 (349)
173 COG1731 Archaeal riboflavin sy 22.5 1.8E+02 0.0039 27.2 5.1 66 216-284 14-82 (154)
174 PRK08857 para-aminobenzoate sy 22.4 1.3E+02 0.0029 29.6 4.7 50 216-272 8-58 (193)
175 PRK00758 GMP synthase subunit 22.4 1.7E+02 0.0037 28.4 5.5 44 216-269 8-52 (184)
176 PTZ00215 ribose 5-phosphate is 22.4 32 0.0007 33.0 0.3 95 509-621 30-128 (151)
177 PRK10528 multifunctional acyl- 22.3 1.4E+02 0.003 29.2 4.9 81 475-561 12-95 (191)
178 TIGR00640 acid_CoA_mut_C methy 22.3 39 0.00084 31.5 0.8 76 471-562 2-77 (132)
179 PRK07765 para-aminobenzoate sy 22.3 1.5E+02 0.0033 29.8 5.2 48 217-269 10-57 (214)
180 PF13407 Peripla_BP_4: Peripla 22.3 1.5E+02 0.0032 29.8 5.2 63 219-281 16-78 (257)
181 PRK09426 methylmalonyl-CoA mut 22.1 1.2E+02 0.0026 36.6 5.0 63 189-268 581-643 (714)
182 TIGR01119 lacB galactose-6-pho 21.9 31 0.00067 33.8 0.1 92 509-617 26-120 (171)
183 PF03129 HGTP_anticodon: Antic 21.8 98 0.0021 26.2 3.2 56 193-266 2-60 (94)
184 cd04244 AAK_AK-LysC-like AAK_A 21.7 1.9E+02 0.0041 30.8 6.0 70 219-289 129-228 (298)
185 PRK08622 galactose-6-phosphate 21.6 31 0.00066 33.8 -0.0 91 509-616 26-119 (171)
186 CHL00101 trpG anthranilate syn 21.5 1.6E+02 0.0035 28.9 5.2 48 216-270 8-55 (190)
187 COG1722 XseB Exonuclease VII s 21.4 70 0.0015 27.4 2.1 28 18-45 11-38 (81)
188 cd08194 Fe-ADH6 Iron-containin 21.4 1.2E+02 0.0026 33.3 4.6 54 222-277 42-97 (375)
189 cd08182 HEPD Hydroxyethylphosp 21.3 1.2E+02 0.0027 33.0 4.7 53 223-277 40-94 (367)
190 cd01835 SGNH_hydrolase_like_3 21.2 1E+02 0.0022 29.7 3.7 76 475-550 3-82 (193)
191 PRK12615 galactose-6-phosphate 20.9 32 0.0007 33.7 -0.0 91 509-616 26-119 (171)
192 cd01822 Lysophospholipase_L1_l 20.8 2E+02 0.0044 27.0 5.5 70 194-268 2-74 (177)
193 PF02875 Mur_ligase_C: Mur lig 20.8 2.1E+02 0.0046 24.1 5.2 54 216-269 20-82 (91)
194 cd04501 SGNH_hydrolase_like_4 20.7 1.7E+02 0.0037 27.9 5.1 81 476-561 3-83 (183)
195 cd01821 Rhamnogalacturan_acety 20.7 1.5E+02 0.0033 28.7 4.8 69 195-268 3-75 (198)
196 cd08185 Fe-ADH1 Iron-containin 20.6 1.2E+02 0.0026 33.4 4.3 56 221-278 44-101 (380)
197 PRK00843 egsA NAD(P)-dependent 20.6 1.2E+02 0.0025 33.1 4.2 55 220-278 50-105 (350)
198 PRK00061 ribH 6,7-dimethyl-8-r 20.6 1.7E+02 0.0037 28.1 4.9 77 224-305 35-117 (154)
199 PF02826 2-Hacid_dh_C: D-isome 20.5 1.4E+02 0.003 29.0 4.3 60 190-268 36-101 (178)
200 cd06334 PBP1_ABC_ligand_bindin 20.5 1.5E+02 0.0032 32.0 5.0 66 190-268 140-205 (351)
201 COG0528 PyrH Uridylate kinase 20.3 97 0.0021 31.9 3.2 69 219-289 83-159 (238)
202 cd08178 AAD_C C-terminal alcoh 20.1 1.1E+02 0.0024 33.8 4.1 56 221-278 39-96 (398)
No 1
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=100.00 E-value=3.9e-129 Score=1111.93 Aligned_cols=655 Identities=79% Similarity=1.190 Sum_probs=590.7
Q ss_pred ccccccHHHHHHHHHHhhhcCCCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCCCCCCceeeecccCCCc
Q 005900 13 QEKMISAEEALQKVLSVAQRLPPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPGEYPVITESRAGNDG 92 (671)
Q Consensus 13 ~~~~is~~eA~~~i~~~~~~~~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~~~~l~v~g~~~aG~~~ 92 (671)
..+|+|++||++++++.+.+.+.|+|||.+|+||||||||+|++|+|+||+|+||||||+++|.+..|+++++++||+.+
T Consensus 4 ~~~mis~~eA~~~i~~~~~~~~~e~V~l~~A~GRVLAedv~A~~d~P~fd~SamDGYAv~~~d~~~~l~v~g~i~AG~~~ 83 (659)
T PLN02699 4 KTEMISVEEALSIVLSVAARLSPVIVPLHEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPGEYPVITESRAGNDG 83 (659)
T ss_pred CCCCCCHHHHHHHHHhcCCCCCcEEEEHHHcCCCceeeeeecCCCCCCCcccccceeEEecccCCCcceeeeeEcCCCCC
Confidence 45799999999999999888888999999999999999999999999999999999999999998899999999999864
Q ss_pred eEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccCcccccc
Q 005900 93 IGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERIGAS 172 (671)
Q Consensus 93 ~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l~p~ 172 (671)
....|.+|+|+||||||+||+|||||||+|+++..++..+++..|.|.+++++|+|||++|||+++||+|+++|++|+|.
T Consensus 84 ~~~~l~~G~avrI~TGa~iP~GaDaVI~~E~~~~~~~~~~~~~~I~i~~~v~~g~nIr~~Ged~~~G~~ll~~G~~l~p~ 163 (659)
T PLN02699 84 LGVTLTPGTVAYVTTGGPIPDGADAVVQVEDTEVVEDPLDGSKRVRILSQASKGQDIRPVGCDIEKDAKVLKAGERLGAS 163 (659)
T ss_pred CCcccCCCcEEEEccCCCCCCCCCEEEEEEEEEecCCCcCccceEEECCCCCCCCCccccccccCCCCEEECCcCCCCHH
Confidence 34579999999999999999999999999999764321112246899999999999999999999999999999999999
Q ss_pred hhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhh
Q 005900 173 EIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLD 252 (671)
Q Consensus 173 ~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~ 252 (671)
+|++||++|+.+|+||++|||+||+|||||+++++.++..|+|+|+|+++|.++|+++|+++..+++++||++.|+++|+
T Consensus 164 ~i~lLas~Gi~~V~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~ 243 (659)
T PLN02699 164 EIGLLATVGVTMVKVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILD 243 (659)
T ss_pred HHHHHHHCCCCeEEeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHH
Confidence 99999999999999999999999999999999987546789999999999999999999999999999999999999999
Q ss_pred hhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEE
Q 005900 253 NAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVC 332 (671)
Q Consensus 253 ~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~ 332 (671)
+++++++|+||||||+|+|++|+++++++++|+++||+++||||||+++|.+++++..+. .++++||+|||||.|++++
T Consensus 244 ~a~~~~~DlvItTGGts~G~~D~v~~~l~~~G~i~f~gv~~kPGkp~~~a~~~~~~~~g~-~~~~~v~gLPGnP~sa~~~ 322 (659)
T PLN02699 244 EAISSGVDILLTSGGVSMGDRDFVKPLLEKRGTVYFSKVLMKPGKPLTFAEIDAKSAPSN-SKKMLAFGLPGNPVSCLVC 322 (659)
T ss_pred HhhcCCCCEEEECCCCCCCCCccHHHHHHhcCcceEEEEEecCCCceeeEEecccccccc-cCCEEEEECCCCHHHHHHH
Confidence 987545999999999999999999999999999999999999999999999964221111 1246999999999999999
Q ss_pred EeEeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhccccccccc
Q 005900 333 FHLYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANAL 412 (671)
Q Consensus 333 ~~~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~~an~l 412 (671)
|++||.|+|++|+|+....++.++++|.+++.++.++++|+|+++.+..++|...+.+.+.+.++|+|+++++|.+||||
T Consensus 323 f~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~S~~i~sl~~an~l 402 (659)
T PLN02699 323 FNLFVVPAIRYLAGWSNPHLLRVQARLREPIKLDPVRPEFHRAIIRWKLNDGSGNPGFVAESTGHQMSSRLLSMKSANAL 402 (659)
T ss_pred HHHHHHHHHHHHcCCCCCCCccEEEEeCCcccCCCCCcEEEEEEEEEecCCCccccceEEEeCCCCCcHHHHHHHhCCEE
Confidence 99999999999999865555568999999999999999999998864212342122367788889999999999999999
Q ss_pred cccccccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccccCCCCCCC
Q 005900 413 LELPATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVASGAGPDRS 492 (671)
Q Consensus 413 i~iP~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~~G~~~D~n 492 (671)
+++|++.+.+++|+.|++++|+.+...+.|++..+++..++.-|.-++ ..+....+++|+||++|||+..|...|.+
T Consensus 403 i~ip~~~~~~~~G~~V~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~rvaIIt~sde~~~~~~~D~s 479 (659)
T PLN02699 403 LELPATGNVLSAGTSVSAIIISDISSKSLDESSTSSDPHSSRHGSTSK---SIEAQNPEVKVAILTVSDTVSSGAGPDRS 479 (659)
T ss_pred EEECCCCCccCCCCEEEEEEecccccCCCCCCCccccccccccccccc---ccccccCCcEEEEEEECCcccCCCccccc
Confidence 999999999999999999999999999999999888777777665444 23344566899999999999999999999
Q ss_pred CCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeee
Q 005900 493 GPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLY 572 (671)
Q Consensus 493 ~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e 572 (671)
++.+.+++.++++++.|+++..+.+++||++.|+++|+++++.+++|+||||||+|++++|+|++|+.++++|++||+.+
T Consensus 480 g~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGts~g~~D~tpeal~~l~~k~~PG~~~ 559 (659)
T PLN02699 480 GPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGTGFTPRDVTPEATKEVIQKETPGLLY 559 (659)
T ss_pred chHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCccCCCCcchHHHHHHHHhccCCcHHH
Confidence 99888888876555448999999999999999999999985335799999999999999999999999999999999999
Q ss_pred eeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHHHHHHHhhcCcccccCCCCCCCCCc-cccccc
Q 005900 573 VMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHPRHVPHSQA-VPVDTW 651 (671)
Q Consensus 573 ~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L~~~~~~l~g~~~~~~~~~~~~~~~-~~~~~~ 651 (671)
.+++++++++|++++||+.+|++++++||+|||||.+++.+|+.|+|.|.|+++++.|..+..|++.-.+.+. .|+|+|
T Consensus 560 ~~~~~~~~~~Pg~~lSR~~~g~~~~~lv~~LPG~P~aa~~~~~~i~p~l~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~ 639 (659)
T PLN02699 560 VMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHPRHIPHAQATDPVDTW 639 (659)
T ss_pred HHHHhhhcccCCceeeeeEEEEECCEEEEECCCCHHHHHHHHHHHHHhHHHHHHHhcCCCcccCCCCCChhhccCchhhH
Confidence 9999999999999999999999999999999999999999999999999999999999988889988777776 899999
Q ss_pred ccceeecCCCCCCCCccCCC
Q 005900 652 EHSYKMSSGGGTEPSCSCSH 671 (671)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~ 671 (671)
+++|+.+|+-|.+++|||||
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~ 659 (659)
T PLN02699 640 ERSYKAASGQGGEPGCSCSH 659 (659)
T ss_pred HHHHhhhcccCCCCCCCCCC
Confidence 99999999999999999999
No 2
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-94 Score=781.87 Aligned_cols=395 Identities=43% Similarity=0.674 Sum_probs=374.9
Q ss_pred cccccHHHHHHHHHHhhhcCC-CcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCCCC--CCceeeecccCC
Q 005900 14 EKMISAEEALQKVLSVAQRLP-PVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPG--EYPVITESRAGN 90 (671)
Q Consensus 14 ~~~is~~eA~~~i~~~~~~~~-~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~~~--~l~v~g~~~aG~ 90 (671)
..++|++||+++++++..++. +|+|+|.+|+||+|||||+|++|+|+||+|+||||||+++|+.. .|+|+|++.||+
T Consensus 4 ~~l~~veeA~~~l~~~~~~~~~~e~v~l~~a~GrvLAedi~A~~d~P~fd~samDGyAvr~~D~~~~~~l~V~g~i~aG~ 83 (404)
T COG0303 4 KGLLPVEEALEILLAHASPLGETETVPLEEALGRVLAEDVVAPLDVPPFDRSAMDGYAVRAEDTDGAATLRVVGEIAAGE 83 (404)
T ss_pred ccCCCHHHHHHHHHhcccCCCCceEEEHHHcCCCeeehhhccCCCCCCCcccccceeEEchhccCCceeEEEEEEecCCC
Confidence 459999999999999999985 89999999999999999999999999999999999999999875 799999999997
Q ss_pred CceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccCcccc
Q 005900 91 DGIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERIG 170 (671)
Q Consensus 91 ~~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l~ 170 (671)
.+ ...+++|+|+||||||++|+|||||||+|++...++ .|.|++++.+|+|||++|||+++|++|+++|++|+
T Consensus 84 ~~-~~~v~~geavrI~TGA~lP~gaDaVV~~E~~~~~~~------~v~i~~~~~~g~nv~~~Gedi~~G~vil~~G~~L~ 156 (404)
T COG0303 84 VP-DLEVGPGEAVRIMTGAPLPEGADAVVMVEDTREEGD------DVRILRAVKPGQNVRRAGEDVAKGDVILRAGTRLT 156 (404)
T ss_pred CC-CcccCCCeEEEEeCCCCCCCCCCEEEEEEEEEecCC------cEEEeccCCCCcccccccccccCCCEeecCCCCcC
Confidence 54 468999999999999999999999999999877653 59999999999999999999999999999999999
Q ss_pred cchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHH
Q 005900 171 ASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKT 250 (671)
Q Consensus 171 p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~ 250 (671)
|+++++||++|+.+|+|||||||+||||||||++++++ +.+|||||||+++|.++|+++|++++++++++||+++++++
T Consensus 157 p~~i~llas~Gi~~V~V~rkprV~IisTGdELv~~~~~-l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~ 235 (404)
T COG0303 157 PAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQP-LEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREA 235 (404)
T ss_pred HHHHHHHHhCCCceEEEecCCEEEEEecCccccCCCCC-CCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999976 89999999999999999999999999999999999999999
Q ss_pred hhhhhcccccEEEecCCcccCCccchhhhhc-ccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeE
Q 005900 251 LDNAFSAGIDILLTSGGVSMGDKDFVKPLLQ-KKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSC 329 (671)
Q Consensus 251 l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~-~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa 329 (671)
|++++++ ||+||||||+|+|++||++++++ ++|+++|||++||||||+.||.++ +++||+|||||+||
T Consensus 236 i~~a~~~-~DviItsGG~SvG~~D~v~~~l~~~lG~v~~~gia~kPGkP~~~g~~~----------~~~v~gLPGnPvSa 304 (404)
T COG0303 236 IEKALSE-ADVIITSGGVSVGDADYVKAALERELGEVLFHGVAMKPGKPTGLGRLG----------GKPVFGLPGNPVSA 304 (404)
T ss_pred HHHhhhc-CCEEEEeCCccCcchHhHHHHHHhcCCcEEEEeeeecCCCceEEEEEC----------CcEEEECCCCHHHH
Confidence 9999985 99999999999999999999999 699999999999999999999997 46699999999999
Q ss_pred EEEEeEeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhcccccc
Q 005900 330 IVCFHLYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSA 409 (671)
Q Consensus 330 ~~~~~~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~~a 409 (671)
+++|++||+|+|++++|.+...+..++++|..++++..+|++|+|+++.. ++|. +.++|++ ++||++++|++|
T Consensus 305 lv~f~~~v~p~l~~~~g~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~--~~g~----~~a~p~~-~~Sg~~~sl~~a 377 (404)
T COG0303 305 LVNFELFVRPLLRKLLGLKATAPRKVKARLLADIPSKPGRREFLRVRLER--DNGR----LLAEPLG-QGSGLLSSLAEA 377 (404)
T ss_pred HHHHHHHHHHHHHHhcCCccccCceEEEEecccccCCCCcceEEEEEEec--CCce----EEEEECC-CCCHHHHHHhhC
Confidence 99999999999999999887767788999999999999999999999876 3555 8889988 899999999999
Q ss_pred ccccccccccceecccceEEEEEEe
Q 005900 410 NALLELPATGSVISAGTLVSAIVIS 434 (671)
Q Consensus 410 n~li~iP~g~~~i~aG~~V~v~ll~ 434 (671)
|||+++|++.+.+++|+.|++++|.
T Consensus 378 dg~i~ip~~~~~~~~Ge~V~v~~~~ 402 (404)
T COG0303 378 DGLIVIPEGVEGVEAGEEVEVLLLR 402 (404)
T ss_pred ceEEEeCCCCccccCCCEEEEEEec
Confidence 9999999999999999999999986
No 3
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=2.4e-91 Score=763.45 Aligned_cols=398 Identities=35% Similarity=0.546 Sum_probs=369.1
Q ss_pred ccccHHHHHHHHHHhhhcC-CCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCC--CCCCceeeecccCCC
Q 005900 15 KMISAEEALQKVLSVAQRL-PPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDG--PGEYPVITESRAGND 91 (671)
Q Consensus 15 ~~is~~eA~~~i~~~~~~~-~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~--~~~l~v~g~~~aG~~ 91 (671)
.|+|++||+++++++++++ ..|+|||.+|+||||||||+|++|+|+||+|+||||||+++|+ +..|++++++.||+.
T Consensus 6 ~~is~~eAl~~i~~~~~~~~~~e~v~l~~a~grvlAedv~A~~~~P~f~~SamDGyAv~~~d~~~~~~l~v~g~i~aG~~ 85 (411)
T PRK10680 6 GLMSLETALTEMLSRVTPLTATETLPLVQCFGRITASDIVSPLDVPGFDNSAMDGYAVRLADLASGQPLPVAGKAFAGQP 85 (411)
T ss_pred CCccHHHHHHHHHhhCCCCCCcEEEEHHHhCCChhheeeecCCCCCCCcccccccEEEeehhcCCCceeeEEEEEcCCCC
Confidence 4999999999999998887 4799999999999999999999999999999999999999996 346899999999986
Q ss_pred ceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccCccccc
Q 005900 92 GIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERIGA 171 (671)
Q Consensus 92 ~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l~p 171 (671)
+ ...+.+|+|+||||||+||+|||||||+|+++..+ +.|.|.+++.+|+|||++|||+++||+|+++|++|+|
T Consensus 86 ~-~~~~~~g~av~I~TGa~vP~gaDaVv~~E~~~~~~------~~i~i~~~~~~g~nIr~~Ged~~~G~~ll~~G~~l~p 158 (411)
T PRK10680 86 F-HGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQTD------DGVRFTAEVRSGQNIRRRGEDISQGAVVFPAGTRLTT 158 (411)
T ss_pred C-CcccCCCeEEEEecCCcCCCCCCEEEEEEEEEEcC------CEEEECCCCCCCCCccccccccCCCCEEECCcCCCCH
Confidence 5 45899999999999999999999999999997643 3689999999999999999999999999999999999
Q ss_pred chhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHh
Q 005900 172 SEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTL 251 (671)
Q Consensus 172 ~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l 251 (671)
.+|++|+++|+.+|+||++|||+||+|||||++++++ +.+|||+|+|+++|.++|+++|+++..+++++||+++|+++|
T Consensus 159 ~~i~lLas~G~~~V~V~~~prV~iistGdEl~~~~~~-~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l 237 (411)
T PRK10680 159 AELPVLASLGIAEVPVVRKVRVALFSTGDELQLPGQP-LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAF 237 (411)
T ss_pred HHHHHHHhCCCCeEEecCCCEEEEEccCCeEeCCCCC-CCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHH
Confidence 9999999999999999999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred hhhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEE
Q 005900 252 DNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIV 331 (671)
Q Consensus 252 ~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~ 331 (671)
+++.+ +||+||||||+|+|++||++++++++|+++||+++||||||++||.++ +++||+|||||.|+++
T Consensus 238 ~~a~~-~~DlvIttGG~S~G~~D~~~~al~~lG~~~f~~v~~kPGkp~~~g~~~----------~~~v~gLPGnP~sa~~ 306 (411)
T PRK10680 238 IEADS-QADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLS----------NSWFCGLPGNPVSAAL 306 (411)
T ss_pred HHhcc-CCCEEEEcCCCCCCCcchHHHHHHhcCcEEEEEEEEecCcceEEEEEC----------CeEEEECCCCHHHHHH
Confidence 99875 599999999999999999999999999999999999999999999996 5899999999999999
Q ss_pred EEeEeeechhhcccCCCCCccc-ccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhccccccc
Q 005900 332 CFHLYIVPAIRHLSGWANPHLL-RVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSAN 410 (671)
Q Consensus 332 ~~~~~v~P~L~~l~G~~~~~~~-~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~~an 410 (671)
+|+.|+.|+|++|+|...+... .++++|..++.++.++++|+|+++... .+|. +++.+.++|+|+++++|++||
T Consensus 307 ~~~~~v~P~l~~l~g~~~~~~~~~~~a~l~~~~~~~~~~~~f~r~~l~~~-~~G~----~~~~~~~~~~s~~l~sl~~an 381 (411)
T PRK10680 307 TFYQLVQPLLAKLSGNTASGLPPRQRVRTASRLKKTPGRLDFQRGILQRN-ADGE----LEVTTTGHQGSHIFSSFSLGN 381 (411)
T ss_pred HHHHHHHHHHHHHcCCCCcCCCccEEEEeCCCccCCCCCcEEEEEEEEEc-CCCe----EEEEECCCCCCHHHHHHHhCC
Confidence 9999999999999997653322 578999999999999999999988642 2454 667788889999999999999
Q ss_pred cccccccccceecccceEEEEEEecc
Q 005900 411 ALLELPATGSVISAGTLVSAIVISDI 436 (671)
Q Consensus 411 ~li~iP~g~~~i~aG~~V~v~ll~~l 436 (671)
||++||++.+.+++|+.|++++++.|
T Consensus 382 ~li~ip~~~~~~~~G~~V~v~~~~~~ 407 (411)
T PRK10680 382 CFIVLERERGNVEVGEWVEVEPFNAL 407 (411)
T ss_pred EEEEECCCCCccCCCCEEEEEEehHh
Confidence 99999999999999999999988644
No 4
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=100.00 E-value=2e-90 Score=770.36 Aligned_cols=395 Identities=34% Similarity=0.488 Sum_probs=367.2
Q ss_pred ccccccHHHHHHHHHHhhhcC-CCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCCCCCCceeeecccCCC
Q 005900 13 QEKMISAEEALQKVLSVAQRL-PPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPGEYPVITESRAGND 91 (671)
Q Consensus 13 ~~~~is~~eA~~~i~~~~~~~-~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~~~~l~v~g~~~aG~~ 91 (671)
..+|+|++||++++++...+. +.|+|+|.||+||||||||+|++|+|+|++|+||||||+++|+|..|+++|++.||+.
T Consensus 7 ~~~l~s~eEAl~~ll~~~~~~~~~E~V~l~eAlGRVLAedI~A~~d~P~f~~SAMDGYAVrs~dtp~~L~v~g~i~AG~~ 86 (546)
T PRK14497 7 DESLYSIDEAIKVFLSSLNFKPKIVKVEVKDSFGYVSAEDLMSPIDYPPFSRSTVDGYALKSSCTPGEFKVIDKIGIGEF 86 (546)
T ss_pred cCCCCCHHHHHHHHHhcCCCCCCeEEEEHHHhCCCcccceEEcCCCCCCCCCccccEEEEEecccCCceEEeeEEcCCCC
Confidence 346899999999999887764 5799999999999999999999999999999999999999999999999999999986
Q ss_pred ceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccCccccc
Q 005900 92 GIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERIGA 171 (671)
Q Consensus 92 ~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l~p 171 (671)
+ ...+.+|+|++||||++||+|||||||+|+++..++ +.|.|.+++.+|+|||++|||+++||+|+++|++|+|
T Consensus 87 ~-~~~l~~GeAv~I~TGaplP~GaDAVV~vE~t~~~~~-----~~I~I~~~v~pg~nIr~~GeDi~~Gelll~~G~~L~p 160 (546)
T PRK14497 87 K-EIHIKECEAVEVDTGSMIPMGADAVIKVENTKVING-----NFIKIDKKINFGQNIGWIGSDIPKGSIILRKGEVISH 160 (546)
T ss_pred C-CcccCCCceEEeccCCCCCCCCCEEEEhhheEecCC-----CEEEECCCCCCCCCccccccccCCCCEEECCCCCCCH
Confidence 5 458999999999999999999999999999986433 4789999999999999999999999999999999999
Q ss_pred chhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHh
Q 005900 172 SEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTL 251 (671)
Q Consensus 172 ~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l 251 (671)
.+||+|+++|+.+|+||++|||+||+|||||++++++ +.+|||||+|+++|.++|+++|+++..+++++||++.|+++|
T Consensus 161 ~~IglLas~Gi~~V~V~~rprV~IisTGdELv~pg~~-l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l 239 (546)
T PRK14497 161 EKIGLLASLGISSVKVYEKPKIYLIATGDELVEPGNS-LSPGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEI 239 (546)
T ss_pred HHHHHHHhCCCCEEeeccCCEEEEEEcCCcccCCCCC-CCCCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHH
Confidence 9999999999999999999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred hhhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEE
Q 005900 252 DNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIV 331 (671)
Q Consensus 252 ~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~ 331 (671)
+++++ +||+||||||+|+|++||++++++++|+++|||++||||||+++|.++ +++||+|||||.||++
T Consensus 240 ~~al~-~~DlVIttGGtS~G~~D~~~~al~~lG~v~f~GV~ikPGKP~~~g~~~----------gkpV~gLPG~P~Sa~v 308 (546)
T PRK14497 240 KRAIS-VADVLILTGGTSAGEKDFVHQAIRELGNIIVHGLKIKPGKPTILGIVD----------GKPVIGLPGNIVSTMV 308 (546)
T ss_pred HHhhh-cCCEEEEcCCccCCCCccHHHHHhhcCcEEEcceeecCCCcEEEEEEC----------CEEEEEcCCCHHHHHH
Confidence 99987 599999999999999999999999999999999999999999999996 5899999999999999
Q ss_pred EEeEeeechhhcccCCCC--CcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhcccccc
Q 005900 332 CFHLYIVPAIRHLSGWAN--PHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSA 409 (671)
Q Consensus 332 ~~~~~v~P~L~~l~G~~~--~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~~a 409 (671)
+|++||.|+|++|+|... +..+.++|+|..++.++.+|++|+|+++.. .+|. +.+.|+. ++|+++++|++|
T Consensus 309 ~f~~fV~P~L~~l~G~~~~~~~~~~v~a~l~~~i~s~~gr~~fv~v~l~~--~~g~----~~a~Pl~-~gSg~issL~~A 381 (546)
T PRK14497 309 VLNMVILEYLKSLYPSRKEILGLGKIKARLALRVKADEHRNTLIPVYLFK--SDNS----YYALPVP-FDSYMVGTFSLT 381 (546)
T ss_pred HHHHHHHHHHHHhcCCCcccCCCceEEEEeCCccCCCCCceEEEEEEEEe--cCCE----EEEEecC-CCcHHHHHHHhC
Confidence 999999999999999432 234468999999999999999999998765 3454 7778886 589999999999
Q ss_pred ccccccccccceecccceEEEEEE
Q 005900 410 NALLELPATGSVISAGTLVSAIVI 433 (671)
Q Consensus 410 n~li~iP~g~~~i~aG~~V~v~ll 433 (671)
|||+++|++.+ +++|+.|++++|
T Consensus 382 dG~i~ip~~~~-~~~Ge~V~V~l~ 404 (546)
T PRK14497 382 DGYIMLGPNEE-IEEGKEVEVDLK 404 (546)
T ss_pred CEEEEECCCCC-cCCCCEEEEEEE
Confidence 99999999975 999999999977
No 5
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=2.4e-89 Score=748.59 Aligned_cols=392 Identities=33% Similarity=0.469 Sum_probs=362.0
Q ss_pred cccccHHHHHHHHHHhhhcC-CCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCC--CCCCcee-eecccC
Q 005900 14 EKMISAEEALQKVLSVAQRL-PPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDG--PGEYPVI-TESRAG 89 (671)
Q Consensus 14 ~~~is~~eA~~~i~~~~~~~-~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~--~~~l~v~-g~~~aG 89 (671)
..|+|++||+++++++..+. ..|+|+|.||+||||||||+|++|+|+||+|+||||||+++|+ +..|+++ |++.||
T Consensus 20 ~~~~s~~eA~~~i~~~~~~~~~~e~v~l~~A~grvlAedv~a~~d~P~f~~SamDGyAv~~~d~~~~~~l~v~~g~i~AG 99 (419)
T PRK14690 20 VDWTPVDTALDLLRARLGPVTDIKELDLSDALGHVLAHDAVALRSNPPQANSAVDGYGFAGAAPEGAQVLPLIEGRAAAG 99 (419)
T ss_pred CCcCCHHHHHHHHHhcCCCCCCeEEEEHHHhCCCceeeeeecCCCCCCCccccccceEEecccccCCceeEeeeeEECCC
Confidence 35999999999999988776 6899999999999999999999999999999999999999886 3357876 999999
Q ss_pred CCceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccCccc
Q 005900 90 NDGIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERI 169 (671)
Q Consensus 90 ~~~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l 169 (671)
+.+ ...+.+|+|+||||||+||+|||||||+|+++..+ +.|.|.+++.+|+|||++|||+++||+|+++|++|
T Consensus 100 ~~~-~~~~~~G~av~I~TGa~lP~gaDaVV~~E~~~~~~------~~i~i~~~~~~g~nIr~~Ged~~~G~~ll~~G~~l 172 (419)
T PRK14690 100 VPF-SGRVPEGMALRILTGAALPEGVDTVVLEEDVAGDG------HRIAFHGPLKMGANTRKAGEDVIAGDVALPAGRRL 172 (419)
T ss_pred CCC-CcccCCCcEEEEcCCCCCCCCCCEEEEEEEEEeCC------CEEEECCCCCCCCCccccccccCCCCEEECCCCCC
Confidence 865 45799999999999999999999999999997643 36999999999999999999999999999999999
Q ss_pred ccchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHH
Q 005900 170 GASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK 249 (671)
Q Consensus 170 ~p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~ 249 (671)
+|.+|++||++|+.+|+||++|||+||+|||||+++++. +..|+|+|+|+++|.++|+++|+++..+++++||++.|++
T Consensus 173 ~p~~i~~Las~G~~~V~V~~~prV~IisTGdEl~~~g~~-~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~ 251 (419)
T PRK14690 173 TPADLALLSAVGLTRVSVRRPLRVAVLSTGDELVEPGAL-AEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAA 251 (419)
T ss_pred CHHHHHHHHhCCCCeeEeecCCEEEEEEccccccCCCCC-CCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHH
Confidence 999999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred HhhhhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeE
Q 005900 250 TLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSC 329 (671)
Q Consensus 250 ~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa 329 (671)
+|+++++ ++|+||||||+|+|++|+++++++++|+++||+++||||||++||.++ +++||+|||||.||
T Consensus 252 ~l~~a~~-~~DlIItTGG~S~G~~D~v~~~l~~~G~~~~~~v~mkPGkp~~~~~~~----------~~pv~gLPGnP~aa 320 (419)
T PRK14690 252 RLDRAAA-EADVILTSGGASAGDEDHVSALLREAGAMQSWRIALKPGRPLALGLWQ----------GVPVFGLPGNPVAA 320 (419)
T ss_pred HHHHhCc-cCCEEEEcCCccCCCcchHHHHHHhcCCEEEcceeecCCCceEEEEEC----------CeEEEECCCCHHHH
Confidence 9999986 599999999999999999999999999999999999999999999996 58999999999999
Q ss_pred EEEEeEeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhcccccc
Q 005900 330 IVCFHLYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSA 409 (671)
Q Consensus 330 ~~~~~~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~~a 409 (671)
+++|++||.|+|++|+|.....++.+++++..++.++.+|++|+|+++. +|. + .+..+++|+++++|++|
T Consensus 321 ~~~~~~~v~P~l~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~r~~l~----~g~----~--~~~~~~~s~~l~~l~~a 390 (419)
T PRK14690 321 LVCTLVFARPAMSLLAGEGWSEPQGFTVPAAFEKRKKPGRREYLRARLR----QGH----A--EVFRSEGSGRISGLSWA 390 (419)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCccEEEEeCCCccCCCCCcEEEEEEEE----CCE----E--EECCCCCCHHHHHHHhC
Confidence 9999999999999999976433345889999999998999999999874 332 2 34567889999999999
Q ss_pred ccccccccccceecccceEEEEEEe
Q 005900 410 NALLELPATGSVISAGTLVSAIVIS 434 (671)
Q Consensus 410 n~li~iP~g~~~i~aG~~V~v~ll~ 434 (671)
|||+++|++.+.+++|+.|++++++
T Consensus 391 n~li~ip~~~~~~~~G~~V~v~~~~ 415 (419)
T PRK14690 391 EGLVELGDGARRIAPGDPVRFIPYG 415 (419)
T ss_pred CEEEEECCCCCccCCCCEEEEEEec
Confidence 9999999999999999999999874
No 6
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=100.00 E-value=2.6e-88 Score=740.55 Aligned_cols=390 Identities=45% Similarity=0.695 Sum_probs=365.8
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCCCC---CCceeeecccCCCceEE
Q 005900 19 AEEALQKVLSVAQRLPPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPG---EYPVITESRAGNDGIGV 95 (671)
Q Consensus 19 ~~eA~~~i~~~~~~~~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~~~---~l~v~g~~~aG~~~~~~ 95 (671)
++||+++++++..+...|+|+|.+|+||||||||+|++|+|+||+|+||||||+++|+.. .|+++|++.||+.+. .
