Query 005902
Match_columns 671
No_of_seqs 329 out of 619
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 15:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 2E-153 5E-158 1284.7 53.7 585 44-670 2-618 (719)
2 PF07059 DUF1336: Protein of u 100.0 7.2E-39 1.6E-43 325.3 10.5 120 551-670 1-139 (227)
3 cd08904 START_STARD6-like Lipi 100.0 4.4E-36 9.6E-41 300.8 22.7 184 231-428 20-203 (204)
4 cd08914 START_STARD15-like Lip 100.0 2.3E-34 5E-39 292.9 20.2 180 202-400 26-209 (236)
5 cd08873 START_STARD14_15-like 100.0 1.2E-33 2.7E-38 287.9 23.4 181 198-396 21-205 (235)
6 cd08913 START_STARD14-like Lip 100.0 2.8E-33 6E-38 286.7 21.0 181 202-400 29-213 (240)
7 cd08868 START_STARD1_3_like Ch 100.0 1.2E-32 2.6E-37 275.5 24.2 186 229-430 20-207 (208)
8 cd08907 START_STARD8-like C-te 100.0 4.4E-33 9.5E-38 276.6 18.0 179 230-430 24-204 (205)
9 cd08909 START_STARD13-like C-t 100.0 1E-32 2.2E-37 276.4 19.8 177 233-430 27-204 (205)
10 cd08906 START_STARD3-like Chol 100.0 2.3E-32 5.1E-37 274.8 21.4 188 227-430 19-208 (209)
11 cd08902 START_STARD4-like Lipi 100.0 2.2E-32 4.7E-37 271.1 20.2 182 230-428 20-201 (202)
12 cd08869 START_RhoGAP C-termina 100.0 5.6E-32 1.2E-36 269.5 22.3 178 231-430 17-196 (197)
13 cd08867 START_STARD4_5_6-like 100.0 8.1E-32 1.8E-36 269.1 23.1 183 232-428 21-205 (206)
14 cd08903 START_STARD5-like Lipi 100.0 2.6E-31 5.6E-36 266.9 23.1 188 231-430 20-207 (208)
15 cd08874 START_STARD9-like C-te 100.0 5.5E-31 1.2E-35 264.3 21.1 194 221-430 8-205 (205)
16 cd08871 START_STARD10-like Lip 100.0 3.8E-29 8.3E-34 252.6 21.9 170 228-414 18-189 (222)
17 cd08905 START_STARD1-like Chol 100.0 2.4E-29 5.2E-34 252.8 19.7 184 231-430 23-208 (209)
18 smart00234 START in StAR and p 100.0 8.1E-29 1.8E-33 245.1 23.1 185 227-428 13-200 (206)
19 PF01852 START: START domain; 100.0 1.7E-27 3.6E-32 235.1 22.8 188 229-432 15-204 (206)
20 cd08872 START_STARD11-like Cer 100.0 6.7E-28 1.5E-32 246.7 19.1 190 231-431 24-227 (235)
21 cd08908 START_STARD12-like C-t 100.0 7.4E-28 1.6E-32 241.4 18.3 176 233-430 27-203 (204)
22 cd08911 START_STARD7-like Lipi 99.9 1.4E-26 2.9E-31 232.5 20.7 181 231-427 19-203 (207)
23 cd00177 START Lipid-binding ST 99.9 1.1E-25 2.3E-30 217.4 22.6 154 233-399 15-168 (193)
24 cd08910 START_STARD2-like Lipi 99.9 1.1E-25 2.4E-30 226.1 18.2 177 231-428 23-204 (207)
25 cd08876 START_1 Uncharacterize 99.9 3.8E-25 8.2E-30 217.7 21.2 181 228-428 11-194 (195)
26 cd08870 START_STARD2_7-like Li 99.9 1E-24 2.2E-29 218.9 20.6 179 233-428 22-206 (209)
27 cd08877 START_2 Uncharacterize 99.9 4.3E-22 9.3E-27 200.4 16.5 180 227-422 16-209 (215)
28 KOG2761 START domain-containin 99.9 1.2E-20 2.5E-25 188.8 17.5 162 229-400 25-189 (219)
29 cd08875 START_ArGLABRA2_like C 99.6 1.1E-14 2.3E-19 148.4 16.9 132 255-399 56-200 (229)
30 KOG1739 Serine/threonine prote 99.6 2.3E-15 4.9E-20 163.1 8.5 167 229-400 399-577 (611)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.2 9.1E-10 2E-14 111.5 16.9 131 286-428 65-206 (208)
32 cd01246 PH_oxysterol_bp Oxyste 99.1 3.3E-10 7.1E-15 97.6 9.9 91 48-152 1-91 (91)
33 cd01251 PH_centaurin_alpha Cen 99.1 5.9E-10 1.3E-14 100.7 9.6 100 48-154 1-101 (103)
34 PF00169 PH: PH domain; Inter 99.0 2.3E-09 5E-14 92.3 10.1 100 47-153 2-103 (104)
35 smart00233 PH Pleckstrin homol 99.0 6.8E-09 1.5E-13 87.6 11.8 100 47-153 2-101 (102)
36 cd01260 PH_CNK Connector enhan 99.0 3.2E-09 6.9E-14 93.8 9.9 94 47-152 1-96 (96)
37 cd01257 PH_IRS Insulin recepto 98.9 2E-08 4.4E-13 90.8 10.7 92 46-151 2-100 (101)
38 cd01233 Unc104 Unc-104 pleckst 98.8 5.1E-08 1.1E-12 87.5 10.4 95 47-153 3-98 (100)
39 cd01250 PH_centaurin Centaurin 98.8 4.5E-08 9.8E-13 84.7 9.6 94 48-152 1-94 (94)
40 cd01235 PH_SETbf Set binding f 98.8 4.5E-08 9.8E-13 86.7 9.7 95 48-153 1-101 (101)
41 cd01247 PH_GPBP Goodpasture an 98.7 5.6E-08 1.2E-12 86.1 10.0 87 48-151 1-90 (91)
42 cd01252 PH_cytohesin Cytohesin 98.7 1.1E-07 2.3E-12 88.5 11.6 95 48-154 2-114 (125)
43 cd01238 PH_Tec Tec pleckstrin 98.7 6E-08 1.3E-12 88.1 9.5 96 48-151 2-105 (106)
44 PF15413 PH_11: Pleckstrin hom 98.7 5.3E-08 1.2E-12 89.4 8.8 96 48-152 1-112 (112)
45 cd01265 PH_PARIS-1 PARIS-1 ple 98.7 1.1E-07 2.3E-12 84.7 9.7 91 48-152 1-93 (95)
46 cd01241 PH_Akt Akt pleckstrin 98.7 1.4E-07 3E-12 85.1 10.1 94 47-152 2-101 (102)
47 cd00900 PH-like Pleckstrin hom 98.6 2.4E-07 5.1E-12 78.1 8.7 96 48-152 1-99 (99)
48 cd01266 PH_Gab Gab (Grb2-assoc 98.5 8.3E-07 1.8E-11 80.7 10.0 95 49-152 2-107 (108)
49 cd01244 PH_RasGAP_CG9209 RAS_G 98.4 1.3E-06 2.8E-11 78.8 8.4 84 58-152 15-98 (98)
50 cd01264 PH_melted Melted pleck 98.3 2.7E-06 5.9E-11 77.1 9.7 97 48-152 2-100 (101)
51 cd01245 PH_RasGAP_CG5898 RAS G 98.3 1.5E-06 3.3E-11 78.3 7.7 88 50-151 3-97 (98)
52 cd01236 PH_outspread Outspread 98.3 3.9E-06 8.5E-11 76.4 8.9 94 48-150 1-101 (104)
53 cd01219 PH_FGD FGD (faciogenit 98.3 7.5E-06 1.6E-10 73.7 10.6 98 47-154 3-100 (101)
54 cd00821 PH Pleckstrin homology 98.3 3.5E-06 7.7E-11 70.3 7.7 95 48-152 1-96 (96)
55 cd01253 PH_beta_spectrin Beta- 98.2 6E-06 1.3E-10 74.0 9.6 96 48-152 1-104 (104)
56 cd01263 PH_anillin Anillin Ple 98.2 8.3E-06 1.8E-10 76.4 8.9 105 46-152 1-122 (122)
57 cd01254 PH_PLD Phospholipase D 98.2 1E-05 2.3E-10 75.3 9.5 80 66-152 34-121 (121)
58 cd07813 COQ10p_like Coenzyme Q 98.1 3.9E-05 8.5E-10 71.2 12.5 133 263-429 3-136 (138)
59 cd01220 PH_CDEP Chondrocyte-de 98.1 2.7E-05 5.8E-10 70.3 10.6 96 47-154 3-98 (99)
60 PF15409 PH_8: Pleckstrin homo 98.1 9.3E-06 2E-10 72.0 7.5 85 50-152 1-88 (89)
61 PF11274 DUF3074: Protein of u 98.0 0.00013 2.8E-09 72.9 15.1 145 268-423 13-179 (184)
62 cd08866 SRPBCC_11 Ligand-bindi 98.0 0.00016 3.4E-09 67.2 14.3 142 262-429 2-143 (144)
63 cd01256 PH_dynamin Dynamin ple 97.9 4.8E-05 1E-09 68.4 8.9 96 48-152 3-104 (110)
64 cd01237 Unc112 Unc-112 pleckst 97.9 6.6E-05 1.4E-09 68.6 8.8 90 58-153 13-103 (106)
65 KOG2200 Tumour suppressor prot 97.9 3.4E-06 7.5E-11 94.8 0.4 92 321-432 575-666 (674)
66 cd01230 PH_EFA6 EFA6 Pleckstri 97.6 0.00052 1.1E-08 63.9 10.6 100 48-154 2-112 (117)
67 KOG0930 Guanine nucleotide exc 97.6 0.00018 3.9E-09 75.2 8.3 97 46-154 260-376 (395)
68 cd07819 SRPBCC_2 Ligand-bindin 97.6 0.0023 5E-08 58.5 14.4 134 261-427 4-139 (140)
69 cd05018 CoxG Carbon monoxide d 97.3 0.0041 8.9E-08 57.1 12.7 114 261-399 3-116 (144)
70 PF12814 Mcp5_PH: Meiotic cell 97.2 0.0027 5.8E-08 59.4 10.5 103 49-154 12-122 (123)
71 cd08861 OtcD1_ARO-CYC_like N-t 97.2 0.0075 1.6E-07 55.8 12.7 136 264-429 4-141 (142)
72 cd08860 TcmN_ARO-CYC_like N-te 97.0 0.031 6.7E-07 53.6 15.1 136 264-430 6-144 (146)
73 cd07817 SRPBCC_8 Ligand-bindin 96.8 0.04 8.7E-07 50.3 14.3 107 262-399 3-109 (139)
74 cd07821 PYR_PYL_RCAR_like Pyra 96.7 0.058 1.2E-06 48.9 14.2 137 261-428 3-139 (140)
75 PF10604 Polyketide_cyc2: Poly 96.5 0.25 5.5E-06 44.7 17.1 135 261-428 4-138 (139)
76 PF15410 PH_9: Pleckstrin homo 96.1 0.031 6.6E-07 51.9 8.9 99 48-153 2-118 (119)
77 PF03364 Polyketide_cyc: Polyk 96.1 0.13 2.9E-06 46.8 13.1 109 267-399 1-109 (130)
78 cd01224 PH_Collybistin Collybi 96.1 0.083 1.8E-06 48.8 11.4 100 47-151 3-105 (109)
79 PRK10724 hypothetical protein; 96.0 0.18 4E-06 49.2 14.0 113 259-399 15-127 (158)
80 KOG0690 Serine/threonine prote 95.6 0.018 3.8E-07 62.3 5.7 101 44-154 13-117 (516)
81 cd01239 PH_PKD Protein kinase 95.5 0.037 8E-07 51.5 6.4 51 48-105 2-52 (117)
82 cd08865 SRPBCC_10 Ligand-bindi 94.8 0.77 1.7E-05 41.4 13.0 36 263-300 3-38 (140)
83 cd07812 SRPBCC START/RHO_alpha 94.7 1.4 3E-05 38.3 14.2 113 262-399 2-114 (141)
