BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005901
(671 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
pdb|3K2A|B Chain B, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
Length = 67
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 397 LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451
P+ A I RAWLF+H HPYP + K+QLA+ TGLT QV+NWFINAR R+ +P
Sbjct: 5 FPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Pknox1
Length = 73
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 394 QRG-LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
+RG LP+ A ++R+WLF+H HPYP + +K+Q+A QT LT QV+NWFINAR R+
Sbjct: 10 KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 65
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Tgif2lx
Length = 83
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 397 LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
LP +V ILR W+++H YP + +KQ L+++T L+ Q+SNWFINAR R+
Sbjct: 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRI 65
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of
Human Homeobox Protein Tgif1, Northeast Structural
Genomics Consortium Target Hr4411b
Length = 89
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 397 LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
LP+ +V ILR WL+EH + YP + +K L++QT L+ QV NWFINAR RL
Sbjct: 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRL 63
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain
Bound To Dna
Length = 82
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449
A R +R ++A IL + + H +PYP + K++LAK++G+T SQVSNWF N R+R
Sbjct: 2 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIRYK 61
Query: 450 K 450
K
Sbjct: 62 K 62
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain
Length = 64
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 395 RGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVR 447
R + ++A IL + + H +PYP + K++LAK+ G+T SQVSNWF N R+R
Sbjct: 8 RHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 73
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449
A R +R ++A IL + + H +PYP + K++LAK+ G+T SQVSNWF N R+R
Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60
Query: 450 K 450
K
Sbjct: 61 K 61
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449
A R +R ++A IL + + H +PYP + K++LAK+ G+T SQVSNWF N R+R
Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60
Query: 450 K 450
K
Sbjct: 61 K 61
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 390 AWRPQRGLPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLW 449
A R +R ++A IL + + H +PYP + K++LA++ G+T SQVSNWF N R+R
Sbjct: 1 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYK 60
Query: 450 K 450
K
Sbjct: 61 K 61
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 399 ERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVR 447
E++ +LR W + H +PYP +K++LA+ TGLT +QVSNWF N R R
Sbjct: 503 EKSRGVLREW-YAH--NPYPSPREKRELAEATGLTTTQVSNWFKNRRQR 548
>pdb|1MNM|C Chain C, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|D Chain D, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 87
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 386 MQHHAWRPQRG--LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFIN 443
M + + +P RG + V IL +W ++ +PY + L K T L+R Q+ NW N
Sbjct: 21 MINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 80
Query: 444 AR 445
R
Sbjct: 81 RR 82
>pdb|1APL|C Chain C, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1APL|D Chain D, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1YRN|B Chain B, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1AKH|B Chain B, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 83
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 392 RPQRG--LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINAR 445
+P RG + V IL +W ++ +PY + L K T L+R Q+ NW N R
Sbjct: 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 57
>pdb|1LE8|B Chain B, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 83
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 392 RPQRG--LPERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVR 447
+P RG + V IL +W ++ +PY + L K T L+R Q+ NW R +
Sbjct: 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59
>pdb|1K61|A Chain A, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|B Chain B, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|C Chain C, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|D Chain D, Matalpha2 Homeodomain Bound To Dna
Length = 60
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 402 VTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINAR 445
V IL +W ++ +PY + L K T L+R Q+ NW N R
Sbjct: 10 VRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 53
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 422 DKQQLAKQTGLTRSQVSNWFINARVR 447
+K+++AK+ G+T QV WFIN R+R
Sbjct: 394 EKEEVAKKCGITPLQVRVWFINKRMR 419
>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|B Chain B, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|C Chain C, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
Length = 81
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450
YP +++LA++T LT +++ WF N R RL K
Sbjct: 42 YPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75
>pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
Protein Lhx9
Length = 80
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 418 PKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
P D +QLA++TGLT+ + WF NAR +
Sbjct: 32 PDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 62
>pdb|1AKH|A Chain A, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 61
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 406 RAWLFEHFLHPYPKDS-DKQQLAKQTGLTRSQVSNWFINARVR 447
RA+L E F +S +K+++AK+ G+T QV WFIN R+R
Sbjct: 17 RAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59
>pdb|2DA5|A Chain A, Solution Structure Of The Second Homeobox Domain Of Zinc
Fingers And Homeoboxes Protein 3 (Triple Homeobox 1
Protein)
Length = 75
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 399 ERAVTILRAWLFEHFLHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
ERA LRA +P P D + +L +T +TR ++ +WF R ++
Sbjct: 13 ERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKV 62
>pdb|1LE8|A Chain A, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 53
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 406 RAWLFEHFLHPYPKDS-DKQQLAKQTGLTRSQVSNWFINARVR 447
RA+L + F +S +K+++AK+ G+T QV WFIN R+R
Sbjct: 9 RAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 51
>pdb|2LY9|A Chain A, Solution Nmr Structure Of Homeobox 2 Domain From Human
Zhx1 Repressor, Northeast Structural Genomics Consortium
(Nesg) Target Hr7907f
Length = 74
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINAR 445
+P DS+ +L K TGLT+ ++ WF + R
Sbjct: 30 FPHDSEIIRLMKITGLTKGEIKKWFSDTR 58
>pdb|1YRN|A Chain A, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1F43|A Chain A, Solution Structure Of The Mata1 Homeodomain
Length = 61
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 406 RAWLFEHFLHPYPKDS-DKQQLAKQTGLTRSQVSNWFINARVR 447
RA+L + F +S +K+++AK+ G+T QV WFIN R+R
Sbjct: 17 RAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59
>pdb|3NAU|A Chain A, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
pdb|3NAU|B Chain B, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
Length = 66
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINARVR 447
+P D++ +L + TGL RS++ WF + R R
Sbjct: 28 FPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58
>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
Length = 59
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
Y + +QQL+ + GL +Q+ WF NAR ++
Sbjct: 25 YLTERRRQQLSSELGLNEAQIKIWFQNARAKI 56
>pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOS|B Chain B, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOT|A Chain A, Phage Selected Homeodomain Bound To Modified Dna
pdb|2HOT|B Chain B, Phage Selected Homeodomain Bound To Modified Dna
Length = 63
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 415 HPYPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
+ Y + +QQL+ + GL +QV WF N R ++
Sbjct: 26 NRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKI 59
>pdb|3NAR|A Chain A, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
pdb|3NAR|B Chain B, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
Length = 96
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 416 PYPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450
P P++ DK LAK++GL R+ + +WF + R WK
Sbjct: 50 PSPEEYDK--LAKESGLARTDIVSWFGDTRY-AWK 81
>pdb|1DU0|A Chain A, Engrailed Homeodomain Q50a Variant Dna Complex
pdb|1DU0|B Chain B, Engrailed Homeodomain Q50a Variant Dna Complex
Length = 57
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
Y + +QQL+ + GL +Q+ WF N R ++
Sbjct: 23 YLTERRRQQLSSELGLNEAQIKIWFANKRAKI 54
>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4490c
Length = 75
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWKP 451
YP ++QLA +T LT ++V WF N R + W+
Sbjct: 33 YPDVYAREQLAMRTDLTEARVQVWFQNRRAK-WRK 66
>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna
Length = 58
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINARVRLWK 450
YP +++LA + GLT +++ WF N R + W+
Sbjct: 23 YPDVFTREELAMKIGLTEARIQVWFQNRRAK-WR 55
>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52e
Length = 59
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
Y + +QQL+ + GL +Q+ WF N R ++
Sbjct: 25 YLTERRRQQLSSELGLNEAQIKIWFQNERAKI 56
>pdb|1ENH|A Chain A, Structural Studies Of The Engrailed Homeodomain
Length = 54
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
Y + +QQL+ + GL +Q+ WF N R ++
Sbjct: 23 YLTERRRQQLSSELGLNEAQIKIWFQNKRAKI 54
>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
Length = 61
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 417 YPKDSDKQQLAKQTGLTRSQVSNWFINARVRL 448
Y + +QQL+ + GL +Q+ WF N R ++
Sbjct: 27 YLTERRRQQLSSELGLNEAQIKIWFQNKRAKI 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,847,798
Number of Sequences: 62578
Number of extensions: 599724
Number of successful extensions: 18309
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 18236
Number of HSP's gapped (non-prelim): 65
length of query: 671
length of database: 14,973,337
effective HSP length: 105
effective length of query: 566
effective length of database: 8,402,647
effective search space: 4755898202
effective search space used: 4755898202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)