T Consensus 1 ~~~a~~~~~~~~~~~~~e~v~l~~a~GrvlAedI~A~~~~P~f~~SamDGyAv~~~d~~~~~~~l~v~g~i~AG~~~~-~ 79 (394)
T cd00887 1 VEAARELLLALAPPLGTETVPLLEALGRVLAEDVVAPIDLPPFDNSAMDGYAVRAADTAGASVTLRVVGEIPAGEPPD-G 79 (394)
T ss_pred CHHHHHHHHhcCCCCCeEEEEHHHhCCCeeeeeeecCCCCCCCCCccccceEEeeccccCCCeEEEEeeEECCCCCCC-c
Confidence 379999999998888899999999999999999999999999999999999999999753 589999999998764 5
Q ss_pred EEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccCcccccchhh
Q 005900 96 IVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERIGASEIG 175 (671)
Q Consensus 96 ~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l~p~~i~ 175 (671)
.+.+|+|++||||++||+|||||||+|+++..+ +.|.|.+++++|+|||++|||+++||+|+++|++|+|.+|+
T Consensus 80 ~~~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~------~~i~i~~~~~~g~nIr~~Gedi~~G~~ll~~G~~l~p~~i~ 153 (394)
T cd00887 80 PLGPGEAVRIMTGAPLPEGADAVVMVEDTEEEG------GRVTITKPVKPGQNIRRAGEDIKAGDVLLPAGTRLTPADIG 153 (394)
T ss_pred ccCCCeEEEEcCCCCCCCCCCEEEEEEeEEECC------CEEEECCCCCCCCCCCcccCccCCCCEEECCCCCCCHHHHH
Confidence 899999999999999999999999999998754 37999999999999999999999999999999999999999
Q ss_pred hhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhh
Q 005900 176 LLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAF 255 (671)
Q Consensus 176 lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~ 255 (671)
+||++|+.+|+||++|||+||+|||||+++++. +..|+|+|+|+++|.++|+++|+++..+++++||++.|+++|++++
T Consensus 154 ~Las~Gi~~v~V~~~~rv~ii~tGdEl~~~g~~-~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~ 232 (394)
T cd00887 154 LLASLGIAEVPVYRRPRVAIISTGDELVEPGEP-LAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEAL 232 (394)
T ss_pred HHHhCCCCEEEEecCCEEEEEeCCCcccCCCCC-CCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999986 8899999999999999999999999999999999999999999999
Q ss_pred cccccEEEecCCcccCCccchhhhhcccc-eEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEe
Q 005900 256 SAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFH 334 (671)
Q Consensus 256 ~~~~DiVIttGG~s~G~~D~~~~~l~~~g-~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~ 334 (671)
++ +|+||||||+|+|++|+++++++++| +++||+++|+||+|+++|.++ +++||+|||||.|++++|+
T Consensus 233 ~~-~DliittGG~s~g~~D~~~~al~~~g~~~~f~gv~~kPG~p~~~g~~~----------~~~v~~LPG~P~sa~~~~~ 301 (394)
T cd00887 233 EE-ADVVITSGGVSVGDYDFVKEVLEELGGEVLFHGVAMKPGKPLAFGRLG----------GKPVFGLPGNPVSALVTFE 301 (394)
T ss_pred hC-CCEEEEeCCCCCCcchhHHHHHHhCCCeEEEEEEEEecCCCEEEEEEC----------CEEEEECCCCHHHHHHHHH
Confidence 74 99999999999999999999999996 999999999999999999996 5899999999999999999
Q ss_pred EeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhccccccccccc
Q 005900 335 LYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLE 414 (671)
Q Consensus 335 ~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~~an~li~ 414 (671)
+|+.|+|++++|...+.++.++++|.+++.++.++++|+|+++.. .+|. +.+.+.+.++|+++++|++||||++
T Consensus 302 ~~v~p~l~~l~g~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~--~~g~----~~~~~~~~~~s~~l~~l~~a~g~~~ 375 (394)
T cd00887 302 LFVRPALRKLQGAPEPEPPRVKARLAEDLKSKPGRREFLRVRLER--DEGG----LVVAPPGGQGSGLLSSLARADGLIV 375 (394)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEEeCCCcCCCCCCcEEEEEEEEe--cCCe----EEEEECCCCCcHHHHHHhhCCEEEE
Confidence 999999999999766556678999999999999999999999875 3454 6677888899999999999999999
Q ss_pred cccccceecccceEEEEEE
Q 005900 415 LPATGSVISAGTLVSAIVI 433 (671)
Q Consensus 415 iP~g~~~i~aG~~V~v~ll 433 (671)
+|++.+.+++|+.|+++++
T Consensus 376 ip~~~~~~~~G~~v~v~~~ 394 (394)
T cd00887 376 IPEGVEGLEAGEEVEVLLL 394 (394)
T ss_pred ECCCCCccCCCCEEEEEEC
Confidence 9999999999999999874
No 7
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=100.00 E-value=1.2e-87 Score=765.11 Aligned_cols=399 Identities=37% Similarity=0.585 Sum_probs=371.1
Q ss_pred cccccccHHHHHHHHHHhhhcC-CCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCC-CCCCceeeecccC
Q 005900 12 SQEKMISAEEALQKVLSVAQRL-PPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDG-PGEYPVITESRAG 89 (671)
Q Consensus 12 ~~~~~is~~eA~~~i~~~~~~~-~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~-~~~l~v~g~~~aG 89 (671)
....|+|++||++++++++.++ +.|+|+|.+|+||||||||+|++|+|+|++|+||||||+++|+ +..|+++|++.||
T Consensus 194 ~~~~~is~~eAl~~i~~~~~~~~~~e~V~l~~A~GRVlAedI~A~~d~P~f~~SamDGYAv~~~d~~~~~l~v~g~i~AG 273 (597)
T PRK14491 194 LSPAFLSVSQGLDKILSLVTPVTETEDVALDELDGRVLAQDVISPVNVPQHTNSAMDGYAFRSDDLEPESYTLVGEVLAG 273 (597)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCCCeEEEEHHHhCCCeeeeeeecCCCCCCCcccccceEEEeecccCCCeEEeeeEEcCC
Confidence 3557999999999999998887 5799999999999999999999999999999999999999996 3469999999999
Q ss_pred CCceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccCccc
Q 005900 90 NDGIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERI 169 (671)
Q Consensus 90 ~~~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l 169 (671)
+.+ ...+.+|+|+||||||+||+|||||||+|+++..+ +.|.|.+++.+|+|||++|||+++||+|++||++|
T Consensus 274 ~~~-~~~l~~G~avrI~TGa~iP~gaDaVV~~E~~~~~~------~~i~i~~~~~~g~nIr~~GeD~~~Ge~ll~~G~~i 346 (597)
T PRK14491 274 HQY-DGTLQAGEAVRIMTGAPVPAGADTVVMRELATQDG------DKVSFDGGIKAGQNVRLAGEDLAQGQVALAAGTRL 346 (597)
T ss_pred CCC-CcccCCCcEEEeCcCCCCCCCCCEEEEEEEEEecC------CEEEECCCCCCCCCccccccccCCCCEeECCcCCC
Confidence 865 45899999999999999999999999999997643 36999999999999999999999999999999999
Q ss_pred ccchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHH
Q 005900 170 GASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK 249 (671)
Q Consensus 170 ~p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~ 249 (671)
+|.+|++||++|+.+|+||++|||+||+|||||++++++ +.+|+|||+|+++|.++|+++|+++..+++++||++.|++
T Consensus 347 ~p~~i~lLAs~Gi~~V~V~~~prV~IistGdEl~~~g~~-~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~ 425 (597)
T PRK14491 347 SAPEQGLLASLGFAEVPVFRRPKVAVFSTGDEVQAPGET-LKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEA 425 (597)
T ss_pred CHHHHHHHHHCCCCeEEeccCCEEEEEecCCeeccCCCc-CCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHH
Confidence 999999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred HhhhhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeE
Q 005900 250 TLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSC 329 (671)
Q Consensus 250 ~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa 329 (671)
+|+++++ ++|+||||||+|+|++|+++++++++|+++||+++|+||||+++|.++ +++||+|||||.|+
T Consensus 426 ~l~~a~~-~~DlIIttGG~s~G~~D~~~~al~~lG~i~f~~v~~kPGkp~~~g~~~----------~~~v~~LPGnP~aa 494 (597)
T PRK14491 426 TLEQAAA-QADVVISSGGVSVGDADYIKTALAKLGQIDFWRINMRPGRPLAFGQIG----------DSPFFGLPGNPVAV 494 (597)
T ss_pred HHHHhhh-cCCEEEEcCCccCCCcccHHHHHHhcCcEEEEEEEeecCCcEEEEEEC----------CEEEEEccCCcHHH
Confidence 9999987 599999999999999999999999999999999999999999999996 58999999999999
Q ss_pred EEEEeEeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhcccccc
Q 005900 330 IVCFHLYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSA 409 (671)
Q Consensus 330 ~~~~~~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~~a 409 (671)
+++|+.|+.|+|++|+|.....++.+++++..+++++.+|++|+|+++.+. .+|. +++.+.++++|+++++|++|
T Consensus 495 ~~~~~~~v~P~l~~l~g~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~l~~~-~~g~----~~~~~~~~~~s~~l~~l~~a 569 (597)
T PRK14491 495 MVSFLQFVEPALRKLAGEQNWQPLLFPAIADETLRSRQGRTEFSRGIYHLG-ADGR----LHVRTTGKQGSGILSSMSEA 569 (597)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEEEEeCCccCCCCCCcEEEEEEEEEc-CCCe----EEEEeCCCCCcHHHHHHHhC
Confidence 999999999999999997654445688999999999999999999988753 3454 66777888999999999999
Q ss_pred ccccccccccceecccceEEEEEEe
Q 005900 410 NALLELPATGSVISAGTLVSAIVIS 434 (671)
Q Consensus 410 n~li~iP~g~~~i~aG~~V~v~ll~ 434 (671)
|||+++|++.+.+++|+.|+++++.
T Consensus 570 n~li~ip~~~~~~~~G~~V~v~~~~ 594 (597)
T PRK14491 570 NCLIEIGPAAETVNAGETVTIQPLA 594 (597)
T ss_pred CEEEEECCCCCccCCCCEEEEEEec
Confidence 9999999999999999999999885
No 8
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=100.00 E-value=1e-83 Score=745.39 Aligned_cols=399 Identities=38% Similarity=0.581 Sum_probs=370.8
Q ss_pred cccccHHHHHHHHHHhhhcC--CCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCC-------CCCCceee
Q 005900 14 EKMISAEEALQKVLSVAQRL--PPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDG-------PGEYPVIT 84 (671)
Q Consensus 14 ~~~is~~eA~~~i~~~~~~~--~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~-------~~~l~v~g 84 (671)
+.|+|++||++++++++++. ..|+|+|.+|+||||||||+|+.|+|+|++|+||||||+++|+ |..|+++|
T Consensus 7 ~~~~s~~eA~~~i~~~~~~~~~~~e~v~l~~a~grvlAedi~a~~~~P~f~~SamDGyAv~~~d~~~~~~~~p~~l~v~~ 86 (633)
T PRK14498 7 LTLVSLEEAREILESLLSELPLGTEEVPLEEALGRVLAEDVYAPIDVPPFDRSAMDGYAVRAADTFGASEANPVRLKLGG 86 (633)
T ss_pred ccCCCHHHHHHHHHhhCCCCCCCcEEEEHHHhCCCceeceeecCCCCCCCcccccceEEEeehhccccccCCCeEEEEee
Confidence 45899999999999998887 7899999999999999999999999999999999999999985 33589999
Q ss_pred ecccCCCceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEec
Q 005900 85 ESRAGNDGIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILK 164 (671)
Q Consensus 85 ~~~aG~~~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~ 164 (671)
+++||+.+ ...+++|+|+||||||+||+|||||||+|+++..++ ++|.|.+++++|+|||++|||+++||+|++
T Consensus 87 ~i~AG~~~-~~~~~~g~av~I~TGa~vP~gad~Vi~~E~~~~~~~-----~~i~i~~~~~~g~~ir~~G~d~~~G~~l~~ 160 (633)
T PRK14498 87 EVHAGEAP-DVEVEPGEAVEIATGAPIPRGADAVVMVEDTEEVDD-----DTVEIYRPVAPGENVRPAGEDIVAGELILP 160 (633)
T ss_pred EEcCCCCC-CcccCCCeEEEECCCCCCCCCCCEEEEEEEEEcCCC-----CEEEECCCCCCCCCcccCcCccCCCCEEEC
Confidence 99999965 458999999999999999999999999999986542 379999999999999999999999999999
Q ss_pred cCcccccchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCH
Q 005900 165 SGERIGASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDE 244 (671)
Q Consensus 165 ~G~~l~p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~ 244 (671)
+|++|+|.++++||++|+.+|+||++|||+||+|||||+++++. +..|+|+|+|+++|.++|+++|+++..+++++||+
T Consensus 161 ~g~~i~p~~i~~las~g~~~v~v~~~prv~vi~tG~El~~~~~~-~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~ 239 (633)
T PRK14498 161 KGTRLTPRDIGALAAGGVAEVPVYKKPRVGIISTGDELVEPGEP-LKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDE 239 (633)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEecCcEEEEEecCccccCCCCC-CCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCH
Confidence 99999999999999999999999999999999999999999986 78999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCC
Q 005900 245 EELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPG 324 (671)
Q Consensus 245 ~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPG 324 (671)
+.|+++|+++++ ++|+||||||+|+|++|+++++++++|+++|++++|+||+|+++|.++ +++||+|||
T Consensus 240 ~~i~~~l~~~~~-~~D~iIttGG~s~g~~D~~~~~l~~~g~~~~~~v~~~PG~~~~~g~~~----------~~~v~~LPG 308 (633)
T PRK14498 240 EELEAALRKALK-ECDLVLLSGGTSAGAGDVTYRVIEELGEVLVHGVAIKPGKPTILGVIG----------GKPVVGLPG 308 (633)
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCcCCCcccHHHHHHhcCCEEEeeEeecCCCCEEEEEEC----------CEEEEECCC
Confidence 999999999987 599999999999999999999999999999999999999999999996 589999999
Q ss_pred CceeEEEEEeEeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhc
Q 005900 325 NPVSCIVCFHLYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLL 404 (671)
Q Consensus 325 nP~aa~~~~~~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~ 404 (671)
||.|++++|++|+.|+|++++|......+.++++|.+++.++.++++|+|+.+.+ ++|. +.+.|.. ++|++++
T Consensus 309 ~p~aa~~~~~~~v~P~l~~l~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~g~----~~~~~~~-~~s~~~~ 381 (633)
T PRK14498 309 YPVSALTIFEEFVAPLLRKLAGLPPPERATVKARLARRVRSELGREEFVPVSLGR--VGDG----YVAYPLS-RGSGAIT 381 (633)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEEeCCccCCCCCccEEEEEEEEe--eCCe----EEEEECC-CCCHHHH
Confidence 9999999999999999999999876544568899999999999999999999876 3454 6677776 6899999
Q ss_pred cccccccccccccccceecccceEEEEEEeccc
Q 005900 405 SMKSANALLELPATGSVISAGTLVSAIVISDIS 437 (671)
Q Consensus 405 sl~~an~li~iP~g~~~i~aG~~V~v~ll~~l~ 437 (671)
+++.||||+++|++...+++|+.|+++++....
T Consensus 382 ~l~~an~~~~~~~~~~~~~~G~~v~~~~~~~~~ 414 (633)
T PRK14498 382 SLVRADGFIEIPANTEGLEAGEEVEVELFGPLV 414 (633)
T ss_pred HHHhCCEEEEECCCCcccCCCCeEEEEEecCcc
Confidence 999999999999999999999999999986553
No 9
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.3e-59 Score=480.93 Aligned_cols=395 Identities=41% Similarity=0.606 Sum_probs=334.4
Q ss_pred ccccccccHHHHHHHH---HHhhhcC---CCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCCCCCCceee
Q 005900 11 GSQEKMISAEEALQKV---LSVAQRL---PPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPGEYPVIT 84 (671)
Q Consensus 11 ~~~~~~is~~eA~~~i---~~~~~~~---~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~~~~l~v~g 84 (671)
+++..+++..+|..-. .+..+.. ..+.+-..--+++++++++.++.|+||+. |..||||+.+.|.++..+++|
T Consensus 6 q~~~kvLp~~~~rd~~~~lek~~~e~~s~~~~~i~ts~~v~~~il~e~~s~vdipP~t-SikdGyAv~a~~~~g~rrivg 84 (411)
T KOG2371|consen 6 QSPSKVLPPATARDVFQKLEKLCKEAPSRIVTVIQTSLKVGRKILEEIKSEVDIPPLT-SIKDGYAVIANDGPGKRRIVG 84 (411)
T ss_pred cCCCCCCChhhhhhhhhHHHHHHHhhcccceeeEecccccchhhHHhhcCcccCCCcc-eeccceEEEecCCCcceEEEe
Confidence 4455677777666332 2222221 22223333357779999999999999998 999999999999999999999
Q ss_pred ecccCCCceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccc-cccceEEEEEeecCccceeccccccccceEEe
Q 005900 85 ESRAGNDGIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTA-AESKRVKILVQTNKGVDIRPVGYDIEKDAIIL 163 (671)
Q Consensus 85 ~~~aG~~~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~-~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll 163 (671)
...||+.+ ..++-+|+|+||.||+++|.|+||||+.|+++....+. .++..|.+...++.|+|||+.|+|++ |+.++
T Consensus 85 ~s~ag~~p-~~~~~~~~cvrittG~pip~gadtvvqve~t~L~~~~n~~eEl~i~~lv~~~~g~~ir~vgsDi~-~e~i~ 162 (411)
T KOG2371|consen 85 LSTAGTPP-NAPLISGECVRITTGGPIPDGADTVVQVEDTELLREDNGLEELEIEILVKPQEGDNIRPVGSDIK-GEIIL 162 (411)
T ss_pred eeccCCCC-ccccccCceEEecCCCcccccccceEEehhHHHHhhhccccccceEEEeecCCCCcccccccccc-ceeec
Confidence 99999977 46899999999999999999999999999987654311 12345888889999999999999999 99999
Q ss_pred ccCcccccchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCC
Q 005900 164 KSGERIGASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDD 243 (671)
Q Consensus 164 ~~G~~l~p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd 243 (671)
++|..+.|..|++|+.+|+.++++||+|+|+|++||+|+..+.+ ..+|+++|+|+.+|.+++++.|+.+++.++++||
T Consensus 163 k~~~~l~p~si~~l~~~gi~~v~iykkpvVtV~sTgSel~~~d~--~~pg~v~~~n~s~l~~l~~~~Gf~~i~~gvv~D~ 240 (411)
T KOG2371|consen 163 KKGHHLDPSSIGLLHALGIVQVEIYKKPVVTVSSTGSELNSPDR--SGPGMVRDSNRSQLLELFQEHGFTAIDAGVVPDD 240 (411)
T ss_pred cccccCCcccceehhhccccccceecccEEEEeeccccccCccc--cCCceeeecchHHHHHHHHHhCccccccccccCc
Confidence 99999999999999999999999999999999999999999854 6799999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcccc-eEEEecccccCCCcce-eeEeccccCchhhhhhhhhcc
Q 005900 244 EEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNKVCMKPGKPLT-FAEINIKPTDDVMVNKILAFG 321 (671)
Q Consensus 244 ~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g-~i~f~~v~~~PGkp~~-~a~~~~~~~~~~~~~~~~v~~ 321 (671)
.+.|+++|.++.+. +|+||||||+|+|++|+++++++.+. ++.|.+|.|+||.|+. ||.+.... .++.+++|+
T Consensus 241 ~~~i~e~L~e~~~~-aDvIlTtGGvsm~~~D~~~~a~~~l~f~i~~g~V~mkpgl~~TsfA~l~~~g----ir~~k~i~~ 315 (411)
T KOG2371|consen 241 VTRIKEKLREASSF-ADVILTTGGVSMGPRDVTKEALKVLEFEIHLGRVDMKPGLPITSFATLSRAG----IRGPKLIFN 315 (411)
T ss_pred HHHHHHHHHHhhhh-ccEEEecCCccccchhhhhhHhhhhheeeecceeeccCCCcccceeeeeccc----cccceEEEE
Confidence 99999999999985 99999999999999999999999877 8899999999999998 99886311 123589999
Q ss_pred CCCCceeEEEEEeEeeechhhcccCCCCCcccccccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhh
Q 005900 322 LPGNPVSCIVCFHLYIVPAIRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSS 401 (671)
Q Consensus 322 LPGnP~aa~~~~~~~v~P~L~~l~G~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~ 401 (671)
|||||++|++++++|+.|+|++|.|+.... +-..|.+|.|+..... +.. |..++...++|-|+
T Consensus 316 lPGnpvsAvv~c~lf~~PaLr~m~g~~~~~-------------~ld~r~e~~r~i~~~~-~~l---~~~~a~s~gNqiss 378 (411)
T KOG2371|consen 316 LPGNPVSAVVECNLFLLPALRHMEGQLKET-------------SLDDRPEHVRAISHET-EFL---PARWAQSTGNQISS 378 (411)
T ss_pred CCCCcchhhhhhHHHHHHHHHHHhcccccc-------------ccCcchhhcccccccc-ccC---Ccchhhhccccccc
Confidence 999999999999999999999999975421 2235788988877322 111 22467788999999
Q ss_pred hhcccccccccccccccc-ceecccceEEEEE
Q 005900 402 RLLSMKSANALLELPATG-SVISAGTLVSAIV 432 (671)
Q Consensus 402 ~l~sl~~an~li~iP~g~-~~i~aG~~V~v~l 432 (671)
.+.++..|++++++|+.+ ..+.+|+.|.++.
T Consensus 379 ~l~~~~~a~~l~~L~~ks~~~~~~g~vv~~~v 410 (411)
T KOG2371|consen 379 RLGSEVGAGVLLILPAKSNTCFSAGEVVDARV 410 (411)
T ss_pred cccchhhccceeecccccccccccCCeeeeee
Confidence 999999999999999755 4578899988764
No 10
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=100.00 E-value=1.9e-43 Score=340.84 Aligned_cols=159 Identities=48% Similarity=0.761 Sum_probs=126.5
Q ss_pred cccHHHHHHHHHHhhhcCCCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEecCCCC---CCceeeecccCCCc
Q 005900 16 MISAEEALQKVLSVAQRLPPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPG---EYPVITESRAGNDG 92 (671)
Q Consensus 16 ~is~~eA~~~i~~~~~~~~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~d~~~---~l~v~g~~~aG~~~ 92 (671)
|+|++||++++++++.++..|+|+|.||+||||||||+|++|+|+|++|+||||||+++|... .|++++++.||+.+
T Consensus 1 Mis~~eA~~~i~~~~~~~~~e~v~l~~a~grvlAedi~a~~~~P~~~~SamDGyAv~~~d~~~~~~~l~v~~~i~aG~~~ 80 (162)
T PF03453_consen 1 MISVEEALEIILSHIKPLPTETVPLDDALGRVLAEDIYAPRDVPPFDRSAMDGYAVRSEDTSGASPELRVVGEIAAGDPP 80 (162)
T ss_dssp -BEHHHHHHHHHHHS----EEEEEGGGGTT-BBSS-EE-SS-BSSS-EESSSEEEE-GGGGTTCCTEEEEEEEEBTTC--
T ss_pred CCCHHHHHHHHHhhCCCCCcEEEEHHHhCCCeeeeeeecCCCCCCCcchhhhccEEecccccCCCcceeeeeeeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999754 48999999999876
Q ss_pred eEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccceeccccccccceEEeccCcccccc
Q 005900 93 IGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDIRPVGYDIEKDAIILKSGERIGAS 172 (671)
Q Consensus 93 ~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~nir~~Ged~~~G~~ll~~G~~l~p~ 172 (671)
. ..+++|+|+|||||++||+|+|||||+|+++..++ +|+|.+++++|+|||++|||+++||+|+++|++|+|.
T Consensus 81 ~-~~l~~g~av~I~TGa~vP~g~DaVV~~E~~~~~~~------~i~i~~~~~~g~nIr~~G~di~~G~~ll~~G~~l~p~ 153 (162)
T PF03453_consen 81 P-IPLQPGEAVRIMTGAPVPEGADAVVPIEDTEVEGD------EIRILKPVKPGQNIRPKGEDIKKGEVLLKKGTRLTPA 153 (162)
T ss_dssp S-SB--TTEEEEE-TTSB--TT-SEEEEGGGCEEETT------EEEESS--STTTTEE-TTSSB-TTSEEE-TTBB--HH
T ss_pred c-ccCCCCeEEEEeCCCccCCCCCEEEEehheeeccc------EEEEeeccCCCCcEEeCCccccCCCEEECCCCCCCHH
Confidence 4 58999999999999999999999999999998764 8999999999999999999999999999999999999
Q ss_pred hhhhhhhcc
Q 005900 173 EIGLLATAG 181 (671)
Q Consensus 173 ~i~lLas~G 181 (671)
+|++|+++|
T Consensus 154 ~i~lLas~G 162 (162)
T PF03453_consen 154 HIGLLASAG 162 (162)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 999999987
No 11
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=99.98 E-value=2.7e-34 Score=302.38 Aligned_cols=270 Identities=21% Similarity=0.299 Sum_probs=202.6
Q ss_pred hHHhhhhccCCCCCCCCC--ccccCceEEEecCCCC-----CCce-eeecccCCCceEEEEeeceEEEEeeCCCCCCCCc
Q 005900 45 GKVLAEDIRAPDPLPPYP--ASVKDGYAVVASDGPG-----EYPV-ITESRAGNDGIGVIVTSGTVAYVTTGGPIPDGAD 116 (671)
Q Consensus 45 GrvlAedI~a~~~~P~f~--~SamDGyAv~~~d~~~-----~l~v-~g~~~aG~~~~~~~l~~g~av~I~TGa~lP~gaD 116 (671)
|.+||+|++... |... ..-..|.-+..+|.+. ...+ +.+...| .+++++|+..+.-+.-.+|..
T Consensus 1 G~~l~Hd~t~~~--p~~~k~~~~~kG~vi~~~di~~L~~~G~~~v~v~~~~~~------~vhEd~Aa~~la~~~~g~~~~ 72 (312)
T cd03522 1 GAILAHDITRIG--PGEFKGRAFKKGHVLTAEDIAALLAAGKEHVYVARLEPG------DVHEDEAAARLAAALAGDGLR 72 (312)
T ss_pred CceeEeeeeccc--CCcccCceecCCCCCCHHHHHHHHhCCCcEEEEEECCCC------ccCHHHHHHHHHHHhcCCCce
Confidence 678999999753 4332 2336677777777542 2222 3333333 367777765443333333433
Q ss_pred ceEEecc-cccccccccccceEEEEEe----ec-Cc---cceeccccccccceEEeccCcccccchh---------hhhh
Q 005900 117 AVVQVED-TDEVNHTAAESKRVKILVQ----TN-KG---VDIRPVGYDIEKDAIILKSGERIGASEI---------GLLA 178 (671)
Q Consensus 117 aVV~~E~-~~~~~~~~~~~~~i~i~~~----~~-~g---~nir~~Ged~~~G~~ll~~G~~l~p~~i---------~lLa 178 (671)
.--|.|- +..... ..+.++|... +. .+ --.++.+..+++|+.| +++||-|..+ ++++
T Consensus 73 ~~~~~~Grvnl~A~---~~Gll~vd~~~l~~~N~~~~i~~at~~~~~~v~~g~~v--A~~riiPl~v~~~~~~~a~~~~~ 147 (312)
T cd03522 73 LSEPAEGRVNLFAE---RAGLLKVDVEALDALNAIDAITLATLHNNTPVEAGQMV--ATVKIIPLAVPEALVERAEALAR 147 (312)
T ss_pred ECCCccceEEEEEC---CCeeEEEcHHHHHhhhCCCCEEEEEcCCCeEeCCCCEE--EEEEEeeeecCHHHHHHHHHHHH
Confidence 2223221 111000 0011222110 00 00 0246778899999999 9999999987 5788
Q ss_pred hcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhccc
Q 005900 179 TAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAG 258 (671)
Q Consensus 179 s~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~ 258 (671)
+.|+.+|.||++|||+||+||||+. .|+++|+|+++|.++|+++|+++..+.+++||++.|+++|+++++++
T Consensus 148 ~~gi~~V~v~r~~rv~II~TG~Ev~--------~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g 219 (312)
T cd03522 148 DGPLLRVAPFRPLRVGLIVTGSEVY--------GGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAG 219 (312)
T ss_pred hCCCcEEEecCCCEEEEEEcCCcCC--------CCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCC
Confidence 8999999999999999999999975 68999999999999999999999999999999999999999998755
Q ss_pred ccEEEecCCcccCCccchhhhhcccc-eEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEee
Q 005900 259 IDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYI 337 (671)
Q Consensus 259 ~DiVIttGG~s~G~~D~~~~~l~~~g-~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v 337 (671)
+|+||||||+|++++|+++++++++| +++|++++|+||+|+++|.++ ++|||+|||||.|+..++..+|
T Consensus 220 ~DlIItTGGtsvg~~D~tp~Ai~~~G~ei~~~Gv~v~PG~~l~~g~~~----------~~pVigLPG~p~s~~~t~~d~V 289 (312)
T cd03522 220 AELLILTGGASVDPDDVTPAAIRAAGGEVIRYGMPVDPGNLLLLGYLG----------GVPVIGLPGCARSPKLNGFDLV 289 (312)
T ss_pred CCEEEEeCCcccCCcchHHHHHHhcCceEEEeeecccCCceEEEEEEC----------CEEEEECCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 899999999999999999986 5899999999999988777777
Q ss_pred echhhcccCC
Q 005900 338 VPAIRHLSGW 347 (671)
Q Consensus 338 ~P~L~~l~G~ 347 (671)
+|.| +.|.
T Consensus 290 Lprl--lag~ 297 (312)
T cd03522 290 LPRL--LAGE 297 (312)
T ss_pred HHHH--HcCC
Confidence 8865 5564
No 12
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=99.97 E-value=3.3e-31 Score=251.03 Aligned_cols=137 Identities=42% Similarity=0.676 Sum_probs=131.2
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
|||+||+|||||++++++ +..|+++|+|+++|.++|+++|+++..+.+++||++.|+++|+++++ ++|+||||||+|+
T Consensus 1 prv~ii~tGdEl~~~~~~-~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-~~DliIttGG~g~ 78 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQP-LEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD-EADVVLTTGGTGV 78 (144)
T ss_pred CEEEEEEcCcccccCCCC-CCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh-CCCEEEECCCCCC
Confidence 799999999999998886 78899999999999999999999999999999999999999999987 5999999999999
Q ss_pred CCccchhhhhcccceEEEecc-------cccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEeeec
Q 005900 271 GDKDFVKPLLQKKGTIYFNKV-------CMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVP 339 (671)
Q Consensus 271 G~~D~~~~~l~~~g~i~f~~v-------~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P 339 (671)
|++|+++++++++|+.+|+++ .++||+|+.++.++ +++||+|||||.|+..+|+.|+.|
T Consensus 79 g~~D~t~~ai~~~g~~~~~gv~~~~~~~~~~PG~~~~~~~~~----------~~~v~~LPG~P~aa~~~~~~~v~p 144 (144)
T TIGR00177 79 GPRDVTPEALEELGEKEIPGFGEYFTAVLSRPGKPATAGVRG----------GTLIFGLPGNPVSALVTFEVLVLP 144 (144)
T ss_pred CCCccHHHHHHHhCcEEEeeeccccchhhCCCCCceEEEEEC----------CEEEEECCCCHHHHHHHHHHHccC
Confidence 999999999999999999999 99999999999886 589999999999999999999877
No 13
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=99.96 E-value=7.4e-31 Score=258.41 Aligned_cols=161 Identities=37% Similarity=0.543 Sum_probs=149.0
Q ss_pred EEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceE--EEeccccCChhhHHHHHhhhcCCccceEEEeecCCC
Q 005900 471 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKV--VATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 548 (671)
Q Consensus 471 ~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v--~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG 548 (671)
+++++|||+||++..|+++|+|+++|+++|+++ |++. ..+.++|||++.|+++|+++++..++|+||||||+|
T Consensus 3 ~~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~-----G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg 77 (193)
T PRK09417 3 TLKIGLVSISDRASSGVYEDKGIPALEEWLASA-----LTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG 77 (193)
T ss_pred CcEEEEEEEcCcCCCCceeechHHHHHHHHHHc-----CCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 479999999999999999999999999999998 6541 345899999999999999998534799999999999
Q ss_pred CCCCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHH------------H
Q 005900 549 FTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECME------------A 616 (671)
Q Consensus 549 ~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~------------~ 616 (671)
++++|+|+||++++++|++|||+|+|+..+++..|.+++||+.+|+.++++||+|||+|.+++.+|+ .
T Consensus 78 ~g~rDvTpeAv~~l~~keipG~~e~~r~~s~~~~~~a~LSRa~agv~~~tlI~nLPGSp~a~~~~le~i~~~~~~~~~~~ 157 (193)
T PRK09417 78 PARRDVTPEATLAVADKEMPGFGEQMRQISLKFVPTAILSRQVAVIRGQSLIINLPGQPKSIKETLEGLKDADGNVVVPG 157 (193)
T ss_pred CCCCCcHHHHHHHHhCCcCCcHHHHHHHHhcccccHHHhhcceeEEeCCEEEEECCCCHHHHHHHHHhccccccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHhhcCcccccC
Q 005900 617 LLPALKHALKQIKGDKREKH 636 (671)
Q Consensus 617 ilp~L~~~~~~l~g~~~~~~ 636 (671)
++|.|+|++.+++|.+..++
T Consensus 158 i~~~~~h~~~~~~~~~~~~~ 177 (193)
T PRK09417 158 IFAAVPYCIDLIGGPYIETN 177 (193)
T ss_pred HHHHHHHHHHHhcCCccccc
Confidence 89999999999999765544
No 14
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=99.96 E-value=2.5e-30 Score=245.74 Aligned_cols=158 Identities=42% Similarity=0.699 Sum_probs=148.1
Q ss_pred CceEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCC
Q 005900 468 GYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 547 (671)
Q Consensus 468 ~~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGt 547 (671)
.+...+++|||++|..+.|...|..|+.+.++|++. |+++..+.+||||.+.|++++..+++.. +|+|||||||
T Consensus 4 ~~~~~~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~a-----g~~~~~~~iV~D~~~~I~~~l~~~~~~~-~DvvlttGGT 77 (169)
T COG0521 4 APKPLRIAVVTVSDRRSTGEYEDKSGPLLVELLEEA-----GHNVAAYTIVPDDKEQIRATLIALIDED-VDVVLTTGGT 77 (169)
T ss_pred cccceeEEEEEEecccccCCccccchhHHHHHHHHc-----CCccceEEEeCCCHHHHHHHHHHHhcCC-CCEEEEcCCc
Confidence 355689999999999999999999999999999999 9999999999999999999999998743 9999999999
Q ss_pred CCCCCCCChHHHHHhhhhcCCCeeeeeecccccc-cchhhhcccccccccceEEEeCCCChhhHHHHHH-HHHHHHHHHH
Q 005900 548 GFTPRDVTPEATKELIERETPGLLYVMMQESLKV-TPFAMLSRSAAGIRGSTLIINMPGNPNAVAECME-ALLPALKHAL 625 (671)
Q Consensus 548 G~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~-~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~-~ilp~L~~~~ 625 (671)
|++++|+|+||+.++++|++|||+|.||..++.. .|.+.+||+.+|+.++++||+|||+|.|++.+++ .++|.|.+++
T Consensus 78 G~t~RDvTpEA~~~~~dKeipGFgE~fR~~S~~~~g~~AiLSRa~aGv~~~tlIf~LPGSp~Avr~~l~~iI~p~l~~~~ 157 (169)
T COG0521 78 GITPRDVTPEATRPLFDKEIPGFGELFRRLSLEEIGPTAILSRAVAGVRNGTLIFNLPGSPGAVRDALEGIILPELDYCI 157 (169)
T ss_pred cCCCCcCCHHHHHHHHhccCCcHHHHHHHhhhhcCCCcEEEeeeeeEEeCCeEEEEcCCChhhHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999998 7789999776
Q ss_pred HhhcCc
Q 005900 626 KQIKGD 631 (671)
Q Consensus 626 ~~l~g~ 631 (671)
..+.+-
T Consensus 158 ~~~~~~ 163 (169)
T COG0521 158 DLLHGV 163 (169)
T ss_pred cccccc
Confidence 665554
No 15
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=99.96 E-value=5.3e-30 Score=269.02 Aligned_cols=196 Identities=35% Similarity=0.532 Sum_probs=175.9
Q ss_pred cceEEEEEEecccCCCCCcceeeeEe-cccccCCCC-ceeeccCCCceEEEEEEEEeecccccCCCCCCCCCceEEEecC
Q 005900 425 GTLVSAIVISDISSTDNSKIDTSLVL-GSTLQGSKP-KEVTTDCSGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNS 502 (671)
Q Consensus 425 G~~V~v~ll~~l~~~g~~~v~v~~~~-~~~~~~~~~-~~~~~~~~~~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~ 502 (671)
|-.|..+.+++|++ .+++-++++++ +..|.++|| .|. ....+.+++||++|||+..|+++|+|+++|+++|++
T Consensus 112 ~~~~a~ltiydm~k-~~~~~~~i~~~~l~~k~ggksg~~~----~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~ 186 (312)
T PRK03604 112 AVSVAALTIYDMLK-PVDKALEIGGIRLLEKTGGKSGHKR----RFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEE 186 (312)
T ss_pred HHHHHHHHHHHHHH-hcCCCCEEEeEEEEEeeCCCCCccc----ccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHH
Confidence 34444455678888 66777777777 888899999 452 113335789999999999999999999999999999
Q ss_pred CccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeeccccccc
Q 005900 503 SSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVT 582 (671)
Q Consensus 503 ~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~ 582 (671)
+ |+++..+.++|||++.|+++|+++++ +++|+||||||+|++++|+|+||+++++++.++|+.+.+++++..++
T Consensus 187 ~-----G~~v~~~~iVpDD~~~I~~al~~a~~-~~~DlIITTGGtg~g~~D~tpeAl~~lg~~~~~Gvae~ir~~g~~~~ 260 (312)
T PRK03604 187 A-----GFEVSHYTIIPDEPAEIAAAVAAWIA-EGYALIITTGGTGLGPRDVTPEALAPLLERRLPGIAEALRSWGQGRT 260 (312)
T ss_pred C-----CCEEEEEEEcCCCHHHHHHHHHHhhh-CCCCEEEECCCCCCCCCccHHHHHHHhcCccccchHHHHHhcccCCC
Confidence 9 99999999999999999999999863 57999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHHHHHHHhhcCc
Q 005900 583 PFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGD 631 (671)
Q Consensus 583 pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L~~~~~~l~g~ 631 (671)
|+++++|..+|+.++++||+|||+|.++..+|+.|+|.|.|++++++|.
T Consensus 261 Pga~lsr~~~G~~~~tlI~~LPG~P~aa~~~~~~llp~l~h~~~~~~g~ 309 (312)
T PRK03604 261 PTAMLSRLVAGMIGNSLVVALPGSPGGASDALAVLLPALFHAFAMVKGE 309 (312)
T ss_pred CCcccCcceEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999986
No 16
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=99.96 E-value=7.8e-30 Score=238.48 Aligned_cols=131 Identities=33% Similarity=0.574 Sum_probs=124.8
Q ss_pred eEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccC
Q 005900 192 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG 271 (671)
Q Consensus 192 rV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G 271 (671)
||+||+|||||+ .|+++|+|+++|+++|+++|+++....+++||+++|+++|++++++ +|+||||||+|+|
T Consensus 1 ~v~ii~~G~El~--------~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g 71 (133)
T cd00758 1 RVAIVTVSDELS--------QGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASRE-ADLVLTTGGTGVG 71 (133)
T ss_pred CEEEEEeCcccc--------CCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCC
Confidence 689999999997 4899999999999999999999999999999999999999999975 9999999999999
Q ss_pred CccchhhhhcccceEEEe--cccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEeeechh
Q 005900 272 DKDFVKPLLQKKGTIYFN--KVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAI 341 (671)
Q Consensus 272 ~~D~~~~~l~~~g~i~f~--~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L 341 (671)
++|+++++++++++..|+ +++|+||+|.++|.++ +++||+|||||.|+..+|+.|+.|+|
T Consensus 72 ~~D~t~~ai~~~g~~~~~g~~~~~~pg~~~~~~~~~----------~~~i~~LPG~p~a~~~~~~~~v~p~l 133 (133)
T cd00758 72 RRDVTPEALAELGEREAHGKGVALAPGSRTAFGIIG----------KVLIINLPGSPKSALTTFEALVLPAL 133 (133)
T ss_pred CCcchHHHHHHhcCEEeccCcccccCCCceEEEEEC----------CEEEEECCCCHHHHHHHHHHhheecC
Confidence 999999999999988888 9999999999999986 58999999999999999999999976
No 17
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=99.95 E-value=1.7e-28 Score=234.61 Aligned_cols=152 Identities=52% Similarity=0.833 Sum_probs=134.8
Q ss_pred EEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCC
Q 005900 472 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 551 (671)
Q Consensus 472 ~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~ 551 (671)
++++||++|||+..|+++|+|+++|+++|+++ |+++..+.+++||++.|+++|+++++..++|+||||||+|+++
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~ 75 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEA-----GHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAP 75 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHc-----CCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 47899999999999999999999999999999 9999999999999999999999987422799999999999999
Q ss_pred CCCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHHHHHHHhh
Q 005900 552 RDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQI 628 (671)
Q Consensus 552 ~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L~~~~~~l 628 (671)
+|+|++++++++++++||+++.++..+.+..|...++|..+|+.++++||+|||+|.++..+|+.++|.|+++++++
T Consensus 76 ~D~t~~al~~~~~~~l~g~~~~~~~~~~~pg~~~~~~~~~~g~~~~~~v~~LPG~P~aa~~~~~~v~P~l~~~~~~~ 152 (152)
T cd00886 76 RDVTPEATRPLLDKELPGFGEAFRALSLEETGTAMLSRAVAGIRGGTLIFNLPGSPKAVREALEVILPELPHLLDLL 152 (152)
T ss_pred CcCcHHHHHHHhCCcCccHHHHHHHhhcccCCcEEEechhheEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999987654444444444445666678888999999999999999999999889999998864
No 18
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=99.95 E-value=1.9e-28 Score=236.52 Aligned_cols=152 Identities=30% Similarity=0.473 Sum_probs=138.2
Q ss_pred ceEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCC
Q 005900 469 YTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 548 (671)
Q Consensus 469 ~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG 548 (671)
+++++++||++|||+. +++|+|+++|+++|+++ |+++..+.+++||.+.|+++|+++++.+++|+||||||+|
T Consensus 2 ~~~~rv~vit~~d~~~--~~~d~n~~~l~~~L~~~-----G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 2 FIPLRIAILTVSDTRT--EEDDTSGQYLVERLTEA-----GHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred CCccEEEEEEEeCcCC--ccCCCcHHHHHHHHHHC-----CCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 6789999999999975 57999999999999999 9999999999999999999999986435799999999999
Q ss_pred CCCCCCChHHHHHhhhhcCCCeeeeeecccccccc-hhh--hcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHH
Q 005900 549 FTPRDVTPEATKELIERETPGLLYVMMQESLKVTP-FAM--LSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHA 624 (671)
Q Consensus 549 ~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~p-g~~--lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~ 624 (671)
++++|+|+||+++++++++||+++ .++++.++| |++ +||+.+|+.++++||+|||||.+++.+|+.+ .|+|.|.