84 cd01234 PH_CADPS CADPS (Ca2+-d 94.5 0.052 1.1E-06 49.7 4.5 98 48-152 4-109 (117)
85 cd01218 PH_phafin2 Phafin2 Pl 94.5 0.4 8.7E-06 43.9 10.4 93 46-155 4-100 (104)
86 KOG3845 MLN, STAR and related 94.2 0.0025 5.5E-08 66.3 -5.1 156 235-399 27-182 (241)
87 cd01261 PH_SOS Son of Sevenles 93.8 0.48 1E-05 44.1 9.4 103 44-154 2-110 (112)
88 cd08862 SRPBCC_Smu440-like Lig 92.9 4.5 9.8E-05 36.7 14.5 40 261-302 3-42 (138)
89 cd01259 PH_Apbb1ip Apbb1ip (Am 92.7 0.33 7.2E-06 45.1 6.6 105 47-154 1-109 (114)
90 cd01223 PH_Vav Vav pleckstrin 92.6 0.5 1.1E-05 44.2 7.6 89 65-154 20-112 (116)
91 cd01243 PH_MRCK MRCK (myotonic 92.4 1.6 3.5E-05 41.2 10.6 106 46-152 2-118 (122)
92 PF15408 PH_7: Pleckstrin homo 92.4 0.094 2E-06 46.5 2.4 92 49-150 1-94 (104)
93 PTZ00267 NIMA-related protein 92.2 0.35 7.6E-06 54.6 7.4 100 44-153 375-476 (478)
94 cd07818 SRPBCC_1 Ligand-bindin 92.0 7.1 0.00015 36.3 14.8 38 261-300 4-41 (150)
95 cd07822 SRPBCC_4 Ligand-bindin 91.9 7.4 0.00016 35.0 14.5 35 262-298 3-37 (141)
96 cd01221 PH_ephexin Ephexin Ple 91.3 1.8 3.9E-05 41.1 9.9 96 47-150 4-119 (125)
97 cd07824 SRPBCC_6 Ligand-bindin 91.3 5.1 0.00011 37.6 13.1 36 263-300 5-40 (146)
98 cd01222 PH_clg Clg (common-sit 90.8 2 4.3E-05 39.0 9.3 93 46-154 4-96 (97)
99 cd07823 SRPBCC_5 Ligand-bindin 90.5 7.9 0.00017 36.3 13.6 40 263-307 3-42 (146)
100 cd01242 PH_ROK Rok (Rho- assoc 88.5 4 8.6E-05 38.1 9.5 94 47-153 1-110 (112)
101 KOG1090 Predicted dual-specifi 87.4 0.53 1.2E-05 57.0 3.9 93 47-153 1635-1731(1732)
102 cd01249 PH_oligophrenin Oligop 86.5 5.8 0.00013 36.6 9.3 95 48-150 1-102 (104)
103 PF14593 PH_3: PH domain; PDB: 86.1 3.3 7.2E-05 38.1 7.5 89 44-156 11-102 (104)
104 KOG2059 Ras GTPase-activating 85.8 1.7 3.7E-05 51.3 6.7 101 44-154 563-665 (800)
105 cd07825 SRPBCC_7 Ligand-bindin 85.3 30 0.00065 31.8 15.1 29 262-292 3-31 (144)
106 cd01225 PH_Cool_Pix Cool (clon 84.0 3.9 8.4E-05 38.1 7.0 78 63-151 26-107 (111)
107 PF06240 COXG: Carbon monoxide 83.8 31 0.00067 32.5 13.4 111 264-399 2-112 (140)
108 cd07816 Bet_v1-like Ligand-bin 82.2 43 0.00094 31.9 13.8 120 261-399 3-123 (148)
109 KOG3640 Actin binding protein 81.9 3.7 8E-05 49.9 7.5 111 42-155 986-1108(1116)
110 cd01232 PH_TRIO Trio pleckstri 70.1 30 0.00065 32.3 8.7 89 64-154 23-113 (114)
111 COG2867 Oligoketide cyclase/li 69.6 63 0.0014 31.7 10.9 108 261-399 4-115 (146)
112 PLN02866 phospholipase D 69.5 17 0.00037 45.4 8.7 80 66-154 219-308 (1068)
113 cd07814 SRPBCC_CalC_Aha1-like 62.6 1.2E+02 0.0025 27.3 13.4 29 262-292 3-31 (139)
114 KOG4236 Serine/threonine prote 61.2 6.3 0.00014 45.8 2.8 37 42-81 409-445 (888)
115 cd01248 PH_PLC Phospholipase C 61.0 35 0.00076 31.2 7.3 94 51-151 11-114 (115)
116 cd01258 PH_syntrophin Syntroph 59.8 29 0.00062 32.3 6.4 86 63-151 17-107 (108)
117 TIGR01599 PYST-A Plasmodium yo 59.1 1.6E+02 0.0034 30.6 12.2 112 260-376 60-201 (208)
118 cd07820 SRPBCC_3 Ligand-bindin 49.6 19 0.00042 33.3 3.7 38 263-302 3-40 (137)
119 cd01227 PH_Dbs Dbs (DBL's big 47.8 1.8E+02 0.0038 28.1 9.8 89 65-156 29-118 (133)
120 KOG1451 Oligophrenin-1 and rel 47.4 50 0.0011 38.9 7.0 106 40-152 259-366 (812)
121 cd01262 PH_PDK1 3-Phosphoinosi 45.9 49 0.0011 29.8 5.4 75 59-152 10-87 (89)
122 KOG4424 Predicted Rho/Rac guan 45.2 51 0.0011 38.7 6.7 96 46-154 272-370 (623)
123 KOG1117 Rho- and Arf-GTPase ac 44.0 31 0.00068 42.1 4.9 81 63-152 1049-1130(1186)
124 COG3427 Carbon monoxide dehydr 42.7 2.2E+02 0.0048 27.9 9.7 42 261-307 3-44 (146)
125 cd01240 PH_beta-ARK Beta adren 42.6 77 0.0017 29.8 6.2 102 46-161 3-106 (116)
126 KOG0521 Putative GTPase activa 41.7 23 0.00049 43.3 3.5 97 48-156 274-371 (785)
127 KOG3751 Growth factor receptor 40.0 87 0.0019 36.5 7.4 109 43-154 314-425 (622)
128 KOG1739 Serine/threonine prote 39.8 33 0.00071 39.5 4.1 92 48-154 20-117 (611)
129 KOG1264 Phospholipase C [Lipid 36.3 52 0.0011 40.2 5.1 47 114-160 871-917 (1267)
130 cd00837 EVH1 EVH1 (Enabled, Va 34.0 1.4E+02 0.0031 27.0 6.7 80 72-153 4-104 (104)
131 KOG1117 Rho- and Arf-GTPase ac 32.4 93 0.002 38.4 6.3 97 48-152 494-600 (1186)
132 KOG1737 Oxysterol-binding prot 31.6 60 0.0013 39.7 4.8 41 44-87 75-115 (799)
133 PTZ00283 serine/threonine prot 30.4 55 0.0012 37.4 4.1 40 112-153 450-489 (496)
134 COG3832 Uncharacterized conser 29.5 5E+02 0.011 24.8 10.0 32 258-291 7-38 (149)
135 KOG3723 PH domain protein Melt 29.1 44 0.00096 39.2 3.0 98 56-161 746-844 (851)
136 COG5637 Predicted integral mem 28.6 46 0.001 33.8 2.7 132 262-430 73-210 (217)
137 cd08893 SRPBCC_CalC_Aha1-like_ 27.8 54 0.0012 29.5 2.9 29 262-292 3-31 (136)
138 cd01228 PH_BCR-related BCR (br 25.7 63 0.0014 29.5 2.7 81 48-152 5-93 (96)
139 cd08899 SRPBCC_CalC_Aha1-like_ 25.3 68 0.0015 30.6 3.2 31 259-291 11-41 (157)
140 PF15405 PH_5: Pleckstrin homo 24.3 1.3E+02 0.0027 28.9 4.7 41 112-152 94-134 (135)
141 cd01207 Ena-Vasp Enabled-VASP- 23.5 1.6E+02 0.0035 27.6 5.1 47 108-154 49-108 (111)
142 cd08898 SRPBCC_CalC_Aha1-like_ 23.0 77 0.0017 28.9 3.0 30 261-292 3-32 (145)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=2.4e-153 Score=1284.66 Aligned_cols=585 Identities=29% Similarity=0.505 Sum_probs=511.2
Q ss_pred CcceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEE
Q 005902 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (671)
Q Consensus 44 ~~~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~y 123 (671)
+.+.|||||||||+||||++|||+|||||+|++|+||||+|.++ ++|||||+||+||||||+|||+|||++||||+||
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~--~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Y 79 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY 79 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc--cccceeeccCCCceEeecCceEEcCceEEEEEEe
Confidence 46779999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCCCccccccc-------cccCCCCc
Q 005902 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGG-------------SARNKLNMETE-------INLDGHRP 183 (671)
Q Consensus 124 n~~~~~~~~~laa~~~eea~~W~~a~~~a~~~~~~~~~~~~-------------~~~~~~~~~~~-------~~~~~~~~ 183 (671)
|+++|++|++|||+|+|||++||+||++|++|++......+ .+++.++++.+ .+.+++++
T Consensus 80 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (719)
T PLN00188 80 NKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRD 159 (719)
T ss_pred cCCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCcc
Confidence 99999999999999999999999999999998754433221 22333444443 23344554
Q ss_pred ccccccccceEEeeecCCCCCcccCCCCCCCCccCcCCCCCcccccccCCCCEEEEEeCCEEEEEEecCCC---CCcccE
Q 005902 184 RVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSK---SGRGVL 260 (671)
Q Consensus 184 ~~~~~~~~~~~l~~~g~~~~~~~~~w~~~~~~~~~~l~~~~~~~~~~a~sgW~l~~~kngVrVy~~~~~~~---~~~~~~ 260 (671)
+.|++|||+|||++.++|+..... +++|+++++++++.+.|++++|+||+|||++..+.. .+.+++
T Consensus 160 --------~~r~~tig~gp~~s~~~~t~~~~~---~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~~~~~ 228 (719)
T PLN00188 160 --------LLRRTTIGNGPPDSVLDWTKEFDS---ELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRA 228 (719)
T ss_pred --------cceeeeccCCCcchhcccccccCc---cccccCCCccccccCCeEEEEeeccceeehhhhccccccccCCce
Confidence 677779999999999999996665 888999999999999999999999999999987764 556799
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCc
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGs 340 (671)
||++|+|+++|++||++||+++. .|.+||.++.++++||+||+||+|+|.++++.|+|++++|||||++|+|++++||+
T Consensus 229 mKavGVV~aspE~Ifd~Vm~~~~-~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGs 307 (719)
T PLN00188 229 MKAVGVVEATCEEIFELVMSMDG-TRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 307 (719)
T ss_pred eEEEEEecCCHHHHHHHHhccCc-ccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCc
Confidence 99999999999999999999987 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCccccccccccchhhhHHHHHHH
Q 005902 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (671)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~ 420 (671)
|+|+++||+||.|||++|||||++++|||+|.|++++ ++.++|+|+|++|+|+|||+ ++|+++++++++++||++
T Consensus 308 Yvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~--~g~~r~lv~~~lqtDlkGW~---~~y~~s~~~~~~l~mL~~ 382 (719)
T PLN00188 308 YVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPR--NGRPRTQVQHLMQIDLKGWG---VGYIPSFQQHCLLQMLNS 382 (719)
T ss_pred EEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCC--CCCCceEEEEEEEEccCccc---cccCccccccchHHHHHH
Confidence 9999999999999999999999999999999999873 45689999999999999999 899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccceeeeccccccCCCCC--------CccchhhhhhhhcccccCCCCCCCCCCCCCCC-CCch
Q 005902 421 VAGLKEYIGANPALKNESATVVVHSKFSDVSSSNG--------YYEDVEVQEQFYDAIAADSSSSEDEDSDDSND-PDKK 491 (671)
Q Consensus 421 Va~LRe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~f~~~~~~~~~~~~~e~~~~~~~-~~~~ 491 (671)
||+|||||+++++.++.+|++++.+++....+++. +..+.+..++|+++. ++|++|+||+ ++++
T Consensus 383 VAgLrE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~dE~~~~~e 455 (719)
T PLN00188 383 VAGLREWFSQTDERGAPPRIPVMVNMASASVSSKKNQKPQESSPSLDQTNAASRNSVM-------MDEDSDDDEEFQIPE 455 (719)
T ss_pred HHHHHHHHhcCcccCccccceeecccccccccccccccccccccccccccccchhhhh-------hccccccchhccCCC
Confidence 99999999999999999999999988665322211 122223445666554 3333444433 4443
Q ss_pred hhhhhhcchhhHHHhhhhhccCCCCcCcccCCCCCCCccCCCccccccccCCCCCCCCcccCCCCCceeeeCCCCcccCc
Q 005902 492 DKKVKLKNVSWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNA 571 (671)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~Ws~pd~~~F~VRG~~Yl~dk~ 571 (671)
.+++..+.++ .+ . ....++.+++.||+++|+|+|++++++++.|||++|++++|+|||+|||+||+
T Consensus 456 ~~~~~~~~k~-----------~~--~-~~~~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG~~Yl~Dk~ 521 (719)
T PLN00188 456 SEQEPETTKN-----------ET--K-DTAMEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRSKNFCYDKS 521 (719)
T ss_pred cccccccccc-----------cc--c-ccccccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcCCCcccCCc
Confidence 3322111110 00 0 11236678999999999999999999999999999999999999999999999
Q ss_pred cccCCccCcceeeeeEEecCcccchhhcCCCcchhccccCCCCeEEEEEEEeCCCCCeEEEEEEeecCCCCcchhhhhhh
Q 005902 572 KVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFV 651 (671)
Q Consensus 572 Kvpa~~~l~~lvgvD~f~s~~r~dhIa~~~~~~vq~~~~~~~pf~fiVNlqvPg~p~~SlV~Yf~~~~~l~~~~Ll~~F~ 651 (671)
|||||++||+|+|||||++++|+||||+||+|++|.+.++ .||+|||||||||+|+|||||||++ +++++++||+||+
T Consensus 522 KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k-~~F~fiVNlQvPg~~~ys~V~Yf~~-~~l~~~sLl~rF~ 599 (719)
T PLN00188 522 KIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK-GLFSFVVNLQVPGSTHYSMVFYFVT-KELVPGSLLQRFV 599 (719)
T ss_pred cccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc-CCcEEEEEEEccCCCceEEEEEEec-cCCCCchHHHHhc
Confidence 9999999999999999999999999999999999997554 5799999999999999999999999 5689999999999
Q ss_pred cCCccccccceeecccccc
Q 005902 652 DGTDMFRDARFKLIPSIAE 670 (671)
Q Consensus 652 ~gdD~fRn~RfKLIp~Iv~ 670 (671)
+|||+|||+||||||+|+|
T Consensus 600 ~GDD~fRnsRfKLIP~Iv~ 618 (719)
T PLN00188 600 DGDDEFRNSRLKLIPSVPK 618 (719)
T ss_pred cCchhHhhCceEEeccccC
Confidence 9999999999999999987
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=7.2e-39 Score=325.35 Aligned_cols=120 Identities=47% Similarity=0.897 Sum_probs=116.6
Q ss_pred ccCCCCCceeeeCCCCcccCccccCCccCcceeeeeEEecCcccchhhcCCCcchhccccCCCCeEEEEEEEeCC-----
Q 005902 551 WTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPG----- 625 (671)
Q Consensus 551 Ws~pd~~~F~VRG~~Yl~dk~Kvpa~~~l~~lvgvD~f~s~~r~dhIa~~~~~~vq~~~~~~~pf~fiVNlqvPg----- 625 (671)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|+.++++...+++.||+|||||||||
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~~ 80 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPSM 80 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred -----CCCeEEEEEEeecCCCCc------chhhhhhhcCC---ccccccceeecccccc
Q 005902 626 -----KPNYSLVLYYASERPVNK------NSLLGKFVDGT---DMFRDARFKLIPSIAE 670 (671)
Q Consensus 626 -----~p~~SlV~Yf~~~~~l~~------~~Ll~~F~~gd---D~fRn~RfKLIp~Iv~ 670 (671)
.|+||+|+||++++++.. .+||+||++|| |+|||+||||||+|++
T Consensus 81 f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~ 139 (227)
T PF07059_consen 81 FGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVN 139 (227)
T ss_pred ccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcC
Confidence 999999999999998876 79999999999 9999999999999986
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=4.4e-36 Score=300.76 Aligned_cols=184 Identities=20% Similarity=0.218 Sum_probs=165.8
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEE
Q 005902 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (671)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY 310 (671)
..+||++.+.++|+.||++... ...+.++|++|+|+++|++||+++.+.+. |.+||+++.++++||+||+||+|+|
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~--~~~gkl~k~egvi~~~~e~v~~~l~~~e~--r~~Wd~~~~~~~iie~Id~~T~I~~ 95 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSR--KYHGNLYRVEGIIPESPAKLIQFMYQPEH--RIKWDKSLQVYKMLQRIDSDTFICH 95 (204)
T ss_pred cccCCeEEecCCceEEEEEEcC--CCCceEEEEEEEecCCHHHHHHHHhccch--hhhhcccccceeeEEEeCCCcEEEE
Confidence 3589999999999999999652 24569999999999999999999998764 9999999999999999999999999
Q ss_pred EEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEE
Q 005902 311 GTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQM 390 (671)
Q Consensus 311 ~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I 390 (671)
.++++.. .+.++|||||.+|+|++.+++.|++++.||+||+|||++|||||+++++||+|+|+++ ++++|+++|+
T Consensus 96 ~~~~~~~-~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~----~p~~t~l~~~ 170 (204)
T cd08904 96 TITQSFA-MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE----NPAYSKLVMF 170 (204)
T ss_pred Eeccccc-CCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC----CCCceEEEEE
Confidence 9988743 2469999999999999977789999999999999999999999999999999999987 4678999999
Q ss_pred EeeecCCCccccccccccchhhhHHHHHHHHHHHHHHH
Q 005902 391 LEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (671)
Q Consensus 391 ~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~ 428 (671)
+|+|||||+ |.+ .+++.|...|++++..|++-+
T Consensus 171 ~~~DlkG~l---P~~--vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNL---SRS--VIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCC---CHH--HHHHHhHHHHHHHHHHHHHhc
Confidence 999999999 766 578899999999999998754
No 4
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=2.3e-34 Score=292.87 Aligned_cols=180 Identities=15% Similarity=0.171 Sum_probs=163.6
Q ss_pred CCCcccCCCCCCCCccCcCCCCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH
Q 005902 202 PETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL 279 (671)
Q Consensus 202 ~~~~~~~w~~~~~~~~~~l~~~~~~--~~~~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~ 279 (671)
-..+++|||++||+ ||||+|++ +.+++..+|++.++++||+||+++ + +.-..+|+++++++|++++|++|.
T Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~---s~~l~fk~e~~vdvs~~~l~~LL~ 98 (236)
T cd08914 26 EVPLCIHWDIGNQA---SLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E---HDVLSVWVEKHVKRPAHLAYRLLS 98 (236)
T ss_pred cCceecccCCCceE---EEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C---CCcEEEEEEEEEcCCHHHHHHHHh
Confidence 45699999999999 99999999 778889999999999999999995 2 223689999999999999999999
Q ss_pred ccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcC-CCc-EEEEEeeccCCCCCCCC
Q 005902 280 NLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGT-YTILQFPAVHKKRPPKS 357 (671)
Q Consensus 280 d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~-dGs-YvIa~~SV~Hp~~Pp~~ 357 (671)
|++. |++||.++.++++|+++|++.+ +|++.+|.|. ++++||||++++|++.. +|. |+|..+||.||.+||.+
T Consensus 99 D~~~--r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~--Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~k 173 (236)
T cd08914 99 DFTK--RPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVN--NDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSP 173 (236)
T ss_pred Chhh--hchhHHhhceEEEEEEeCCCcC-EEEEecCCCC--CCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCC
Confidence 9997 9999999999999999999988 6777776552 58999999999998765 775 99999999999999999
Q ss_pred CeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCcc
Q 005902 358 GYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR 400 (671)
Q Consensus 358 g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~ 400 (671)
||||++.+++||+|+|+++ ++|+|||++|+|| ||+|
T Consensus 174 g~VRv~~~~~G~~I~pl~~------~~~~VtY~~~~dP-g~lp 209 (236)
T cd08914 174 QYIRSEIICAGFLIHAIDS------NSCTVSYFNQISA-SILP 209 (236)
T ss_pred CcEEeEEEEEEEEEEEcCC------CcEEEEEEEEcCC-ccch
Confidence 9999999999999999876 7899999999999 9994
No 5
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=1.2e-33 Score=287.93 Aligned_cols=181 Identities=14% Similarity=0.110 Sum_probs=161.5
Q ss_pred ecCCCCCcccCCCCCCCCccCcCCCCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHH
Q 005902 198 IGHGPETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF 275 (671)
Q Consensus 198 ~g~~~~~~~~~w~~~~~~~~~~l~~~~~~--~~~~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vf 275 (671)
+-+.-..+|++||++||+ ||||+|++ +.+.+.+||++.++++||+||+++. +.-..+|++++|+++++++|
T Consensus 21 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~----s~~l~fk~e~~vd~s~~~v~ 93 (235)
T cd08873 21 SLQREVPLSVAWDRSNQM---YLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ----DGVLSFCVELKVQTCASDAF 93 (235)
T ss_pred ecCccCceEcccCccccE---EEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC----CCceEEEEEEEecCCHHHHH
Confidence 334456699999999999 99999999 8899999999999999999999963 33367999999999999999
Q ss_pred HHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEc-CC-CcEEEEEeeccCCCC
Q 005902 276 EVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QD-GTYTILQFPAVHKKR 353 (671)
Q Consensus 276 e~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~-~d-GsYvIa~~SV~Hp~~ 353 (671)
++|.|.+. |++||.++.++++|+++|++..|+|.++.+ |+++++||||++++|++. ++ +.|+|+.+||.||.+
T Consensus 94 dlL~D~~~--R~~WD~~~~e~evI~~id~d~~iyy~~~p~---PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~ 168 (235)
T cd08873 94 DLLSDPFK--RPEWDPHGRSCEEVKRVGEDDGIYHTTMPS---LTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRV 168 (235)
T ss_pred HHHhCcch--hhhhhhcccEEEEEEEeCCCcEEEEEEcCC---CCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccC
Confidence 99999996 999999999999999999987777766554 346999999999999983 33 469999999999999
Q ss_pred CCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecC
Q 005902 354 PPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSS 396 (671)
Q Consensus 354 Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlK 396 (671)
||++|||||+..++||+|+|+++ ++|.|||++|+||+
T Consensus 169 Pp~kgyVR~~~~~ggW~I~p~~~------~~t~VtY~~~~dPg 205 (235)
T cd08873 169 PQTPGYSRTEVACAGFVIRQDCG------TCTEVSYYNETNPK 205 (235)
T ss_pred CCCCCeEEEEEEeeeEEEEECCC------CcEEEEEEEEcCCC
Confidence 99999999999999999999875 68999999999994
No 6
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=2.8e-33 Score=286.68 Aligned_cols=181 Identities=19% Similarity=0.203 Sum_probs=162.6
Q ss_pred CCCcccCCCCCCCCccCcCCCCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH
Q 005902 202 PETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL 279 (671)
Q Consensus 202 ~~~~~~~w~~~~~~~~~~l~~~~~~--~~~~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~ 279 (671)
-..+|+|||++||+ ||||+|++ +.+.++++|++.++++||+||+++. +....+|++++|++++++||++|.
T Consensus 29 ~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~----s~~~~fK~e~~vd~s~e~v~~lL~ 101 (240)
T cd08913 29 EVPLSVPWDPSNQV---YLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEE----DKFLSFKVEMVVHVDAAQAFLLLS 101 (240)
T ss_pred cCceecccCcccee---EEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeC----CCccEEEEEEEEcCCHHHHHHHHh
Confidence 45699999999999 99999999 8899999999999999999999753 333688999999999999999999
Q ss_pred ccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEc-CCC-cEEEEEeeccCCCCCCCC
Q 005902 280 NLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG-TYTILQFPAVHKKRPPKS 357 (671)
Q Consensus 280 d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~-~dG-sYvIa~~SV~Hp~~Pp~~ 357 (671)
|.+. |++||.++.++++|+++|++. .+|++..+.| ++++++||||++++|++. ++| .|+|+.+||.||++||++
T Consensus 102 D~~~--r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~k 177 (240)
T cd08913 102 DLRR--RPEWDKHYRSCELVQQVDEDD-AIYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTP 177 (240)
T ss_pred Chhh--hhhhHhhccEEEEEEecCCCc-EEEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCC
Confidence 9996 999999999999999999985 5787777765 468999999999999874 333 799999999999999999
Q ss_pred CeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCcc
Q 005902 358 GYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR 400 (671)
Q Consensus 358 g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~ 400 (671)
|||||+..++||+|.|.++ +.|+|||+.++|+ |++|
T Consensus 178 gyVR~~~~~ggw~i~p~~~------~~t~vtY~~~~dP-G~LP 213 (240)
T cd08913 178 EYTRGETLCSGFCIWEESD------QLTKVSYYNQATP-GVLP 213 (240)
T ss_pred CcEEeeecccEEEEEECCC------CcEEEEEEEEeCC-cccc
Confidence 9999999999999999875 6899999999998 5883
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=1.2e-32 Score=275.48 Aligned_cols=186 Identities=23% Similarity=0.398 Sum_probs=163.2
Q ss_pred cccCCCCEEEEEeC-CEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH-ccCCcccccccCCCCceEEEEeecCce
Q 005902 229 AIEAHEWKCVRTLN-GVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHY 306 (671)
Q Consensus 229 ~~a~sgW~l~~~kn-gVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~-d~~~~~R~eWD~~~~~~eVVE~lD~~t 306 (671)
+....||++...++ ||+||++..+. .++++|++++|+++|++||+.|+ |.+. |++||+++.++++|+++|+++
T Consensus 20 ~~~~~~W~l~~~~~~~i~i~~r~~~~---~~~~~k~~~~i~~~~~~v~~~l~~d~~~--~~~Wd~~~~~~~~i~~~d~~~ 94 (208)
T cd08868 20 ILTDPGWKLEKNTTWGDVVYSRNVPG---VGKVFRLTGVLDCPAEFLYNELVLNVES--LPSWNPTVLECKIIQVIDDNT 94 (208)
T ss_pred HhcCCCceEEEecCCCCEEEEEEcCC---CceEEEEEEEEcCCHHHHHHHHHcCccc--cceecCcccceEEEEEecCCc
Confidence 34456999999997 99999997643 34789999999999999998665 6664 999999999999999999999
Q ss_pred EEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 005902 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (671)
Q Consensus 307 DIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~ 386 (671)
+|+|+++++. +|+++++||||++|+|++.+ +.|+|+..|+.||.+|+++|+|||+...+||+|+|+++ ++++|.