T Consensus 75 ~g~~D~t~eal~~l~~~~l~G~~~--~~~~i~~~p~G~~~~lsr~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~ 152 (163)
T TIGR02667 75 FTGRDVTPEALEPLFDKTVEGFGE--LFRQLSYEEIGTSTIQSRALAGLANGTFVFCLPGSTGACRTAWDKIIAAQLDAR 152 (163)
T ss_pred CCCCCCcHHHHHHHHCCcCCcHHH--HHHHHhhcccCHHHHHhhhhheeeCCeEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976 477888998 766 6888899999999999999999999999885 7999998
Q ss_pred HHhhc
Q 005900 625 LKQIK 629 (671)
Q Consensus 625 ~~~l~ 629 (671)
++.+.
T Consensus 153 ~~~~~ 157 (163)
T TIGR02667 153 HRPCN 157 (163)
T ss_pred hcccc
Confidence 77654
No 19
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=99.95 E-value=3.2e-29 Score=241.84 Aligned_cols=140 Identities=19% Similarity=0.331 Sum_probs=128.4
Q ss_pred eecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhc-ccccEEEecC
Q 005900 188 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGIDILLTSG 266 (671)
Q Consensus 188 ~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~DiVIttG 266 (671)
|+++||+||+||||+. +++|+|+++|+++|+++|+++..+.+++||++.|+++|+++++ +++|+|||||
T Consensus 2 ~~~~rv~vit~~d~~~----------~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttG 71 (163)
T TIGR02667 2 FIPLRIAILTVSDTRT----------EEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITG 71 (163)
T ss_pred CCccEEEEEEEeCcCC----------ccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 5789999999999964 4699999999999999999999999999999999999999863 3599999999
Q ss_pred CcccCCccchhhhhccc------c-eEEEecccccC-CCcce-----eeEeccccCchhhhhhhhhccCCCCceeEEEEE
Q 005900 267 GVSMGDKDFVKPLLQKK------G-TIYFNKVCMKP-GKPLT-----FAEINIKPTDDVMVNKILAFGLPGNPVSCIVCF 333 (671)
Q Consensus 267 G~s~G~~D~~~~~l~~~------g-~i~f~~v~~~P-Gkp~~-----~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~ 333 (671)
|+|+|++|+++++++++ | +.+||+++|+| |+|+. +|.++ +++||+|||||.|+..+|
T Consensus 72 Gtg~g~~D~t~eal~~l~~~~l~G~~~~~~~i~~~p~G~~~~lsr~~~g~~~----------~~~v~~LPG~P~aa~~~~ 141 (163)
T TIGR02667 72 GTGFTGRDVTPEALEPLFDKTVEGFGELFRQLSYEEIGTSTIQSRALAGLAN----------GTFVFCLPGSTGACRTAW 141 (163)
T ss_pred CcCCCCCCCcHHHHHHHHCCcCCcHHHHHHHHhhcccCHHHHHhhhhheeeC----------CeEEEECCCCHHHHHHHH
Confidence 99999999999999998 7 67899999999 99975 88775 589999999999999999
Q ss_pred eEeeechhhcccCC
Q 005900 334 HLYIVPAIRHLSGW 347 (671)
Q Consensus 334 ~~~v~P~L~~l~G~ 347 (671)
+.|+.|+|++..+.
T Consensus 142 ~~~v~P~l~~~~~~ 155 (163)
T TIGR02667 142 DKIIAAQLDARHRP 155 (163)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 20
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=99.94 E-value=1.2e-28 Score=235.67 Aligned_cols=142 Identities=23% Similarity=0.387 Sum_probs=125.2
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcc-cccEEEecCCcc
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSGGVS 269 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~~DiVIttGG~s 269 (671)
.||+||++|||+. .|+++|+|+++|+++|+++|+++..+.+++||++.|+++|++++++ ++|+||||||+|
T Consensus 1 ~~~~ii~~~~e~~--------~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 1 LRAAVLTVSDTRS--------AGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred CEEEEEEEcCccc--------CCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 3799999999987 6999999999999999999999999999999999999999998861 499999999999
Q ss_pred cCCccchhhhhccc------c-eEEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEeeechhh
Q 005900 270 MGDKDFVKPLLQKK------G-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 342 (671)
Q Consensus 270 ~G~~D~~~~~l~~~------g-~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 342 (671)
+|++|+++++++++ | +..|+++.|+||++.++++.... ..++++||+|||||.|++++|++ +.|+|+
T Consensus 73 ~g~~D~t~~al~~~~~~~l~g~~~~~~~~~~~pg~~~~~~~~~~g-----~~~~~~v~~LPG~P~aa~~~~~~-v~P~l~ 146 (152)
T cd00886 73 LAPRDVTPEATRPLLDKELPGFGEAFRALSLEETGTAMLSRAVAG-----IRGGTLIFNLPGSPKAVREALEV-ILPELP 146 (152)
T ss_pred CCCCcCcHHHHHHHhCCcCccHHHHHHHhhcccCCcEEEechhhe-----EECCEEEEECCCCHHHHHHHHHH-HHHHHH
Confidence 99999999999998 4 56899999999998866543100 00258999999999999999999 999999
Q ss_pred cccC
Q 005900 343 HLSG 346 (671)
Q Consensus 343 ~l~G 346 (671)
++..
T Consensus 147 ~~~~ 150 (152)
T cd00886 147 HLLD 150 (152)
T ss_pred HHHH
Confidence 8764
No 21
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=239.03 Aligned_cols=215 Identities=35% Similarity=0.486 Sum_probs=165.8
Q ss_pred ccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc------cCCCCCCCCCceE
Q 005900 424 AGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA------SGAGPDRSGPRAV 497 (671)
Q Consensus 424 aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~------~G~~~D~n~~~l~ 497 (671)
+|..+....+..+.+.|+..+++ |++++|+|++||+|+. .|.+.|.|...+.
T Consensus 164 ~~~~l~p~si~~l~~~gi~~v~i----------------------ykkpvVtV~sTgSel~~~d~~~pg~v~~~n~s~l~ 221 (411)
T KOG2371|consen 164 KGHHLDPSSIGLLHALGIVQVEI----------------------YKKPVVTVSSTGSELNSPDRSGPGMVRDSNRSQLL 221 (411)
T ss_pred ccccCCcccceehhhccccccce----------------------ecccEEEEeeccccccCccccCCceeeecchHHHH
Confidence 34444444566666777777777 9999999999999984 5789999999999
Q ss_pred EEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecc
Q 005900 498 SVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQE 577 (671)
Q Consensus 498 ~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~ 577 (671)
..+.+. |+..+...+++||.+.|++.|.+++ +-+|+|||+||+|++++|+|++|+. .++.+++ ++..+..-
T Consensus 222 ~l~~~~-----Gf~~i~~gvv~D~~~~i~e~L~e~~--~~aDvIlTtGGvsm~~~D~~~~a~~-~l~f~i~-~g~V~mkp 292 (411)
T KOG2371|consen 222 ELFQEH-----GFTAIDAGVVPDDVTRIKEKLREAS--SFADVILTTGGVSMGPRDVTKEALK-VLEFEIH-LGRVDMKP 292 (411)
T ss_pred HHHHHh-----CccccccccccCcHHHHHHHHHHhh--hhccEEEecCCccccchhhhhhHhh-hhheeee-cceeeccC
Confidence 999999 9999999999999999999999998 5899999999999999999999999 6665433 33222333
Q ss_pred cccccchhhhcccccccccceEEEeCCCChhhHHHHHHH-HHHHHHHHHHhhcC---cccccCCCCCCCCCccccccccc
Q 005900 578 SLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEA-LLPALKHALKQIKG---DKREKHPRHVPHSQAVPVDTWEH 653 (671)
Q Consensus 578 ~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~-ilp~L~~~~~~l~g---~~~~~~~~~~~~~~~~~~~~~~~ 653 (671)
|..+++.+.++| +|+.+.++||+|||||.+++.++.. ++|.|+|+.+.++. ..+++|+++..|.+..-.-.|.+
T Consensus 293 gl~~TsfA~l~~--~gir~~k~i~~lPGnpvsAvv~c~lf~~PaLr~m~g~~~~~~ld~r~e~~r~i~~~~~~l~~~~a~ 370 (411)
T KOG2371|consen 293 GLPITSFATLSR--AGIRGPKLIFNLPGNPVSAVVECNLFLLPALRHMEGQLKETSLDDRPEHVRAISHETEFLPARWAQ 370 (411)
T ss_pred CCcccceeeeec--cccccceEEEECCCCcchhhhhhHHHHHHHHHHHhccccccccCcchhhccccccccccCCcchhh
Confidence 333333333333 7888999999999998877766665 58999999999999 45777777777444433347999
Q ss_pred ceeec--CCCCCC-CCccCCC
Q 005900 654 SYKMS--SGGGTE-PSCSCSH 671 (671)
Q Consensus 654 ~~~~~--~~~~~~-~~~~~~~ 671 (671)
+|+.. |.=|.+ ..|+|.|
T Consensus 371 s~gNqiss~l~~~~~a~~l~~ 391 (411)
T KOG2371|consen 371 STGNQISSRLGSEVGAGVLLI 391 (411)
T ss_pred hccccccccccchhhccceee
Confidence 99865 443332 6777765
No 22
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=99.94 E-value=1.1e-27 Score=260.02 Aligned_cols=170 Identities=24% Similarity=0.378 Sum_probs=156.1
Q ss_pred ccccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCCC
Q 005900 416 PATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAG 488 (671)
Q Consensus 416 P~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~~ 488 (671)
..+...+++|+.+....+..|++.|+++|+| |++|||+||+||||+. .|++
T Consensus 143 ~~G~vil~~G~~L~p~~i~llas~Gi~~V~V----------------------~rkprV~IisTGdELv~~~~~l~~gqI 200 (404)
T COG0303 143 AKGDVILRAGTRLTPAEIALLASLGIAEVKV----------------------YRKPRVAIISTGDELVEPGQPLEPGQI 200 (404)
T ss_pred cCCCEeecCCCCcCHHHHHHHHhCCCceEEE----------------------ecCCEEEEEecCccccCCCCCCCCCeE
Confidence 4555667888888888999999999999999 9999999999999985 4789
Q ss_pred CCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHH-HhhhhcC
Q 005900 489 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATK-ELIERET 567 (671)
Q Consensus 489 ~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~-~~~~~~l 567 (671)
+|+|+++|+.+|+++ |+++..+++++||++.|++++++++ ..+|+||||||+|+++.|+++++++ ++++
T Consensus 201 ~dsN~~~l~a~l~~~-----G~e~~~~giv~Dd~~~l~~~i~~a~--~~~DviItsGG~SvG~~D~v~~~l~~~lG~--- 270 (404)
T COG0303 201 YDSNSYMLAALLERA-----GGEVVDLGIVPDDPEALREAIEKAL--SEADVIITSGGVSVGDADYVKAALERELGE--- 270 (404)
T ss_pred EecCHHHHHHHHHHc-----CCceeeccccCCCHHHHHHHHHHhh--hcCCEEEEeCCccCcchHhHHHHHHhcCCc---
Confidence 999999999999999 9999999999999999999999998 4699999999999999999999999 5875
Q ss_pred CCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005900 568 PGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 568 ~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
+.||+++++||+|+ .+|..++++||+|||||.++..+|+.| .|.|..+..
T Consensus 271 ------v~~~gia~kPGkP~---~~g~~~~~~v~gLPGnPvSalv~f~~~v~p~l~~~~g 321 (404)
T COG0303 271 ------VLFHGVAMKPGKPT---GLGRLGGKPVFGLPGNPVSALVNFELFVRPLLRKLLG 321 (404)
T ss_pred ------EEEEeeeecCCCce---EEEEECCcEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999997 899999999999999999999999987 687755544
No 23
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=99.93 E-value=2.1e-28 Score=231.97 Aligned_cols=137 Identities=38% Similarity=0.627 Sum_probs=122.3
Q ss_pred EEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCc
Q 005900 194 AVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDK 273 (671)
Q Consensus 194 ~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~ 273 (671)
|||+|||||+ .|+++|+|+++|.++|+++|+++..+.+++||++.|+++|++++++ +|+||||||+|+|++
T Consensus 1 aIi~~GdEl~--------~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~-~D~VittGG~g~~~~ 71 (144)
T PF00994_consen 1 AIISTGDELL--------SGQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDR-ADLVITTGGTGPGPD 71 (144)
T ss_dssp EEEEECHHHH--------TTSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHT-TSEEEEESSSSSSTT
T ss_pred CEEEECccCc--------CCceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhcc-CCEEEEcCCcCcccC
Confidence 6999999998 6999999999999999999999999999999999999999999874 899999999999999
Q ss_pred cchhhhhcccc-e------EEEecccccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEeeechhhc
Q 005900 274 DFVKPLLQKKG-T------IYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIRH 343 (671)
Q Consensus 274 D~~~~~l~~~g-~------i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~~ 343 (671)
|+|++++++++ + .+||+++++||+|+.++....-.. ..+++||+|||||.++..+|+.++.|+|+|
T Consensus 72 D~t~~a~~~~~~~~l~~~~~~~~~~~~~pg~p~~~~~~~~~~~----~~~~~v~~LPG~P~~~~~~~~~~v~P~L~~ 144 (144)
T PF00994_consen 72 DVTPEALAEAGGRELPGFEELFRGVSMRPGKPTGLAPGAYLSR----KGGKPVFGLPGNPVAAKVMLEVLVLPLLRH 144 (144)
T ss_dssp CHHHHHHHHHSSEE-HHHHHHHHHHHHHSTTTCETEGGGGGTS----SETTEEEEE-SSHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHhcCcccccChHHHHHHHHHhhcccceeeEEEeeC----CCCcEEEEcCCCHHHHHHHHHHHHHHhcCC
Confidence 99999999987 4 889999999999999987621000 003479999999999999999999999985
No 24
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=99.93 E-value=2.9e-27 Score=259.27 Aligned_cols=171 Identities=26% Similarity=0.374 Sum_probs=156.3
Q ss_pred ccccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCCC
Q 005900 416 PATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAG 488 (671)
Q Consensus 416 P~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~~ 488 (671)
.+|...+++|+.+....+..|+++|+.+|+| |++++|+||+||||+. .|++
T Consensus 135 ~~G~~ll~~G~~l~p~~i~~Las~Gi~~v~V----------------------~~~~rv~ii~tGdEl~~~g~~~~~g~i 192 (394)
T cd00887 135 KAGDVLLPAGTRLTPADIGLLASLGIAEVPV----------------------YRRPRVAIISTGDELVEPGEPLAPGQI 192 (394)
T ss_pred CCCCEEECCCCCCCHHHHHHHHhCCCCEEEE----------------------ecCCEEEEEeCCCcccCCCCCCCCCEE
Confidence 3455667888889999999999999999999 9999999999999997 7999
Q ss_pred CCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCC
Q 005900 489 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 568 (671)
Q Consensus 489 ~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~ 568 (671)
+|+|+++|.++|+++ |+++..+.+++||++.|+++|++++ +++|+||||||+|++++|+|++++++++.+
T Consensus 193 ~dsn~~~l~~~l~~~-----G~~~~~~~~v~Dd~~~i~~~l~~a~--~~~DliittGG~s~g~~D~~~~al~~~g~~--- 262 (394)
T cd00887 193 YDSNSYMLAALLREL-----GAEVVDLGIVPDDPEALREALEEAL--EEADVVITSGGVSVGDYDFVKEVLEELGGE--- 262 (394)
T ss_pred EEChHHHHHHHHHHC-----CCEEEEeceeCCCHHHHHHHHHHHh--hCCCEEEEeCCCCCCcchhHHHHHHhCCCe---
Confidence 999999999999999 9999999999999999999999998 469999999999999999999999998542
Q ss_pred CeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005900 569 GLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 569 gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
+.|+++.++||+++ .+|..++++||+|||+|.++..+|+.+ .|+|+++.+
T Consensus 263 -----~~f~gv~~kPG~p~---~~g~~~~~~v~~LPG~P~sa~~~~~~~v~p~l~~l~g 313 (394)
T cd00887 263 -----VLFHGVAMKPGKPL---AFGRLGGKPVFGLPGNPVSALVTFELFVRPALRKLQG 313 (394)
T ss_pred -----EEEEEEEEecCCCE---EEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 78899999999986 788899999999999999999999986 687766554
No 25
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=99.93 E-value=7.9e-27 Score=261.01 Aligned_cols=171 Identities=23% Similarity=0.334 Sum_probs=156.5
Q ss_pred cccccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCC
Q 005900 415 LPATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGA 487 (671)
Q Consensus 415 iP~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~ 487 (671)
+.+|...+++|+.+....++.|++.|+.+|+| |++|+|+||+||||+. .|+
T Consensus 145 i~~Gelll~~G~~L~p~~IglLas~Gi~~V~V----------------------~~rprV~IisTGdELv~pg~~l~~G~ 202 (546)
T PRK14497 145 IPKGSIILRKGEVISHEKIGLLASLGISSVKV----------------------YEKPKIYLIATGDELVEPGNSLSPGK 202 (546)
T ss_pred cCCCCEEECCCCCCCHHHHHHHHhCCCCEEee----------------------ccCCEEEEEEcCCcccCCCCCCCCCc
Confidence 34556678888999999999999999999999 9999999999999986 589
Q ss_pred CCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcC
Q 005900 488 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERET 567 (671)
Q Consensus 488 ~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l 567 (671)
++|+|+++|+++|+++ |+++..+.+++||++.|+++|++++ .++|+||||||+|+|.+|+|++++.++++
T Consensus 203 I~dsNs~~L~a~l~~~-----G~~v~~~~iv~Dd~e~i~~~l~~al--~~~DlVIttGGtS~G~~D~~~~al~~lG~--- 272 (546)
T PRK14497 203 IYESNLHYLYSKLKSE-----GYKIVGLSLLSDDKESIKNEIKRAI--SVADVLILTGGTSAGEKDFVHQAIRELGN--- 272 (546)
T ss_pred EEEhHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHhh--hcCCEEEEcCCccCCCCccHHHHHhhcCc---
Confidence 9999999999999999 9999999999999999999999998 47999999999999999999999999874
Q ss_pred CCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005900 568 PGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 568 ~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
+.+|++.++||+|+ .+|..++++||+|||||.++..+|+.| .|+|+++.+
T Consensus 273 ------v~f~GV~ikPGKP~---~~g~~~gkpV~gLPG~P~Sa~v~f~~fV~P~L~~l~G 323 (546)
T PRK14497 273 ------IIVHGLKIKPGKPT---ILGIVDGKPVIGLPGNIVSTMVVLNMVILEYLKSLYP 323 (546)
T ss_pred ------EEEcceeecCCCcE---EEEEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999997 788889999999999999999999987 587765544
No 26
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=99.93 E-value=6.9e-27 Score=256.22 Aligned_cols=170 Identities=20% Similarity=0.283 Sum_probs=155.7
Q ss_pred ccccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCCC
Q 005900 416 PATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAG 488 (671)
Q Consensus 416 P~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~~ 488 (671)
.+|...+++|+.+....+..|++.|+++|+| |++|+|+||+||||+. .|++
T Consensus 144 ~~G~~ll~~G~~l~p~~i~lLas~G~~~V~V----------------------~~~prV~iistGdEl~~~~~~~~~g~i 201 (411)
T PRK10680 144 SQGAVVFPAGTRLTTAELPVLASLGIAEVPV----------------------VRKVRVALFSTGDELQLPGQPLGDGQI 201 (411)
T ss_pred CCCCEEECCcCCCCHHHHHHHHhCCCCeEEe----------------------cCCCEEEEEccCCeEeCCCCCCCCCEE
Confidence 4555678888999999999999999999999 9999999999999985 6899
Q ss_pred CCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCC
Q 005900 489 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 568 (671)
Q Consensus 489 ~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~ 568 (671)
+|+|+++|+++|+++ |+++..+.+++||++.|+++|+++. .++|+||||||+|.+++|+++++++++++
T Consensus 202 ~dsn~~~l~a~l~~~-----G~~~~~~~~v~Dd~~~i~~~l~~a~--~~~DlvIttGG~S~G~~D~~~~al~~lG~---- 270 (411)
T PRK10680 202 YDTNRLAVHLMLEQL-----GCEVINLGIIRDDPHALRAAFIEAD--SQADVVISSGGVSVGEADYTKTILEELGE---- 270 (411)
T ss_pred EEhHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHhc--cCCCEEEEcCCCCCCCcchHHHHHHhcCc----
Confidence 999999999999999 9999999999999999999999975 58999999999999999999999999873
Q ss_pred CeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005900 569 GLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 569 gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
+.||++.++||+++ .+|..++++||+|||||.++..+|+.| +|+|+++.+
T Consensus 271 -----~~f~~v~~kPGkp~---~~g~~~~~~v~gLPGnP~sa~~~~~~~v~P~l~~l~g 321 (411)
T PRK10680 271 -----IAFWKLAIKPGKPF---AFGKLSNSWFCGLPGNPVSAALTFYQLVQPLLAKLSG 321 (411)
T ss_pred -----EEEEEEEEecCcce---EEEEECCeEEEECCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999997 778889999999999999999999886 697766654
No 27
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=99.93 E-value=9.7e-27 Score=255.39 Aligned_cols=169 Identities=23% Similarity=0.305 Sum_probs=155.0
Q ss_pred cccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCCCC
Q 005900 417 ATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAGP 489 (671)
Q Consensus 417 ~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~~~ 489 (671)
+|...+++|+.+....+..|++.|+.+|.| |++++|+||+||||+. .|+++
T Consensus 161 ~G~~ll~~G~~l~p~~i~~Las~G~~~V~V----------------------~~~prV~IisTGdEl~~~g~~~~~g~i~ 218 (419)
T PRK14690 161 AGDVALPAGRRLTPADLALLSAVGLTRVSV----------------------RRPLRVAVLSTGDELVEPGALAEVGQIY 218 (419)
T ss_pred CCCEEECCCCCCCHHHHHHHHhCCCCeeEe----------------------ecCCEEEEEEccccccCCCCCCCCCeEE
Confidence 455667888999999999999999999999 9999999999999987 59999
Q ss_pred CCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCC
Q 005900 490 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPG 569 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~g 569 (671)
|+|+++|+++|+++ |+++..+.+++||++.|+++|++++ +++|+||||||+|++++|++++++.+++.
T Consensus 219 dsN~~~L~a~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~a~--~~~DlIItTGG~S~G~~D~v~~~l~~~G~----- 286 (419)
T PRK14690 219 DANRPMLLALARRW-----GHAPVDLGRVGDDRAALAARLDRAA--AEADVILTSGGASAGDEDHVSALLREAGA----- 286 (419)
T ss_pred eCHHHHHHHHHHHC-----CCEEEEEeeeCCCHHHHHHHHHHhC--ccCCEEEEcCCccCCCcchHHHHHHhcCC-----
Confidence 99999999999999 9999999999999999999999997 57999999999999999999999999863
Q ss_pred eeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005900 570 LLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 570 i~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
+.++++.++||+++ .+|..++++||+|||||.++..+|+.| .|+|+++.+
T Consensus 287 ----~~~~~v~mkPGkp~---~~~~~~~~pv~gLPGnP~aa~~~~~~~v~P~l~~l~G 337 (419)
T PRK14690 287 ----MQSWRIALKPGRPL---ALGLWQGVPVFGLPGNPVAALVCTLVFARPAMSLLAG 337 (419)
T ss_pred ----EEEcceeecCCCce---EEEEECCeEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 57789999999997 778889999999999999999999997 597765544
No 28
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=99.92 E-value=4.6e-27 Score=222.75 Aligned_cols=140 Identities=36% Similarity=0.559 Sum_probs=123.8
Q ss_pred EEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCC
Q 005900 475 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDV 554 (671)
Q Consensus 475 ~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~ 554 (671)
|||+||||++.|+++|+|+++++++|+++ |+++..+.+++||++.|+++|++++ .++|+||||||+|++++|+
T Consensus 1 aIi~~GdEl~~g~~~d~n~~~l~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~~~--~~~D~VittGG~g~~~~D~ 73 (144)
T PF00994_consen 1 AIISTGDELLSGQIRDSNGPFLAALLEEL-----GIEVIRYGIVPDDPDAIKEALRRAL--DRADLVITTGGTGPGPDDV 73 (144)
T ss_dssp EEEEECHHHHTTSSEBHHHHHHHHHHHHT-----TEEEEEEEEEESSHHHHHHHHHHHH--HTTSEEEEESSSSSSTTCH
T ss_pred CEEEECccCcCCceEEhHHHHHHHHHHHc-----CCeeeEEEEECCCHHHHHHHHHhhh--ccCCEEEEcCCcCcccCCc
Confidence 69999999999999999999999999999 9999999999999999999999998 4789999999999999999
Q ss_pred ChHHHHHhhhhcCCCeeeeeecccccccchhhhccccccccc---ceEEEeCCCChhhHHHHHHHHH-HHHHH
Q 005900 555 TPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRG---STLIINMPGNPNAVAECMEALL-PALKH 623 (671)
Q Consensus 555 T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~---~~~i~~LPG~P~a~~~~~~~il-p~L~~ 623 (671)
|+++++++++++++++++ .++++.++||+++..+..+..+ +++||+|||+|.+++.+++.++ |+|+|
T Consensus 74 t~~a~~~~~~~~l~~~~~--~~~~~~~~pg~p~~~~~~~~~~~~~~~~v~~LPG~P~~~~~~~~~~v~P~L~~ 144 (144)
T PF00994_consen 74 TPEALAEAGGRELPGFEE--LFRGVSMRPGKPTGLAPGAYLSRKGGKPVFGLPGNPVAAKVMLEVLVLPLLRH 144 (144)
T ss_dssp HHHHHHHHSSEE-HHHHH--HHHHHHHHSTTTCETEGGGGGTSSETTEEEEE-SSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCcccccChH--HHHHHHHHhhcccceeeEEEeeCCCCcEEEEcCCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999886 4678899999876444333334 3479999999999999999985 99876
No 29
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=99.92 E-value=1.1e-25 Score=210.41 Aligned_cols=131 Identities=46% Similarity=0.680 Sum_probs=119.0
Q ss_pred EEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCC
Q 005900 473 SVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR 552 (671)
Q Consensus 473 ~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~ 552 (671)
+++||++|||+..|+++|+|+++++++|+++ |+++....+++||++.|+++|+++++ ++|+||||||+|++++
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~i~~~~~--~~DlvittGG~g~g~~ 73 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDL-----GCEVIYAGVVPDDADSIRAALIEASR--EADLVLTTGGTGVGRR 73 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHC-----CCEEEEeeecCCCHHHHHHHHHHHHh--cCCEEEECCCCCCCCC
Confidence 5899999999999999999999999999999 99999999999999999999999984 5999999999999999
Q ss_pred CCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHH
Q 005900 553 DVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPA 620 (671)
Q Consensus 553 D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~ 620 (671)
|+|++++++++++.++| ++..++||++. .+|+.++++||+|||+|.+++.+|+.+ +|.
T Consensus 74 D~t~~ai~~~g~~~~~g-------~~~~~~pg~~~---~~~~~~~~~i~~LPG~p~a~~~~~~~~v~p~ 132 (133)
T cd00758 74 DVTPEALAELGEREAHG-------KGVALAPGSRT---AFGIIGKVLIINLPGSPKSALTTFEALVLPA 132 (133)
T ss_pred cchHHHHHHhcCEEecc-------CcccccCCCce---EEEEECCEEEEECCCCHHHHHHHHHHhheec
Confidence 99999999998742221 48899999875 788899999999999999999999985 574
No 30
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=99.91 E-value=1.1e-25 Score=257.47 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=154.8
Q ss_pred cccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCCCC
Q 005900 417 ATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAGP 489 (671)
Q Consensus 417 ~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~~~ 489 (671)
+|...+++|+.+....+..|+++|+.+|+| |++|+|+||+||||+. .|+++
T Consensus 335 ~Ge~ll~~G~~i~p~~i~lLAs~Gi~~V~V----------------------~~~prV~IistGdEl~~~g~~~~~g~i~ 392 (597)
T PRK14491 335 QGQVALAAGTRLSAPEQGLLASLGFAEVPV----------------------FRRPKVAVFSTGDEVQAPGETLKPNCIY 392 (597)
T ss_pred CCCEeECCcCCCCHHHHHHHHHCCCCeEEe----------------------ccCCEEEEEecCCeeccCCCcCCCCcEE
Confidence 455568888889999999999999999999 9999999999999986 48899
Q ss_pred CCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCC
Q 005900 490 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPG 569 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~g 569 (671)
|+|+++|.++|+++ |+++..+.+++||++.|+++|++++ +++|+||||||+|++++|+++++++++++
T Consensus 393 dsn~~~L~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~a~--~~~DlIIttGG~s~G~~D~~~~al~~lG~----- 460 (597)
T PRK14491 393 DSNRFTIKAMAKKL-----GCEVIDLGIIEDSEAALEATLEQAA--AQADVVISSGGVSVGDADYIKTALAKLGQ----- 460 (597)
T ss_pred eCCHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHhh--hcCCEEEEcCCccCCCcccHHHHHHhcCc-----
Confidence 99999999999999 9999999999999999999999997 47999999999999999999999999863
Q ss_pred eeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005900 570 LLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 570 i~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
++|+++.++||+++ .+|.+++++||+|||||.++..+|+.| .|+|.++.+
T Consensus 461 ----i~f~~v~~kPGkp~---~~g~~~~~~v~~LPGnP~aa~~~~~~~v~P~l~~l~g 511 (597)
T PRK14491 461 ----IDFWRINMRPGRPL---AFGQIGDSPFFGLPGNPVAVMVSFLQFVEPALRKLAG 511 (597)
T ss_pred ----EEEEEEEeecCCcE---EEEEECCEEEEEccCCcHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999996 788899999999999999999999876 698876544
No 31
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=99.90 E-value=1.1e-24 Score=206.57 Aligned_cols=128 Identities=39% Similarity=0.609 Sum_probs=117.9
Q ss_pred EEEEEEEeeccccc-------CCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEee
Q 005900 472 FSVAILTVSDTVAS-------GAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTL 544 (671)
Q Consensus 472 ~~v~IIt~GdEl~~-------G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItt 544 (671)
|+++||++|||++. |+++|+|+++|.++|+++ |+++..+.+++||++.|+++|+++. .++|+||||
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~~~--~~~DliItt 73 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEA-----GFNVSRLGIVPDDPEEIREILRKAV--DEADVVLTT 73 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHC-----CCeEEEEeecCCCHHHHHHHHHHHH--hCCCEEEEC
Confidence 58999999999995 999999999999999999 9999999999999999999999987 479999999
Q ss_pred cCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccc-------cccchhhhcccccccccceEEEeCCCChhhHHHHHHHH
Q 005900 545 GGTGFTPRDVTPEATKELIERETPGLLYVMMQESL-------KVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 617 (671)
Q Consensus 545 GGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~-------~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i 617 (671)
||+|++++|+|++|++++++ ..++++ .++||++. .+|..++++||+|||+|.+++.+|+.+
T Consensus 74 GG~g~g~~D~t~~ai~~~g~---------~~~~gv~~~~~~~~~~PG~~~---~~~~~~~~~v~~LPG~P~aa~~~~~~~ 141 (144)
T TIGR00177 74 GGTGVGPRDVTPEALEELGE---------KEIPGFGEYFTAVLSRPGKPA---TAGVRGGTLIFGLPGNPVSALVTFEVL 141 (144)
T ss_pred CCCCCCCCccHHHHHHHhCc---------EEEeeeccccchhhCCCCCce---EEEEECCEEEEECCCCHHHHHHHHHHH
Confidence 99999999999999999985 455566 89999986 677889999999999999999999886
Q ss_pred H
Q 005900 618 L 618 (671)
Q Consensus 618 l 618 (671)
+
T Consensus 142 v 142 (144)
T TIGR00177 142 V 142 (144)
T ss_pred c
Confidence 3
No 32
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=99.90 E-value=6.9e-25 Score=254.69 Aligned_cols=169 Identities=24% Similarity=0.374 Sum_probs=154.6
Q ss_pred cccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc-------cCCCC
Q 005900 417 ATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAGP 489 (671)
Q Consensus 417 ~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~-------~G~~~ 489 (671)
+|...+++|+.+....+..|+++|+.+|+| |++|+|+||+||||+. .|+++
T Consensus 154 ~G~~l~~~g~~i~p~~i~~las~g~~~v~v----------------------~~~prv~vi~tG~El~~~~~~~~~g~i~ 211 (633)
T PRK14498 154 AGELILPKGTRLTPRDIGALAAGGVAEVPV----------------------YKKPRVGIISTGDELVEPGEPLKPGKIY 211 (633)
T ss_pred CCCEEECCCCCCCHHHHHHHHHCCCCEEEE----------------------ecCcEEEEEecCccccCCCCCCCCCEEE
Confidence 455667888888889999999999999999 9999999999999986 58999
Q ss_pred CCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCC
Q 005900 490 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPG 569 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~g 569 (671)
|+|+++|.++|+++ |+++..+.+++||++.|+++|++++ .++|+||||||+|+|++|+|++++.++++
T Consensus 212 dsn~~~l~~~l~~~-----g~~~~~~~~v~Dd~~~i~~~l~~~~--~~~D~iIttGG~s~g~~D~~~~~l~~~g~----- 279 (633)
T PRK14498 212 DVNSYTLAAAVEEA-----GGEPVRYGIVPDDEEELEAALRKAL--KECDLVLLSGGTSAGAGDVTYRVIEELGE----- 279 (633)
T ss_pred EChHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHH--hcCCEEEECCCCcCCCcccHHHHHHhcCC-----
Confidence 99999999999999 9999999999999999999999997 47999999999999999999999998763
Q ss_pred eeeeeecccccccchhhhcccccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005900 570 LLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 570 i~e~~~~~~~~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
++|+++.++||+++ .+|..++++||+|||||.+++.+|+.+ .|+|+++.+
T Consensus 280 ----~~~~~v~~~PG~~~---~~g~~~~~~v~~LPG~p~aa~~~~~~~v~P~l~~l~g 330 (633)
T PRK14498 280 ----VLVHGVAIKPGKPT---ILGVIGGKPVVGLPGYPVSALTIFEEFVAPLLRKLAG 330 (633)
T ss_pred ----EEEeeEeecCCCCE---EEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999986 788899999999999999999999975 687766555
No 33
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=99.90 E-value=3.9e-24 Score=225.58 Aligned_cols=148 Identities=22% Similarity=0.376 Sum_probs=135.2
Q ss_pred ccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEe
Q 005900 436 ISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVAT 515 (671)
Q Consensus 436 l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~ 515 (671)
+...|+.+|.+ |++++++||+||||+..|+++|+|++++.++|+++ |+++..+
T Consensus 146 ~~~~gi~~V~v----------------------~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~-----G~~v~~~ 198 (312)
T cd03522 146 ARDGPLLRVAP----------------------FRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAAL-----GVELVEQ 198 (312)
T ss_pred HHhCCCcEEEe----------------------cCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHC-----CCEEEEE
Confidence 44568999998 99999999999999999999999999999999999 9999999
Q ss_pred ccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhcccccccc
Q 005900 516 DVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIR 595 (671)
Q Consensus 516 ~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~lsr~~~G~~ 595 (671)
.+++||++.|+++|+++++ +++|+||||||+|++++|+|++|+.+++.+ +.++++.++||+++ ..|..
T Consensus 199 ~iv~Dd~~~I~~ai~~~~~-~g~DlIItTGGtsvg~~D~tp~Ai~~~G~e--------i~~~Gv~v~PG~~l---~~g~~ 266 (312)
T cd03522 199 VIVPHDEAAIAAAIAEALE-AGAELLILTGGASVDPDDVTPAAIRAAGGE--------VIRYGMPVDPGNLL---LLGYL 266 (312)
T ss_pred EEcCCCHHHHHHHHHHHhc-CCCCEEEEeCCcccCCcchHHHHHHhcCce--------EEEeeecccCCceE---EEEEE
Confidence 9999999999999999985 459999999999999999999999999753 78899999999998 55678
Q ss_pred cceEEEeCCCChhhHHH-HHHHHHHHHH
Q 005900 596 GSTLIINMPGNPNAVAE-CMEALLPALK 622 (671)
Q Consensus 596 ~~~~i~~LPG~P~a~~~-~~~~ilp~L~ 622 (671)
++++||+|||+|.+++. .++.++|.+.