T Consensus 95 ~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~----~~~~t~ 168 (208)
T cd08868 95 DISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN----NPNKCN 168 (208)
T ss_pred EEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC----CCCceE
Confidence 9999988875 34689999999999999876 57999999999999999999999999999999999975 457899
Q ss_pred EEEEEeeecCCCccccccccccchhhhHHHHHHHHHHHHHHHhc
Q 005902 387 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (671)
Q Consensus 387 VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~ 430 (671)
|+|++++|||||+ |.| .+...+...++..+.+||++++.
T Consensus 169 v~~~~~~Dp~G~i---P~~--lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 169 FTWLLNTDLKGWL---PQY--LVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEEECCCCCC---cce--eeehhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999 666 35666777788899999999864
No 8
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=4.4e-33 Score=276.61 Aligned_cols=179 Identities=15% Similarity=0.189 Sum_probs=157.5
Q ss_pred ccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHH-HHHHHHccCCcccccccCCCCceEEEEeecCceEE
Q 005902 230 IEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADT-VFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDV 308 (671)
Q Consensus 230 ~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~-Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDI 308 (671)
....||.....++++.|+.+..+ .+..-.++|+...|+++|.+ ++++|.+ |+.||.++.+.++||+||+++||
T Consensus 24 ek~kgW~~~~~~~~vev~~kk~~-d~~~l~lwk~s~ei~~~p~~vl~rvL~d-----R~~WD~~m~e~~~Ie~Ld~n~dI 97 (205)
T cd08907 24 ERFKGWHSAPGPDNTELACKKVG-DGHPLRLWKVSTEVEAPPSVVLQRVLRE-----RHLWDEDLLHSQVIEALENNTEV 97 (205)
T ss_pred hccCCceeecCCCCcEEEEEeCC-CCCceEEEEEEEEecCCCHHHHHHHhhc-----hhhhhHHHHhhhhheeecCCCEE
Confidence 34679999999999999887443 24555799999999885555 4566654 99999999999999999999999
Q ss_pred EEEEecCCcCCCCCCCCeEEEEEEEEEc-CCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEE
Q 005902 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 387 (671)
Q Consensus 309 vY~~~kp~~~P~~vspRDFV~LRswRr~-~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~V 387 (671)
+||+++.+ .++++||||++|+|+.. +.|.|+|+++||+|++.||.+| |||.++.+||+|+|+++ ++|+|
T Consensus 98 ~yY~~~~~---~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~------g~s~l 167 (205)
T cd08907 98 YHYVTDSM---APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGM------GRSRL 167 (205)
T ss_pred EEEEecCC---CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCC------CCeEE
Confidence 99999853 47999999999999864 6678999999999999999999 99999999999999985 78999
Q ss_pred EEEEeeecCCCccccccccccchhhhHHHHHHHHHHHHHHHhc
Q 005902 388 TQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (671)
Q Consensus 388 T~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~ 430 (671)
|||+++|+|||+ |.|+++..++++++ .+..||+.|..
T Consensus 168 tyi~rvD~rG~~---P~Wynk~~g~~~a~---~l~~ir~sF~~ 204 (205)
T cd08907 168 THICRADLRGRS---PDWYNKVFGHLCAM---EVARIRDSFPT 204 (205)
T ss_pred EEEEEeCCCCCC---cHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 999999999999 89999999999977 88999999864
No 9
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=1e-32 Score=276.35 Aligned_cols=177 Identities=18% Similarity=0.214 Sum_probs=152.6
Q ss_pred CCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEE
Q 005902 233 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 312 (671)
Q Consensus 233 sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~ 312 (671)
.||..+...|++.++-+... .++.-+++|++++|+++|++|+..|.+ +|++||.++.++++||+||+|+||+|++
T Consensus 27 k~w~~~~~~~~~e~~ykK~~-d~~~lk~~r~~~ei~~~p~~VL~~vl~----~R~~WD~~~~~~~~ie~ld~~tdi~~y~ 101 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVG-DGNPLRLWKVSVEVEAPPSVVLNRVLR----ERHLWDEDFLQWKVVETLDKQTEVYQYV 101 (205)
T ss_pred cCCcccCCcCCeEEEEecCC-CCCceEEEEEEEEeCCCHHHHHHHHHh----hHhhHHhhcceeEEEEEeCCCcEEEEEE
Confidence 45555555555555333221 234557999999999999999888865 4999999999999999999999999999
Q ss_pred ecCCcCCCCCCCCeEEEEEEEEEc-CCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEE
Q 005902 313 YDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML 391 (671)
Q Consensus 313 ~kp~~~P~~vspRDFV~LRswRr~-~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~ 391 (671)
+++++ ++++||||++|+|+++ ++|+|+|+++||+|+++||. |+|||.++.+||+|+|+++ ++|+||||+
T Consensus 102 ~~~~~---P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~------g~trvt~i~ 171 (205)
T cd08909 102 LNCMA---PHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGS------GKSRLTHIC 171 (205)
T ss_pred eecCC---CCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCC------CCEEEEEEE
Confidence 99753 5899999999999986 68999999999999999996 9999999999999999986 589999999
Q ss_pred eeecCCCccccccccccchhhhHHHHHHHHHHHHHHHhc
Q 005902 392 EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (671)
Q Consensus 392 qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~ 430 (671)
++|||||+ |.|+++..+|++++ .+.+||+.|..
T Consensus 172 ~vDpkG~~---P~W~~n~~g~~~~~---~~~~~r~sf~~ 204 (205)
T cd08909 172 RVDLKGHS---PEWYNKGFGHLCAA---EAARIRNSFQP 204 (205)
T ss_pred EecCCCCC---hHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 99999999 89999999999977 88999999863
No 10
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=2.3e-32 Score=274.82 Aligned_cols=188 Identities=20% Similarity=0.271 Sum_probs=164.0
Q ss_pred cccccCCCCEEEEE-eCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHH-HHHHccCCcccccccCCCCceEEEEeecC
Q 005902 227 GDAIEAHEWKCVRT-LNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 304 (671)
Q Consensus 227 ~~~~a~sgW~l~~~-kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vf-e~L~d~~~~~R~eWD~~~~~~eVVE~lD~ 304 (671)
..+.+.+||++... +|||+||++..+ ..+..+|++++|++|++++| ++|.|.+. |++||.++.++++|+++|+
T Consensus 19 ~~l~~~~~W~l~~~~~~gi~V~s~~~~---~~~~~fk~~~~v~~~~~~l~~~ll~D~~~--~~~W~~~~~~~~vi~~~~~ 93 (209)
T cd08906 19 QILAQEENWKFEKNNDNGDTVYTLEVP---FHGKTFILKAFMQCPAELVYQEVILQPEK--MVLWNKTVSACQVLQRVDD 93 (209)
T ss_pred HHhhcccCCEEEEecCCCCEEEEeccC---CCCcEEEEEEEEcCCHHHHHHHHHhChhh--ccccCccchhhhheeeccC
Confidence 45667889999876 499999997553 22388999999999999998 57899886 9999999999999999999
Q ss_pred ceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCc
Q 005902 305 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 384 (671)
Q Consensus 305 ~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~ 384 (671)
+++|+|.+..| |.++++++||||++|+|++.+++ |+++..|+.|+.+||++|||||+++++||+|.|.+. ++++
T Consensus 94 ~~~i~Y~v~~p-~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~----~~~~ 167 (209)
T cd08906 94 NTLVSYDVAAG-AAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS----NPSV 167 (209)
T ss_pred CcEEEEEEccc-cccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC----CCCc
Confidence 99999955444 44568999999999999998776 999999999999999999999999999999999743 3478
Q ss_pred eEEEEEEeeecCCCccccccccccchhhhHHHHHHHHHHHHHHHhc
Q 005902 385 CLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (671)
Q Consensus 385 c~VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~ 430 (671)
|+|||++|+|||||+ |.| .+++.+.-.++.++.+||+.++.