T Consensus 267 ~~~pVigLPG~p~s~~~t~~d~VLprll 294 (312)
T cd03522 267 GGVPVIGLPGCARSPKLNGFDLVLPRLL 294 (312)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 6788899664
No 34
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=99.89 E-value=8.6e-25 Score=204.93 Aligned_cols=126 Identities=31% Similarity=0.444 Sum_probs=111.8
Q ss_pred EEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCc
Q 005900 194 AVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDK 273 (671)
Q Consensus 194 ~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~ 273 (671)
+|++|||||++ .++++|+|+++|.++|+++|+++....+++||++.|+++|+++++ ++|+||||||+|+|++
T Consensus 1 ~vi~~GdEi~~-------~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~-~~dliittGG~g~g~~ 72 (135)
T smart00852 1 AIISTGDELLS-------GGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALE-RADLVITTGGTGPGPD 72 (135)
T ss_pred CEEEEechhhc-------CCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHh-CCCEEEEcCCCCCCCC
Confidence 58999999984 358999999999999999999999999999999999999999987 4999999999999999
Q ss_pred cchhhhhcccc--eEEEecccccCCCccee-----eEeccccCchhhhhhhhhccCCCCceeEEEEEe
Q 005900 274 DFVKPLLQKKG--TIYFNKVCMKPGKPLTF-----AEINIKPTDDVMVNKILAFGLPGNPVSCIVCFH 334 (671)
Q Consensus 274 D~~~~~l~~~g--~i~f~~v~~~PGkp~~~-----a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~ 334 (671)
|++++++++++ ++.|++++|+||+++.+ +.+.+ ..+++||+|||||.++..+|+
T Consensus 73 D~t~~~l~~~~~~~~~~~~~~~~Pg~~~~~~~~~~~~~~g-------~~~~~i~~LPG~P~~~~~~~~ 133 (135)
T smart00852 73 DVTPEAVAEALGKELPGFGEAMRPGGAPTVLANLSGTAPG-------FRGKLVFGLPGSPVAARAMLE 133 (135)
T ss_pred cCcHHHHHHHhCCcCCChhhhhcccCCccccccccCcCCe-------EeCcEEEECCCCHHHHHHHHH
Confidence 99999999974 79999999999999877 44421 013699999999999987765
No 35
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=99.89 E-value=3.5e-24 Score=246.68 Aligned_cols=174 Identities=21% Similarity=0.318 Sum_probs=151.7
Q ss_pred ccccceecccceEEEEEEecccCCCCCcceeeeEecccccCCCCceeeccCCCceEEEEEEEEeecccc--------cCC
Q 005900 416 PATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA--------SGA 487 (671)
Q Consensus 416 P~g~~~i~aG~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIt~GdEl~--------~G~ 487 (671)
.+|...+++|+.+....+..|+++|+.+|.| |++|+|+||+||||+. .|+
T Consensus 148 ~~G~~ll~~G~~l~p~~i~lLas~Gi~~V~V----------------------~~kprV~visTGdELv~~g~~~~~~g~ 205 (659)
T PLN02699 148 EKDAKVLKAGERLGASEIGLLATVGVTMVKV----------------------YPRPTVAILSTGDELVEPTTGTLGRGQ 205 (659)
T ss_pred CCCCEEECCcCCCCHHHHHHHHHCCCCeEEe----------------------ecCCeEEEEeCCcccccCCCCCCCCCc
Confidence 3455667888888888899999999999999 9999999999999996 599
Q ss_pred CCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcC
Q 005900 488 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERET 567 (671)
Q Consensus 488 ~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l 567 (671)
++|+|+++|+++|+++ |+++..+.+++||++.|+++|+++++ +++|+||||||+|+|++|++++++++.+.
T Consensus 206 i~dsN~~~L~a~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~DlvItTGGts~G~~D~v~~~l~~~G~--- 276 (659)
T PLN02699 206 IRDSNRAMLLAAAIQQ-----QCKVVDLGIARDDEEELERILDEAIS-SGVDILLTSGGVSMGDRDFVKPLLEKRGT--- 276 (659)
T ss_pred EEeChHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHhhc-CCCCEEEECCCCCCCCCccHHHHHHhcCc---
Confidence 9999999999999999 99999999999999999999999874 47999999999999999999999987753
Q ss_pred CCeeeeeecccccccchhhhccc------ccccccceEEEeCCCChhhHHHHHHHH-HHHHHHHHH
Q 005900 568 PGLLYVMMQESLKVTPFAMLSRS------AAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 626 (671)
Q Consensus 568 ~gi~e~~~~~~~~~~pg~~lsr~------~~G~~~~~~i~~LPG~P~a~~~~~~~i-lp~L~~~~~ 626 (671)
+.|+++.++||+++.-+ .+|..++++||+|||||.++..+|+.| .|+|+++..
T Consensus 277 ------i~f~gv~~kPGkp~~~a~~~~~~~~g~~~~~~v~gLPGnP~sa~~~f~~~v~P~l~~l~G 336 (659)
T PLN02699 277 ------VYFSKVLMKPGKPLTFAEIDAKSAPSNSKKMLAFGLPGNPVSCLVCFNLFVVPAIRYLAG 336 (659)
T ss_pred ------ceEEEEEecCCCceeeEEecccccccccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 78899999999997322 123334579999999999999999986 697765544
No 36
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=99.88 E-value=1.5e-23 Score=213.04 Aligned_cols=144 Identities=26% Similarity=0.357 Sum_probs=118.9
Q ss_pred EEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCC
Q 005900 472 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 551 (671)
Q Consensus 472 ~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~ 551 (671)
++++||++|||++.|++.|+|+.||++.|.+. |+++.+..+|+||++.|.++|+.+++ ++|+||+|||+|||+
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~-----G~~v~~~~~VgD~~~~I~~~l~~a~~--r~D~vI~tGGLGPT~ 74 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTEL-----GVDLARITTVGDNPDRIVEALREASE--RADVVITTGGLGPTH 74 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHhc-----CceEEEEEecCCCHHHHHHHHHHHHh--CCCEEEECCCcCCCc
Confidence 68999999999999999999999999999999 99999999999999999999999984 699999999999999
Q ss_pred CCCChHHHHHhhhhcCCCee-------eeeeccccccc----chhhhccc----------cccc---ccceEEEeCCCCh
Q 005900 552 RDVTPEATKELIERETPGLL-------YVMMQESLKVT----PFAMLSRS----------AAGI---RGSTLIINMPGNP 607 (671)
Q Consensus 552 ~D~T~eal~~~~~~~l~gi~-------e~~~~~~~~~~----pg~~lsr~----------~~G~---~~~~~i~~LPG~P 607 (671)
||+|.|++++++++++.-.+ +.+..++..+. .++.++.+ ++|+ .+++.++.|||+|
T Consensus 75 DDiT~e~vAka~g~~lv~~~~al~~i~~~~~~r~~~~~~~~~K~A~~P~Ga~~l~NpvG~APG~~v~~~~~~v~~lPGvP 154 (255)
T COG1058 75 DDLTAEAVAKALGRPLVLDEEALAMIEEKYAKRGREMTEANRKQAMLPEGAEVLDNPVGTAPGFVVEGNGKNVYVLPGVP 154 (255)
T ss_pred cHhHHHHHHHHhCCCcccCHHHHHHHHHHHHhcCCCCChhhhhhccCCCCCEeCCCCCCCCCeeEEecCCeEEEEeCCCC
Confidence 99999999999999875322 22222222222 22333222 4555 3679999999999
Q ss_pred hhHHHHHHHHH-HHHH
Q 005900 608 NAVAECMEALL-PALK 622 (671)
Q Consensus 608 ~a~~~~~~~il-p~L~ 622 (671)
++++.||+.++ |++.
T Consensus 155 ~Em~~M~e~~~~~~l~ 170 (255)
T COG1058 155 SEMKPMFENVLLPLLT 170 (255)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 99999999864 6554
No 37
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=99.87 E-value=2.2e-23 Score=219.08 Aligned_cols=136 Identities=20% Similarity=0.342 Sum_probs=119.9
Q ss_pred eEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccC
Q 005900 192 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG 271 (671)
Q Consensus 192 rV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G 271 (671)
+++||.+|||+. .|+++|+|+++|.++|+++|+++..+.++|||++.|+++|++++.+++|+||||||+|+|
T Consensus 157 ~~aIltvsde~~--------~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g 228 (312)
T PRK03604 157 SAAVLVLSDSIA--------AGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLG 228 (312)
T ss_pred EEEEEEECCcCC--------CCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCC
Confidence 688999999975 799999999999999999999999999999999999999999854369999999999999
Q ss_pred CccchhhhhcccceEEEeccc---------ccCCC---cceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEeeec
Q 005900 272 DKDFVKPLLQKKGTIYFNKVC---------MKPGK---PLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVP 339 (671)
Q Consensus 272 ~~D~~~~~l~~~g~i~f~~v~---------~~PGk---p~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P 339 (671)
++|+++++++++++..|+|++ ++||+ |..+|..+ +++||+|||||.++..+|++| .|
T Consensus 229 ~~D~tpeAl~~lg~~~~~Gvae~ir~~g~~~~Pga~lsr~~~G~~~----------~tlI~~LPG~P~aa~~~~~~l-lp 297 (312)
T PRK03604 229 PRDVTPEALAPLLERRLPGIAEALRSWGQGRTPTAMLSRLVAGMIG----------NSLVVALPGSPGGASDALAVL-LP 297 (312)
T ss_pred CCccHHHHHHHhcCccccchHHHHHhcccCCCCCcccCcceEEEEC----------CEEEEECCCCHHHHHHHHHHH-HH
Confidence 999999999999875555555 47997 56678775 589999999999999999865 88
Q ss_pred hhhcccC
Q 005900 340 AIRHLSG 346 (671)
Q Consensus 340 ~L~~l~G 346 (671)
.|.++.-
T Consensus 298 ~l~h~~~ 304 (312)
T PRK03604 298 ALFHAFA 304 (312)
T ss_pred HHHHHHH
Confidence 8877643
No 38
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=99.87 E-value=2.6e-23 Score=202.09 Aligned_cols=143 Identities=29% Similarity=0.395 Sum_probs=118.3
Q ss_pred EEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCC
Q 005900 473 SVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR 552 (671)
Q Consensus 473 ~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~ 552 (671)
+++||++|||++.|++.|+|+++|++.|++. |+++..+.+++||++.|+++|++++ .++|+||||||+|+|++
T Consensus 1 ~v~Ii~~GdEl~~G~i~d~n~~~l~~~L~~~-----G~~v~~~~~v~Dd~~~I~~~l~~~~--~~~dlVIttGG~G~t~~ 73 (170)
T cd00885 1 TAEIIAIGDELLSGQIVDTNAAFLAKELAEL-----GIEVYRVTVVGDDEDRIAEALRRAS--ERADLVITTGGLGPTHD 73 (170)
T ss_pred CEEEEEECccccCCeEEEhHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHH--hCCCEEEECCCCCCCCC
Confidence 5799999999999999999999999999999 9999999999999999999999998 47999999999999999
Q ss_pred CCChHHHHHhhhhcCCCeeeeee---cc----cccc----cchhhhccc----------cccc---ccceEEEeCCCChh
Q 005900 553 DVTPEATKELIERETPGLLYVMM---QE----SLKV----TPFAMLSRS----------AAGI---RGSTLIINMPGNPN 608 (671)
Q Consensus 553 D~T~eal~~~~~~~l~gi~e~~~---~~----~~~~----~pg~~lsr~----------~~G~---~~~~~i~~LPG~P~ 608 (671)
|+|+||++++++++++++++.+. .+ +..+ ..++.++++ +.|+ .+++.+|.|||+|.
T Consensus 74 D~t~ea~~~~~~~~l~~~~e~~~~i~~~~~~~~~~~~~~~~r~a~~p~ga~~i~N~~G~apg~~~~~~~~~i~~lPG~P~ 153 (170)
T cd00885 74 DLTREAVAKAFGRPLVLDEEALERIEARFARRGREMTEANLKQAMLPEGATLLPNPVGTAPGFSVEHNGKNVFLLPGVPS 153 (170)
T ss_pred ChHHHHHHHHhCCCcccCHHHHHHHHHHHHhcCCccChhhhheecCCCCCEECcCCCCEeeEEEEEeCCeEEEEECCChH
Confidence 99999999999999998877631 11 1111 112222222 2333 35679999999999
Q ss_pred hHHHHHHH-HHHHHH
Q 005900 609 AVAECMEA-LLPALK 622 (671)
Q Consensus 609 a~~~~~~~-ilp~L~ 622 (671)
+++.||+. +.|+|.
T Consensus 154 e~~~m~~~~~~~~l~ 168 (170)
T cd00885 154 EMKPMLEEEVLPRLR 168 (170)
T ss_pred HHHHHHHHHHHHHHh
Confidence 99999995 678764
No 39
>PRK01215 competence damage-inducible protein A; Provisional
Probab=99.86 E-value=9.9e-23 Score=210.88 Aligned_cols=147 Identities=24% Similarity=0.334 Sum_probs=123.1
Q ss_pred eEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCC
Q 005900 470 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 549 (671)
Q Consensus 470 ~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~ 549 (671)
.+++++||++|||++.|++.|+|+++|++.|++. |+++....+|+||++.|+++|+.+++ ++|+||||||+|+
T Consensus 2 ~~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~-----G~~v~~~~~v~Dd~~~I~~~l~~a~~--~~DlVIttGG~g~ 74 (264)
T PRK01215 2 DKWFAWIITIGNELLIGRTVNTNASWIARRLTYL-----GYTVRRITVVMDDIEEIVSAFREAID--RADVVVSTGGLGP 74 (264)
T ss_pred CCCEEEEEEEChhccCCeEEEhhHHHHHHHHHHC-----CCeEEEEEEeCCCHHHHHHHHHHHhc--CCCEEEEeCCCcC
Confidence 3689999999999999999999999999999999 99999999999999999999999984 7899999999999
Q ss_pred CCCCCChHHHHHhhhhcCCCeeeeeecc-------ccccc----chhhhccc----------cccc---ccceEEEeCCC
Q 005900 550 TPRDVTPEATKELIERETPGLLYVMMQE-------SLKVT----PFAMLSRS----------AAGI---RGSTLIINMPG 605 (671)
Q Consensus 550 ~~~D~T~eal~~~~~~~l~gi~e~~~~~-------~~~~~----pg~~lsr~----------~~G~---~~~~~i~~LPG 605 (671)
|+||+|+++++++++++++..++.++.. +..+. ..++++++ +.|+ .++++||+|||
T Consensus 75 t~dD~t~eaia~~~g~~l~~~~e~~~~l~~~~~~~~~~~~~~~~k~A~~P~ga~~l~N~~Gtapg~~~~~~~~~i~~LPG 154 (264)
T PRK01215 75 TYDDKTNEGFAKALGVELELNEDALRMILEKYEKRGIPLTPERKKMAMMPPGAVPLENPVGTAPGILIEHGGKDIVALPG 154 (264)
T ss_pred ChhhhHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCCChhHHheeeCCCCCEecCCCCCcCCeEEEEECCEEEEEeCC
Confidence 9999999999999999998876554421 22221 23333332 2232 47789999999
Q ss_pred ChhhHHHHHHH-HHHHHHH
Q 005900 606 NPNAVAECMEA-LLPALKH 623 (671)
Q Consensus 606 ~P~a~~~~~~~-ilp~L~~ 623 (671)
+|.+++.||+. ++|+|..
T Consensus 155 ~P~e~~~m~~~~v~p~l~~ 173 (264)
T PRK01215 155 VPREMEAIFENFVEPLLKN 173 (264)
T ss_pred ChHHHHHHHHHHHHHHHhc
Confidence 99999999998 4697764
No 40
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=99.86 E-value=2.6e-22 Score=188.10 Aligned_cols=127 Identities=35% Similarity=0.532 Sum_probs=109.3
Q ss_pred EEEEeecccccC-CCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCC
Q 005900 475 AILTVSDTVASG-AGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRD 553 (671)
Q Consensus 475 ~IIt~GdEl~~G-~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D 553 (671)
+||++|||+..+ +++|+|+++++++|+++ |+++..+.+++||++.|+++|+++.+ ++|+||||||+|++++|
T Consensus 1 ~vi~~GdEi~~~~~~~d~~~~~l~~~l~~~-----G~~~~~~~~v~Dd~~~I~~~l~~~~~--~~dliittGG~g~g~~D 73 (135)
T smart00852 1 AIISTGDELLSGGQIYDSNGPALAELLTEL-----GIEVTRYVIVPDDKEAIKEALREALE--RADLVITTGGTGPGPDD 73 (135)
T ss_pred CEEEEechhhcCCCcccCcHHHHHHHHHHC-----CCeEEEEEEeCCCHHHHHHHHHHHHh--CCCEEEEcCCCCCCCCc
Confidence 489999999987 78999999999999999 99999999999999999999999984 69999999999999999
Q ss_pred CChHHHHHhhhhcCCCeeeeeecccccccchhhhc------ccccccccceEEEeCCCChhhHHHHHHH
Q 005900 554 VTPEATKELIERETPGLLYVMMQESLKVTPFAMLS------RSAAGIRGSTLIINMPGNPNAVAECMEA 616 (671)
Q Consensus 554 ~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~ls------r~~~G~~~~~~i~~LPG~P~a~~~~~~~ 616 (671)
+|++++++++++++ .++++.++||++.. +...|+. +++||+|||+|.++..+|+.
T Consensus 74 ~t~~~l~~~~~~~~-------~~~~~~~~Pg~~~~~~~~~~~~~~g~~-~~~i~~LPG~P~~~~~~~~~ 134 (135)
T smart00852 74 VTPEAVAEALGKEL-------PGFGEAMRPGGAPTVLANLSGTAPGFR-GKLVFGLPGSPVAARAMLEL 134 (135)
T ss_pred CcHHHHHHHhCCcC-------CChhhhhcccCCccccccccCcCCeEe-CcEEEECCCCHHHHHHHHHh
Confidence 99999999987654 45667777776642 2233333 46999999999999999874
No 41
>PRK01215 competence damage-inducible protein A; Provisional
Probab=99.85 E-value=1.5e-22 Score=209.51 Aligned_cols=137 Identities=22% Similarity=0.342 Sum_probs=121.0
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
.+|||+||+|||||+ .|+++|+|+++|++.|+++|+++....+++||++.|.++|+++++ .+|+||||||+
T Consensus 2 ~~~~v~Ii~~GdEll--------~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~-~~DlVIttGG~ 72 (264)
T PRK01215 2 DKWFAWIITIGNELL--------IGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAID-RADVVVSTGGL 72 (264)
T ss_pred CCCEEEEEEEChhcc--------CCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc-CCCEEEEeCCC
Confidence 479999999999998 699999999999999999999999999999999999999999997 48999999999
Q ss_pred ccCCccchhhhhccc-c-eEEEe-----------------------cccccC-C----------CcceeeEeccccCchh
Q 005900 269 SMGDKDFVKPLLQKK-G-TIYFN-----------------------KVCMKP-G----------KPLTFAEINIKPTDDV 312 (671)
Q Consensus 269 s~G~~D~~~~~l~~~-g-~i~f~-----------------------~v~~~P-G----------kp~~~a~~~~~~~~~~ 312 (671)
|++.+|+|++++++. | ++.+| ++++.| | .|-.+...+
T Consensus 73 g~t~dD~t~eaia~~~g~~l~~~~e~~~~l~~~~~~~~~~~~~~~~k~A~~P~ga~~l~N~~Gtapg~~~~~~------- 145 (264)
T PRK01215 73 GPTYDDKTNEGFAKALGVELELNEDALRMILEKYEKRGIPLTPERKKMAMMPPGAVPLENPVGTAPGILIEHG------- 145 (264)
T ss_pred cCChhhhHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCCChhHHheeeCCCCCEecCCCCCcCCeEEEEEC-------
Confidence 999999999999996 6 66666 677788 5 223333332
Q ss_pred hhhhhhhccCCCCceeEEEEEeEeeechhhcc
Q 005900 313 MVNKILAFGLPGNPVSCIVCFHLYIVPAIRHL 344 (671)
Q Consensus 313 ~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~~l 344 (671)
+++||+|||+|.++..+|+.++.|+|+++
T Consensus 146 ---~~~i~~LPG~P~e~~~m~~~~v~p~l~~~ 174 (264)
T PRK01215 146 ---GKDIVALPGVPREMEAIFENFVEPLLKNR 174 (264)
T ss_pred ---CEEEEEeCCChHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999876
No 42
>PRK03673 hypothetical protein; Provisional
Probab=99.83 E-value=1e-21 Score=213.33 Aligned_cols=146 Identities=21% Similarity=0.292 Sum_probs=119.7
Q ss_pred EEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCC
Q 005900 472 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 551 (671)
Q Consensus 472 ~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~ 551 (671)
|+++||+||||++.|++.|+|+++|++.|++. |+++.+..+++||++.|+++|+.++ .++|+||||||+|+|+
T Consensus 2 ~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~-----G~~v~~~~~v~D~~~~i~~~l~~a~--~~~DlVI~tGGlGpt~ 74 (396)
T PRK03673 2 LRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQ-----GLPLSRRNTVGDNLDALVAILRERS--QHADVLIVNGGLGPTS 74 (396)
T ss_pred CEEEEEEecccCCCCeEEEhHHHHHHHHHHHC-----CCEEEEEEEcCCCHHHHHHHHHHHh--ccCCEEEEcCCCCCCC
Confidence 78999999999999999999999999999999 9999999999999999999999987 5899999999999999
Q ss_pred CCCChHHHHHhhhhcCCCee-------eeeecccccc----cchhhhcc---------c-cccc---ccceEEEeCCCCh
Q 005900 552 RDVTPEATKELIERETPGLL-------YVMMQESLKV----TPFAMLSR---------S-AAGI---RGSTLIINMPGNP 607 (671)
Q Consensus 552 ~D~T~eal~~~~~~~l~gi~-------e~~~~~~~~~----~pg~~lsr---------~-~~G~---~~~~~i~~LPG~P 607 (671)
||+|+|++++++++++.-.+ ++|...+..+ ..++.++. + ++|+ .+++.||.|||+|
T Consensus 75 dD~t~~avA~a~g~~L~~d~e~~~~i~~~f~~~~~~m~~~n~kQA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~LPGvP 154 (396)
T PRK03673 75 DDLSALAAATAAGEGLVLHEEWLAEMERFFAERGRVMAPSNRKQAELPASAEMIDNPVGTACGFALQLNRCLMFFTPGVP 154 (396)
T ss_pred cccHHHHHHHHcCCCceeCHHHHHHHHHHHHhcCCCCChhHHhhccCCCCCeeccCCCccCCcEEEEECCEEEEEECCCh
Confidence 99999999999998864322 2222222222 12222222 2 3454 3678999999999
Q ss_pred hhHHHHHHH-HHHHHHHH
Q 005900 608 NAVAECMEA-LLPALKHA 624 (671)
Q Consensus 608 ~a~~~~~~~-ilp~L~~~ 624 (671)
.+++.||+. ++|+|...
T Consensus 155 ~Emk~M~~~~v~p~L~~~ 172 (396)
T PRK03673 155 SEFKVMVEQEILPRLRER 172 (396)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999987 78988753
No 43
>PRK03670 competence damage-inducible protein A; Provisional
Probab=99.83 E-value=3.9e-21 Score=197.40 Aligned_cols=144 Identities=28% Similarity=0.321 Sum_probs=115.7
Q ss_pred EEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCC
Q 005900 472 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 551 (671)
Q Consensus 472 ~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~ 551 (671)
++++||+||||++.|++.|+|+++|++.|++. |+++..+.+|+||++.|+++|+.++. ..+|+||||||+|+|+
T Consensus 1 m~a~Ii~iGdEll~G~i~dtN~~~la~~L~~~-----G~~v~~~~iV~Dd~~~I~~~l~~a~~-~~~DlVIttGGlGpt~ 74 (252)
T PRK03670 1 MFAEIITVGDELLTGNTVDSNSAFIAQKLTEK-----GYWVRRITTVGDDVEEIKSVVLEILS-RKPEVLVISGGLGPTH 74 (252)
T ss_pred CEEEEEEeCCcCcCCeEEehhHHHHHHHHHHC-----CCEEEEEEEcCCCHHHHHHHHHHHhh-CCCCEEEECCCccCCC
Confidence 57999999999999999999999999999999 99999999999999999999999874 4589999999999999
Q ss_pred CCCChHHHHHhhhhcCCCeeee-------eecccc-------cccc----hhhhccc----------cccc---ccceEE
Q 005900 552 RDVTPEATKELIERETPGLLYV-------MMQESL-------KVTP----FAMLSRS----------AAGI---RGSTLI 600 (671)
Q Consensus 552 ~D~T~eal~~~~~~~l~gi~e~-------~~~~~~-------~~~p----g~~lsr~----------~~G~---~~~~~i 600 (671)
||+|+||+++++++++...+++ +...+. .+.+ ++.++.+ +.|+ .+++.|
T Consensus 75 dD~T~eava~a~g~~l~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~kmA~~P~ga~~l~N~~g~ApG~~~~~~~~~v 154 (252)
T PRK03670 75 DDVTMLAVAEALGRELVLCEDCLERIKEFYEELYKKGLIDDPTLNEARKKMAYLPEGAEPLENTEGAAPGAYIEHKGTKI 154 (252)
T ss_pred CCchHHHHHHHhCCCCcCCHHHHHHHHHHHHHhcccccccccccChHHHheeCCCCCCEECCCCCCcCceEEEEECCeEE
Confidence 9999999999999987643321 111110 1111 1222211 3343 356789
Q ss_pred EeCCCChhhHHHHHHH-HHHHH
Q 005900 601 INMPGNPNAVAECMEA-LLPAL 621 (671)
Q Consensus 601 ~~LPG~P~a~~~~~~~-ilp~L 621 (671)
|+|||+|.+++.||+. ++|.|
T Consensus 155 ~~lPGvP~e~~~M~~~~v~p~l 176 (252)
T PRK03670 155 FVLPGMPREMKAMLEKEVLPRL 176 (252)
T ss_pred EEeCCChHHHHHHHHHHHHHhh
Confidence 9999999999999998 67865
No 44
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=99.81 E-value=1.7e-20 Score=205.54 Aligned_cols=146 Identities=21% Similarity=0.329 Sum_probs=116.9
Q ss_pred EEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCC
Q 005900 472 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 551 (671)
Q Consensus 472 ~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~ 551 (671)
|+++||+||||++.|++.|+|+++|+++|+++ |+++.++.+|+||++.|+++|++++ .++|+||||||+|+|+
T Consensus 1 m~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~-----G~~v~~~~~v~Dd~~~i~~~l~~a~--~~~DlVIttGGlgpt~ 73 (413)
T TIGR00200 1 LKAEIISVGDELLLGQIVNTNAQWLADFLAHQ-----GLPLSRRTTVGDNPERLKTIIRIAS--ERADVLIFNGGLGPTS 73 (413)
T ss_pred CEEEEEEECccccCCcEEEchHHHHHHHHHHC-----CCeEEEEEEeCCCHHHHHHHHHHHh--cCCCEEEEcCCCCCCC
Confidence 58999999999999999999999999999999 9999999999999999999999998 5799999999999999
Q ss_pred CCCChHHHHHhhhhcCCC-------eeeeeecccccccc----hhhhcc---------c-ccc---cc-cceEEEeCCCC
Q 005900 552 RDVTPEATKELIERETPG-------LLYVMMQESLKVTP----FAMLSR---------S-AAG---IR-GSTLIINMPGN 606 (671)
Q Consensus 552 ~D~T~eal~~~~~~~l~g-------i~e~~~~~~~~~~p----g~~lsr---------~-~~G---~~-~~~~i~~LPG~ 606 (671)
||+|++++++++++++.- +.+.|...+..+.+ ++.++. + ++| .. +++.||+|||+
T Consensus 74 dD~t~eava~~~g~~l~~~~~~~~~i~~~~~~~g~~~~~~n~kqA~~p~ga~~l~N~~G~APG~~~~~~~~~~i~~LPG~ 153 (413)
T TIGR00200 74 DDLTAETIATAKGEPLVLNEAWLKEIERYFHETGRVMAPNNRKQALLPAGAEFLANPVGTAPGMFAVQLNRCLMLFTPGV 153 (413)
T ss_pred cccHHHHHHHHhCCCcEECHHHHHHHHHHHHhcCCCCChHHHHhcCCCCCCEECCCCCCCCCeeEEEecCCEEEEEeCCC
Confidence 999999999998887642 22222222222211 111111 1 334 23 47899999999
Q ss_pred hhhHHHHHHHH-HHHHHHH
Q 005900 607 PNAVAECMEAL-LPALKHA 624 (671)
Q Consensus 607 P~a~~~~~~~i-lp~L~~~ 624 (671)
|.+++.||+.+ +|+|...
T Consensus 154 P~e~~~m~~~~v~p~l~~~ 172 (413)
T TIGR00200 154 PSEFRVMVEHEALPRLRER 172 (413)
T ss_pred cHHHHHHHHHHhhHHHHHh
Confidence 99999999985 7988653
No 45
>PRK00549 competence damage-inducible protein A; Provisional
Probab=99.80 E-value=2.9e-20 Score=204.55 Aligned_cols=145 Identities=23% Similarity=0.322 Sum_probs=120.4
Q ss_pred EEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCC
Q 005900 472 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 551 (671)
Q Consensus 472 ~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~ 551 (671)
|+++||++|||++.|+++|+|+++|++.|++. |+++..+.+|+||++.|+++|+.+. .++|+||||||+|+|+
T Consensus 1 m~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~-----G~~v~~~~~v~Dd~~~I~~~l~~a~--~~~DlVItTGGlGpt~ 73 (414)
T PRK00549 1 MKAEIIAVGTELLLGQIVNTNAQFLSEKLAEL-----GIDVYHQTVVGDNPERLLSALEIAE--ERSDLIITTGGLGPTK 73 (414)
T ss_pred CEEEEEEecccccCCceeEhhHHHHHHHHHHC-----CCeEEEEEEeCCCHHHHHHHHHHhc--cCCCEEEECCCCCCCC
Confidence 57999999999999999999999999999999 9999999999999999999999886 5899999999999999
Q ss_pred CCCChHHHHHhhhhcCCCeeeeee-------cccccccc----hhhhcc---------c-cccc---ccceEEEeCCCCh
Q 005900 552 RDVTPEATKELIERETPGLLYVMM-------QESLKVTP----FAMLSR---------S-AAGI---RGSTLIINMPGNP 607 (671)
Q Consensus 552 ~D~T~eal~~~~~~~l~gi~e~~~-------~~~~~~~p----g~~lsr---------~-~~G~---~~~~~i~~LPG~P 607 (671)
||+|++++++++++++...++.+. ..+..+.+ ++.++. + ++|+ .+++.||.|||+|
T Consensus 74 dD~t~ea~a~~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~n~kqA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~lPGvP 153 (414)
T PRK00549 74 DDLTKETVAKFLGRELVLDEEALAKIEDYFAKRGREMTENNRKQALIPEGATVLPNPVGTAPGMIIEVDGKTYIVLPGPP 153 (414)
T ss_pred CccHHHHHHHHhCCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcCCCCCEECcCCCCcCCeEEEEECCEEEEEeCCCc
Confidence 999999999999998876554332 22333322 222221 1 3343 3678999999999
Q ss_pred hhHHHHHHH-HHHHHHH
Q 005900 608 NAVAECMEA-LLPALKH 623 (671)
Q Consensus 608 ~a~~~~~~~-ilp~L~~ 623 (671)
.+++.||+. ++|+|..
T Consensus 154 ~Em~~m~~~~v~p~l~~ 170 (414)
T PRK00549 154 SELKPMFEEYVVPYLSS 170 (414)
T ss_pred HHHHHHHHHHhHHHHHh
Confidence 999999988 6798764
No 46
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=99.79 E-value=2.3e-20 Score=204.47 Aligned_cols=135 Identities=27% Similarity=0.345 Sum_probs=115.5
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
.||+||+|||||+ .|+|+|+|+++|+++|+++|+++....+++||++.|.++|+++++ .+|+||||||+|+
T Consensus 1 m~v~Ii~tGdEll--------~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~-~~DlVIttGGlgp 71 (413)
T TIGR00200 1 LKAEIISVGDELL--------LGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASE-RADVLIFNGGLGP 71 (413)
T ss_pred CEEEEEEECcccc--------CCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc-CCCEEEEcCCCCC
Confidence 4799999999997 699999999999999999999999999999999999999999987 5999999999999
Q ss_pred CCccchhhhhccc-c--------------------------------------eEEEecccccCCCcceeeEeccccCch
Q 005900 271 GDKDFVKPLLQKK-G--------------------------------------TIYFNKVCMKPGKPLTFAEINIKPTDD 311 (671)
Q Consensus 271 G~~D~~~~~l~~~-g--------------------------------------~i~f~~v~~~PGkp~~~a~~~~~~~~~ 311 (671)
+++|+|++++++. | +++++.+.+.||. +...+
T Consensus 72 t~dD~t~eava~~~g~~l~~~~~~~~~i~~~~~~~g~~~~~~n~kqA~~p~ga~~l~N~~G~APG~---~~~~~------ 142 (413)
T TIGR00200 72 TSDDLTAETIATAKGEPLVLNEAWLKEIERYFHETGRVMAPNNRKQALLPAGAEFLANPVGTAPGM---FAVQL------ 142 (413)
T ss_pred CCcccHHHHHHHHhCCCcEECHHHHHHHHHHHHhcCCCCChHHHHhcCCCCCCEECCCCCCCCCee---EEEec------
Confidence 9999999998553 2 3444555555553 22221
Q ss_pred hhhhhhhhccCCCCceeEEEEEeEeeechhhcccC
Q 005900 312 VMVNKILAFGLPGNPVSCIVCFHLYIVPAIRHLSG 346 (671)
Q Consensus 312 ~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~~l~G 346 (671)
++++||+|||+|.++..+|+.++.|.|+++++
T Consensus 143 ---~~~~i~~LPG~P~e~~~m~~~~v~p~l~~~~~ 174 (413)
T TIGR00200 143 ---NRCLMLFTPGVPSEFRVMVEHEALPRLRERFS 174 (413)
T ss_pred ---CCEEEEEeCCCcHHHHHHHHHHhhHHHHHhcC
Confidence 14789999999999999999999999987654
No 47
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=99.76 E-value=1.1e-19 Score=179.33 Aligned_cols=131 Identities=20% Similarity=0.254 Sum_probs=104.3
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccce--eeeecccCCHHHHHHHhhhhhc-ccccEEEec
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKL--IDLGIVRDDEEELEKTLDNAFS-AGIDILLTS 265 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v--~~~~iv~Dd~~~i~~~l~~a~~-~~~DiVItt 265 (671)
.+++++||+++||+. .|+++|+|+++|.++|+++|++. ..+.++|||++.|+++|+++++ +++|+||||
T Consensus 2 ~~~~~aIItvSd~~~--------~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITT 73 (193)
T PRK09417 2 DTLKIGLVSISDRAS--------SGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTT 73 (193)
T ss_pred CCcEEEEEEEcCcCC--------CCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEEC
Confidence 468999999999976 68999999999999999997642 3458999999999999999985 359999999
Q ss_pred CCcccCCccchhhhhcccce-------EEEecccccCCCccee--eEeccccCchhhhhhhhhccCCCCceeEEEEEe
Q 005900 266 GGVSMGDKDFVKPLLQKKGT-------IYFNKVCMKPGKPLTF--AEINIKPTDDVMVNKILAFGLPGNPVSCIVCFH 334 (671)
Q Consensus 266 GG~s~G~~D~~~~~l~~~g~-------i~f~~v~~~PGkp~~~--a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~ 334 (671)
||+|+|++|+|+++++++++ ..|+...++.+...++ +..+ ..++++||+|||+|.++..+|+
T Consensus 74 GGtg~g~rDvTpeAv~~l~~keipG~~e~~r~~s~~~~~~a~LSRa~ag-------v~~~tlI~nLPGSp~a~~~~le 144 (193)
T PRK09417 74 GGTGPARRDVTPEATLAVADKEMPGFGEQMRQISLKFVPTAILSRQVAV-------IRGQSLIINLPGQPKSIKETLE 144 (193)
T ss_pred CCCCCCCCCcHHHHHHHHhCCcCCcHHHHHHHHhcccccHHHhhcceeE-------EeCCEEEEECCCCHHHHHHHHH
Confidence 99999999999999998651 3455555544332211 1111 1126899999999999999998
No 48
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=99.75 E-value=2.1e-19 Score=174.74 Aligned_cols=88 Identities=28% Similarity=0.496 Sum_probs=81.5
Q ss_pred eEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccC
Q 005900 192 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG 271 (671)
Q Consensus 192 rV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G 271 (671)
+|+||+|||||+ .|+++|+|+++|+++|+++|+++....+++||++.|+++|+++++ .+|+||||||+|++
T Consensus 1 ~v~Ii~~GdEl~--------~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~-~~dlVIttGG~G~t 71 (170)
T cd00885 1 TAEIIAIGDELL--------SGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE-RADLVITTGGLGPT 71 (170)
T ss_pred CEEEEEECcccc--------CCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-CCCEEEECCCCCCC
Confidence 589999999997 699999999999999999999999999999999999999999987 59999999999999
Q ss_pred Cccchhhhhcc-cc-eEEE
Q 005900 272 DKDFVKPLLQK-KG-TIYF 288 (671)
Q Consensus 272 ~~D~~~~~l~~-~g-~i~f 288 (671)
.+|+|++++++ +| ++.+
T Consensus 72 ~~D~t~ea~~~~~~~~l~~ 90 (170)
T cd00885 72 HDDLTREAVAKAFGRPLVL 90 (170)
T ss_pred CCChHHHHHHHHhCCCccc
Confidence 99999999998 44 4544
No 49
>PRK03673 hypothetical protein; Provisional
Probab=99.71 E-value=2e-18 Score=187.65 Aligned_cols=147 Identities=25% Similarity=0.305 Sum_probs=115.3
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
|||+||+|||||+ .|+|+|+|+++|+++|.++|+++.+..+++||++.|.++|++++++ +|+||||||+|+
T Consensus 2 ~~v~Iis~GdEll--------~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~-~DlVI~tGGlGp 72 (396)
T PRK03673 2 LRVEMLSTGDEVL--------HGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQH-ADVLIVNGGLGP 72 (396)
T ss_pred CEEEEEEecccCC--------CCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcc-CCEEEEcCCCCC
Confidence 7999999999998 6999999999999999999999999999999999999999999974 999999999999
Q ss_pred CCccchhhhhcc-cc-eEEEe-----------------------cccccCCCcceeeEeccccCch-hhhhhhhhccCCC
Q 005900 271 GDKDFVKPLLQK-KG-TIYFN-----------------------KVCMKPGKPLTFAEINIKPTDD-VMVNKILAFGLPG 324 (671)
Q Consensus 271 G~~D~~~~~l~~-~g-~i~f~-----------------------~v~~~PGkp~~~a~~~~~~~~~-~~~~~~~v~~LPG 324 (671)
|.+|+|++++++ +| ++.+| +.++-|-....+-.-.+.+.+- ...+++.+|.|||
T Consensus 73 t~dD~t~~avA~a~g~~L~~d~e~~~~i~~~f~~~~~~m~~~n~kQA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~LPG 152 (396)
T PRK03673 73 TSDDLSALAAATAAGEGLVLHEEWLAEMERFFAERGRVMAPSNRKQAELPASAEMIDNPVGTACGFALQLNRCLMFFTPG 152 (396)
T ss_pred CCcccHHHHHHHHcCCCceeCHHHHHHHHHHHHhcCCCCChhHHhhccCCCCCeeccCCCccCCcEEEEECCEEEEEECC
Confidence 999999999987 55 33321 1233333322221100111111 1223478999999
Q ss_pred CceeEEEEEeEeeechhhcccC
Q 005900 325 NPVSCIVCFHLYIVPAIRHLSG 346 (671)
Q Consensus 325 nP~aa~~~~~~~v~P~L~~l~G 346 (671)
.|..+..+|+..+.|.|++.+.