T Consensus 168 t~vt~~~~~Dp~G~l---P~~--lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 168 CTFIWILNTDLKGRL---PRY--LIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred eEEEEEEecCCCCCC---CHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 666 56778888889999999999864
No 11
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=2.2e-32 Score=271.12 Aligned_cols=182 Identities=20% Similarity=0.300 Sum_probs=164.3
Q ss_pred ccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEE
Q 005902 230 IEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (671)
Q Consensus 230 ~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIv 309 (671)
...++|++.+.++|+.||++... .+.++++|++|+|+..+++|++.|.+... |.+||+++.++++||+||++|.|+
T Consensus 20 ~~~~~Wkl~k~~~~~~v~~k~~~--ef~gkl~R~Egvv~~~~~ev~d~v~~~~~--r~~Wd~~v~~~~Iie~Id~dt~I~ 95 (202)
T cd08902 20 ILEEEWRVAKKSKDVTVWRKPSE--EFGGYLYKAQGVVEDVYNRIVDHIRPGPY--RLDWDSLMTSMDIIEEFEENCCVM 95 (202)
T ss_pred ccccCcEEEEeCCCEEEEEecCC--cCCCceEEEEEEecCCHHHHHHHHhcccc--hhcccchhhheeHhhhhcCCcEEE
Confidence 46789999999999999999663 36789999999999999999999998775 999999999999999999999999
Q ss_pred EEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEE
Q 005902 310 YGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 389 (671)
Q Consensus 310 Y~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~ 389 (671)
|+++... +.+.++|||||.+|++.+.+|| |+.+..|++|+..|| |||||+++++||++.|+++ ++++|.+||
T Consensus 96 ~yvt~~~-~~~iISpRDFVdv~~~~~~~d~-~~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~----~p~k~~~t~ 167 (202)
T cd08902 96 RYTTAGQ-LLNIISPREFVDFSYTTQYEDG-LLSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKD----NPSHSLLTG 167 (202)
T ss_pred EEEcccC-CcCccCccceEEEEEEEEeCCC-eEEEEeeecCCCCCC--CeEeecccccEEEEEECCC----CCCceEEEE
Confidence 7665543 3478999999999999999888 578899999998887 9999999999999999997 578999999
Q ss_pred EEeeecCCCccccccccccchhhhHHHHHHHHHHHHHHH
Q 005902 390 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (671)
Q Consensus 390 I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~ 428 (671)
++|+|+|||+ |+. .+++.|...|+++...||..+
T Consensus 168 ~lq~DLkG~L---Pqs--iIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 168 YIQTDLRGML---PQS--AVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEecCCCCc---cHH--HHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999 654 789999999999999999876
No 12
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=5.6e-32 Score=269.45 Aligned_cols=178 Identities=18% Similarity=0.232 Sum_probs=157.0
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEE
Q 005902 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (671)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY 310 (671)
...||++...++||+||.+..+. .+..+++|++++|+++|++|++.|++ .|.+||.++.++++|+++|++++|+|
T Consensus 17 ~~~~W~~~~~~~gi~I~~k~~~~-~~~l~~~K~~~~v~a~~~~v~~~l~d----~r~~Wd~~~~~~~vie~id~~~~i~y 91 (197)
T cd08869 17 KSKGWVSVSSSDHVELAFKKVDD-GHPLRLWRASTEVEAPPEEVLQRILR----ERHLWDDDLLQWKVVETLDEDTEVYQ 91 (197)
T ss_pred ccCCceEEecCCcEEEEEEeCCC-CCcEEEEEEEEEeCCCHHHHHHHHHH----HHhccchhhheEEEEEEecCCcEEEE
Confidence 36899999999999999996642 23568899999999999999999986 49999999999999999999999999
Q ss_pred EEecCCcCCCCCCCCeEEEEEEEEE-cCCCcEEEEEeeccCC-CCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEE
Q 005902 311 GTYDPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 388 (671)
Q Consensus 311 ~~~kp~~~P~~vspRDFV~LRswRr-~~dGsYvIa~~SV~Hp-~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT 388 (671)
+++++.| ++++||||++|+|+. .++|.|+|+++||.|| .+|+ |||||..+++||+|+|+++ ++|+||
T Consensus 92 ~~~~~p~---pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~------~~t~vt 160 (197)
T cd08869 92 YVTNSMA---PHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGS------GKSRVT 160 (197)
T ss_pred EEeeCCC---CCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCC------CCeEEE
Confidence 9988754 689999999999987 4678999999999996 5666 9999999999999999875 689999
Q ss_pred EEEeeecCCCccccccccccchhhhHHHHHHHHHHHHHHHhc
Q 005902 389 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (671)
Q Consensus 389 ~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~ 430 (671)
|++++||+||+ |.|+++..++++.. .|..||+.|.+
T Consensus 161 y~~~~Dp~G~i---P~wl~N~~~~~~~~---~~~~l~~~~~~ 196 (197)
T cd08869 161 HICRVDLRGRS---PEWYNKVYGHLCAR---ELLRIRDSFRQ 196 (197)
T ss_pred EEEEECCCCCC---CceeecchHhHHHH---HHHHHHhhccC
Confidence 99999999999 87877777777765 77899999865
No 13
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=100.00 E-value=8.1e-32 Score=269.10 Aligned_cols=183 Identities=20% Similarity=0.244 Sum_probs=160.3
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHc--cCCcccccccCCCCceEEEEeecCceEEE
Q 005902 232 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLN--LERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (671)
Q Consensus 232 ~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d--~~~~~R~eWD~~~~~~eVVE~lD~~tDIv 309 (671)
..+|++.+.++|++||++... ...+.++|+++.|++++++|+++|.+ .. .|.+||.++.++++|+++|++++|+
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~--~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~--~r~~Wd~~~~~~~~le~id~~~~i~ 96 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPST--EFTGHLYRAEGIVDALPEKVIDVIIPPCGG--LRLKWDKSLKHYEVLEKISEDLCVG 96 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCC--CCCCEEEEEEEEEcCCHHHHHHHHHhcCcc--ccccccccccceEEEEEeCCCeEEE
Confidence 479999999999999998432 23447899999999999999999998 44 5999999999999999999999999
Q ss_pred EEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEE
Q 005902 310 YGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 389 (671)
Q Consensus 310 Y~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~ 389 (671)
|+...... .+++++||||++++|++.++|.|+++..||+||.+||.+|||||++..+||+|+|+++ ++++|.+||
T Consensus 97 ~~~~p~~~-~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~----~~~~t~~~~ 171 (206)
T cd08867 97 RTITPSAA-MGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKG----SPDKSFLVL 171 (206)
T ss_pred EEEccccc-cCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCC----CCCceEEEE
Confidence 98544221 2469999999999999988889999999999999999999999999999999999875 347899999
Q ss_pred EEeeecCCCccccccccccchhhhHHHHHHHHHHHHHHH
Q 005902 390 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (671)
Q Consensus 390 I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~ 428 (671)
++++|||||+ |.| .+...+..+++..+..||.++
T Consensus 172 ~~~~DpkG~i---P~~--lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 172 YVQTDLRGMI---PQS--LVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEeccCCCC---cHH--HHHhhhhhhHHHHHHHHHHhc
Confidence 9999999999 666 466677788889999999876
No 14
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.98 E-value=2.6e-31 Score=266.88 Aligned_cols=188 Identities=21% Similarity=0.251 Sum_probs=160.7
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEE
Q 005902 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (671)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY 310 (671)
..+||++.+.+||++||++.... ..+..+|++++|++++++||++|+|.....|.+||.++.++++||++|+++.|+|
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~--~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~ 97 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE--FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCR 97 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC--CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEE
Confidence 46899999999999999985421 2335699999999999999999997643148999999999999999999999988
Q ss_pred EEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEE
Q 005902 311 GTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQM 390 (671)
Q Consensus 311 ~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I 390 (671)
..+ |..+.+++++||||++|+|++.+||+|++...|+.||.|||++|||||+..++||++.|++. ++++|.|+|+
T Consensus 98 ~~~-p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~----~~~~t~v~~~ 172 (208)
T cd08903 98 TVT-PSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG----EPDKTQLVSF 172 (208)
T ss_pred Eec-chhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC----CCCceEEEEE
Confidence 732 21112359999999999999999999999999999999999999999999999999999985 3578999999
Q ss_pred EeeecCCCccccccccccchhhhHHHHHHHHHHHHHHHhc
Q 005902 391 LEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (671)
Q Consensus 391 ~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~ 430 (671)
+++|||||+ |.| .+++.+...|..++.+||..++.
T Consensus 173 ~~~DpkG~i---P~~--lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 173 FQTDLSGYL---PQT--VVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEeccCCCc---CHH--HHHHHhhHHHHHHHHHHHHHHhh
Confidence 999999999 665 45667777888999999998853
No 15
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=5.5e-31 Score=264.31 Aligned_cols=194 Identities=15% Similarity=0.148 Sum_probs=163.5
Q ss_pred CCCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEE
Q 005902 221 FFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLEL 298 (671)
Q Consensus 221 ~~~~~~--~~~~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eV 298 (671)
.+.|++ +++.+.+||++.++++||+||+++.+. .-..+|++++|++++++|+++|.|... |++||.++.++++
T Consensus 8 ~~~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~---~~~~~~ge~~v~as~~~v~~ll~D~~~--r~~Wd~~~~~~~v 82 (205)
T cd08874 8 CSVNLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG---TYHGFLGAGVIKAPLATVWKAVKDPRT--RFLYDTMIKTARI 82 (205)
T ss_pred hhhhHHHHHhhhccCCcEEEecCCCEEEEEecCCC---CcceEEEEEEEcCCHHHHHHHHhCcch--hhhhHHhhhheee
Confidence 345666 789999999999999999999997542 336788999999999999999999996 9999999999999
Q ss_pred EEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCC-CeeeEEEcCeeEEEEecCCC
Q 005902 299 VDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKS-GYRRTKINPSTWEIRSLNLP 377 (671)
Q Consensus 299 VE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~-g~VRAev~~sGylI~P~~~~ 377 (671)
|+++|+++.|+|+++...| |..+++||||+++.|++.++ .|+|..+||.||.+||.+ |||||++++|||+|+|+..+
T Consensus 83 l~~~~~d~~i~y~~~~~Pw-p~~~~~RDfV~l~~~~~~~~-~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~ 160 (205)
T cd08874 83 HKTFTEDICLVYLVHETPL-CLLKQPRDFCCLQVEAKEGE-LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVE 160 (205)
T ss_pred eeecCCCeEEEEEEecCCC-CCCCCCCeEEEEEEEEECCC-cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccC
Confidence 9999999999998887555 55679999999999987655 577999999999999996 99999999999999999431
Q ss_pred CCCCCCceEEEEEEeeecC-CCccccccccccchhhhHHHHHHHHHHHHHHHhc
Q 005902 378 MGSNGAKCLVTQMLEIHSS-GWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (671)
Q Consensus 378 ~~~~~~~c~VT~I~qvDlK-Gw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~ 430 (671)
+.++|+|||++|+||+ |-+ |.|. .-..+......||.||.|+++
T Consensus 161 ---g~~~t~vty~~q~DPggg~i---P~~l---~N~~~~~~p~~~~~~~~~~~~ 205 (205)
T cd08874 161 ---GNQYTRVIYIAQVALCGPDV---PAQL---LSSLSKRQPLVIARLALFLEA 205 (205)
T ss_pred ---CCCcEEEEEEEEECCCCCCC---CHHH---HhHHHHhccHHHHHHHHHhhC
Confidence 2368999999999999 798 5442 112334556688999998864
No 16
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=3.8e-29 Score=252.56 Aligned_cols=170 Identities=22% Similarity=0.321 Sum_probs=148.2
Q ss_pred ccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCce
Q 005902 228 DAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 306 (671)
Q Consensus 228 ~~~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvV-daspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~t 306 (671)
.+....+|++..+++||+||++..+ .+...++|+++++ +++++.+|++|+|.+. |++||+++.++++|+++|+++
T Consensus 18 ~~~~~~~W~~~~~~~gi~iy~r~~~--~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~--r~~Wd~~~~e~~~ie~~d~~~ 93 (222)
T cd08871 18 LCDSTDGWKLKYNKNNVKVWTKNPE--NSSIKMIKVSAIFPDVPAETLYDVLHDPEY--RKTWDSNMIESFDICQLNPNN 93 (222)
T ss_pred HhcCCCCcEEEEcCCCeEEEEeeCC--CCceEEEEEEEEeCCCCHHHHHHHHHChhh--hhhhhhhhceeEEEEEcCCCC
Confidence 3445679999999999999999764 2555789999986 7899999999999875 999999999999999999999
Q ss_pred EEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 005902 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (671)
Q Consensus 307 DIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~ 386 (671)
+|+|++++.. +++++||||++|+|+..+ |.|+|+.+|+.||.+|+.+|+|||.+..+||+|+|+++ ++|.