T Consensus 153 vP~Emk~M~~~~v~p~L~~~~~ 174 (396)
T PRK03673 153 VPSEFKVMVEQEILPRLRERFS 174 (396)
T ss_pred ChHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999988999987543
No 50
>PRK00549 competence damage-inducible protein A; Provisional
Probab=99.67 E-value=1.2e-17 Score=183.85 Aligned_cols=145 Identities=22% Similarity=0.324 Sum_probs=113.8
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
++++||+|||||+ .|+++|+|+++|+++|+++|+++....+++||++.|.++|+++.+ ++|+||||||+|+
T Consensus 1 m~~~ii~~G~Ell--------~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~-~~DlVItTGGlGp 71 (414)
T PRK00549 1 MKAEIIAVGTELL--------LGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEE-RSDLIITTGGLGP 71 (414)
T ss_pred CEEEEEEeccccc--------CCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhcc-CCCEEEECCCCCC
Confidence 4799999999987 699999999999999999999999999999999999999999886 5999999999999
Q ss_pred CCccchhhhhcc-cc-eEEEe--------------c---------ccccCCCcceeeEeccccCch-hhhhhhhhccCCC
Q 005900 271 GDKDFVKPLLQK-KG-TIYFN--------------K---------VCMKPGKPLTFAEINIKPTDD-VMVNKILAFGLPG 324 (671)
Q Consensus 271 G~~D~~~~~l~~-~g-~i~f~--------------~---------v~~~PGkp~~~a~~~~~~~~~-~~~~~~~v~~LPG 324 (671)
+.+|+|++++++ +| ++.++ + .++-|-....+-.-.+.+.+- ...+++.+|.|||
T Consensus 72 t~dD~t~ea~a~~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~n~kqA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~lPG 151 (414)
T PRK00549 72 TKDDLTKETVAKFLGRELVLDEEALAKIEDYFAKRGREMTENNRKQALIPEGATVLPNPVGTAPGMIIEVDGKTYIVLPG 151 (414)
T ss_pred CCCccHHHHHHHHhCCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcCCCCCEECcCCCCcCCeEEEEECCEEEEEeCC
Confidence 999999999988 56 44432 1 222232222221101111110 1113468999999
Q ss_pred CceeEEEEEeEeeechhhcc
Q 005900 325 NPVSCIVCFHLYIVPAIRHL 344 (671)
Q Consensus 325 nP~aa~~~~~~~v~P~L~~l 344 (671)
.|..+..+|+.++.|.|++.
T Consensus 152 vP~Em~~m~~~~v~p~l~~~ 171 (414)
T PRK00549 152 PPSELKPMFEEYVVPYLSSA 171 (414)
T ss_pred CcHHHHHHHHHHhHHHHHhh
Confidence 99999999999999999754
No 51
>PRK03670 competence damage-inducible protein A; Provisional
Probab=99.64 E-value=4.6e-17 Score=167.38 Aligned_cols=85 Identities=24% Similarity=0.339 Sum_probs=79.7
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
++++||+|||||+ .|+++|+|+++|+++|.++|+++....+++||.+.|.++|++++++.+|+||||||+|+
T Consensus 1 m~a~Ii~iGdEll--------~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGp 72 (252)
T PRK03670 1 MFAEIITVGDELL--------TGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGP 72 (252)
T ss_pred CEEEEEEeCCcCc--------CCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccC
Confidence 4789999999997 69999999999999999999999999999999999999999987644899999999999
Q ss_pred CCccchhhhhccc
Q 005900 271 GDKDFVKPLLQKK 283 (671)
Q Consensus 271 G~~D~~~~~l~~~ 283 (671)
+.+|+|++++++.
T Consensus 73 t~dD~T~eava~a 85 (252)
T PRK03670 73 THDDVTMLAVAEA 85 (252)
T ss_pred CCCCchHHHHHHH
Confidence 9999999999884
No 52
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=99.62 E-value=1.4e-16 Score=162.33 Aligned_cols=146 Identities=23% Similarity=0.318 Sum_probs=114.4
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
.+++||++||||. .|+|.|+|+.+|+..|.+.|+++....+|+||++.|.++|+.+.++ +|+||+|||.|+
T Consensus 2 ~~a~iI~vG~ElL--------~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGP 72 (255)
T COG1058 2 MKAEIIAVGDELL--------SGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGGLGP 72 (255)
T ss_pred ceEEEEEEcccee--------cCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCC
Confidence 4789999999998 6999999999999999999999999999999999999999999986 999999999999
Q ss_pred CCccchhhhhcc-cc-eEEE-----------------------ecccccCCCcceeeEeccccCch-hhhhhhhhccCCC
Q 005900 271 GDKDFVKPLLQK-KG-TIYF-----------------------NKVCMKPGKPLTFAEINIKPTDD-VMVNKILAFGLPG 324 (671)
Q Consensus 271 G~~D~~~~~l~~-~g-~i~f-----------------------~~v~~~PGkp~~~a~~~~~~~~~-~~~~~~~v~~LPG 324 (671)
+.+|+|.+++++ +| ++.. .+.++-|-....+-.--+.+.+- ...+++.++.|||
T Consensus 73 T~DDiT~e~vAka~g~~lv~~~~al~~i~~~~~~r~~~~~~~~~K~A~~P~Ga~~l~NpvG~APG~~v~~~~~~v~~lPG 152 (255)
T COG1058 73 THDDLTAEAVAKALGRPLVLDEEALAMIEEKYAKRGREMTEANRKQAMLPEGAEVLDNPVGTAPGFVVEGNGKNVYVLPG 152 (255)
T ss_pred CccHhHHHHHHHHhCCCcccCHHHHHHHHHHHHhcCCCCChhhhhhccCCCCCEeCCCCCCCCCeeEEecCCeEEEEeCC
Confidence 999999999987 55 3322 12333333222211100111111 1222578999999
Q ss_pred CceeEEEEEeEeeechhhccc
Q 005900 325 NPVSCIVCFHLYIVPAIRHLS 345 (671)
Q Consensus 325 nP~aa~~~~~~~v~P~L~~l~ 345 (671)
.|..+..+|+.++.|++....
T Consensus 153 vP~Em~~M~e~~~~~~l~~~~ 173 (255)
T COG1058 153 VPSEMKPMFENVLLPLLTGRF 173 (255)
T ss_pred CCHHHHHHHHHHHHHHhhccC
Confidence 999999999999999986543
No 53
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=99.56 E-value=6.3e-16 Score=147.55 Aligned_cols=142 Identities=23% Similarity=0.367 Sum_probs=114.2
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
+..+++|+++.|-.. .|.-.|..++.|.++|++.|.++..+.++|||.+.|++.+.+++.+.+|+|||||||
T Consensus 6 ~~~~~~VvTVSd~r~--------~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGT 77 (169)
T COG0521 6 KPLRIAVVTVSDRRS--------TGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGT 77 (169)
T ss_pred cceeEEEEEEecccc--------cCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCc
Confidence 346799999988643 344449999999999999999999999999999999999999887449999999999
Q ss_pred ccCCccchhhhhcccc-------eEEEecccccC-CCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEeeech
Q 005900 269 SMGDKDFVKPLLQKKG-------TIYFNKVCMKP-GKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPA 340 (671)
Q Consensus 269 s~G~~D~~~~~l~~~g-------~i~f~~v~~~P-Gkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~ 340 (671)
|++++|.|+++++.+- ..+|+.+...- |...++.+- ..+. .++++||+|||+|.|+..++..++.|.
T Consensus 78 G~t~RDvTpEA~~~~~dKeipGFgE~fR~~S~~~~g~~AiLSRa----~aGv-~~~tlIf~LPGSp~Avr~~l~~iI~p~ 152 (169)
T COG0521 78 GITPRDVTPEATRPLFDKEIPGFGELFRRLSLEEIGPTAILSRA----VAGV-RNGTLIFNLPGSPGAVRDALEGIILPE 152 (169)
T ss_pred cCCCCcCCHHHHHHHHhccCCcHHHHHHHhhhhcCCCcEEEeee----eeEE-eCCeEEEEcCCChhhHHHHHHHHHHHh
Confidence 9999999999998753 24678777777 544433221 1111 125999999999999999998788998
Q ss_pred hhc
Q 005900 341 IRH 343 (671)
Q Consensus 341 L~~ 343 (671)
|.+
T Consensus 153 l~~ 155 (169)
T COG0521 153 LDY 155 (169)
T ss_pred ccc
Confidence 863
No 54
>PF03454 MoeA_C: MoeA C-terminal region (domain IV); InterPro: IPR005111 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this domain is uncertain. The structure of this domain is known [] and forms an incomplete beta barrel.; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1T3E_A 2FU3_A 2FTS_A 1WU2_A 1XI8_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A 2NQM_B ....
Probab=99.17 E-value=6.8e-12 Score=104.51 Aligned_cols=72 Identities=35% Similarity=0.484 Sum_probs=61.0
Q ss_pred ccccccccccCCCChhhhhheeeeeccCCCCCccceecccccchhhhhccccccccccccccccceecccceEEEEEE
Q 005900 356 PARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSVISAGTLVSAIVI 433 (671)
Q Consensus 356 ~a~l~~~~~~~~~r~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~s~~l~sl~~an~li~iP~g~~~i~aG~~V~v~ll 433 (671)
+|+|.+++.++++|++|+|+++.. .+|. +++.|++.|+|+++++|++||||++||++.+.+++|+.|++++|
T Consensus 1 ka~l~~~~~~~~~r~~~~r~~l~~--~~g~----~~~~p~~~~~S~~l~sl~~an~l~~ip~~~~~~~~G~~V~v~ll 72 (72)
T PF03454_consen 1 KARLAEDIKKKPGRTEFLRVRLER--EDGE----YVVEPLGSQGSGMLSSLARANGLIVIPEGVEGLEAGEEVEVILL 72 (72)
T ss_dssp EEEESS-EE-BTTSEEEEEEEEET--TTSS----TEEEE-SSSSTSHTHHHHHBSEEEEEETT-SEE-TTEEEEEEE-
T ss_pred CcEeCCcccCCCCCeEEEEEEEEE--eCCE----EEEEECCCCCCHHHHhHhhCCEEEEeCCCCCccCCCCEEEEEEC
Confidence 478999999999999999999974 5665 88999999999999999999999999999999999999999986
No 55
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=94.64 E-value=0.0055 Score=63.42 Aligned_cols=85 Identities=25% Similarity=0.390 Sum_probs=75.4
Q ss_pred EEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCC
Q 005900 473 SVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR 552 (671)
Q Consensus 473 ~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~ 552 (671)
.-+++.++..+..|.+.|+|..+....+... |.++...-++.||..+|.+...++. .+.+.|+++||++++++
T Consensus 6 ~s~~~li~~~~~~~~~~~t~~sf~~~~~~~~-----~~~~~s~~~~~~d~~q~~~~~~~l~--~~~e~i~~a~~i~~~~~ 78 (282)
T KOG2644|consen 6 NSAIFLINRFLANGSTEDTNSSFKGLHLSTS-----GVQLKSINIVDDDAAQILDEVLRLT--RQLEFILKAGGIGPTHD 78 (282)
T ss_pred chHHHHHHhhhcccceeeeeeeccccccccc-----cccceeeecccchHHHHHHHHHHHH--HHHHHHHHhhccCCccc
Confidence 4456678888889999999999999999988 9999999999999999888888876 35999999999999999
Q ss_pred CCChHHHHHhhh
Q 005900 553 DVTPEATKELIE 564 (671)
Q Consensus 553 D~T~eal~~~~~ 564 (671)
|+|.|.++..++
T Consensus 79 ~i~~E~~a~SFn 90 (282)
T KOG2644|consen 79 DITQEEMALSFN 90 (282)
T ss_pred hhhHHHHHHhhC
Confidence 999999998874
No 56
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=82.72 E-value=2.3 Score=39.74 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=48.8
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
|+|||-+-..|..+-+ .-.-++..+|+..|++|++.+.-- .++.+.++. .++++|+|..|+=.
T Consensus 1 ~~~~v~~a~~g~D~Hd-------------~g~~iv~~~l~~~GfeVi~lg~~~-s~e~~v~aa---~e~~adii~iSsl~ 63 (132)
T TIGR00640 1 RRPRILVAKMGQDGHD-------------RGAKVIATAYADLGFDVDVGPLFQ-TPEEIARQA---VEADVHVVGVSSLA 63 (132)
T ss_pred CCCEEEEEeeCCCccH-------------HHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHH---HHcCCCEEEEcCch
Confidence 5788888777764443 334589999999999999999753 344333333 33479999998843
Q ss_pred ccCCccchhhhhcc
Q 005900 269 SMGDKDFVKPLLQK 282 (671)
Q Consensus 269 s~G~~D~~~~~l~~ 282 (671)
+. -.++++++++.
T Consensus 64 ~~-~~~~~~~~~~~ 76 (132)
T TIGR00640 64 GG-HLTLVPALRKE 76 (132)
T ss_pred hh-hHHHHHHHHHH
Confidence 21 22334444444
No 57
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=79.27 E-value=3.2 Score=39.32 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=51.8
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
+||||.|...|- +-+ |.-.-.+..+|+..|++|+..+...- ++ ++++.|+++++|+|..|+=.
T Consensus 11 ~rprvlvak~Gl---DgH----------d~gakvia~~l~d~GfeVi~~g~~~t-p~---e~v~aA~~~dv~vIgvSsl~ 73 (143)
T COG2185 11 ARPRVLVAKLGL---DGH----------DRGAKVIARALADAGFEVINLGLFQT-PE---EAVRAAVEEDVDVIGVSSLD 73 (143)
T ss_pred CCceEEEeccCc---ccc----------ccchHHHHHHHHhCCceEEecCCcCC-HH---HHHHHHHhcCCCEEEEEecc
Confidence 799999999982 222 22346889999999999999988653 33 33444444579999998744
Q ss_pred ccCCccchhhhhcc
Q 005900 269 SMGDKDFVKPLLQK 282 (671)
Q Consensus 269 s~G~~D~~~~~l~~ 282 (671)
-+-.++++.+++.
T Consensus 74 -g~h~~l~~~lve~ 86 (143)
T COG2185 74 -GGHLTLVPGLVEA 86 (143)
T ss_pred -chHHHHHHHHHHH
Confidence 3445555655544
No 58
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=78.81 E-value=2.9 Score=38.58 Aligned_cols=63 Identities=25% Similarity=0.318 Sum_probs=49.1
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQ 281 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~ 281 (671)
.||-++-+.+++++.|.++.... ..|...++.+|+.+.+.+++-|++.|++| |+.|++-.-+.
T Consensus 44 fDSi~~~~~~~~~~~~~~~~~~p--~kD~TD~e~Al~~~~~~~~~~i~v~Ga~G-gR~DH~lanl~ 106 (123)
T PF04263_consen 44 FDSISPEVLEFYKSKGVEIIHFP--EKDYTDLEKALEYAIEQGPDEIIVLGALG-GRFDHTLANLN 106 (123)
T ss_dssp SSSS-HHHHHHHHHCTTEEEEE---STTS-HHHHHHHHHHHTTTSEEEEES-SS-SSHHHHHHHHH
T ss_pred CCCCChHHHHHHHhhccceeccc--ccccCHHHHHHHHHHHCCCCEEEEEecCC-CcHHHHHHHHH
Confidence 68889999999999999988776 44567788899888777789999999998 79999866554
No 59
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=71.50 E-value=9.2 Score=38.35 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=44.0
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccC-CHHHHHHHhhhhhcccccEEEecCC
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~D-d~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
..++|++|+|...- ++.......+.++++|+++..+..+.+ +.+.+.+.|. ++|+|+.+||
T Consensus 28 ~~~~i~~iptA~~~-------------~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~-----~ad~I~~~GG 89 (210)
T cd03129 28 AGARVLFIPTASGD-------------RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLL-----EADGIFVGGG 89 (210)
T ss_pred CCCeEEEEeCCCCC-------------hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHh-----hCCEEEEcCC
Confidence 57999999997632 334556788889999999887776642 2233334333 4899999997
Q ss_pred cc
Q 005900 268 VS 269 (671)
Q Consensus 268 ~s 269 (671)
--
T Consensus 90 ~~ 91 (210)
T cd03129 90 NQ 91 (210)
T ss_pred cH
Confidence 53
No 60
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=71.37 E-value=6.2 Score=41.02 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=37.4
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
+.|||++|+|.+. ++. .........++++|++.+..-.+.+-.++-...+.+.+. ++|.|..+||-
T Consensus 27 ~~~rI~~iptAS~--~~~-----------~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~-~ad~I~~~GGn 92 (250)
T TIGR02069 27 EDAIIVIITSASE--EPR-----------EVGERYITIFSRLGVKEVKILDVREREDASDENAIALLS-NATGIFFTGGD 92 (250)
T ss_pred CCceEEEEeCCCC--ChH-----------HHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHh-hCCEEEEeCCC
Confidence 3589999999764 111 123345667788999643333333211111122223344 48999999984
No 61
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=68.56 E-value=11 Score=39.26 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005900 223 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 223 L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
+.+.-++.|+++....-.+ +.+...+.|+++.++++|+||++|.
T Consensus 23 ~~~~~~~~gv~~~~~e~~~-~~~~~~~~i~~~~~~g~dlIi~~g~ 66 (258)
T cd06353 23 RKAAEKALGVEVTYVENVP-EGADAERVLRELAAQGYDLIFGTSF 66 (258)
T ss_pred HHHHHHhcCCeEEEEecCC-chHhHHHHHHHHHHcCCCEEEECch
Confidence 3444456788887776665 5788889999988778999999774
No 62
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=67.17 E-value=10 Score=35.57 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=50.5
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeec-ccCCHHHHHHHhhhhhcccccEEEecCC
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGI-VRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~i-v~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
++++|.+.+.+.|.-+.| -.++..+|++.|+++++++. +| ++.+.++..+ .++|+|.+|--
T Consensus 2 ~~~~vl~~~~~gD~H~lG-------------~~iv~~~lr~~G~eVi~LG~~vp--~e~i~~~a~~---~~~d~V~lS~~ 63 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVG-------------NKILDRALTEAGFEVINLGVMTS--QEEFIDAAIE---TDADAILVSSL 63 (137)
T ss_pred CCCEEEEEeCCCChhHHH-------------HHHHHHHHHHCCCEEEECCCCCC--HHHHHHHHHH---cCCCEEEEcCc
Confidence 678888888887766443 45888999999999999996 33 4555555544 35899998765
Q ss_pred cccCCccchhhhhcc
Q 005900 268 VSMGDKDFVKPLLQK 282 (671)
Q Consensus 268 ~s~G~~D~~~~~l~~ 282 (671)
.+.. ...+++.++.
T Consensus 64 ~~~~-~~~~~~~~~~ 77 (137)
T PRK02261 64 YGHG-EIDCRGLREK 77 (137)
T ss_pred cccC-HHHHHHHHHH
Confidence 5432 2233444443
No 63
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=66.80 E-value=15 Score=37.24 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=47.6
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
+++|+.|+|-+-..+ .|--.......|+..|+++..+.+..++.++|++.|.+ +|+|...||-
T Consensus 32 ~~~i~FIPtAs~~~~-----------~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~-----~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFIPTASVDSE-----------DDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMK-----ADIIYVGGGN 94 (224)
T ss_pred CceEEEEecCccccc-----------hHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhh-----ccEEEECCch
Confidence 678999998542211 11122345677889999999999999999999998873 7999999984
No 64
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=65.89 E-value=14 Score=34.74 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=36.0
Q ss_pred cccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005900 213 GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 213 G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
|.+.|..-..+..+|+..|++|+++++--- ++.+.++.. ++++|+|-.|.=++
T Consensus 11 ~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~-~e~~v~aa~---~~~adiVglS~l~~ 63 (134)
T TIGR01501 11 SDCHAVGNKILDHAFTNAGFNVVNLGVLSP-QEEFIKAAI---ETKADAILVSSLYG 63 (134)
T ss_pred CChhhHhHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHHH---HcCCCEEEEecccc
Confidence 344455567889999999999999997432 344333333 34689998887443
No 65
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=64.84 E-value=11 Score=41.09 Aligned_cols=120 Identities=9% Similarity=0.113 Sum_probs=65.0
Q ss_pred CCCCCceEEEecCCccccCCceEEEeccccCCh-hhHHHHHhhhcCC-ccceEEEeecCCCCCCCCC--------ChHHH
Q 005900 490 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDV-GKIKEVLRRWSDI-DKMDLILTLGGTGFTPRDV--------TPEAT 559 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~-~~I~~~l~~~~~~-~~~DlVIttGGtG~~~~D~--------T~eal 559 (671)
|+..+.+.++|.+. +++.+..++-+.. ++..+.++++++. .+.|+++.-|++....+.+ ..|.+
T Consensus 70 ~s~~P~~~~~ll~~------isl~yhptlmaa~G~~ae~~l~~~~~~~~g~~ILvVEGaIp~~~~G~y~~~~g~~~~e~l 143 (365)
T TIGR00391 70 RSAHPTVENLILET------ISLEYHETLMAAFGHQAEENKHDAIEKYKGQYILVVEGSIPLGDNGIYCMVAGEPIVEHI 143 (365)
T ss_pred ccCCCCHHHHHhcC------ceEEechHhHHhhHHHHHHHHHHHHhccCCCeEEEEeCCCCCCCCceeeeeCCcHHHHHH
Confidence 44556666666554 5778877777643 2333444444321 3589999999996544311 34444
Q ss_pred HHhhhhcCCCeeeeeecc-------cc-cccchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHH
Q 005900 560 KELIERETPGLLYVMMQE-------SL-KVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPA 620 (671)
Q Consensus 560 ~~~~~~~l~gi~e~~~~~-------~~-~~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~ 620 (671)
.++..+. .++... |+ ...|+..-..+...++.+++|+++||.|-.-...+..|+-+
T Consensus 144 ~~~a~~A-----~aVIAvGtCAs~GGI~aa~pnptga~~v~~vi~~~pvinIPGCPp~Pe~i~~tl~~~ 207 (365)
T TIGR00391 144 RKAAEGA-----AAIIAIGTCSSWGGVQAAGPNPTGAVPLQKVIPDKPVINVPGCPPNPHNFLATVAYI 207 (365)
T ss_pred HHHhhcC-----CEEEEEeccccccCccCCCCCCCCCcchhHhcCCCCeEEeCCCCCCHHHHHHHHHHH
Confidence 4444321 112211 11 12222110011222345788999999999888777776543
No 66
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=63.43 E-value=3.2 Score=41.58 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=32.5
Q ss_pred cceeccccccccceEEeccCcccccchhhhhhhccee
Q 005900 147 VDIRPVGYDIEKDAIILKSGERIGASEIGLLATAGIM 183 (671)
Q Consensus 147 ~nir~~Ged~~~G~~ll~~G~~l~p~~i~lLas~Gi~ 183 (671)
++|.+.=-.+++|++|+++|+++++.++-.|-++|..
T Consensus 184 ~~V~pv~~~V~~Ge~IV~kGe~VT~e~~~~L~~l~~~ 220 (222)
T PF07697_consen 184 ASVSPVRGMVKKGEVIVRKGEIVTEEQYEKLESLGLL 220 (222)
T ss_pred hcCCchHhhccCCCEEecCCcEeCHHHHHHHHHcCCc
Confidence 4566776789999999999999999999999999864
No 67
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=62.55 E-value=14 Score=34.52 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005900 213 GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 213 G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
|.+.|-.--+++.+|+..|++|+++++--- ++.+.++. .++++|+|-.|.=
T Consensus 9 gD~HdiGkniv~~~L~~~GfeVidLG~~v~-~e~~v~aa---~~~~adiVglS~L 59 (128)
T cd02072 9 SDCHAVGNKILDHAFTEAGFNVVNLGVLSP-QEEFIDAA---IETDADAILVSSL 59 (128)
T ss_pred CchhHHHHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHH---HHcCCCEEEEecc
Confidence 455566667899999999999999998433 33333333 2336899988873
No 68
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=60.93 E-value=18 Score=40.80 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=62.6
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEe---cCC
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLT---SGG 267 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIt---tGG 267 (671)
++|++++++..++-+. .........-.+.+.|++.|++++....+--+.++++++.+.+..+++|.||+ |+|
T Consensus 1 ~~ig~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~ 75 (452)
T cd00578 1 PKIGFVTGSQHLYGEE-----LLEQVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFG 75 (452)
T ss_pred CEEEEEEecccccChh-----HHHHHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccc
Confidence 5899999999873222 12223344566777788889999998866547888888888776657998886 555
Q ss_pred cccCCccchhhhhcccc-eEEEecccc
Q 005900 268 VSMGDKDFVKPLLQKKG-TIYFNKVCM 293 (671)
Q Consensus 268 ~s~G~~D~~~~~l~~~g-~i~f~~v~~ 293 (671)
.+ .++..+++.+. .++++...-
T Consensus 76 ~~----~~~~~~~~~~~~Pvll~a~~~ 98 (452)
T cd00578 76 PA----KMWIAGLSELRKPVLLLATQF 98 (452)
T ss_pred cH----HHHHHHHHhcCCCEEEEeCCC
Confidence 54 35555555554 455555443
No 69
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=60.46 E-value=18 Score=32.50 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=36.0
Q ss_pred ccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 214 QIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 214 ~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
...+---.+++.+|++.|+++++++. .-.++.+.+++.+ .++|+|..|.-.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~-~~~~~~l~~~~~~---~~pdvV~iS~~~ 60 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGV-DVPPEEIVEAAKE---EDADAIGLSGLL 60 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHH---cCCCEEEEeccc
Confidence 33344457999999999999999883 2345566666654 358999998753
No 70
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=59.55 E-value=12 Score=37.66 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=40.3
Q ss_pred eecceEEEeecCCcccccccccccccccccchhHHHHHHHHHh-ccceeeeecccCCHHHHHHHhhhhhcccccEEEecC
Q 005900 188 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQ-HCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 188 ~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~-G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
-+++||++|+|.... ++.......+.++++ |+++..+.... .+.+.+.+. ++|+|+.+|
T Consensus 29 ~~~~~i~~IptAs~~-------------~~~~~~~~~~a~~~l~G~~~~~~~~~~------~~~~~~~l~-~ad~I~l~G 88 (212)
T cd03146 29 KARPKVLFVPTASGD-------------RDEYTARFYAAFESLRGVEVSHLHLFD------TEDPLDALL-EADVIYVGG 88 (212)
T ss_pred cCCCeEEEECCCCCC-------------HHHHHHHHHHHHhhccCcEEEEEeccC------cccHHHHHh-cCCEEEECC
Confidence 467899999998762 122344567888889 99887665544 122222333 489999999
Q ss_pred C
Q 005900 267 G 267 (671)
Q Consensus 267 G 267 (671)
|
T Consensus 89 G 89 (212)
T cd03146 89 G 89 (212)
T ss_pred c
Confidence 7
No 71
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=58.45 E-value=12 Score=35.48 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=29.0
Q ss_pred HHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 223 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 223 L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
..+.++++|+++..+.+...+.+.+.+.|+ ++|+|..+||-
T Consensus 5 ~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~-----~ad~I~~~GG~ 45 (154)
T PF03575_consen 5 FRKAFRKLGFEVDQLDLSDRNDADILEAIR-----EADAIFLGGGD 45 (154)
T ss_dssp HHHHHHHCT-EEEECCCTSCGHHHHHHHHH-----HSSEEEE--S-
T ss_pred HHHHHHHCCCEEEEEeccCCChHHHHHHHH-----hCCEEEECCCC
Confidence 457788999999888888877776666555 38999999974
No 72
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=57.76 E-value=16 Score=37.10 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=39.3
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
+.+||++|+|...- .+.........++++|++.+....+.+..+.-...+.+.+. ++|+|+.+||-
T Consensus 28 ~~~~i~~iptA~~~-------------~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~-~ad~I~~~GG~ 93 (217)
T cd03145 28 AGARIVVIPAASEE-------------PAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLR-DADGIFFTGGD 93 (217)
T ss_pred CCCcEEEEeCCCcC-------------hhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHH-hCCEEEEeCCc
Confidence 56899999997632 12334567777888898755554444211111122223343 48999999974
No 73
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=57.40 E-value=18 Score=38.57 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=47.3
Q ss_pred ceEEEeecCCcccccccccccccccccchhHHHHHHHHHh-ccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQ-HCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~-G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
.+|+|+..|.- ...--.++.---+..+-+++ |+++....-.+++.+...+.++++.++++|+||++|..
T Consensus 2 ~~v~~~~~g~~---------~D~g~n~~~~~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~- 71 (306)
T PF02608_consen 2 KKVALLDPGGI---------NDKGFNQSAYEGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFE- 71 (306)
T ss_dssp EEEEEESSS-C---------CCSSHHHHHHHHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGG-
T ss_pred eEEEEEECCCC---------CCccHHHHHHHHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHH-
Confidence 36777777641 11111222223445555677 89988888877556777888888877789999998843
Q ss_pred cCCccchhhhhccc
Q 005900 270 MGDKDFVKPLLQKK 283 (671)
Q Consensus 270 ~G~~D~~~~~l~~~ 283 (671)
-.|.+.++.++.
T Consensus 72 --~~~~~~~vA~~y 83 (306)
T PF02608_consen 72 --YSDALQEVAKEY 83 (306)
T ss_dssp --GHHHHHHHHTC-
T ss_pred --HHHHHHHHHHHC
Confidence 224444444443
No 74
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=57.08 E-value=18 Score=35.08 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHhccceeeeecccCCHHHHHHH--------hhhhhcccccEEEe-cCCccc
Q 005900 219 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKT--------LDNAFSAGIDILLT-SGGVSM 270 (671)
Q Consensus 219 N~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~--------l~~a~~~~~DiVIt-tGG~s~ 270 (671)
-+.-++..|+.+|+.|+-..+ |-..+++.. +++++. .+|++|| ||..++
T Consensus 34 vG~g~A~~lr~~Ga~V~V~e~--DPi~alqA~~dGf~v~~~~~a~~-~adi~vtaTG~~~v 91 (162)
T PF00670_consen 34 VGKGIARALRGLGARVTVTEI--DPIRALQAAMDGFEVMTLEEALR-DADIFVTATGNKDV 91 (162)
T ss_dssp HHHHHHHHHHHTT-EEEEE-S--SHHHHHHHHHTT-EEE-HHHHTT-T-SEEEE-SSSSSS
T ss_pred ccHHHHHHHhhCCCEEEEEEC--ChHHHHHhhhcCcEecCHHHHHh-hCCEEEECCCCccc
Confidence 366789999999999876655 224445544 456676 5999997 676554
No 75
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=53.13 E-value=23 Score=35.00 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=33.3
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc-ccCC
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV-SMGD 272 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~-s~G~ 272 (671)
+||-++.+..+|++.|+++.....-.++.+.+ .+ + +.|.||.+||- ++.+
T Consensus 8 ~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~----~~-~--~~d~iilsgGpg~p~~ 58 (188)
T TIGR00566 8 YDSFTYNLVQYFCELGAEVVVKRNDSLTLQEI----EA-L--LPLLIVISPGPCTPNE 58 (188)
T ss_pred CcCHHHHHHHHHHHcCCceEEEECCCCCHHHH----Hh-c--CCCEEEEcCCCCChhh
Confidence 78999999999999998875332222223333 22 2 37888889987 4443
No 76
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=52.77 E-value=57 Score=31.50 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=48.7
Q ss_pred EEEEEeecccccCCCCCCCCC----ceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCC
Q 005900 474 VAILTVSDTVASGAGPDRSGP----RAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 549 (671)
Q Consensus 474 v~IIt~GdEl~~G~~~D~n~~----~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~ 549 (671)
+-|+.+||.+..|.-.+.... .+++.|.+... .++++...++-.+.-..+.+.+..... .+.|+|+...|+=-
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~--~~~~~~n~g~~G~t~~~~~~~l~~~~~-~~pd~Vii~~G~ND 79 (191)
T cd01836 3 LRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITG--RGVRWRLFAKTGATSADLLRQLAPLPE-TRFDVAVISIGVND 79 (191)
T ss_pred eEEEEEeccccccccccchhccHHHHHHHHHHHhhC--CceEEEEEecCCcCHHHHHHHHHhccc-CCCCEEEEEecccC
Confidence 457888999998854332221 23333332210 157888888888888888888887443 68999999888754
Q ss_pred C
Q 005900 550 T 550 (671)
Q Consensus 550 ~ 550 (671)
.
T Consensus 80 ~ 80 (191)
T cd01836 80 V 80 (191)
T ss_pred c
Confidence 3
No 77
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=52.10 E-value=31 Score=35.64 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=61.2
Q ss_pred hhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeee---------cccCC
Q 005900 173 EIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLG---------IVRDD 243 (671)
Q Consensus 173 ~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~---------iv~Dd 243 (671)
-+..|..+|+++|.+. +-- +.+ -...+.+++++.|++|.... +..=+
T Consensus 111 ~~~AL~alg~~RIalv--------TPY---------------~~~-v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~ 166 (239)
T TIGR02990 111 AVDGLAALGVRRISLL--------TPY---------------TPE-TSRPMAQYFAVRGFEIVNFTCLGLTDDREMARIS 166 (239)
T ss_pred HHHHHHHcCCCEEEEE--------CCC---------------cHH-HHHHHHHHHHhCCcEEeeeeccCCCCCceeeecC
Confidence 3556777887766653 322 112 24578889999999997763 33345
Q ss_pred HHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcccc
Q 005900 244 EEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 284 (671)
Q Consensus 244 ~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g 284 (671)
++.|.++++++...++|.|+++ +|....-|++.++=+++|
T Consensus 167 p~~i~~~~~~~~~~~aDAifis-CTnLrt~~vi~~lE~~lG 206 (239)
T TIGR02990 167 PDCIVEAALAAFDPDADALFLS-CTALRAATCAQRIEQAIG 206 (239)
T ss_pred HHHHHHHHHHhcCCCCCEEEEe-CCCchhHHHHHHHHHHHC
Confidence 7888888887755579999999 788888888777666676
No 78
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.83 E-value=34 Score=33.07 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=47.8
Q ss_pred ceEEEeecCCcccccccccccccccc--cchhHHHHHHHHHh---ccceeeeecccCCHHHHHHHhhhhhcccccEEEec
Q 005900 191 PTIAVLSTGDELVEPTTQCLDRGQIR--DSNRAMLLAAAMQQ---HCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTS 265 (671)
Q Consensus 191 prV~iistGdElv~~~~~~~~~G~i~--dsN~~~L~a~l~~~---G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVItt 265 (671)
|.+-|+..||-|..-. |--. .+=...+...|.+. ++++...++-.+....+.+.+.+......|+|+..
T Consensus 1 ~~~~i~~~GDSit~G~------g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~~~~~pd~Vii~ 74 (191)
T cd01836 1 PPLRLLVLGDSTAAGV------GVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPLPETRFDVAVIS 74 (191)
T ss_pred CCeEEEEEeccccccc------cccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhcccCCCCEEEEE
Confidence 3455777799887321 1111 11122366666653 57888999999999888888887544468999988
Q ss_pred CCc
Q 005900 266 GGV 268 (671)
Q Consensus 266 GG~ 268 (671)
.|+
T Consensus 75 ~G~ 77 (191)
T cd01836 75 IGV 77 (191)
T ss_pred ecc
Confidence 876
No 79
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=51.80 E-value=27 Score=31.85 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=33.7
Q ss_pred cchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 217 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 217 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
|---.++..+|+..|+++++.+.-- ..+.+.+++.+ .++|+|.+|+-.
T Consensus 13 ~lG~~~~~~~l~~~G~~vi~lG~~v-p~e~~~~~a~~---~~~d~V~iS~~~ 60 (122)
T cd02071 13 DRGAKVIARALRDAGFEVIYTGLRQ-TPEEIVEAAIQ---EDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCC-CHHHHHHHHHH---cCCCEEEEcccc
Confidence 3335688899999999999999642 23444444443 359999998754
No 80
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=51.57 E-value=24 Score=36.35 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=39.2
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
+.|||++|+|-...-+ ++.-.....+.++++|+++..+... +| .. +.+. ++|+|+.+||-
T Consensus 30 ~~~~v~fIPtAs~~~~-----------~~~y~~~~~~af~~lG~~v~~l~~~-~d---~~----~~l~-~ad~I~v~GGn 89 (233)
T PRK05282 30 GRRKAVFIPYAGVTQS-----------WDDYTAKVAEALAPLGIEVTGIHRV-AD---PV----AAIE-NAEAIFVGGGN 89 (233)
T ss_pred CCCeEEEECCCCCCCC-----------HHHHHHHHHHHHHHCCCEEEEeccc-hh---hH----HHHh-cCCEEEECCcc
Confidence 6799999999653211 1111124667788899997766443 22 22 3344 48999999996
Q ss_pred cc
Q 005900 269 SM 270 (671)
Q Consensus 269 s~ 270 (671)
+.
T Consensus 90 t~ 91 (233)
T PRK05282 90 TF 91 (233)
T ss_pred HH
Confidence 54
No 81
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=50.57 E-value=22 Score=34.03 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=37.9
Q ss_pred HHHHHHHHhccceeeeecc----cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQQHCKLIDLGIV----RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv----~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.+...|++.|+++.+++.. ++|...+...+.++.. ..+|+.|+..|||+|.
T Consensus 17 ~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~ 72 (151)
T COG0698 17 IIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIGM 72 (151)
T ss_pred HHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChhH
Confidence 5677888899999998765 3455566666655543 2489999999999985
No 82
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=50.52 E-value=19 Score=39.44 Aligned_cols=119 Identities=10% Similarity=0.123 Sum_probs=63.2
Q ss_pred CCCceEEEecCCccccCCceEEEeccccCC-hhhHHHHHhhhcCC-ccceEEEeecCCCCCCC--------CCChHHHHH
Q 005900 492 SGPRAVSVVNSSSEKLGGAKVVATDVVPDD-VGKIKEVLRRWSDI-DKMDLILTLGGTGFTPR--------DVTPEATKE 561 (671)
Q Consensus 492 n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd-~~~I~~~l~~~~~~-~~~DlVIttGGtG~~~~--------D~T~eal~~ 561 (671)
..+.+.++|.+. +++.+...+... -++..+.|+++++. .+.|+++..|.+++... .-..|.+.+
T Consensus 70 ~~P~~~~ll~~~------i~l~yH~tl~aa~G~~a~~~l~~~~~~~~~~~ILvVEGaIp~~~~G~y~~~gg~~~~e~l~~ 143 (371)
T PRK10468 70 THPTVENLVLET------ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRK 143 (371)
T ss_pred CCCCHHHHHhcC------ceeeeccHHHHHhHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCcceeeECCchHHHHHHH
Confidence 334444455443 456666666532 23444445554431 35899999999966432 223455555
Q ss_pred hhhhcCCCeeeeeecc-------ccc-ccchhhhcccccccccceEEEeCCCChhhHHHHHHHHHHHH
Q 005900 562 LIERETPGLLYVMMQE-------SLK-VTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 562 ~~~~~l~gi~e~~~~~-------~~~-~~pg~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
+..+. .++... |+. ..|+-.-+.+..+++.+++|+++||.|-.=...+..++-++
T Consensus 144 ~a~~A-----~aVVAvGtCAs~GGI~aa~pnptga~gv~~~l~~~PVINIPGCPp~P~~i~~tL~~l~ 206 (371)
T PRK10468 144 AAEGA-----AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 (371)
T ss_pred HhccC-----CEEEEEecccccCCcccCCCCCCCCccHHHhcCCCCeEEcCCCCCCHHHHHHHHHHHH
Confidence 54432 112111 111 22221101122344667899999999998877777765444
No 83
>PRK05670 anthranilate synthase component II; Provisional
Probab=49.67 E-value=25 Score=34.59 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=32.1
Q ss_pred cchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc-ccCC
Q 005900 217 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV-SMGD 272 (671)
Q Consensus 217 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~-s~G~ 272 (671)
|+-...+..+|++.|+++..+..-..+.+.+ + .+ +.|.||.+||- ++.+
T Consensus 9 d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~----~-~~--~~dglIlsgGpg~~~d 58 (189)
T PRK05670 9 DSFTYNLVQYLGELGAEVVVYRNDEITLEEI----E-AL--NPDAIVLSPGPGTPAE 58 (189)
T ss_pred CchHHHHHHHHHHCCCcEEEEECCCCCHHHH----H-hC--CCCEEEEcCCCCChHH
Confidence 6667889999999999876554432233333 2 22 27889999886 4433
No 84
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=48.37 E-value=37 Score=33.86 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=50.6
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
.++||.+.+.+.|.-+.| -.++..+|++.|+++++++. .=.++.+.+++.+- ++|+|-.|.-+
T Consensus 81 ~~~~vl~~~~~gd~H~lG-------------~~~v~~~l~~~G~~vi~lG~-~~p~~~l~~~~~~~---~~d~v~lS~~~ 143 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIG-------------KNLVATMLEANGFEVIDLGR-DVPPEEFVEAVKEH---KPDILGLSALM 143 (201)
T ss_pred CCCeEEEEecCCccchHH-------------HHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHc---CCCEEEEeccc
Confidence 367887777766665444 45889999999999999983 22356677777653 58999888754
Q ss_pred ccCCccchhhhhcc
Q 005900 269 SMGDKDFVKPLLQK 282 (671)
Q Consensus 269 s~G~~D~~~~~l~~ 282 (671)
... .+.+++.++.
T Consensus 144 ~~~-~~~~~~~i~~ 156 (201)
T cd02070 144 TTT-MGGMKEVIEA 156 (201)
T ss_pred ccc-HHHHHHHHHH
Confidence 433 2334444443
No 85
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=47.31 E-value=34 Score=38.00 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=39.0
Q ss_pred HHHHHHHHhccceeeeecccCCH--HHHHHHhhhhhcccccEEEecCCcccCCccchhh
Q 005900 222 MLLAAAMQQHCKLIDLGIVRDDE--EELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKP 278 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~Dd~--~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~ 278 (671)
.+...|++.|.++..+.-+..|+ +.+.+.++.+.+.++|+||--||=|+ -|..+-
T Consensus 68 ~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~--iD~AKa 124 (395)
T PRK15454 68 GLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV--LDAAKA 124 (395)
T ss_pred HHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH--HHHHHH
Confidence 46777888898877665444444 66778887777768999998888665 355443
No 86
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=46.44 E-value=29 Score=32.98 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=36.7
Q ss_pred HHHHHHHHhccceeeeecc---cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQQHCKLIDLGIV---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv---~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.++|++.|++|.+++.- +.|...+...+.+++. ..+|.-|..-|+|+|-
T Consensus 15 ~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~ 69 (144)
T TIGR00689 15 EIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGM 69 (144)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH
Confidence 5677888899999999872 3455566666666552 2478888888888763
No 87
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=46.32 E-value=23 Score=34.55 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=34.2
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
+|++..+|...+++.|.++.....-. +.+.+.+ . ++ ++|.||.+||.+-
T Consensus 6 ~~~~~~~l~~~l~~~~~~~~v~~~~~-~~~~~~~---~-~~-~~d~iii~Gg~~~ 54 (192)
T PF00117_consen 6 GDSFTHSLVRALRELGIDVEVVRVDS-DFEEPLE---D-LD-DYDGIIISGGPGS 54 (192)
T ss_dssp SHTTHHHHHHHHHHTTEEEEEEETTG-GHHHHHH---H-TT-TSSEEEEECESSS
T ss_pred CHHHHHHHHHHHHHCCCeEEEEECCC-chhhhhh---h-hc-CCCEEEECCcCCc
Confidence 67899999999999997765544433 3333322 2 33 5999999999655
No 88
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=44.39 E-value=34 Score=33.74 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=31.6
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
+|+-++.|..+|++.|.++..+..-..+++ . ++ .+|.||.+||.+.
T Consensus 10 ~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~-------~-l~-~~d~iIi~gGp~~ 55 (190)
T PRK06895 10 HDSFTFNLVDLIRKLGVPMQVVNVEDLDLD-------E-VE-NFSHILISPGPDV 55 (190)
T ss_pred CCchHHHHHHHHHHcCCcEEEEECCccChh-------H-hc-cCCEEEECCCCCC
Confidence 567778899999999987765433221222 1 23 3899999999863
No 89
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=44.27 E-value=36 Score=32.31 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHHHHHhccceeeeecccCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.++|++.|++|++++.-+.|...+...+.+++. ..+|.=|..-|+|+|-
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~ 68 (141)
T PRK12613 17 LIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGP 68 (141)
T ss_pred HHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhH
Confidence 56788889999999999755666777777776652 2477767667777663
No 90
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=43.82 E-value=29 Score=32.83 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=36.5
Q ss_pred HHHHHHHHHhccceeeeeccc---CCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 221 AMLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~iv~---Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
..|.+.|+++|++|.+++.-. .|...+...+.+++. ..+|.-|+.-|+|.|-
T Consensus 15 ~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG~ 70 (140)
T PF02502_consen 15 EAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTGIGM 70 (140)
T ss_dssp HHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCChhh
Confidence 367788889999999999876 445555555655543 3478888888888763
No 91
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=43.61 E-value=22 Score=29.17 Aligned_cols=30 Identities=37% Similarity=0.421 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHHhhhcCCCcchhHHHHHhH
Q 005900 17 ISAEEALQKVLSVAQRLPPVTVPLYEALGK 46 (671)
Q Consensus 17 is~~eA~~~i~~~~~~~~~e~v~l~~A~Gr 46 (671)
+||++|++.+.+.+..+....+||++++..
T Consensus 1 ~sfEe~l~~Le~Iv~~LE~~~l~Leesl~l 30 (67)
T TIGR01280 1 LSFEEALSELEQIVQKLESGDLALEEALNL 30 (67)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 479999999999999888888998887643
No 92
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=43.53 E-value=43 Score=33.88 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=66.3
Q ss_pred eeccccccccceEEeccCcccccc---hhhhhhhcceeEEE--EeecceEEEeecCCcccccccccccccccccchhHHH
Q 005900 149 IRPVGYDIEKDAIILKSGERIGAS---EIGLLATAGIMMVK--VYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAML 223 (671)
Q Consensus 149 ir~~Ged~~~G~~ll~~G~~l~p~---~i~lLas~Gi~~v~--V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L 223 (671)
.+..|+-+.+|++-+..=...+-. .+..|.. -+.... --.++||.+.+...|.-+.| -.++
T Consensus 43 m~~vG~~w~~gei~vaqe~~as~~~~~~l~~l~~-~l~~~~~~~~~~~~vvl~t~~gd~HdiG-------------~~iv 108 (213)
T cd02069 43 MKVVGDLFGAGKMFLPQVLKSARVMKAAVAYLEP-YMEKEKGENSSKGKIVLATVKGDVHDIG-------------KNLV 108 (213)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHH-HHhhccccCCCCCeEEEEeCCCchhHHH-------------HHHH
Confidence 456788888887766422111111 1112200 011111 11467887776666665544 4589
Q ss_pred HHHHHHhccceeeeec-ccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcc
Q 005900 224 LAAAMQQHCKLIDLGI-VRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 224 ~a~l~~~G~~v~~~~i-v~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~ 282 (671)
..+|+..|++++++|. +| ++.+.+++.+. ++|+|-.|.-+..... .+++.++.
T Consensus 109 ~~~l~~~G~~Vi~LG~~vp--~e~~v~~~~~~---~~~~V~lS~~~~~~~~-~~~~~i~~ 162 (213)
T cd02069 109 GVILSNNGYEVIDLGVMVP--IEKILEAAKEH---KADIIGLSGLLVPSLD-EMVEVAEE 162 (213)
T ss_pred HHHHHhCCCEEEECCCCCC--HHHHHHHHHHc---CCCEEEEccchhccHH-HHHHHHHH
Confidence 9999999999999995 33 56666666653 5899998876554333 23444443
No 93
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=43.52 E-value=42 Score=33.10 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=33.0
Q ss_pred cccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 215 IRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 215 i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
-+||-++.|..+|++.|+++..+ +.|...+. .+.. + +.|.||.+||-+-
T Consensus 7 n~Dsft~nl~~~l~~~g~~v~v~---~~~~~~~~-~~~~-~--~~d~iils~GPg~ 55 (187)
T PRK08007 7 NYDSFTWNLYQYFCELGADVLVK---RNDALTLA-DIDA-L--KPQKIVISPGPCT 55 (187)
T ss_pred CCCccHHHHHHHHHHCCCcEEEE---eCCCCCHH-HHHh-c--CCCEEEEcCCCCC
Confidence 37999999999999999887543 33321111 1221 2 4899999999753
No 94
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=42.18 E-value=38 Score=33.18 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=36.5
Q ss_pred HHHHHHHHhccceeeeecc---cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQQHCKLIDLGIV---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv---~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.++|++.|++|.+++.- +.|...+...+.+++. ..+|.=|..-|+|+|-
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~ 71 (171)
T TIGR01119 17 EVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGI 71 (171)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 5677888899999999963 2345556666666553 2478888888888763
No 95
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=41.67 E-value=41 Score=35.77 Aligned_cols=70 Identities=16% Similarity=0.054 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhccceeeee-----cccCC-H------HHHHHHhhhhhcccccEEEecCCcc-----------cCCccc
Q 005900 219 NRAMLLAAAMQQHCKLIDLG-----IVRDD-E------EELEKTLDNAFSAGIDILLTSGGVS-----------MGDKDF 275 (671)
Q Consensus 219 N~~~L~a~l~~~G~~v~~~~-----iv~Dd-~------~~i~~~l~~a~~~~~DiVIttGG~s-----------~G~~D~ 275 (671)
|+.++.++|++.|.+...+. ++-|+ + ....+.+.++++. .+++|++|..| -|--||
T Consensus 123 Sa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~-~~v~Vv~Gf~g~~~~G~~ttLgRggSD~ 201 (288)
T cd04245 123 NAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDS-DEKLVIPGFYGYSKNGDIKTFSRGGSDI 201 (288)
T ss_pred HHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhC-CCEEEEeCccccCCCCCEEEcCCCchHH
Confidence 67899999999998765554 44332 2 1134555565653 78999999985 446799
Q ss_pred hhhhhcc-cc--eEEEe
Q 005900 276 VKPLLQK-KG--TIYFN 289 (671)
Q Consensus 276 ~~~~l~~-~g--~i~f~ 289 (671)
+..++.. ++ ++.+|
T Consensus 202 tAal~A~~l~A~~v~i~ 218 (288)
T cd04245 202 TGAILARGFQADLYENF 218 (288)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 9888876 44 45444
No 96
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.19 E-value=16 Score=34.58 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=58.6
Q ss_pred eEEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCC
Q 005900 470 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 549 (671)
Q Consensus 470 ~~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~ 549 (671)
++|++-+...| +. -.|.-...++..|++. |++|.+.+...--.|.+.++++ +.+|+|..|+ +.-
T Consensus 11 ~rprvlvak~G--lD---gHd~gakvia~~l~d~-----GfeVi~~g~~~tp~e~v~aA~~-----~dv~vIgvSs-l~g 74 (143)
T COG2185 11 ARPRVLVAKLG--LD---GHDRGAKVIARALADA-----GFEVINLGLFQTPEEAVRAAVE-----EDVDVIGVSS-LDG 74 (143)
T ss_pred CCceEEEeccC--cc---ccccchHHHHHHHHhC-----CceEEecCCcCCHHHHHHHHHh-----cCCCEEEEEe-ccc
Confidence 67888888888 32 2455667888889999 9999998887654444555544 4689998884 555
Q ss_pred CCCCCChHHHHHhhhh
Q 005900 550 TPRDVTPEATKELIER 565 (671)
Q Consensus 550 ~~~D~T~eal~~~~~~ 565 (671)
++.+..++.++.+-++
T Consensus 75 ~h~~l~~~lve~lre~ 90 (143)
T COG2185 75 GHLTLVPGLVEALREA 90 (143)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7888888888887664
No 97
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=41.18 E-value=45 Score=33.16 Aligned_cols=47 Identities=19% Similarity=0.081 Sum_probs=32.4
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
+||-++.|..+|++.|+++..+..-..+.+.+ ++ + +.|.||.+||-+
T Consensus 8 ~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~----~~-~--~~d~iIlsgGP~ 54 (195)
T PRK07649 8 YDSFTFNLVQFLGELGQELVVKRNDEVTISDI----EN-M--KPDFLMISPGPC 54 (195)
T ss_pred CCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH----hh-C--CCCEEEECCCCC
Confidence 68999999999999998876544222223332 21 2 489999999863
No 98
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=40.52 E-value=47 Score=32.69 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=34.5
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc-ccCCccc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV-SMGDKDF 275 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~-s~G~~D~ 275 (671)
+||-++.|..+|++.|+++..+..-..+.+.+ ++ + +.|.||.+||- ++.+...
T Consensus 8 ~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~----~~-~--~~~~iilsgGP~~~~~~~~ 61 (191)
T PRK06774 8 YDSFTYNLYQYFCELGTEVMVKRNDELQLTDI----EQ-L--APSHLVISPGPCTPNEAGI 61 (191)
T ss_pred CCchHHHHHHHHHHCCCcEEEEeCCCCCHHHH----Hh-c--CCCeEEEcCCCCChHhCCC
Confidence 78999999999999998875332111223333 22 2 37899999986 4444433
No 99
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=40.19 E-value=53 Score=34.57 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=33.7
Q ss_pred cchhHHHHHHHHHhccce----eeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 217 DSNRAMLLAAAMQQHCKL----IDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 217 dsN~~~L~a~l~~~G~~v----~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
|.-.--+.+.|++.|+.. ..+.-...|++.+.+.+++..+.+.|+||++|..
T Consensus 14 ~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~ 69 (294)
T PF04392_consen 14 DDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTP 69 (294)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHH
T ss_pred HHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcH
Confidence 333456677788888775 2334457788888888887776679999999843
No 100
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=40.01 E-value=9.9 Score=35.80 Aligned_cols=52 Identities=27% Similarity=0.361 Sum_probs=32.8
Q ss_pred cccHHHHHHHHHHhhhcCCCcchhHHHHHhHHhhhhccCCCCCCCCCccccCceEEEec
Q 005900 16 MISAEEALQKVLSVAQRLPPVTVPLYEALGKVLAEDIRAPDPLPPYPASVKDGYAVVAS 74 (671)
Q Consensus 16 ~is~~eA~~~i~~~~~~~~~e~v~l~~A~GrvlAedI~a~~~~P~f~~SamDGyAv~~~ 74 (671)
.++..+|...+.. ...+.|++.+|.|||+|+-|+. +||==--.|-|=-|..+
T Consensus 50 ~~~P~~a~~~~~~----~~~e~v~l~~~~GrIsae~i~p---YPPGIPll~pGE~it~~ 101 (136)
T PF03711_consen 50 VMTPREAYREAVR----GEKERVPLEEAVGRISAEFIVP---YPPGIPLLVPGERITEE 101 (136)
T ss_dssp SS-HHHHHHHHHT----T-EEEEEGGG-TTSBBSS-BEE---CTTTS-SB-TTEEB-ST
T ss_pred eeCcHHHHHHHHh----hcceEEEccccCCeEEEeeeee---cCCCCcEECCccccccc
Confidence 4556666654432 2467899999999999998875 88877777777776543
No 101
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=39.89 E-value=46 Score=31.79 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=38.3
Q ss_pred HHHHHHHHHhccceeeeecc----cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 221 AMLLAAAMQQHCKLIDLGIV----RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~iv----~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
-.|..+|++.|++|.+++.- +||...+...+.+++. ..+|.-|..-|+|+|-
T Consensus 16 ~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~ 72 (148)
T TIGR02133 16 EALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGE 72 (148)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhh
Confidence 36778888999999999972 3556667777766652 3478888888888764
No 102
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.51 E-value=38 Score=29.55 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEE-ecCCcccCCccchhhhhcccc
Q 005900 218 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILL-TSGGVSMGDKDFVKPLLQKKG 284 (671)
Q Consensus 218 sN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVI-ttGG~s~G~~D~~~~~l~~~g 284 (671)
.+-..+...++++|++....+ -.+....-...|...+. .+|+|| .|+=+|......+++.-++.+
T Consensus 10 ~~~~~~~~~~~~~G~~~~~hg-~~~~~~~~~~~l~~~i~-~aD~VIv~t~~vsH~~~~~vk~~akk~~ 75 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHHG-RDGGDEKKASRLPSKIK-KADLVIVFTDYVSHNAMWKVKKAAKKYG 75 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEEe-cCCCCccchhHHHHhcC-CCCEEEEEeCCcChHHHHHHHHHHHHcC
Confidence 345678899999999988772 12222333334666565 388776 677777766666666666655
No 103
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=38.92 E-value=47 Score=31.74 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=35.6
Q ss_pred HHHHHHHHhccceeeeecc----cCCHHHHHHHhhhhhc-ccccEEEecCCcccC
Q 005900 222 MLLAAAMQQHCKLIDLGIV----RDDEEELEKTLDNAFS-AGIDILLTSGGVSMG 271 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv----~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G 271 (671)
.|.+.|++.|++|++++.- +.|...+...+.+++. ..+|.=|..-|+|.|
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG 71 (148)
T PRK05571 17 EIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIG 71 (148)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 5677888899999999862 3355566666666553 237877777778776
No 104
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=38.71 E-value=37 Score=28.17 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=33.4
Q ss_pred CCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcccc
Q 005900 242 DDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 284 (671)
Q Consensus 242 Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g 284 (671)
.|.+.|.++|.+...+..|++|.+||.-.|-+.+..+--++.|
T Consensus 15 ~D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~g 57 (71)
T PF10686_consen 15 TDHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERG 57 (71)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCC
Confidence 4677899999888766689999999997777777666655555
No 105
>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]
Probab=37.55 E-value=53 Score=35.37 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=61.6
Q ss_pred ccccchhHHHHHHHHHhccceeeeecc-cCCHHHHHHHhhhhhcc--cccEEEecCCcccCCcc--------chhhhhcc
Q 005900 214 QIRDSNRAMLLAAAMQQHCKLIDLGIV-RDDEEELEKTLDNAFSA--GIDILLTSGGVSMGDKD--------FVKPLLQK 282 (671)
Q Consensus 214 ~i~dsN~~~L~a~l~~~G~~v~~~~iv-~Dd~~~i~~~l~~a~~~--~~DiVIttGG~s~G~~D--------~~~~~l~~ 282 (671)
...+|..|.+..++.++ +.+.+...+ .-.-...++.+.+++.+ +-+|++.=|++..++.- -..+.+++
T Consensus 65 SfLrs~~P~~~~li~~~-IsL~Yhetlmaa~G~~aee~l~~~i~~~kg~yILvVEG~v~~~~~G~y~~vgg~~~~e~l~~ 143 (355)
T COG1740 65 SFLRSEHPTANDLILEL-ISLEYHETLMAASGTQAEELLEDAILKYKGKYILVVEGAVPLGENGMYCIVGGEPFKEILRK 143 (355)
T ss_pred HHhccCCCCHHHHHHHH-HhhhhhhhhhhhcchhHHHHHHHHHHhcCCceEEEEeCCccCCCCceEEEEcChhHHHHHHH
Confidence 44566667777777777 555554433 22222233444444432 46899999999888621 12333333
Q ss_pred cc----eEE-------Eecc---cccCCCcceeeEeccccCchhhhhhhhhccCCCCceeEEEEEeEe
Q 005900 283 KG----TIY-------FNKV---CMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLY 336 (671)
Q Consensus 283 ~g----~i~-------f~~v---~~~PGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~ 336 (671)
.+ -++ +.+| ..+|+....+-.+. +.+||+.+||.|..--..+..+
T Consensus 144 aA~~A~aIiAvGtCAs~GgI~AA~pnps~a~~i~ev~---------~~kpVINiPGCPp~pd~iv~tl 202 (355)
T COG1740 144 AAEGASAIIAVGTCASWGGIQAAKPNPTGAGPLSEVI---------KDKPVINIPGCPPNPDWIVATL 202 (355)
T ss_pred HhhcCceEEEEecccccCCeeccCCCCCCcccceecc---------cCCceeeCCCCCCCchhHHHHH
Confidence 32 222 2232 34444444443332 2589999999998765544433
No 106
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=36.40 E-value=77 Score=26.58 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005900 220 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
+-+++..++.+|++++.-.--.--..++++.++.+-+ ++++.||-=|
T Consensus 22 Ge~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~-G~~~~itpDG 68 (74)
T PF04028_consen 22 GELIARVLERFGFRTIRGSSSRGGARALREMLRALKE-GYSIAITPDG 68 (74)
T ss_pred HHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC-CCeEEEeCCC
Confidence 6789999999999999888777777888888887764 7899988654
No 107
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=35.85 E-value=54 Score=32.12 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=36.6
Q ss_pred HHHHHHHHhccceeeeecc---cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQQHCKLIDLGIV---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv---~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|++++.- +.|...+...+.+++. ..+|.-|..-|||+|-
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 71 (171)
T PRK08622 17 AVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGI 71 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHHH
Confidence 5777888899999999973 3345556666666553 2478888888888763
No 108
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=35.79 E-value=49 Score=33.16 Aligned_cols=65 Identities=23% Similarity=0.157 Sum_probs=48.8
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~ 282 (671)
.||-+.-..+++++.+.++..+..-+|+ ..++.+|+.++++++|-|+..|++|- +-|++-.-+.-
T Consensus 45 fDSi~~~~~~~~~~~~~~~~~~~~eKD~-TD~e~Al~~~~~~~~~~i~i~Ga~Gg-R~DH~lani~~ 109 (203)
T TIGR01378 45 FDSIDEEELDFYKKAGVKIIVFPPEKDT-TDLELALKYALERGADEITILGATGG-RLDHTLANLNL 109 (203)
T ss_pred cccCCHHHHHHHHHcCCceEEcCCCCCC-CHHHHHHHHHHHCCCCEEEEEcCCCC-cHHHHHHHHHH
Confidence 5777788888888888887777666654 55788888887767888888888864 78998665543
No 109
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=35.19 E-value=76 Score=30.43 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=37.1
Q ss_pred HHHHHHHHhccceeeeeccc--CCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcccc
Q 005900 222 MLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 284 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g 284 (671)
-....|+++|... +..++. -.++.+.+.++++-.+++|++|+..|.+. ..+-++..+-
T Consensus 18 ~a~~~L~~~gi~~-~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a----~Lpgvva~~t 77 (150)
T PF00731_consen 18 EAAKTLEEFGIPY-EVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSA----ALPGVVASLT 77 (150)
T ss_dssp HHHHHHHHTT-EE-EEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS------HHHHHHHHS
T ss_pred HHHHHHHHcCCCE-EEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcc----cchhhheecc
Confidence 3556778888654 334433 46788888888775556899998888754 6677776643
No 110
>PLN02335 anthranilate synthase
Probab=34.89 E-value=69 Score=32.55 Aligned_cols=57 Identities=23% Similarity=0.135 Sum_probs=34.5
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc-cCCccchhhh
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS-MGDKDFVKPL 279 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s-~G~~D~~~~~ 279 (671)
+|+-.+.|..+|++.|+++..+ +.|...+.+ +.. . +.|.||.+||-+ +-+.|...+.
T Consensus 27 ~dsft~~i~~~L~~~g~~~~v~---~~~~~~~~~-~~~-~--~~d~iVisgGPg~p~d~~~~~~~ 84 (222)
T PLN02335 27 YDSFTYNLCQYMGELGCHFEVY---RNDELTVEE-LKR-K--NPRGVLISPGPGTPQDSGISLQT 84 (222)
T ss_pred CCCHHHHHHHHHHHCCCcEEEE---ECCCCCHHH-HHh-c--CCCEEEEcCCCCChhhccchHHH
Confidence 4688999999999999887654 322111211 111 1 378899888864 5444443333
No 111
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=34.01 E-value=25 Score=35.53 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=46.4
Q ss_pred cCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcccceEEEecccccCCCcceeeEeccccCchhhhhhhhhc
Q 005900 241 RDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAF 320 (671)
Q Consensus 241 ~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g~i~f~~v~~~PGkp~~~a~~~~~~~~~~~~~~~~v~ 320 (671)
||..+.+.+.++.+.+.+.|.|+..|-+++.. +-+.+.++.+- .. .++|++
T Consensus 7 P~k~e~~~~ia~~v~~~gtDaI~VGGS~gvt~-~~~~~~v~~ik------------------~~----------~~lPvi 57 (205)
T TIGR01769 7 PEKSDEIEKIAKNAKDAGTDAIMVGGSLGIVE-SNLDQTVKKIK------------------KI----------TNLPVI 57 (205)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCcCCCCH-HHHHHHHHHHH------------------hh----------cCCCEE
Confidence 55555555555555555689999988776633 33333333220 00 136888
Q ss_pred cCCCCceeEEEEEeEeeechh
Q 005900 321 GLPGNPVSCIVCFHLYIVPAI 341 (671)
Q Consensus 321 ~LPGnP~aa~~~~~~~v~P~L 341 (671)
--|||+....-.+..++.|.+
T Consensus 58 lfp~~~~~i~~~aD~~~~~sl 78 (205)
T TIGR01769 58 LFPGNVNGLSRYADAVFFMSL 78 (205)
T ss_pred EECCCccccCcCCCEEEEEEe
Confidence 889999999888998888876
No 112
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=33.98 E-value=38 Score=28.56 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHHhhhcCCCcchhHHHHHh
Q 005900 16 MISAEEALQKVLSVAQRLPPVTVPLYEALG 45 (671)
Q Consensus 16 ~is~~eA~~~i~~~~~~~~~e~v~l~~A~G 45 (671)
-.||++|++.+.+.+..+....+||.+|+.
T Consensus 4 ~~sfEeal~~LE~Iv~~LE~~~l~Leesl~ 33 (76)
T PRK14063 4 KLSFEEAISQLEHLVSKLEQGDVPLEEAIS 33 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 378999999999999988888888887654
No 113
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=33.91 E-value=55 Score=30.91 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=50.3
Q ss_pred EEEEeecccccCCCCC-CCCC--ceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCC
Q 005900 475 AILTVSDTVASGAGPD-RSGP--RAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 551 (671)
Q Consensus 475 ~IIt~GdEl~~G~~~D-~n~~--~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~ 551 (671)
-|+.+||.++.|.-.. .+++ .+++.|.+. ..++++...++-.+....+.+.+.+.+...+.|+|+...|+==..
T Consensus 2 ~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~---~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~ 78 (177)
T cd01822 2 TILALGDSLTAGYGLPPEEGWPALLQKRLDAR---GIDVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGL 78 (177)
T ss_pred eEEEEccccccCcCCCCCCchHHHHHHHHHHh---CCCeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccc
Confidence 4778899998885432 2221 122333211 126788888888887776666676655434789999988865333
Q ss_pred CCCChHHHHH
Q 005900 552 RDVTPEATKE 561 (671)
Q Consensus 552 ~D~T~eal~~ 561 (671)
...+++.+.+
T Consensus 79 ~~~~~~~~~~ 88 (177)
T cd01822 79 RGIPPDQTRA 88 (177)
T ss_pred cCCCHHHHHH
Confidence 3344444333
No 114
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=33.76 E-value=70 Score=34.02 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhccceeeeecccCCHHHHH---------HHhhhhhcccccEEEecCCcccCCccchhhhhcccc-eEEEe
Q 005900 220 RAMLLAAAMQQHCKLIDLGIVRDDEEELE---------KTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFN 289 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~---------~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g-~i~f~ 289 (671)
+..+...|+++|+++..+..-++..+..+ ..+.+.+. ++|+||+|=...+ +..+.++.+. .-++-
T Consensus 164 G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~-~aDiVI~t~p~~~----i~~~~l~~~~~g~vII 238 (296)
T PRK08306 164 GMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVG-KIDIIFNTIPALV----LTKEVLSKMPPEALII 238 (296)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhC-CCCEEEECCChhh----hhHHHHHcCCCCcEEE
Confidence 45777888888987765544333222211 12344454 5999998733221 2334444443 33455
Q ss_pred cccccCCC
Q 005900 290 KVCMKPGK 297 (671)
Q Consensus 290 ~v~~~PGk 297 (671)
.++..||.
T Consensus 239 Dla~~pgg 246 (296)
T PRK08306 239 DLASKPGG 246 (296)
T ss_pred EEccCCCC
Confidence 57888886
No 115
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=33.69 E-value=69 Score=32.26 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=48.5
Q ss_pred hhhhhhhcceeEEEEeecceEEEeecCCccccccccccccccccc---chhHHHHHHHHHhccceeeeecccCCHHHHHH
Q 005900 173 EIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRD---SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK 249 (671)
Q Consensus 173 ~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~d---sN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~ 249 (671)
.|+.||+-=+.+ --..|+|+|+|.|- +-+.|. .+..| ..+-++.+.++..|+++..++|+ |++
T Consensus 122 ri~~laaeflrr--~~~ep~VaVlSgGR-lgDlGR-----~~~VDrtladgEfva~~~k~~g~~v~H~~IL------IEe 187 (256)
T COG4002 122 RIIELAAEFLRR--TGIEPKVAVLSGGR-LGDLGR-----NKEVDRTLADGEFVAEHFKGNGVDVIHYGIL------IEE 187 (256)
T ss_pred HHHHHHHHHHHH--hCCCcceEEecCCc-chhccC-----cchhhhhhhchHHHHHHHhccCceeEEeeeE------HHH
Confidence 344555532333 22579999999873 332222 22222 23678999999999999999996 334
Q ss_pred HhhhhhcccccEEEecCCc
Q 005900 250 TLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 250 ~l~~a~~~~~DiVIttGG~ 268 (671)
+ +++ .++||---|.
T Consensus 188 a----lkd-gnvIia~dGI 201 (256)
T COG4002 188 A----LKD-GNVIIAVDGI 201 (256)
T ss_pred H----hhc-CCEEEEecCc
Confidence 4 433 4888876665
No 116
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=33.65 E-value=62 Score=30.77 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=34.8
Q ss_pred HHHHHHHHhccceeeeeccc---CCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~---Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.+++.-. -|...+...+.+++. ..+|.-|..-|+|+|-
T Consensus 16 ~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~ 70 (143)
T TIGR01120 16 EIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGM 70 (143)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHH
Confidence 56777788999999998632 234445555555442 2478888888888763
No 117
>PRK05637 anthranilate synthase component II; Provisional
Probab=33.64 E-value=68 Score=32.30 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=32.3
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
+|++.+.|..+|++.|+++. +++.|.. + +.+.. .+.|.||.+||-+-
T Consensus 10 ~dsf~~nl~~~l~~~g~~~~---v~~~~~~-~-~~l~~---~~~~~iIlsgGPg~ 56 (208)
T PRK05637 10 HDSFVYNLVDAFAVAGYKCT---VFRNTVP-V-EEILA---ANPDLICLSPGPGH 56 (208)
T ss_pred CcCHHHHHHHHHHHCCCcEE---EEeCCCC-H-HHHHh---cCCCEEEEeCCCCC
Confidence 57899999999999998764 4444421 1 12221 24799999999764
No 118
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.33 E-value=57 Score=34.70 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=43.8
Q ss_pred ecceEEEeecCC-----ccccccccccccccc--ccchhHHHHHHHHHhccceeeeecccCCHH----HHHHHhhhhhcc
Q 005900 189 RTPTIAVLSTGD-----ELVEPTTQCLDRGQI--RDSNRAMLLAAAMQQHCKLIDLGIVRDDEE----ELEKTLDNAFSA 257 (671)
Q Consensus 189 ~~prV~iistGd-----Elv~~~~~~~~~G~i--~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~----~i~~~l~~a~~~ 257 (671)
+++|++|+.+|+ .|+..-+...-..+| .=||.+-+.++.++.|..+..+..-+++.+ .+.+.|++.
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~--- 168 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETS--- 168 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHh---
Confidence 678999999986 122111100001122 235666677888889988776554444433 344455442
Q ss_pred cccEEEecC
Q 005900 258 GIDILLTSG 266 (671)
Q Consensus 258 ~~DiVIttG 266 (671)
++|+|+..|
T Consensus 169 ~~Dlivlag 177 (289)
T PRK13010 169 GAELVVLAR 177 (289)
T ss_pred CCCEEEEeh
Confidence 589999988
No 119
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=33.19 E-value=54 Score=34.32 Aligned_cols=43 Identities=26% Similarity=0.226 Sum_probs=27.6
Q ss_pred HHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCc
Q 005900 224 LAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDK 273 (671)
Q Consensus 224 ~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~ 273 (671)
...+++.|+++..+.+- |.. .....++ ++|.||..||.|.+++
T Consensus 21 ~~Al~~aG~~v~~v~~~-~~~-----~~~~~l~-~~DgLvipGGfs~gD~ 63 (261)
T PRK01175 21 VKAFRRLGVEPEYVHIN-DLA-----AERKSVS-DYDCLVIPGGFSAGDY 63 (261)
T ss_pred HHHHHHCCCcEEEEeec-ccc-----ccccchh-hCCEEEECCCCCcccc
Confidence 46777899997665442 211 1112244 4999999999887764
No 120
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=33.11 E-value=64 Score=30.97 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=36.0
Q ss_pred HHHHHHHH--hccceeeeecc---cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQ--QHCKLIDLGIV---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~--~G~~v~~~~iv---~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++ .|++|++++.- +.|...+...+.+++. ..+|.-|..-|+|+|-
T Consensus 19 ~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtGiG~ 75 (151)
T PTZ00215 19 EIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGI 75 (151)
T ss_pred HHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcHHH
Confidence 57788889 99999999862 3455556666666552 2478777777787763
No 121
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=33.09 E-value=52 Score=31.82 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=30.6
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
.++|...+...|++.|+++..+..-. +.+ +.-++ ++|.||.+||.+
T Consensus 7 g~~~~~~~~~~l~~~G~~~~~~~~~~-~~~------~~~~~-~~dgvIl~Gg~~ 52 (181)
T cd01742 7 GSQYTHLIARRVRELGVYSEILPNTT-PLE------EIKLK-NPKGIILSGGPS 52 (181)
T ss_pred CCchHHHHHHHHHhcCceEEEecCCC-Chh------hhccc-CCCEEEECCCcc
Confidence 46788899999999998765443321 111 11233 489999999864
No 122
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.72 E-value=82 Score=34.82 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=33.9
Q ss_pred HHHHHHHHhccceeeeecc-c-CCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 222 MLLAAAMQQHCKLIDLGIV-R-DDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv-~-Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
.+...|++.|.++..+.-+ | -+.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 50 ~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~ 100 (383)
T PRK09860 50 DVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSP 100 (383)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 5677788888876555433 3 23466777777776667999997777544
No 123
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=32.68 E-value=64 Score=31.61 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=36.4
Q ss_pred HHHHHHHHhccceeeeecc---cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQQHCKLIDLGIV---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv---~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.++|++.|++|.+++.- +.|...+...+.+++. ..+|.-|..-|+|+|-
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 71 (171)
T PRK12615 17 AVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGI 71 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 5778888899999999973 3345556666665552 2478888888888863
No 124
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=32.39 E-value=1e+02 Score=27.31 Aligned_cols=47 Identities=19% Similarity=0.008 Sum_probs=33.3
Q ss_pred cchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005900 217 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 217 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
+-.-.+|++.|++.|+++..++.-. +.+.+.+.+++. +.|+|..|.-
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~~-~~~~l~~~~~~~---~pd~V~iS~~ 60 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDANV-PPEELVEALRAE---RPDVVGISVS 60 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESSB--HHHHHHHHHHT---TCSEEEEEES
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCC-CHHHHHHHHhcC---CCcEEEEEcc
Confidence 3446789999999999998775533 336666666653 4899988764
No 125
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=32.19 E-value=54 Score=29.10 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=34.7
Q ss_pred ccccccchhHHHHHHHHHhccceeeeecccCCHHHHH----------HHhhhhhcccccEEEecC
Q 005900 212 RGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELE----------KTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 212 ~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~----------~~l~~a~~~~~DiVIttG 266 (671)
...+|+|-+..|...|++.|+++..+...-++..... +-+.++++ ++|+||..-
T Consensus 11 ~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vvl~t 74 (106)
T PF03720_consen 11 TDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALK-GADAVVLAT 74 (106)
T ss_dssp SS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHT-TESEEEESS
T ss_pred CcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhc-CCCEEEEEe
Confidence 4678999999999999999999988876554443333 12345555 699887654
No 126
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.19 E-value=40 Score=29.77 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=26.4
Q ss_pred ccccHHHHHHHHHHhhhcCCCcchhHHHHHh
Q 005900 15 KMISAEEALQKVLSVAQRLPPVTVPLYEALG 45 (671)
Q Consensus 15 ~~is~~eA~~~i~~~~~~~~~e~v~l~~A~G 45 (671)
.-.||++|++.+.+.+..+....+||++++.