T Consensus 94 ~i~y~~~~~P---~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~------~~t~ 163 (222)
T cd08871 94 DIGYYSAKCP---KPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP------KGCT 163 (222)
T ss_pred EEEEEEeECC---CCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC------CCEE
Confidence 9999998854 469999999999999876 78999999999999999999999999999999999875 6799
Q ss_pred EEEEEeeecCCCcccccccc-ccchhhhH
Q 005902 387 VTQMLEIHSSGWCRWKKNSS-TKFEKTTH 414 (671)
Q Consensus 387 VT~I~qvDlKGw~~w~p~~~-~~~~~~~~ 414 (671)
|||+.++||+||+ |.|+ +.+.....
T Consensus 164 vt~~~~~Dp~G~I---P~~lvN~~~~~~~ 189 (222)
T cd08871 164 LTYVTQNDPKGSL---PKWVVNKATTKLA 189 (222)
T ss_pred EEEEEecCCCCCc---CHHHHHHHHHHHh
Confidence 9999999999999 5442 44443333
No 17
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.97 E-value=2.4e-29 Score=252.84 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=158.3
Q ss_pred cCCCCEEEE-EeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH-ccCCcccccccCCCCceEEEEeecCceEE
Q 005902 231 EAHEWKCVR-TLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHYDV 308 (671)
Q Consensus 231 a~sgW~l~~-~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~-d~~~~~R~eWD~~~~~~eVVE~lD~~tDI 308 (671)
..+||++.+ .++|++||++..+. + ++++|++++|+++++++++.|+ |.+. +++||.++.++++|+++|++++|
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~--~-~k~~k~e~~i~~~~~~l~~~l~~d~e~--~~~W~~~~~~~~vl~~id~~~~i 97 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD--I-GKVFRLEVVVDQPLDNLYSELVDRMEQ--MGEWNPNVKEVKILQRIGKDTLI 97 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC--C-CcEEEEEEEecCCHHHHHHHHHhchhh--hceecccchHHHHHhhcCCCceE
Confidence 457999995 58999999986643 2 3899999999999999995555 6564 99999999999999999999999
Q ss_pred EEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEE
Q 005902 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 388 (671)
Q Consensus 309 vY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT 388 (671)
+|+...| |..+++++||||++|+|++.+ +.++++..|+.||.+||++|||||+...+||+|+|+++ ++++|+|+
T Consensus 98 ~y~~~~p-~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~----~~~~t~v~ 171 (209)
T cd08905 98 THEVAAE-TAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAG----DPSKTKLT 171 (209)
T ss_pred EEEEecc-CCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCC----CCCceEEE
Confidence 9985444 312459999999999999875 46888899999999999999999999999999999975 35789999
Q ss_pred EEEeeecCCCccccccccccchhhhHHHHHHHHHHHHHHHhc
Q 005902 389 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (671)
Q Consensus 389 ~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~ 430 (671)
|++++|||||+ |.| .+.+.+.-.++.++.+||+.+.+
T Consensus 172 ~~~~~DpkG~i---P~~--lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 172 WLLSIDLKGWL---PKS--IINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCC---CHH--HHHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999 666 46677788888999999999874
No 18
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=8.1e-29 Score=245.10 Aligned_cols=185 Identities=24% Similarity=0.293 Sum_probs=153.6
Q ss_pred cccccCCCCEEEEE-eCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHH-HHHHccCCcccccccCCCCceEEEEeecC
Q 005902 227 GDAIEAHEWKCVRT-LNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 304 (671)
Q Consensus 227 ~~~~a~sgW~l~~~-kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vf-e~L~d~~~~~R~eWD~~~~~~eVVE~lD~ 304 (671)
....+..+|++... ++|+.+|++..+. .+.+..+|++++|+++++++| +++.|++. |++||+++.++++||++++
T Consensus 13 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~--r~~Wd~~~~~~~~ie~~~~ 89 (206)
T smart00234 13 MAAASEPGWVLSSENENGDEVRSILSPG-RSPGEASRAVGVVPMVCADLVEELMDDLRY--RPEWDKNVAKAETLEVIDN 89 (206)
T ss_pred HhhCCCCccEEccccCCcceEEEEccCC-CCceEEEEEEEEEecChHHHHHHHHhcccc--hhhCchhcccEEEEEEECC
Confidence 34556789999997 8999999986532 245789999999999999755 67777775 9999999999999999999
Q ss_pred ceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCc
Q 005902 305 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 384 (671)
Q Consensus 305 ~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~ 384 (671)
+++|+|++++..| +++++||||++|+|+..++|.|+|+.+|+.||.+||.+|+|||++.++||+|+|+++ +.
T Consensus 90 ~~~i~~~~~~~~~--~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~------~~ 161 (206)
T smart00234 90 GTVIYHYVSKFVA--GPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN------GP 161 (206)
T ss_pred CCeEEEEEEeccc--CcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC------CC
Confidence 9999999888643 379999999999999988889999999999999999999999999999999999986 45
Q ss_pred eEEEEEEeeecCCCccccccc-cccchhhhHHHHHHHHHHHHHHH
Q 005902 385 CLVTQMLEIHSSGWCRWKKNS-STKFEKTTHFALLSQVAGLKEYI 428 (671)
Q Consensus 385 c~VT~I~qvDlKGw~~w~p~~-~~~~~~~~~~~mL~~Va~LRe~~ 428 (671)
|+|||+.|+|++||+ |.| .+.+....... .+..||..+
T Consensus 162 t~vt~~~~~D~~G~i---P~~lvn~~~~~~~~~---~~~~~~~~~ 200 (206)
T smart00234 162 SKVTWVSHADLKGWL---PHWLVRSLIKSGLAE---FAKTWVATL 200 (206)
T ss_pred eEEEEEEEEecCCCc---cceeehhhhhhhHHH---HHHHHHHHH
Confidence 999999999999999 544 34444444433 444445444
No 19
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.96 E-value=1.7e-27 Score=235.14 Aligned_cols=188 Identities=27% Similarity=0.442 Sum_probs=154.5
Q ss_pred cccCCCCEEEEEeCCEEEEEE-ecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceE
Q 005902 229 AIEAHEWKCVRTLNGVRIFED-VADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (671)
Q Consensus 229 ~~a~sgW~l~~~kngVrVy~~-~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tD 307 (671)
.....||++...+++..++.. ..+........+|+.++|+++++++|..|++.. . +||+++.++++||+++++++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~---~-~Wd~~~~~~~~le~~~~~~~ 90 (206)
T PF01852_consen 15 QEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDR---E-QWDKMCVEAEVLEQIDEDTD 90 (206)
T ss_dssp HHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGG---G-HHSTTEEEEEEEEEEETTEE
T ss_pred hcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhH---h-hcccchhhheeeeecCCCCe
Confidence 446789999996555554443 332222367899999999999999999998732 2 99999999999999999999
Q ss_pred EEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCC-CCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 005902 308 VVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPP-KSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (671)
Q Consensus 308 IvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp-~~g~VRAev~~sGylI~P~~~~~~~~~~~c~ 386 (671)
|+|.++++.| |+++++||||++|+|+...+|.|+|+.+||+||.+|+ .+|+|||++..+||+|+|+++ +.|+
T Consensus 91 i~~~~~~~~~-~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~------~~~~ 163 (206)
T PF01852_consen 91 IVYFVMKSPW-PGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD------GRTR 163 (206)
T ss_dssp EEEEEEE-CT-TTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT------CEEE
T ss_pred EEEEEecccC-CCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC------CCce
Confidence 9999999765 5589999999999999988899999999999999999 999999999999999999986 5599
Q ss_pred EEEEEeeecCCCccccccccccchhhhHHHHHHHHHHHHHHHhcCC
Q 005902 387 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 432 (671)
Q Consensus 387 VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~~~ 432 (671)
|||+.|+||+||+ |.| .+...+..++...+..||+.++...