T Consensus 6 ~~~sFEeal~~LEeIV~~LEsgdl~LEesl~ 36 (95)
T PRK14069 6 SKISFEDALRELEQIAEKLERQDFSLEESLK 36 (95)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3579999999999999999888888887654
No 127
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.95 E-value=38 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHHhhhcCCCcchhHHHHHh
Q 005900 17 ISAEEALQKVLSVAQRLPPVTVPLYEALG 45 (671)
Q Consensus 17 is~~eA~~~i~~~~~~~~~e~v~l~~A~G 45 (671)
.||++|++.+.+.+..+....+||.+++-
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l~Leesl~ 34 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSASLEDSLD 34 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 59999999999999999888999988764
No 128
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=31.51 E-value=96 Score=36.12 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=78.8
Q ss_pred chhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccC---------
Q 005900 172 SEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRD--------- 242 (671)
Q Consensus 172 ~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~D--------- 242 (671)
.+=++|.+.|+++-.--.||.|+|+.|.+|+.+.... .+.-...+++-+++.|+....+..+.+
T Consensus 20 ~~ra~l~a~G~~~ed~~~kP~IgI~ns~se~~Pch~h-------l~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~s 92 (571)
T PRK06131 20 YHRSFMKNQGYPDELFDGRPIIGICNTWSDLNPCNAH-------FRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTA 92 (571)
T ss_pred HHHHHHHHcCCChHHhccCCEEEEecccccCcCchhh-------HHHHHHHHHHHHHHcCCEEEecCccCccccccCccc
Confidence 4668999999988776449999999999999865432 334455666777778876665554321
Q ss_pred --CHHHHHHHhhhhhc-ccccEEEecCCcccCCccchhhh----hcccc--eEEEecccccCCC
Q 005900 243 --DEEELEKTLDNAFS-AGIDILLTSGGVSMGDKDFVKPL----LQKKG--TIYFNKVCMKPGK 297 (671)
Q Consensus 243 --d~~~i~~~l~~a~~-~~~DiVIttGG~s~G~~D~~~~~----l~~~g--~i~f~~v~~~PGk 297 (671)
..+.|...++..++ +..|-+|..||- |-+... ..+++ .+.+.+=.|.||.
T Consensus 93 L~sRelIAdsiE~~~~a~~~Dg~v~i~~C-----DK~~PG~lMaa~rlniPsi~v~gGpm~~G~ 151 (571)
T PRK06131 93 MLYRNLAAMDVEEMIRGYPIDGVVLLGGC-----DKTTPALLMGAASVDLPAIVLSGGPMLNGK 151 (571)
T ss_pred cccHHHHHHHHHHHHhcCCcceEEEEeeC-----CCCcHHHHHHHHhcCCCEEEEeCCCcCCCC
Confidence 25667777777664 347989988876 665543 22344 6778888888884
No 129
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=31.49 E-value=53 Score=34.35 Aligned_cols=62 Identities=29% Similarity=0.296 Sum_probs=32.1
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005900 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
||||+|+.. ||.. .| .-+...++..|+++..+.+ .| .+... ..++ ++|+|+..||.|
T Consensus 1 kpkV~Vl~~------pGtN-------ce---~e~~~A~~~aG~~~~~v~~-~d---l~~~~--~~l~-~~~~lvipGGFS 57 (259)
T PF13507_consen 1 KPKVAVLRF------PGTN-------CE---RETAAAFENAGFEPEIVHI-ND---LLSGE--SDLD-DFDGLVIPGGFS 57 (259)
T ss_dssp --EEEEEE-------TTEE-------EH---HHHHHHHHCTT-EEEEEEC-CH---HHTTS----GC-C-SEEEE-EE-G
T ss_pred CCEEEEEEC------CCCC-------CH---HHHHHHHHHcCCCceEEEE-Ee---ccccc--Cchh-hCcEEEECCccC
Confidence 688888764 3322 11 2345556788999877543 21 11110 1344 599999999999
Q ss_pred cCCcc
Q 005900 270 MGDKD 274 (671)
Q Consensus 270 ~G~~D 274 (671)
.||+-
T Consensus 58 ~gD~l 62 (259)
T PF13507_consen 58 YGDYL 62 (259)
T ss_dssp GGGTT
T ss_pred ccccc
Confidence 99876
No 130
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=31.13 E-value=1.1e+02 Score=35.66 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=77.1
Q ss_pred chhhhhhhcceeEEEEe-ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeeccc---------
Q 005900 172 SEIGLLATAGIMMVKVY-RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVR--------- 241 (671)
Q Consensus 172 ~~i~lLas~Gi~~v~V~-~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~--------- 241 (671)
.+-++|.+.|++.=... .||.|+|+.|.+|+.+.... .+.-...++.-+.+.|+....+....
T Consensus 28 ~~ra~~~a~G~~~ed~~~~KP~IgI~ns~se~~Pch~h-------l~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~ 100 (596)
T PRK13017 28 LYLERYMNYGLTREELQSGKPIIGIAQTGSDLSPCNRH-------HLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPT 100 (596)
T ss_pred HHHHHHHHcCCChHHhccCCCEEEEEecccCCcCchhh-------HHHHHHHHHHHHHHcCCeeEecccccccccCCCcc
Confidence 56789999999887765 79999999999999865432 22234455566666776655554321
Q ss_pred --CCHHHHHHHhhhhhc-ccccEEEecCCcccCCccchhhhh----cccc--eEEEecccccCCC
Q 005900 242 --DDEEELEKTLDNAFS-AGIDILLTSGGVSMGDKDFVKPLL----QKKG--TIYFNKVCMKPGK 297 (671)
Q Consensus 242 --Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~~D~~~~~l----~~~g--~i~f~~v~~~PGk 297 (671)
-..+.|...++..+. ..+|-+|..+|- |-+.... .+++ .++..+=.|.||.
T Consensus 101 ~l~sRelIAd~iE~~~~a~~~Dg~V~i~gC-----DK~~PG~lMaaarlniP~i~v~GG~m~~G~ 160 (596)
T PRK13017 101 AALDRNLAYLGLVEILYGYPLDGVVLTTGC-----DKTTPACLMAAATVDLPAIVLSGGPMLDGW 160 (596)
T ss_pred cccCHHHHHHHHHHHHhcCCcceEEEeccC-----CCccHHHHHHHHhcCCCEEEEeCCCcCCCC
Confidence 135567777776654 357988888876 7655432 2333 6788888888884
No 131
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=30.92 E-value=68 Score=29.92 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=35.9
Q ss_pred CCceEEEecc--ccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHh
Q 005900 508 GGAKVVATDV--VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKEL 562 (671)
Q Consensus 508 ~G~~v~~~~i--v~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~ 562 (671)
+|+++.++++ ++|=+-+-+.-|++ ++||+||+-|=.|+++.|..---.+..
T Consensus 29 ~~~~i~R~TVPGIKdlpvaakrLiee----eGCd~Vi~lG~~G~t~~Dk~~~~~aS~ 81 (154)
T COG1731 29 PGIKIKRYTVPGIKDLPVAAKRLIEE----EGCDIVIALGWVGPTEKDKYSYLAASI 81 (154)
T ss_pred CCCceEEeeCCCcccChHHHHHHHHh----cCCcEEEEccCcCcchhhHHHHHHHhh
Confidence 3777777664 34555555554543 689999999999999999765544444
No 132
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=30.86 E-value=74 Score=33.69 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=43.8
Q ss_pred ecceEEEeecCCc--cccccccccccccc------ccchhHHHHHHHHHhccceeeeecccCCHHH----HHHHhhhhhc
Q 005900 189 RTPTIAVLSTGDE--LVEPTTQCLDRGQI------RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEE----LEKTLDNAFS 256 (671)
Q Consensus 189 ~~prV~iistGdE--lv~~~~~~~~~G~i------~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~----i~~~l~~a~~ 256 (671)
+++|++|+.+|+- +...-.. ...|.+ .=||.+-+.++.+++|..+.....-.++.+. +.+.|++
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~-~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~--- 158 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWR-WYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQ--- 158 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHH-HHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHH---
Confidence 5689999999852 1100000 112222 2267788888888999887665543333333 3444443
Q ss_pred ccccEEEecC
Q 005900 257 AGIDILLTSG 266 (671)
Q Consensus 257 ~~~DiVIttG 266 (671)
.++|+|++.|
T Consensus 159 ~~~Dlivlag 168 (280)
T TIGR00655 159 YQVDLVVLAK 168 (280)
T ss_pred hCCCEEEEeC
Confidence 2589999998
No 133
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=30.66 E-value=79 Score=33.57 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=44.4
Q ss_pred ecceEEEeecCC-----cccccccccccccccc--cchhHHHHHHHHHhccceeeeecccCCHHH----HHHHhhhhhcc
Q 005900 189 RTPTIAVLSTGD-----ELVEPTTQCLDRGQIR--DSNRAMLLAAAMQQHCKLIDLGIVRDDEEE----LEKTLDNAFSA 257 (671)
Q Consensus 189 ~~prV~iistGd-----Elv~~~~~~~~~G~i~--dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~----i~~~l~~a~~~ 257 (671)
+++||+|+.+|+ .|+..-...--..+|. =||.+-+.++.+++|..+.....-+++.+. +.+.|++ .
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~---~ 164 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEE---S 164 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHH---h
Confidence 678999999984 1110000000012222 256667888889999987665443344333 3444443 2
Q ss_pred cccEEEecCCccc
Q 005900 258 GIDILLTSGGVSM 270 (671)
Q Consensus 258 ~~DiVIttGG~s~ 270 (671)
++|+|++.|=+-.
T Consensus 165 ~~Dlivlagy~~i 177 (286)
T PRK13011 165 GAELVVLARYMQV 177 (286)
T ss_pred CcCEEEEeChhhh
Confidence 5899999984433
No 134
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.63 E-value=47 Score=28.32 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=27.5
Q ss_pred ccccHHHHHHHHHHhhhcCCCcchhHHHHHhH
Q 005900 15 KMISAEEALQKVLSVAQRLPPVTVPLYEALGK 46 (671)
Q Consensus 15 ~~is~~eA~~~i~~~~~~~~~e~v~l~~A~Gr 46 (671)
.-.+|++|++.+.+.+..+....+||.+++..
T Consensus 8 ~~~sfEea~~~LEeIv~~LE~~~l~Lees~~l 39 (80)
T PRK00977 8 KPLSFEEALAELEEIVTRLESGDLPLEESLAA 39 (80)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 45799999999999999998889999887643
No 135
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=30.38 E-value=87 Score=31.20 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=50.8
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
.+++|.+.+..+|.-+.| -.++..+|+..|++++++|.-- ..+.+.+++++. ++|+|-.|--.
T Consensus 83 ~~~~vv~~t~~gd~H~lG-------------~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~~---~pd~v~lS~~~ 145 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIG-------------KNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKKE---KPLMLTGSALM 145 (197)
T ss_pred CCCeEEEEeCCCchhHHH-------------HHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHHc---CCCEEEEcccc
Confidence 357887776666665443 4689999999999999998522 246666666653 68999988855
Q ss_pred ccCCccchhhhhcc
Q 005900 269 SMGDKDFVKPLLQK 282 (671)
Q Consensus 269 s~G~~D~~~~~l~~ 282 (671)
.....+ +++.++.
T Consensus 146 ~~~~~~-~~~~i~~ 158 (197)
T TIGR02370 146 TTTMYG-QKDINDK 158 (197)
T ss_pred ccCHHH-HHHHHHH
Confidence 444333 3444443
No 136
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.30 E-value=46 Score=28.09 Aligned_cols=31 Identities=35% Similarity=0.358 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHHhhhcCCCcchhHHHHHhH
Q 005900 16 MISAEEALQKVLSVAQRLPPVTVPLYEALGK 46 (671)
Q Consensus 16 ~is~~eA~~~i~~~~~~~~~e~v~l~~A~Gr 46 (671)
-.||++|++.+.+.+..+....+||.+++..
T Consensus 5 ~~sfEeal~~Le~IV~~LE~gdl~Leesl~l 35 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDNETVSLEESLDL 35 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4699999999999999998889999887643
No 137
>PRK09273 hypothetical protein; Provisional
Probab=30.28 E-value=67 Score=32.53 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=36.2
Q ss_pred HHHHHHHHhccceeeeecccC-----CHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQQHCKLIDLGIVRD-----DEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~D-----d~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.++|.-.+ |.-.+...+..++. ..+|..|+.-|||.|-
T Consensus 21 ~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG~ 77 (211)
T PRK09273 21 ALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNSKAVDFVVTGCGTGQGA 77 (211)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCcHHHH
Confidence 456677889999999997443 34445555555442 3489999999999874
No 138
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=29.79 E-value=20 Score=34.33 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=60.2
Q ss_pred CceEEEeccc----cCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccch
Q 005900 509 GAKVVATDVV----PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPF 584 (671)
Q Consensus 509 G~~v~~~~iv----~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg 584 (671)
|++|..++.- +||...+...+.+......+|.-|..-|||.|-- +..-+.+|+.-..-.. .-.
T Consensus 26 g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~s---------iaANK~~GiRAA~~~d----~~s 92 (148)
T TIGR02133 26 EPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEA---------IAANKVKGARAALAWD----TAS 92 (148)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhhe---------eeecccCCeEEEEECC----HHH
Confidence 8999998862 4567778887877775567899999999996631 1122344543321111 001
Q ss_pred hhhcccccccccceEEEeCCCChhhHHHHHHHHHHHH
Q 005900 585 AMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 585 ~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
+. .+=..|+.-|++|++--.....+++.+--+|
T Consensus 93 A~----~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fl 125 (148)
T TIGR02133 93 AG----RARLHNNANVVGAGMRMHGLEEAFRLVFEFL 125 (148)
T ss_pred HH----HHHHHcCCcEEEECCcccCHHHHHHHHHHHH
Confidence 11 1113688999999998887777776654444
No 139
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=29.49 E-value=17 Score=34.53 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=67.0
Q ss_pred CCCCCceEEEecCCccccCCceEEEecc---ccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhc
Q 005900 490 DRSGPRAVSVVNSSSEKLGGAKVVATDV---VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERE 566 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~i---v~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~ 566 (671)
|..|..+.+.|.+++++. |++|..++. =+.|.-.+...+.+.....++|.-|..-|||.|- .= ..-+
T Consensus 6 DhaG~~lK~~l~~~L~~~-g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~--------si-aANK 75 (144)
T TIGR00689 6 DHAGLELKSEIIEHLKQK-GHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGM--------SI-AANK 75 (144)
T ss_pred CcchHHHHHHHHHHHHHC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH--------HH-HHhc
Confidence 333433333333333333 999999886 3446667777777776556899999999999662 22 2223
Q ss_pred CCCeeeeeecccccccch-hhhcccccccccceEEEeCCCChhhHHHHHHHHHHHH
Q 005900 567 TPGLLYVMMQESLKVTPF-AMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 567 l~gi~e~~~~~~~~~~pg-~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
.||+.-..- ..+. +. .+-..|+.-|++|++--.+...+.+.+--+|
T Consensus 76 ~~GIraa~~-----~d~~~A~----~ar~hNnaNVl~lGar~ig~~~a~~iv~~fL 122 (144)
T TIGR00689 76 FKGIRAALC-----VDEYTAA----LARQHNDANVLCLGSRVVGVELALSIVDAFL 122 (144)
T ss_pred CCCeEEEEE-----CCHHHHH----HHHHhcCCcEEEECccccCHHHHHHHHHHHH
Confidence 566543321 1111 11 2234688999999988777666665544444
No 140
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=29.19 E-value=65 Score=32.30 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=48.5
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~ 282 (671)
.||-++-+.+.+++.|.++..+..-+| ..+++.+|+.+.+++++-|+..|++|- +-|++-.-+.-
T Consensus 49 fDSi~~~~~~~~~~~~~~~~~~p~~KD-~TD~e~Al~~~~~~~~~~i~i~Ga~Gg-R~DH~lani~~ 113 (208)
T cd07995 49 FDSISPEVLEYYKSKGVEIIHFPDEKD-FTDFEKALKLALERGADEIVILGATGG-RLDHTLANLNL 113 (208)
T ss_pred CcCCCHHHHHHHHhcCCeEEECCCCCC-CCHHHHHHHHHHHcCCCEEEEEccCCC-cHHHHHHHHHH
Confidence 577777888888888777666554333 466888888888777888999999875 88988665543
No 141
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=29.19 E-value=89 Score=29.64 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHHhccceeeeec-ccCCHHHHHHHhhhhh-cccccEEEecCCcccC
Q 005900 222 MLLAAAMQQHCKLIDLGI-VRDDEEELEKTLDNAF-SAGIDILLTSGGVSMG 271 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~i-v~Dd~~~i~~~l~~a~-~~~~DiVIttGG~s~G 271 (671)
.|.+.|++.|++|++++. -+.|...+...+.+++ +..+|.=|..-|+|.|
T Consensus 17 ~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG 68 (141)
T TIGR01118 17 VIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAG 68 (141)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHh
Confidence 567788889999999996 1224445555555544 2347766666677765
No 142
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=28.90 E-value=15 Score=38.68 Aligned_cols=72 Identities=18% Similarity=0.297 Sum_probs=60.4
Q ss_pred ccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcc
Q 005900 210 LDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 282 (671)
Q Consensus 210 ~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~ 282 (671)
...|.+.|+|+......+...|.++....++.||..++.+...+...+ .+.|+.+||.+..-.|.+.+.++.
T Consensus 16 ~~~~~~~~t~~sf~~~~~~~~~~~~~s~~~~~~d~~q~~~~~~~l~~~-~e~i~~a~~i~~~~~~i~~E~~a~ 87 (282)
T KOG2644|consen 16 LANGSTEDTNSSFKGLHLSTSGVQLKSINIVDDDAAQILDEVLRLTRQ-LEFILKAGGIGPTHDDITQEEMAL 87 (282)
T ss_pred hcccceeeeeeeccccccccccccceeeecccchHHHHHHHHHHHHHH-HHHHHHhhccCCccchhhHHHHHH
Confidence 346889999999999999999999988989999998877666666543 799999999999999998665543
No 143
>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]
Probab=28.36 E-value=2.3e+02 Score=30.65 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=18.6
Q ss_pred ccceEEEeCCCChhhHHHHHHHHH
Q 005900 595 RGSTLIINMPGNPNAVAECMEALL 618 (671)
Q Consensus 595 ~~~~~i~~LPG~P~a~~~~~~~il 618 (671)
..+++|+++||.|-.-..++..++
T Consensus 180 ~~~kpVINiPGCPp~pd~iv~tl~ 203 (355)
T COG1740 180 IKDKPVINIPGCPPNPDWIVATLL 203 (355)
T ss_pred ccCCceeeCCCCCCCchhHHHHHH
Confidence 458999999999987766665543
No 144
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.20 E-value=45 Score=28.46 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=25.8
Q ss_pred ccccHHHHHHHHHHhhhcCCCcchhHHHHHh
Q 005900 15 KMISAEEALQKVLSVAQRLPPVTVPLYEALG 45 (671)
Q Consensus 15 ~~is~~eA~~~i~~~~~~~~~e~v~l~~A~G 45 (671)
.-.||++|++.+.+.+..+....+||.+++-
T Consensus 5 k~~sfEeal~~LEeIV~~LE~~~l~Lees~~ 35 (80)
T PRK14067 5 KTADFEQQLARLQEIVDALEGGDLPLEESVA 35 (80)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 3479999999999999988888888887653
No 145
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=28.06 E-value=1.7e+02 Score=34.04 Aligned_cols=116 Identities=18% Similarity=0.293 Sum_probs=80.5
Q ss_pred cchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecc-cCC------
Q 005900 171 ASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV-RDD------ 243 (671)
Q Consensus 171 p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv-~Dd------ 243 (671)
..+-+++.+.|.+.= -+.||-|+|+.+.+|+++.+.. ++.-...++.-+++.|.-...+.+. -+|
T Consensus 24 ~~~r~l~~a~G~~~~-~~~kP~IgI~~s~~d~~p~h~h-------l~~l~~~vk~~i~~aGg~p~ef~t~~v~DGiamG~ 95 (575)
T COG0129 24 AGHRSLLRATGLTDE-DFGKPIIGIANSYNDMVPGHQH-------LKDLAQLVKEGIREAGGVPVEFGTIAVCDGIAMGH 95 (575)
T ss_pred cchHHHHHHhCCChH-HcCCCeEEEEeccccCcCchhh-------HHHHHHHHHHHHHHcCCceeEeCCCCccCccccCC
Confidence 666788888998776 5589999999999999865432 3444566777788888665555532 344
Q ss_pred ---------HHHHHHHhhhhhc-ccccEEEecCCcccCCccchhh-hh---cccc--eEEEecccccCCCcc
Q 005900 244 ---------EEELEKTLDNAFS-AGIDILLTSGGVSMGDKDFVKP-LL---QKKG--TIYFNKVCMKPGKPL 299 (671)
Q Consensus 244 ---------~~~i~~~l~~a~~-~~~DiVIttGG~s~G~~D~~~~-~l---~~~g--~i~f~~v~~~PGkp~ 299 (671)
.+.|...++..++ ..+|-+|..||- |-+-. .| .++. .++..+=.|.||++-
T Consensus 96 ~GM~~SL~SRelIAds~e~~~~~~~~Da~V~i~~C-----DKi~PG~lmaa~r~niPaIfv~gGpM~~G~~~ 162 (575)
T COG0129 96 DGMPYSLPSRELIADSVEEVLSAHPFDGVVLIGGC-----DKITPGMLMAAARLNIPAIFVSGGPMLAGKVN 162 (575)
T ss_pred CCcccccccHHHHHHHHHHHHhccCcceEEEecCC-----CCccHHHHHHHHhcCCCEEEecCCcCCCCccC
Confidence 6778888887765 247999998876 65443 22 2222 677778888888754
No 146
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=27.99 E-value=98 Score=29.39 Aligned_cols=51 Identities=6% Similarity=0.080 Sum_probs=33.7
Q ss_pred HHHHHHHHhccceeeeecc-cCCHHHHHHHhhhhhc-ccccEEEecCCcccCC
Q 005900 222 MLLAAAMQQHCKLIDLGIV-RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 272 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv-~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~ 272 (671)
.|.+.|++.|++|.+++.- +.|...+...+.+++. ..+|.=|..-|||+|-
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~ 69 (142)
T PRK08621 17 VVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGS 69 (142)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhh
Confidence 5677888899999999972 2244556666665552 2367666666777663
No 147
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=27.56 E-value=48 Score=31.50 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=45.7
Q ss_pred HHHHHHhcc--ceeeeecccCCHH---HHHHHhhhhhcccccEEEecCCcccCC---ccchhhhhcccceEEEecccccC
Q 005900 224 LAAAMQQHC--KLIDLGIVRDDEE---ELEKTLDNAFSAGIDILLTSGGVSMGD---KDFVKPLLQKKGTIYFNKVCMKP 295 (671)
Q Consensus 224 ~a~l~~~G~--~v~~~~iv~Dd~~---~i~~~l~~a~~~~~DiVIttGG~s~G~---~D~~~~~l~~~g~i~f~~v~~~P 295 (671)
...|++.|+ +.+..-.||--.| .++..+++ .++|.||+-|=+=.|+ +||+.....+- +-.++++=
T Consensus 26 ~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~---~~~Davi~lG~VI~G~T~H~~~v~~~v~~g----l~~lsl~~ 98 (144)
T PF00885_consen 26 LEELKRHGVAEENIEVIRVPGAFELPLAAKRLAES---GRYDAVIALGCVIRGETDHFEYVANAVSRG----LMDLSLEY 98 (144)
T ss_dssp HHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHC---STESEEEEEEEEE--SSTHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcc---cCccEEEEeccccCCCchHHHHHHHHHHHH----HHHHhccC
Confidence 445566776 2334445665443 34444433 2599999999665555 56666655542 44677788
Q ss_pred CCcceeeEec
Q 005900 296 GKPLTFAEIN 305 (671)
Q Consensus 296 Gkp~~~a~~~ 305 (671)
++|+.||.+.
T Consensus 99 ~~PV~~gvlt 108 (144)
T PF00885_consen 99 GIPVIFGVLT 108 (144)
T ss_dssp TSEEEEEEEE
T ss_pred CccEEEEecC
Confidence 8999999885
No 148
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=27.52 E-value=24 Score=33.80 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=55.5
Q ss_pred CceEEEeccc----cCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccc-
Q 005900 509 GAKVVATDVV----PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTP- 583 (671)
Q Consensus 509 G~~v~~~~iv----~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~p- 583 (671)
|+++..++.. +.|.-.+...+.......++|+.|+..|||.|.- +..-+.||+..++-. .|
T Consensus 26 g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~~---------iaANKv~GiraAl~~-----D~~ 91 (151)
T COG0698 26 GYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIGMS---------IAANKVPGIRAALVS-----DPT 91 (151)
T ss_pred CCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChhHH---------HHhhccCCeEEEEec-----CHH
Confidence 9999986544 3455556555555543347999999999998742 223345666543221 12
Q ss_pred hhhhcccccccccceEEEeCCCChhhHHHHHHHHHH
Q 005900 584 FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLP 619 (671)
Q Consensus 584 g~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp 619 (671)
.+. .+-..|+.-+++|++--.....+...+--
T Consensus 92 sA~----~ar~hNnaNvl~~G~riig~~lA~~ivd~ 123 (151)
T COG0698 92 SAK----LAREHNNANVLCLGARIIGPELAEDIVDA 123 (151)
T ss_pred HHH----HHHhcCCCcEEEechhhccHHHHHHHHHH
Confidence 122 22236888999999765555555544433
No 149
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=27.35 E-value=1.4e+02 Score=30.90 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=36.8
Q ss_pred ecceEEEeecCCccccccccccccccccc-chhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRD-SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~d-sN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
.||.|+|.+...+.. +...+ .+..++.+. .+.|+.++.+....++.+.+.+.+ + .+|-||.|||
T Consensus 6 ~~P~Igi~~~~~~~~---------~~~~~~~~~~y~~~i-~~aGg~pv~lp~~~~~~~~~~~~l----~-~~DGlil~GG 70 (254)
T PRK11366 6 NNPVIGVVMCRNRLK---------GHATQTLQEKYLNAI-IHAGGLPIALPHALAEPSLLEQLL----P-KLDGIYLPGS 70 (254)
T ss_pred CCCEEEEeCCCcccC---------cchHHHHHHHHHHHH-HHCCCEEEEecCCCCCHHHHHHHH----H-hCCEEEeCCC
Confidence 689999976322211 11111 334455544 456776665554334444444433 3 3899999997
Q ss_pred -cccC
Q 005900 268 -VSMG 271 (671)
Q Consensus 268 -~s~G 271 (671)
.++.
T Consensus 71 ~~dv~ 75 (254)
T PRK11366 71 PSNVQ 75 (254)
T ss_pred CCCcC
Confidence 5563
No 150
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=27.01 E-value=71 Score=35.13 Aligned_cols=57 Identities=12% Similarity=0.245 Sum_probs=37.4
Q ss_pred ccccchhHHHHHHHHHhccceeeeecccCC-HHHHHHHhhhhhc--ccccEEEecCCcccC
Q 005900 214 QIRDSNRAMLLAAAMQQHCKLIDLGIVRDD-EEELEKTLDNAFS--AGIDILLTSGGVSMG 271 (671)
Q Consensus 214 ~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd-~~~i~~~l~~a~~--~~~DiVIttGG~s~G 271 (671)
...++..|.+..+|.+. +++.+...+-.. -+...+.|+++++ .+.||++..|.+...
T Consensus 65 SlL~a~~P~~~~ll~~~-i~l~yH~tl~aa~G~~a~~~l~~~~~~~~~~~ILvVEGaIp~~ 124 (371)
T PRK10468 65 SLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLK 124 (371)
T ss_pred HHhccCCCCHHHHHhcC-ceeeeccHHHHHhHHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 45677788888888877 666666655422 2344455555543 247999999999665
No 151
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=26.84 E-value=23 Score=33.59 Aligned_cols=96 Identities=9% Similarity=0.075 Sum_probs=61.2
Q ss_pred CceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchhhhc
Q 005900 509 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLS 588 (671)
Q Consensus 509 G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~~ls 588 (671)
|++|..++.-+.|...+...+.+.....++|.=|..-|||.|-. +..-+.+|+.-..-.. ...+.+
T Consensus 26 g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~s---------iaANKv~GIRaA~~~d----~~~A~~- 91 (141)
T PRK12613 26 GYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPF---------MVATKLKGMVAAEVSD----ERSAYM- 91 (141)
T ss_pred CCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHh---------hhhhcCCCeEEEEECC----HHHHHH-
Confidence 89999998766677778888877775567888888888886631 1222345554321111 111222
Q ss_pred ccccccccceEEEeCCCChhhHHHHHHHHHHHH
Q 005900 589 RSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 589 r~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
+=..|+.-|++|++--.....+.+.+--+|
T Consensus 92 ---ar~hNnaNVl~lG~r~ig~~~a~~iv~~fL 121 (141)
T PRK12613 92 ---TRGHNNARMITMGAEIVGPELAKNIAKGFV 121 (141)
T ss_pred ---HHHHcCCcEEEECccccCHHHHHHHHHHHH
Confidence 123688999999998887777776654444
No 152
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.99 E-value=69 Score=31.91 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=40.8
Q ss_pred cccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccC-Cccchhhhhccc
Q 005900 215 IRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG-DKDFVKPLLQKK 283 (671)
Q Consensus 215 i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G-~~D~~~~~l~~~ 283 (671)
-|||..+.|..++++.|.++. ++.+|...+. .++ ++ +.|.||.+=|-|.- +.....++++++
T Consensus 9 NyDSFtyNLv~yl~~lg~~v~---V~rnd~~~~~-~~~-~~--~pd~iviSPGPG~P~d~G~~~~~i~~~ 71 (191)
T COG0512 9 NYDSFTYNLVQYLRELGAEVT---VVRNDDISLE-LIE-AL--KPDAIVISPGPGTPKDAGISLELIRRF 71 (191)
T ss_pred CccchHHHHHHHHHHcCCceE---EEECCccCHH-HHh-hc--CCCEEEEcCCCCChHHcchHHHHHHHh
Confidence 489999999999999997654 3344422222 233 22 47999998887665 334466666664
No 153
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.89 E-value=57 Score=27.50 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHhhhcCCCcchhHHHHHh
Q 005900 17 ISAEEALQKVLSVAQRLPPVTVPLYEALG 45 (671)
Q Consensus 17 is~~eA~~~i~~~~~~~~~e~v~l~~A~G 45 (671)
.+|++|++.+.+.+..+....+||.+++-
T Consensus 4 ~~fEeal~~LE~IV~~LE~g~l~Leesl~ 32 (75)
T PRK14066 4 EKFETALKKLEEVVKKLEGGELSLDDSLK 32 (75)
T ss_pred ccHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 57999999999999888888888887654
No 154
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=25.79 E-value=73 Score=34.79 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccceeeeecccC--CHHHHHHHhhhhhcccccEEEecCCcccCCccchh
Q 005900 221 AMLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVK 277 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~ 277 (671)
..+...|++.|.++..+.-+.. +.+.+.++++.+.+.++|.||-.||-|+ -|..+
T Consensus 39 ~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~--~D~aK 95 (366)
T PF00465_consen 39 DRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSV--MDAAK 95 (366)
T ss_dssp HHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHH--HHHHH
T ss_pred HHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--CcHHH
Confidence 4566677888988877764433 3467888888887778999999999766 35444
No 155
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=25.60 E-value=71 Score=35.20 Aligned_cols=55 Identities=16% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHHHHhccceeeeecccCC--HHHHHHHhhhhhcccccEEEecCCcccCCccchh
Q 005900 221 AMLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVK 277 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~ 277 (671)
..+.+.|++.|.++..+.-+..+ .+.+.+.++.+.+.++|.||--||=|+- |..+
T Consensus 47 ~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSvi--D~aK 103 (379)
T TIGR02638 47 DKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPI--DTAK 103 (379)
T ss_pred HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH--HHHH
Confidence 35677788888877666433323 4667777777766679999988886653 4443
No 156
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.25 E-value=1.1e+02 Score=28.22 Aligned_cols=68 Identities=26% Similarity=0.382 Sum_probs=49.5
Q ss_pred cccccchhhhhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeee-----ccc
Q 005900 167 ERIGASEIGLLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLG-----IVR 241 (671)
Q Consensus 167 ~~l~p~~i~lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~-----iv~ 241 (671)
-.|++.++.-++..|++.|-..|+ -|.| |+++ +...+++.+++.|....+.. |-+
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRP-------DgEe---~~QP----------~~~~i~~aa~~aGl~y~~iPV~~~~iT~ 73 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRP-------DGEE---PGQP----------GFAAIAAAAEAAGLTYTHIPVTGGGITE 73 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCC-------CCCC---CCCC----------ChHHHHHHHHhcCCceEEeecCCCCCCH
Confidence 358899999999999999888775 4444 4443 34678899999997654444 445
Q ss_pred CCHHHHHHHhhhh
Q 005900 242 DDEEELEKTLDNA 254 (671)
Q Consensus 242 Dd~~~i~~~l~~a 254 (671)
||-+.++++|.++
T Consensus 74 ~dV~~f~~Al~ea 86 (130)
T COG3453 74 ADVEAFQRALDEA 86 (130)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777777775
No 157
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=25.23 E-value=83 Score=34.69 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHHHHHhccceeeeecccCC--HHHHHHHhhhhhcccccEEEecCCcccCCccchh
Q 005900 221 AMLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVK 277 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~ 277 (671)
..+.+.|++.|.++..+.-+.-+ .+.+.+.++.+.+.++|+||--||=|+- |..+
T Consensus 48 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i--D~aK 104 (382)
T PRK10624 48 AKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQ--DTCK 104 (382)
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH--HHHH
Confidence 35778888888877655433323 4667777777766679999977775542 5554
No 158
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=25.19 E-value=1.4e+02 Score=31.32 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=42.0
Q ss_pred cceEEEeecCCcccccccccccccccccc-hhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDS-NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~ds-N~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
+.||+|+..|+- + ...+ +- +...+...|++.|+++..+..-.+. .+.++. .+.|+|+..-+.
T Consensus 4 ~~~v~~~~g~~~---~------~~~~-~~~s~~~i~~al~~~g~~v~~i~~~~~~----~~~~~~---~~~D~v~~~~~g 66 (304)
T PRK01372 4 FGKVAVLMGGTS---A------EREV-SLNSGAAVLAALREAGYDAHPIDPGEDI----AAQLKE---LGFDRVFNALHG 66 (304)
T ss_pred CcEEEEEeCCCC---C------CceE-eHHhHHHHHHHHHHCCCEEEEEecCcch----HHHhcc---CCCCEEEEecCC
Confidence 458998886631 1 1111 11 3367788889999998766433322 222322 248998865322
Q ss_pred ccCCccchhhhhcccc
Q 005900 269 SMGDKDFVKPLLQKKG 284 (671)
Q Consensus 269 s~G~~D~~~~~l~~~g 284 (671)
..+...++...++.+|
T Consensus 67 ~~~~~~~~~~~le~~g 82 (304)
T PRK01372 67 RGGEDGTIQGLLELLG 82 (304)
T ss_pred CCCCccHHHHHHHHcC
Confidence 2334445555555443
No 159
>PRK03094 hypothetical protein; Provisional
Probab=24.78 E-value=75 Score=27.15 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecC
Q 005900 220 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
-.-+...|++.|++|+.+.--.| ++ ++|.+|+||
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~~~------------~~-~~Da~VitG 43 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSEQD------------AQ-GCDCCVVTG 43 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcccc------------cC-CcCEEEEeC
Confidence 34588999999999987753122 23 699999999
No 160
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.75 E-value=66 Score=27.50 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=25.7
Q ss_pred HHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCC
Q 005900 221 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 267 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG 267 (671)
.-+...|++.|++|+.+.--. + ++ ++|.+|+||-
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~-----------~-~~-~~daiVvtG~ 44 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQ-----------D-LQ-NVDAIVVTGQ 44 (80)
T ss_pred hHHHHHHHHCCCEEEecCCcc-----------c-cC-CcCEEEEECC
Confidence 467899999999998887221 1 23 6999999984
No 161
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.98 E-value=97 Score=32.84 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhccceeeeecccCCHHHHH---------HHhhhhhcccccEEEecCCcccCCccchhhhhcccc-eEEEe
Q 005900 220 RAMLLAAAMQQHCKLIDLGIVRDDEEELE---------KTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFN 289 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~---------~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g-~i~f~ 289 (671)
+..++..|+.+|+++..+..-++..+.+. +.+.+.+. ++|+||.|=...+ +..+.++.+. ..++-
T Consensus 163 G~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~-~aDiVint~P~~i----i~~~~l~~~k~~aliI 237 (287)
T TIGR02853 163 GMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVA-EIDIVINTIPALV----LTADVLSKLPKHAVII 237 (287)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhc-cCCEEEECCChHH----hCHHHHhcCCCCeEEE
Confidence 56788888888987765544333222211 12344555 5999997643332 1233445444 45677
Q ss_pred cccccCCC
Q 005900 290 KVCMKPGK 297 (671)
Q Consensus 290 ~v~~~PGk 297 (671)
.++-+||.
T Consensus 238 Dlas~Pg~ 245 (287)
T TIGR02853 238 DLASKPGG 245 (287)
T ss_pred EeCcCCCC
Confidence 78888886
No 162
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=23.97 E-value=1.4e+02 Score=29.23 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=31.0
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
.++|...|...|++.|+++..... ..+++.+.+ . +.|-||.+||-+.
T Consensus 7 g~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~~~~-----~--~~~glii~Gg~~~ 53 (188)
T TIGR00888 7 GSQYTQLIARRLRELGVYSELVPN-TTPLEEIRE-----K--NPKGIILSGGPSS 53 (188)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeC-CCCHHHHhh-----c--CCCEEEECCCCCC
Confidence 467899999999999987754332 223444422 1 2568888888543
No 163
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=23.84 E-value=27 Score=33.17 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=64.3
Q ss_pred CCCCCceEEEecCCccccCCceEEEecccc---CChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhc
Q 005900 490 DRSGPRAVSVVNSSSEKLGGAKVVATDVVP---DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERE 566 (671)
Q Consensus 490 D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~---Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~ 566 (671)
|..|.-+.+.|.+++++. |++|..++.-. -|.-.+...+.+.+...++|.-|+.-|||.|- .= ..-+
T Consensus 7 DhaG~~lK~~l~~~L~~~-g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~--------si-aANK 76 (143)
T TIGR01120 7 DHAGFILKEEIKAFLVER-GVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGM--------SI-AANK 76 (143)
T ss_pred CcchHHHHHHHHHHHHHC-CCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHH--------HH-HHhc
Confidence 334444444443333333 89999988632 34555666666665446799999999999662 22 2223
Q ss_pred CCCeeeeeecccccccch-hhhcccccccccceEEEeCCCChhhHHHHHHHHHHHH
Q 005900 567 TPGLLYVMMQESLKVTPF-AMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 567 l~gi~e~~~~~~~~~~pg-~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
.||+.-..- ..+. +. .+-..|+.-|++|++--.+...+.+.+--+|
T Consensus 77 ~~GIraa~~-----~d~~~A~----~ar~hNnaNvl~lG~r~~g~~~a~~iv~~fl 123 (143)
T TIGR01120 77 FAGIRAALC-----SEPYMAQ----MSRLHNDANVLCLGERVVGLELAKSIVDAWL 123 (143)
T ss_pred CCCeEEEEE-----CCHHHHH----HHHHhcCCcEEEECcceeCHHHHHHHHHHHH
Confidence 566544321 1111 11 2234688999999987766666555444443
No 164
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=23.76 E-value=1.2e+02 Score=29.83 Aligned_cols=52 Identities=27% Similarity=0.258 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCC
Q 005900 215 IRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGD 272 (671)
Q Consensus 215 i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~ 272 (671)
.+|+-...+...|++.|+.+..+.... +.+.+ ...++ .+|.||.+||-+..+
T Consensus 16 ~~~~~~~~~~~~l~~~G~~~~iv~~~~-~~~~~----~~~l~-~~dglvl~GG~~~~~ 67 (189)
T cd01745 16 RRDYLNQYYVDAVRKAGGLPVLLPPVD-DEEDL----EQYLE-LLDGLLLTGGGDVDP 67 (189)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEeCCCC-ChHHH----HHHHh-hCCEEEECCCCCCCh
Confidence 378888889999999998776544332 22333 33333 489999999976543
No 165
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=23.69 E-value=71 Score=30.27 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=23.2
Q ss_pred CceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCC
Q 005900 509 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 547 (671)
Q Consensus 509 G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGt 547 (671)
|+++..+.+...+.+.+.+.|+ ++|+|+.+||-
T Consensus 13 g~~v~~l~~~~~~~~~~~~~i~------~ad~I~~~GG~ 45 (154)
T PF03575_consen 13 GFEVDQLDLSDRNDADILEAIR------EADAIFLGGGD 45 (154)
T ss_dssp T-EEEECCCTSCGHHHHHHHHH------HSSEEEE--S-
T ss_pred CCEEEEEeccCCChHHHHHHHH------hCCEEEECCCC
Confidence 9998888888877776666665 47999999994
No 166
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=23.57 E-value=93 Score=34.21 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=35.8
Q ss_pred cchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecC
Q 005900 217 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 217 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
.+| -+++.++++.|++++....+|=+..++.+.|++..+...|+|+.|-
T Consensus 149 e~N-ri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~~~Pd~V~stl 197 (363)
T PF13433_consen 149 ESN-RIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKAAKPDFVFSTL 197 (363)
T ss_dssp HHH-HHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHHHT-SEEEEE-
T ss_pred HHH-HHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHhhCCCEEEEeC
Confidence 345 4788999999999999999988888888888887665689999664
No 167
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=23.18 E-value=65 Score=36.20 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCc
Q 005900 220 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDK 273 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~ 273 (671)
...|..+|.+.|+..-.+.+++.+...+.+.|..- .+.|.|+-||++++|..
T Consensus 160 ~~~l~~~l~~aglP~g~v~~v~~~~~~~~~~l~~~--~~vd~V~ftGs~~~g~~ 211 (451)
T cd07103 160 ALALAELAEEAGLPAGVLNVVTGSPAEIGEALCAS--PRVRKISFTGSTAVGKL 211 (451)
T ss_pred HHHHHHHHHHcCCCcccEEEEecCchhHHHHHhcC--CCCCEEEEECCHHHHHH
Confidence 56788899999987766777776554455555432 24799999999887753
No 168
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=23.01 E-value=79 Score=34.75 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=39.0
Q ss_pred ccccchhHHHHHHHHHhccceeeeecccCCH-HHHHHHhhhhhc--ccccEEEecCCcccCC
Q 005900 214 QIRDSNRAMLLAAAMQQHCKLIDLGIVRDDE-EELEKTLDNAFS--AGIDILLTSGGVSMGD 272 (671)
Q Consensus 214 ~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~-~~i~~~l~~a~~--~~~DiVIttGG~s~G~ 272 (671)
.+.|+..+.+..+|.++ +++.+...+-+.. +...+.++++++ .+.||+|.-|++...+
T Consensus 67 SlL~s~~P~~~~~ll~~-isl~yhptlmaa~G~~ae~~l~~~~~~~~g~~ILvVEGaIp~~~ 127 (365)
T TIGR00391 67 SLLRSAHPTVENLILET-ISLEYHETLMAAFGHQAEENKHDAIEKYKGQYILVVEGSIPLGD 127 (365)
T ss_pred HHhccCCCCHHHHHhcC-ceEEechHhHHhhHHHHHHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 45677888888888776 6677776665543 334445555443 2479999999996654
No 169
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=22.88 E-value=1.1e+02 Score=34.06 Aligned_cols=85 Identities=21% Similarity=0.231 Sum_probs=52.1
Q ss_pred ccccchhh---hhhhcceeEEEEeecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCH
Q 005900 168 RIGASEIG---LLATAGIMMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDE 244 (671)
Q Consensus 168 ~l~p~~i~---lLas~Gi~~v~V~~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~ 244 (671)
.++|.-+| .||-+...-+--+++.+|+||+|=+= ..| .--.|..+.+-+|+.+ .+-+++
T Consensus 208 LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY--RIG------------A~EQLk~Ya~im~vp~----~vv~~~ 269 (407)
T COG1419 208 LVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY--RIG------------AVEQLKTYADIMGVPL----EVVYSP 269 (407)
T ss_pred EECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc--hhh------------HHHHHHHHHHHhCCce----EEecCH
Confidence 45666555 34444433335678999999998431 111 1123444445556655 567899
Q ss_pred HHHHHHhhhhhcccccEEE-ecCCcccCC
Q 005900 245 EELEKTLDNAFSAGIDILL-TSGGVSMGD 272 (671)
Q Consensus 245 ~~i~~~l~~a~~~~~DiVI-ttGG~s~G~ 272 (671)
.++.+++.... +||+|+ =|-|-|.-+
T Consensus 270 ~el~~ai~~l~--~~d~ILVDTaGrs~~D 296 (407)
T COG1419 270 KELAEAIEALR--DCDVILVDTAGRSQYD 296 (407)
T ss_pred HHHHHHHHHhh--cCCEEEEeCCCCCccC
Confidence 99999999875 489877 355555433
No 170
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=22.79 E-value=1.7e+02 Score=25.09 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=35.0
Q ss_pred eeeecccCCCceEEEEeeceEEEEeeCCCCCCCCcceEEecccccccccccccceEEEEEeecCccce--eccc---ccc
Q 005900 82 VITESRAGNDGIGVIVTSGTVAYVTTGGPIPDGADAVVQVEDTDEVNHTAAESKRVKILVQTNKGVDI--RPVG---YDI 156 (671)
Q Consensus 82 v~g~~~aG~~~~~~~l~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~~~~~~~i~i~~~~~~g~ni--r~~G---ed~ 156 (671)
+.|.+..| .++.|+.++++ |.+..+.|. ..+..+. .+ ....+|+++ .-.| +++
T Consensus 22 v~G~v~~G------~i~~gd~v~i~-----P~~~~~~V~--sI~~~~~------~~---~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 22 PVGRVETG------VLKPGMVVTFA-----PAGVTGEVK--SVEMHHE------PL---EEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred EEEEEecc------eeecCCEEEEC-----CCCcEEEEE--EEEECCc------Cc---CEECCCCEEEEEECCCCHHHc
Confidence 45666665 47788888887 555443332 2222111 11 234567663 3334 678
Q ss_pred ccceEEeccC
Q 005900 157 EKDAIILKSG 166 (671)
Q Consensus 157 ~~G~~ll~~G 166 (671)
++|++|.+..
T Consensus 80 ~~G~vl~~~~ 89 (91)
T cd03693 80 KRGDVAGDSK 89 (91)
T ss_pred CCcCEEccCC
Confidence 8888887653
No 171
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=22.75 E-value=1e+02 Score=33.59 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=37.5
Q ss_pred HHHHHHHHHhccceeeee-ccc-CCHHHHHHHhhhhhcccccEEEecCCcccCCccchh
Q 005900 221 AMLLAAAMQQHCKLIDLG-IVR-DDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVK 277 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~-iv~-Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~ 277 (671)
.-+.+.|++.|.++..+. +.+ -+.+.+.+.++.+.+.++|+||-.||=|+- |..+
T Consensus 44 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSvi--D~aK 100 (357)
T cd08181 44 DDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPL--DAAK 100 (357)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH--HHHH
Confidence 346777888888776554 332 234557777777776679999999887663 5544
No 172
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=22.62 E-value=94 Score=33.74 Aligned_cols=57 Identities=23% Similarity=0.165 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhccceeeeecccC-CHHHHHHHhhhhhcccccEEEecCCcccCCccchhh
Q 005900 220 RAMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKP 278 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~D-d~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~ 278 (671)
...+...|++.|.++.....-++ +.+.+.+.++.+.+.++|.||--||=|+- |..+-
T Consensus 38 ~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~--D~aK~ 95 (349)
T cd08550 38 RPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTL--DTAKA 95 (349)
T ss_pred HHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHH--HHHHH
Confidence 45677778877765433222223 45667777777766679999988886553 55443
No 173
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=22.49 E-value=1.8e+02 Score=27.22 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=45.4
Q ss_pred ccchhHHHHHHHHH-hccceeeeec--ccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhcccc
Q 005900 216 RDSNRAMLLAAAMQ-QHCKLIDLGI--VRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 284 (671)
Q Consensus 216 ~dsN~~~L~a~l~~-~G~~v~~~~i--v~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~~~g 284 (671)
+|--+..+..+-+. .|+++.++.+ ++|-+-+-++.|++ ++||+||+-|=+|....|...-...++|
T Consensus 14 vdMg~vai~~lk~~~~~~~i~R~TVPGIKdlpvaakrLiee---eGCd~Vi~lG~~G~t~~Dk~~~~~aS~G 82 (154)
T COG1731 14 VDMGSVAIDELKKLLPGIKIKRYTVPGIKDLPVAAKRLIEE---EGCDIVIALGWVGPTEKDKYSYLAASIG 82 (154)
T ss_pred ecchHHHHHHHHhhCCCCceEEeeCCCcccChHHHHHHHHh---cCCcEEEEccCcCcchhhHHHHHHHhhH
Confidence 34444455444333 3567666543 46777777777664 4899999999999999998877666665
No 174
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=22.43 E-value=1.3e+02 Score=29.62 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc-ccCC
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV-SMGD 272 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~-s~G~ 272 (671)
+||-++.+..+|++.|+++..+..-..+.+. +. .+ +.|.||.+||- ++-+
T Consensus 8 ~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~----~~-~~--~~~~iilsgGp~~~~~ 58 (193)
T PRK08857 8 YDSFTYNLYQYFCELGAQVKVVRNDEIDIDG----IE-AL--NPTHLVISPGPCTPNE 58 (193)
T ss_pred CCCcHHHHHHHHHHCCCcEEEEECCCCCHHH----Hh-hC--CCCEEEEeCCCCChHH
Confidence 6899999999999999887544332122222 22 22 36889999875 4443
No 175
>PRK00758 GMP synthase subunit A; Validated
Probab=22.40 E-value=1.7e+02 Score=28.43 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=28.4
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccc-cEEEecCCcc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGI-DILLTSGGVS 269 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~-DiVIttGG~s 269 (671)
.++|..++..+|++.|.++..+..- .+++ .+ + ++ |.||.+||-+
T Consensus 8 ~~~~~~~i~~~l~~~g~~~~~~~~~-~~~~----~l----~-~~~dgivi~Gg~~ 52 (184)
T PRK00758 8 GGQYNHLIHRTLRYLGVDAKIIPNT-TPVE----EI----K-AFEDGLILSGGPD 52 (184)
T ss_pred CCchHHHHHHHHHHcCCcEEEEECC-CCHH----HH----h-hcCCEEEECCCCC
Confidence 3568889999999999876433311 1122 12 2 25 8999999863
No 176
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=22.39 E-value=32 Score=32.99 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=58.3
Q ss_pred CceEEEecc---ccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccc-h
Q 005900 509 GAKVVATDV---VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTP-F 584 (671)
Q Consensus 509 G~~v~~~~i---v~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~p-g 584 (671)
|++|..++. -+.|...+...+.+......+|.-|..-|||.|- . +..-+.+|+....- ..+ -
T Consensus 30 g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtGiG~--------s-iaANK~~GIRAa~~-----~d~~~ 95 (151)
T PTZ00215 30 EYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGI--------S-IAANKVKGIRCALC-----HDHYT 95 (151)
T ss_pred CCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcHHH--------H-HHHhcCCCeEEEEE-----CCHHH
Confidence 899999885 2345666777777766546789888888999652 1 22223455543211 111 1
Q ss_pred hhhcccccccccceEEEeCCCChhhHHHHHHHHHHHH
Q 005900 585 AMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 621 (671)
Q Consensus 585 ~~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ilp~L 621 (671)
+. .+-..|+.-|++|++--.+...+.+.+--+|
T Consensus 96 A~----~ar~hNnaNVL~lGar~ig~~~a~~iv~~fL 128 (151)
T PTZ00215 96 AR----MSRQHNNANVLAFGGRTTGIEVAKEIIDTFL 128 (151)
T ss_pred HH----HHHHhcCCcEEEECccccCHHHHHHHHHHHH
Confidence 12 2223688999999998777666665544443
No 177
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=22.34 E-value=1.4e+02 Score=29.19 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=51.0
Q ss_pred EEEEeecccccCCCCCCCCCce---EEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCC
Q 005900 475 AILTVSDTVASGAGPDRSGPRA---VSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 551 (671)
Q Consensus 475 ~IIt~GdEl~~G~~~D~n~~~l---~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~ 551 (671)
.|+..||.++.|.-.+....|. .+.+.. .+.+...++-.|.-..+.+.+...+...+.|+||...|+==..
T Consensus 12 ~iv~~GDSit~G~~~~~~~~w~~~l~~~l~~------~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~ 85 (191)
T PRK10528 12 TLLILGDSLSAGYRMPASAAWPALLNDKWQS------KTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGL 85 (191)
T ss_pred EEEEEeCchhhcCCCCccCchHHHHHHHHhh------CCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCc
Confidence 4788999999885443332222 122222 2457777887887777777777665334789999988887554
Q ss_pred CCCChHHHHH
Q 005900 552 RDVTPEATKE 561 (671)
Q Consensus 552 ~D~T~eal~~ 561 (671)
..++++.+.+
T Consensus 86 ~~~~~~~~~~ 95 (191)
T PRK10528 86 RGFPPQQTEQ 95 (191)
T ss_pred cCCCHHHHHH
Confidence 5555544443
No 178
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.28 E-value=39 Score=31.55 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=46.0
Q ss_pred EEEEEEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCC
Q 005900 471 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 550 (671)
Q Consensus 471 ~~~v~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~ 550 (671)
++|+-+-++|. ..+|.-..+++.+|+.. |++|.+.+.--. ++.+.++..+ +++|+|..|+=.+ +
T Consensus 2 ~~~v~~a~~g~-----D~Hd~g~~iv~~~l~~~-----GfeVi~lg~~~s-~e~~v~aa~e----~~adii~iSsl~~-~ 65 (132)
T TIGR00640 2 RPRILVAKMGQ-----DGHDRGAKVIATAYADL-----GFDVDVGPLFQT-PEEIARQAVE----ADVHVVGVSSLAG-G 65 (132)
T ss_pred CCEEEEEeeCC-----CccHHHHHHHHHHHHhC-----CcEEEECCCCCC-HHHHHHHHHH----cCCCEEEEcCchh-h
Confidence 45555555554 35565567777888888 999999887533 3344333332 5799999985443 2
Q ss_pred CCCCChHHHHHh
Q 005900 551 PRDVTPEATKEL 562 (671)
Q Consensus 551 ~~D~T~eal~~~ 562 (671)
.-+..++.+..+
T Consensus 66 ~~~~~~~~~~~L 77 (132)
T TIGR00640 66 HLTLVPALRKEL 77 (132)
T ss_pred hHHHHHHHHHHH
Confidence 233344444444
No 179
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=22.28 E-value=1.5e+02 Score=29.84 Aligned_cols=48 Identities=17% Similarity=-0.085 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcc
Q 005900 217 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 217 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
|+-...+..+|++.|+++.....-.++...+ ...++ ++|-||.+||-+
T Consensus 10 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~----~~~~~-~~dgliisGGp~ 57 (214)
T PRK07765 10 DSFVFNLVQYLGQLGVEAEVWRNDDPRLADE----AAVAA-QFDGVLLSPGPG 57 (214)
T ss_pred CcHHHHHHHHHHHcCCcEEEEECCCcCHHHH----HHhhc-CCCEEEECCCCC
Confidence 3445578889999999887654433222222 22233 489999999864
No 180
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.27 E-value=1.5e+02 Score=29.82 Aligned_cols=63 Identities=19% Similarity=0.075 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCcccCCccchhhhhc
Q 005900 219 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQ 281 (671)
Q Consensus 219 N~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~~l~ 281 (671)
-..-+.+.++++|+++........|.+...+.+++++++++|.||++.-.+..-.+++.++.+
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~ 78 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKA 78 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhh
Confidence 445677888889999877655566678888999999888899999776555444455544433
No 181
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=22.13 E-value=1.2e+02 Score=36.56 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=42.4
Q ss_pred ecceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 189 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 189 ~~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
++|||.+...|.-. .|.-.-++..+|+..|++|...+.. .+++.+.++.. +.++|+|+.|+=.
T Consensus 581 ~rpkV~LatlG~d~-------------H~~ra~fv~~~l~~~GfeV~~~~~~-~s~e~~v~aa~---~~~a~ivvlcs~d 643 (714)
T PRK09426 581 RRPRILVAKMGQDG-------------HDRGAKVIATAFADLGFDVDIGPLF-QTPEEAARQAV---ENDVHVVGVSSLA 643 (714)
T ss_pred CCceEEEEecCCcc-------------hhHhHHHHHHHHHhCCeeEecCCCC-CCHHHHHHHHH---HcCCCEEEEeccc
Confidence 68999999998632 2333568899999999999544333 33444433333 3479999998743
No 182
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=21.86 E-value=31 Score=33.76 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=58.3
Q ss_pred CceEEEeccc---cCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchh
Q 005900 509 GAKVVATDVV---PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFA 585 (671)
Q Consensus 509 G~~v~~~~iv---~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~ 585 (671)
|++|..++.- +.|...+...+.+++....+|.-|..-|||.|- .+..-+.||+....-.. .--+
T Consensus 26 G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~---------siaANKv~GIRAAl~~d----~~sA 92 (171)
T TIGR01119 26 GYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGI---------NNAVNKVPGVRSALVRD----MTSA 92 (171)
T ss_pred CCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHH---------HHHHhcCCCeEEEEeCC----HHHH
Confidence 9999998862 345666777777766546789999999999662 22223456665432211 0111
Q ss_pred hhcccccccccceEEEeCCCChhhHHHHHHHH
Q 005900 586 MLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 617 (671)
Q Consensus 586 ~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~i 617 (671)
. .+-..|+.-|++|++--.....+.+.+
T Consensus 93 ~----~ar~hNnaNVL~lGarvig~e~a~~Iv 120 (171)
T TIGR01119 93 L----YAKEELNANVIGFGGAIIGKLLMFDII 120 (171)
T ss_pred H----HHHHhcCCcEEEECccccCHHHHHHHH
Confidence 2 223468899999999877666666554
No 183
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=21.81 E-value=98 Score=26.25 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=40.8
Q ss_pred EEEeecCC---cccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecC
Q 005900 193 IAVLSTGD---ELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 266 (671)
Q Consensus 193 V~iistGd---Elv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttG 266 (671)
|+|++.|+ ++.+ -...|.+.|++.|+.+. +.+....+.+.|+.|...++-++|+-|
T Consensus 2 v~Ii~~~~~~~~~~~--------------~a~~l~~~L~~~gi~v~----~d~~~~~~~k~~~~a~~~g~p~~iiiG 60 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIE--------------YAQELANKLRKAGIRVE----LDDSDKSLGKQIKYADKLGIPFIIIIG 60 (94)
T ss_dssp EEEEESSCSHHHHHH--------------HHHHHHHHHHHTTSEEE----EESSSSTHHHHHHHHHHTTESEEEEEE
T ss_pred EEEEEeCCCcHHHHH--------------HHHHHHHHHHHCCCEEE----EECCCCchhHHHHHHhhcCCeEEEEEC
Confidence 67888887 5442 24678888999996653 333555677888888777889999988
No 184
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=21.69 E-value=1.9e+02 Score=30.82 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHhccceeeee-----cccCC-----------HHHHHHHhhhhhcccccEEEecC--Cc---------ccC
Q 005900 219 NRAMLLAAAMQQHCKLIDLG-----IVRDD-----------EEELEKTLDNAFSAGIDILLTSG--GV---------SMG 271 (671)
Q Consensus 219 N~~~L~a~l~~~G~~v~~~~-----iv~Dd-----------~~~i~~~l~~a~~~~~DiVIttG--G~---------s~G 271 (671)
++.+++++|++.|++...+. ++-|+ ...+.+.+.+.+++ .++.|++| |. |.|
T Consensus 129 Sa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~-~~vpVv~Gfig~~~~g~~ttlgRg 207 (298)
T cd04244 129 SAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLED-GKIPVVTGFIGATEDGAITTLGRG 207 (298)
T ss_pred HHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhc-CCEEEEeCccccCCCCCEEEecCC
Confidence 57789999999998766554 22222 34455566655553 58999988 32 233
Q ss_pred Cccchhhhhcc-cc--eEEEe
Q 005900 272 DKDFVKPLLQK-KG--TIYFN 289 (671)
Q Consensus 272 ~~D~~~~~l~~-~g--~i~f~ 289 (671)
.-|++..++.. ++ ++.++
T Consensus 208 gsD~~A~~~A~~l~a~~l~i~ 228 (298)
T cd04244 208 GSDYSATIIGAALDADEIWIW 228 (298)
T ss_pred ChHHHHHHHHHHcCCCEEEEE
Confidence 45888887776 44 45443
No 185
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=21.63 E-value=31 Score=33.80 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=56.3
Q ss_pred CceEEEeccc---cCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchh
Q 005900 509 GAKVVATDVV---PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFA 585 (671)
Q Consensus 509 G~~v~~~~iv---~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~ 585 (671)
|++|..++.- +.|.-.+...+.+++....+|.-|..-|||.|- .+..-+.||+....-.. ...+
T Consensus 26 G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~---------siaANKv~GIRAA~~~d----~~sA 92 (171)
T PRK08622 26 GHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGI---------SNAVNKVPGIRSALVRD----MTSA 92 (171)
T ss_pred CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHHH---------HHHHhcCCCeEEEEeCC----HHHH
Confidence 9999999873 345666777777766546789999999999762 22223456665432211 1112
Q ss_pred hhcccccccccceEEEeCCCChhhHHHHHHH
Q 005900 586 MLSRSAAGIRGSTLIINMPGNPNAVAECMEA 616 (671)
Q Consensus 586 ~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ 616 (671)
. .+-..|+.-|++|++--.+...+.+.
T Consensus 93 ~----~aR~hNnaNVL~lG~r~ig~~~a~~i 119 (171)
T PRK08622 93 L----YAKEELNANVIGFGGKITGELLMCDI 119 (171)
T ss_pred H----HHHHhcCCcEEEEChhhcCHHHHHHH
Confidence 2 22236888999999766555554444
No 186
>CHL00101 trpG anthranilate synthase component 2
Probab=21.55 E-value=1.6e+02 Score=28.90 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=31.4
Q ss_pred ccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCccc
Q 005900 216 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 270 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~s~ 270 (671)
+||-++.|..+|++.|+++. +++.+...+.+ +.. . +.|.||.+||-+-
T Consensus 8 ~dsft~~l~~~l~~~g~~~~---v~~~~~~~~~~-~~~--~-~~dgiiisgGpg~ 55 (190)
T CHL00101 8 YDSFTYNLVQSLGELNSDVL---VCRNDEIDLSK-IKN--L-NIRHIIISPGPGH 55 (190)
T ss_pred CCchHHHHHHHHHhcCCCEE---EEECCCCCHHH-Hhh--C-CCCEEEECCCCCC
Confidence 57788999999999997764 44433211211 211 1 4899999999853
No 187
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=21.43 E-value=70 Score=27.39 Aligned_cols=28 Identities=39% Similarity=0.459 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhhhcCCCcchhHHHHHh
Q 005900 18 SAEEALQKVLSVAQRLPPVTVPLYEALG 45 (671)
Q Consensus 18 s~~eA~~~i~~~~~~~~~e~v~l~~A~G 45 (671)
||+++++.+.+++..+....+||++|+.
T Consensus 11 sfE~~l~eLE~IV~~LE~Gel~Le~sl~ 38 (81)
T COG1722 11 SFEEALAELEEIVESLESGELPLEEALK 38 (81)
T ss_pred hHHHHHHHHHHHHHHHHcCcccHHHHHH
Confidence 8999999999999999888899988764
No 188
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=21.40 E-value=1.2e+02 Score=33.29 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=38.1
Q ss_pred HHHHHHHHhccceeeeecccCC--HHHHHHHhhhhhcccccEEEecCCcccCCccchh
Q 005900 222 MLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVK 277 (671)
Q Consensus 222 ~L~a~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~ 277 (671)
.+.+.|++.|.++..+.-+..+ .+.+.+.++.+.+.++|.||--||=|+- |..+
T Consensus 42 ~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~--D~AK 97 (375)
T cd08194 42 KLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPI--DTAK 97 (375)
T ss_pred HHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH--HHHH
Confidence 5778888888887666544434 4568888877766679999988876553 5544
No 189
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=21.28 E-value=1.2e+02 Score=33.03 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=35.0
Q ss_pred HHHHHHHhccceeeeecccCC--HHHHHHHhhhhhcccccEEEecCCcccCCccchh
Q 005900 223 LLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVK 277 (671)
Q Consensus 223 L~a~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~ 277 (671)
+...|++.|.++..+.-+.-+ .+.+.+.++.+.+.++|.||--||=|+- |..+
T Consensus 40 ~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~--D~aK 94 (367)
T cd08182 40 LTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVL--DTAK 94 (367)
T ss_pred HHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHH--HHHH
Confidence 556677888776655433323 4667777777766679999988886553 5544
No 190
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.15 E-value=1e+02 Score=29.74 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=44.3
Q ss_pred EEEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhc----CCccceEEEeecCCCCC
Q 005900 475 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWS----DIDKMDLILTLGGTGFT 550 (671)
Q Consensus 475 ~IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~----~~~~~DlVIttGGtG~~ 550 (671)
-|+.+||.+..|.-......|...+..++.....++++...++-.+....+.+.+.... ...+.|+|+..-|+-=.
T Consensus 3 ~i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~ 82 (193)
T cd01835 3 RLIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDT 82 (193)
T ss_pred EEEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCccc
Confidence 36778999998754322222322222211111126788888888888877766554322 11368999988777543
No 191
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=20.89 E-value=32 Score=33.67 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=54.9
Q ss_pred CceEEEeccc---cCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCChHHHHHhhhhcCCCeeeeeecccccccchh
Q 005900 509 GAKVVATDVV---PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFA 585 (671)
Q Consensus 509 G~~v~~~~iv---~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T~eal~~~~~~~l~gi~e~~~~~~~~~~pg~ 585 (671)
|++|..++.- +.|...+...+.+++...++|.-|..-|||.|- . +..-+.||+...+-.. .-.+
T Consensus 26 G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~--------s-iaANK~~GIRAA~~~d----~~~A 92 (171)
T PRK12615 26 GYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGI--------N-NAVNKVPGIRSALVRD----MTTA 92 (171)
T ss_pred CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHH--------H-HHHhcCCCeEEEEeCC----HHHH
Confidence 8999998863 345666777776666546789999999999662 1 2222456654432211 0111
Q ss_pred hhcccccccccceEEEeCCCChhhHHHHHHH
Q 005900 586 MLSRSAAGIRGSTLIINMPGNPNAVAECMEA 616 (671)
Q Consensus 586 ~lsr~~~G~~~~~~i~~LPG~P~a~~~~~~~ 616 (671)
. .+-..|+.-|++|++--.+...+.+.
T Consensus 93 ~----~ar~hNnaNVL~lG~r~ig~~~a~~I 119 (171)
T PRK12615 93 L----YAKEELNANVIGFGGKITGELLMCDI 119 (171)
T ss_pred H----HHHHhcCCcEEEEChhhcCHHHHHHH
Confidence 2 22236888999999765555444443
No 192
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.82 E-value=2e+02 Score=26.97 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=43.9
Q ss_pred EEeecCCcccccccccccccccccchhHHHHHHHHH--hccceeeeecccCCHHHHHHHhhhhhcc-cccEEEecCCc
Q 005900 194 AVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQ--QHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSGGV 268 (671)
Q Consensus 194 ~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~--~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~~DiVIttGG~ 268 (671)
-|+..||-+..-... ...++=...|.+.|++ .+++++..++-.+....+.+.+.+.+.. ..|+|+...|+
T Consensus 2 ~i~~~GDSit~G~~~-----~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ 74 (177)
T cd01822 2 TILALGDSLTAGYGL-----PPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGG 74 (177)
T ss_pred eEEEEccccccCcCC-----CCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 467779988632110 1122234456666654 3677888888888877766666655432 58999988775
No 193
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=20.79 E-value=2.1e+02 Score=24.14 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=30.6
Q ss_pred ccchhHHHHHHHHHh----c--cceeeeecccC---CHHHHHHHhhhhhcccccEEEecCCcc
Q 005900 216 RDSNRAMLLAAAMQQ----H--CKLIDLGIVRD---DEEELEKTLDNAFSAGIDILLTSGGVS 269 (671)
Q Consensus 216 ~dsN~~~L~a~l~~~----G--~~v~~~~iv~D---d~~~i~~~l~~a~~~~~DiVIttGG~s 269 (671)
+..|-..+.++++.+ + =.+.-++...| ........+.+.+.+-+|.||++|.-.
T Consensus 20 ~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 20 YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 566777777777655 2 22344454455 555555566665553367788887653
No 194
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.73 E-value=1.7e+02 Score=27.85 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=44.6
Q ss_pred EEEeecccccCCCCCCCCCceEEEecCCccccCCceEEEeccccCChhhHHHHHhhhcCCccceEEEeecCCCCCCCCCC
Q 005900 476 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 555 (671)
Q Consensus 476 IIt~GdEl~~G~~~D~n~~~l~~~L~~~~~~~~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVIttGGtG~~~~D~T 555 (671)
|+.+||.+..|--......|...+-... ++++...++-.+....+.+.++..+...+.|+|+..-|+==...+.+
T Consensus 3 i~~~GDSi~~g~~~~~~~~~~~~l~~~~-----~~~v~n~g~~G~~~~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~ 77 (183)
T cd04501 3 VVCLGDSITYGYPVGPEASWVNLLAEFL-----GKEVINRGINGDTTSQMLVRFYEDVIALKPAVVIIMGGTNDIIVNTS 77 (183)
T ss_pred EEEEccccccCcCCCCcchHHHHHHhhc-----CCeEEecCcCCccHHHHHHHHHHHHHhcCCCEEEEEeccCccccCCC
Confidence 6788999987743221111111111112 56777777777766666666655433357999998877653333333
Q ss_pred hHHHHH
Q 005900 556 PEATKE 561 (671)
Q Consensus 556 ~eal~~ 561 (671)
.+.+.+
T Consensus 78 ~~~~~~ 83 (183)
T cd04501 78 LEMIKD 83 (183)
T ss_pred HHHHHH
Confidence 444333
No 195
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=20.72 E-value=1.5e+02 Score=28.75 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=42.3
Q ss_pred EeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHH--Hhhhhhcc--cccEEEecCCc
Q 005900 195 VLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK--TLDNAFSA--GIDILLTSGGV 268 (671)
Q Consensus 195 iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~--~l~~a~~~--~~DiVIttGG~ 268 (671)
|+..||-+.+-... ...+++-...|...+.+ ++++...++-.+....+.. .+...+.. ..|+||...|+
T Consensus 3 i~~~GDS~t~G~~~----~~~~~~w~~~l~~~~~~-~~~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ 75 (198)
T cd01821 3 IFLAGDSTVADYDP----GAPQAGWGQALPQYLDT-GITVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGH 75 (198)
T ss_pred EEEEecCCcccCCC----CCCCCChHHHHHHHhCC-CCEEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCC
Confidence 44558887743221 12334555556666654 7889999999888765432 23333321 48999999886
No 196
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=20.64 E-value=1.2e+02 Score=33.40 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=36.6
Q ss_pred HHHHHHHHHhccceeeeecccC--CHHHHHHHhhhhhcccccEEEecCCcccCCccchhh
Q 005900 221 AMLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKP 278 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~ 278 (671)
..+.+.|++.|.++..+.-+.. +.+.+.+.++.+.+.++|+||--||=|+ -|..+-
T Consensus 44 ~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~--iD~aK~ 101 (380)
T cd08185 44 DRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS--MDTAKA 101 (380)
T ss_pred HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH--HHHHHH
Confidence 3567778888888765543332 3355777777766667999998777554 255543
No 197
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=20.63 E-value=1.2e+02 Score=33.13 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhccceeeeeccc-CCHHHHHHHhhhhhcccccEEEecCCcccCCccchhh
Q 005900 220 RAMLLAAAMQQHCKLIDLGIVR-DDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKP 278 (671)
Q Consensus 220 ~~~L~a~l~~~G~~v~~~~iv~-Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~ 278 (671)
...+.+.|++.| ++..+ +.+ -+.+.+.+.++.+.+.++|+||--||=+++ |..+-
T Consensus 50 ~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~--D~ak~ 105 (350)
T PRK00843 50 GDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVI--DVAKL 105 (350)
T ss_pred HHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHH--HHHHH
Confidence 456777787777 65443 333 344567777777766579999988886554 55443
No 198
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=20.63 E-value=1.7e+02 Score=28.11 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=47.9
Q ss_pred HHHHHHhcc--ceeeeecccCCHHHHHHHhhhhhc-ccccEEEecCCcccCC---ccchhhhhcccceEEEecccccCCC
Q 005900 224 LAAAMQQHC--KLIDLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD---KDFVKPLLQKKGTIYFNKVCMKPGK 297 (671)
Q Consensus 224 ~a~l~~~G~--~v~~~~iv~Dd~~~i~~~l~~a~~-~~~DiVIttGG~s~G~---~D~~~~~l~~~g~i~f~~v~~~PGk 297 (671)
.+.|++.|. +.++.-.||--.|. --+++.+++ .++|-||+.|=+=-|+ +||+.....+- +-.++++=++
T Consensus 35 ~~~l~~~gv~~~~i~v~~VPGa~Ei-P~a~~~l~~~~~~DavIalG~VIrG~T~H~e~V~~~v~~g----l~~v~l~~~~ 109 (154)
T PRK00061 35 LDALKRHGVSEENIDVVRVPGAFEI-PLAAKKLAESGKYDAVIALGAVIRGETPHFDYVANEVAKG----LADVSLETGV 109 (154)
T ss_pred HHHHHHcCCCccceEEEECCCHHHH-HHHHHHHHHcCCCCEEEEEeeEEcCCCchHHHHHHHHHHH----HHHHHhccCC
Confidence 345556673 23344456765443 233333332 2599999999884444 47777666542 5567888899
Q ss_pred cceeeEec
Q 005900 298 PLTFAEIN 305 (671)
Q Consensus 298 p~~~a~~~ 305 (671)
|+.||.+.
T Consensus 110 PV~~GVLt 117 (154)
T PRK00061 110 PVGFGVLT 117 (154)
T ss_pred CEEEEecC
Confidence 99999884
No 199
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.53 E-value=1.4e+02 Score=29.04 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=40.3
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHH------HHhhhhhcccccEEE
Q 005900 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELE------KTLDNAFSAGIDILL 263 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~------~~l~~a~~~~~DiVI 263 (671)
..+|+|+-.|+ -+..++.+++.+|++|..+..-++..+... ..+++++. .+|+|+
T Consensus 36 g~tvgIiG~G~------------------IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~-~aDiv~ 96 (178)
T PF02826_consen 36 GKTVGIIGYGR------------------IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLA-QADIVS 96 (178)
T ss_dssp TSEEEEESTSH------------------HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHH-H-SEEE
T ss_pred CCEEEEEEEcC------------------CcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcc-hhhhhh
Confidence 45788887774 367899999999999998887766544222 34566666 499998
Q ss_pred ecCCc
Q 005900 264 TSGGV 268 (671)
Q Consensus 264 ttGG~ 268 (671)
.+=-.
T Consensus 97 ~~~pl 101 (178)
T PF02826_consen 97 LHLPL 101 (178)
T ss_dssp E-SSS
T ss_pred hhhcc
Confidence 77654
No 200
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.47 E-value=1.5e+02 Score=32.04 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=44.4
Q ss_pred cceEEEeecCCcccccccccccccccccchhHHHHHHHHHhccceeeeecccCCHHHHHHHhhhhhcccccEEEecCCc
Q 005900 190 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 268 (671)
Q Consensus 190 ~prV~iistGdElv~~~~~~~~~G~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DiVIttGG~ 268 (671)
..||+||..-+. .|+ +....+.+.+++.|.+++.....+.+...+...+.++...++|+|++.+-.
T Consensus 140 ~~kvaiv~~~~~----------~g~---~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~ 205 (351)
T cd06334 140 GKKIALVYHDSP----------FGK---EPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWG 205 (351)
T ss_pred CCeEEEEeCCCc----------cch---hhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEeccc
Confidence 467888876432 121 234457788899999988777776555566666666665579999876543
No 201
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=20.35 E-value=97 Score=31.94 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhccceeeeec--cc--CCHHHHHHHhhhhhcccccEEEecCCcccC--Cccchhhhhcc-cc-eEEEe
Q 005900 219 NRAMLLAAAMQQHCKLIDLGI--VR--DDEEELEKTLDNAFSAGIDILLTSGGVSMG--DKDFVKPLLQK-KG-TIYFN 289 (671)
Q Consensus 219 N~~~L~a~l~~~G~~v~~~~i--v~--Dd~~~i~~~l~~a~~~~~DiVIttGG~s~G--~~D~~~~~l~~-~g-~i~f~ 289 (671)
|+.+|.+.|.+.|.+..-+.- .| -++...+++++. ++ .-.+||..||++-- .-|-+....+. ++ ++++.
T Consensus 83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~-l~-~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~ 159 (238)
T COG0528 83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRH-LE-KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLK 159 (238)
T ss_pred HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHH-HH-cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEE
Confidence 788899999988877543332 23 334444455554 34 36999999988654 24655544443 44 55543
No 202
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=20.06 E-value=1.1e+02 Score=33.84 Aligned_cols=56 Identities=21% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccceeeeecccCC--HHHHHHHhhhhhcccccEEEecCCcccCCccchhh
Q 005900 221 AMLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKP 278 (671)
Q Consensus 221 ~~L~a~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~DiVIttGG~s~G~~D~~~~ 278 (671)
..+...|++.|+++..+.-+.-+ .+.+.+.++.+.+.++|+||-.||=|+. |..+-
T Consensus 39 ~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i--D~AK~ 96 (398)
T cd08178 39 DKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSPM--DAAKI 96 (398)
T ss_pred HHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH--HHHHH
Confidence 35677888888877655433323 3567777777766679999987775553 55443
Done!