T Consensus 164 vt~~~~~D~~G~i---P~~--~~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 164 VTYVSQVDPKGWI---PSW--LVNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEEEESSSSS---HHH--HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEECCCCCC---hHH--HHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 9999999999999 544 2333444456678888998887653
No 20
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.96 E-value=6.7e-28 Score=246.68 Aligned_cols=190 Identities=13% Similarity=0.205 Sum_probs=149.7
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeec-CCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEE
Q 005902 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (671)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVd-aspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIv 309 (671)
...+|+++.+++||+||+++.+..+.....+||+++|+ +++++++++|+|.+. |.+||.++.++++||+++++++|+
T Consensus 24 ~~~~W~l~~~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~--r~~Wd~~~~~~~vie~l~~~~~I~ 101 (235)
T cd08872 24 GADGWQLFAEEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV--RMDWETTLENFHVVETLSQDTLIF 101 (235)
T ss_pred CCCCCEEEEeCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhh--HHHHHhhhheeEEEEecCCCCEEE
Confidence 34589999999999999997764322223699999999 899999999999986 999999999999999999999999
Q ss_pred EEEecCCcCCCCCCCCeEEEEEEEEEcCC-------CcEEEEEeeccCCCCCCCCCeeeEEE---cCeeEEEEe-cCCCC
Q 005902 310 YGTYDPKYLTRWQSKRDFVFSRQWFRGQD-------GTYTILQFPAVHKKRPPKSGYRRTKI---NPSTWEIRS-LNLPM 378 (671)
Q Consensus 310 Y~~~kp~~~P~~vspRDFV~LRswRr~~d-------GsYvIa~~SV~Hp~~Pp~~g~VRAev---~~sGylI~P-~~~~~ 378 (671)
|+.++.. +++++||||++++|++.++ +.|+|++.|+.||.+||++||||+.. +.++++|.+ .+.-.
T Consensus 102 Y~~~k~P---wPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~ 178 (235)
T cd08872 102 HQTHKRV---WPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQE 178 (235)
T ss_pred EEEccCC---CCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCccc
Confidence 9998854 4699999999999998654 67999999999999999999999996 344444443 22100
Q ss_pred CC-CCCceEEEEEEeeecCCCccccccc-cccchhhhHHHHHHHHHHHHHHHhcC
Q 005902 379 GS-NGAKCLVTQMLEIHSSGWCRWKKNS-STKFEKTTHFALLSQVAGLKEYIGAN 431 (671)
Q Consensus 379 ~~-~~~~c~VT~I~qvDlKGw~~w~p~~-~~~~~~~~~~~mL~~Va~LRe~~~~~ 431 (671)
.+ +..+|+|||++++||+||+ |.| .+.+.+..... +|..|-.|+..+
T Consensus 179 ~t~~~~~~~ity~~~~dPgG~i---P~wvvn~~~k~~~P~---~l~~~~~~~~~~ 227 (235)
T cd08872 179 ITRDNILCKITYVANVNPGGWA---PASVLRAVYKREYPK---FLKRFTSYVQEK 227 (235)
T ss_pred ccCCCCeEEEEEEEEeCCCCCc---cHHHHHHHHHhhchH---HHHHHHHHHHHh
Confidence 00 2358999999999999999 433 34455555554 556666666543
No 21
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=7.4e-28 Score=241.37 Aligned_cols=176 Identities=17% Similarity=0.198 Sum_probs=152.3
Q ss_pred CCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEE
Q 005902 233 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 312 (671)
Q Consensus 233 sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~ 312 (671)
.||..+...|++.++.+..+ .++.-+++|+++.|+++|++|+.+|.+ .|.+||.++.++++|+++|++++|+|++
T Consensus 27 k~w~~~~~~~~~el~~~k~~-~gs~l~~~r~~~~i~a~~~~vl~~lld----~~~~Wd~~~~e~~vIe~ld~~~~I~Yy~ 101 (204)
T cd08908 27 KGWVSYSTSEQAELSYKKVS-EGPPLRLWRTTIEVPAAPEEILKRLLK----EQHLWDVDLLDSKVIEILDSQTEIYQYV 101 (204)
T ss_pred cCCcccCCCCcEEEEEeccC-CCCCcEEEEEEEEeCCCHHHHHHHHHh----hHHHHHHHhhheEeeEecCCCceEEEEE
Confidence 35655556666666444332 345568999999999999999999976 5899999999999999999999999999
Q ss_pred ecCCcCCCCCCCCeEEEEEEEEE-cCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEE
Q 005902 313 YDPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML 391 (671)
Q Consensus 313 ~kp~~~P~~vspRDFV~LRswRr-~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~ 391 (671)
++++| ++++||||++|+|+. .++|.|+|...|+.|+.+|+. +|||....+||+|+|+++ ++|+|||++
T Consensus 102 ~~~Pw---P~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~------g~t~vtyi~ 170 (204)
T cd08908 102 QNSMA---PHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGS------GKSKLTYMC 170 (204)
T ss_pred ccCCC---CCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCC------CcEEEEEEE
Confidence 98654 699999999999986 577899999999999999976 699999999999999875 789999999
Q ss_pred eeecCCCccccccccccchhhhHHHHHHHHHHHHHHHhc
Q 005902 392 EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (671)
Q Consensus 392 qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~ 430 (671)
++||+|++ |.|+....+|++.+ .+.+||+.|..
T Consensus 171 ~~DPgG~i---P~W~~N~~g~~~~~---~~~~~r~sf~~ 203 (204)
T cd08908 171 RIDLRGHM---PEWYTKSFGHLCAA---EVVKIRDSFSN 203 (204)
T ss_pred EeCCCCCC---cHHHHhhHHHHHHH---HHHHHHhhccC
Confidence 99999999 88888889999977 88999999853
No 22
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.95 E-value=1.4e-26 Score=232.49 Aligned_cols=181 Identities=17% Similarity=0.159 Sum_probs=151.7
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHccCCcccccccCCCCceEEEEeecC-ceEE
Q 005902 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HYDV 308 (671)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvV-daspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~-~tDI 308 (671)
+.++|+++..++||+||++..+. +....+|+++++ ++|+++++++|+|.+. |.+||.++.++++|++.++ +++|
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~--s~~~~~k~~~~~~d~s~~~~~~~~~D~~~--r~~Wd~~~~~~~~le~~~~~~~~i 94 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG--TGLYEYKVYGSFDDVTARDFLNVQLDLEY--RKKWDATAVELEVVDEDPETGSEI 94 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC--CCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHhhheeEEEEEccCCCCCEE
Confidence 56789999999999999997753 445689998866 9999999999999986 9999999999999999755 8999
Q ss_pred EEEEecCCcCCCCCCCCeEEEEEEEEEc-CCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEE
Q 005902 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 387 (671)
Q Consensus 309 vY~~~kp~~~P~~vspRDFV~LRswRr~-~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~V 387 (671)
+|+.++. |+++++||||+.|.|+.+ ++|.|+|+++||.||.+|+.+|+||+....+||+|+|.++. +.+.|.+
T Consensus 95 ~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~---~~~~~~~ 168 (207)
T cd08911 95 IYWEMQW---PKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF---DEPGFEF 168 (207)
T ss_pred EEEEEEC---CCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC---CCCCeEE
Confidence 9999884 557999999999998876 45688999999999999999999999999999999998631 2357999
Q ss_pred EEEEeeecCCCccccccc-cccchhhhHHHHHHHHHHHHHH
Q 005902 388 TQMLEIHSSGWCRWKKNS-STKFEKTTHFALLSQVAGLKEY 427 (671)
Q Consensus 388 T~I~qvDlKGw~~w~p~~-~~~~~~~~~~~mL~~Va~LRe~ 427 (671)
+++.+.||+||+ |.| .|.+.+..+.. .+..|++-
T Consensus 169 ~~~~~~dPgG~I---P~~lvN~~~~~~~~~---~l~~l~~a 203 (207)
T cd08911 169 VLTYFDNPGVNI---PSYITSWVAMSGMPD---FLERLRNA 203 (207)
T ss_pred EEEEEeCCCCcc---CHHHHHHHHHhhccH---HHHHHHHH
Confidence 999999999999 544 34455555444 55555543
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.94 E-value=1.1e-25 Score=217.40 Aligned_cols=154 Identities=34% Similarity=0.592 Sum_probs=142.7
Q ss_pred CCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEE
Q 005902 233 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 312 (671)
Q Consensus 233 sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~ 312 (671)
.+|++..+++|++||.+..+. +...++|++++|++|+++|+++|.+.+. |++||+.+.++++|+++++++.|+|++
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~--~~~~~~k~~~~i~~~~~~v~~~l~d~~~--~~~w~~~~~~~~vl~~~~~~~~i~~~~ 90 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED--SGLKLLKAEGVIPASPEQVFELLMDIDL--RKKWDKNFEEFEVIEEIDEHTDIIYYK 90 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC--CCceeEEEEEEECCCHHHHHHHHhCCch--hhchhhcceEEEEEEEeCCCeEEEEEE
Confidence 589999999999999997753 3458999999999999999999999775 999999999999999999999999999
Q ss_pred ecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEe
Q 005902 313 YDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE 392 (671)
Q Consensus 313 ~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~q 392 (671)
++..| ++++||||+++++...++|.++++..|+.|+.+|+.+++|||.+..+||+|+|+++ ++|++||+++
T Consensus 91 ~~~p~---p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~------~~~~vt~~~~ 161 (193)
T cd00177 91 TKPPW---PVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP------GKTKVTYVLQ 161 (193)
T ss_pred eeCCC---ccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC------CCEEEEEEEe
Confidence 98654 59999999999999888789999999999999999999999999999999999954 7899999999
Q ss_pred eecCCCc
Q 005902 393 IHSSGWC 399 (671)
Q Consensus 393 vDlKGw~ 399 (671)
+|++||+
T Consensus 162 ~D~~g~i 168 (193)
T cd00177 162 VDPKGSI 168 (193)
T ss_pred eCCCCCc
Confidence 9999999
No 24
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.94 E-value=1.1e-25 Score=226.14 Aligned_cols=177 Identities=20% Similarity=0.222 Sum_probs=147.1
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeec-CCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEE
Q 005902 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (671)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVd-aspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIv 309 (671)
+.++|+++.+++||+||++..+ ++....+|++++++ +++++++++|+|.+. |++||.++.+ +++..+++++|+
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~--~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~--~~~~~~~~~~i~ 96 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDE--QSGLYEYKVFGVLEDCSPSLLADVYMDLEY--RKQWDQYVKE--LYEKECDGETVI 96 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccC--CCCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHHHHHh--heeecCCCCEEE
Confidence 4578999999999999999664 34556899999998 699999999999986 9999999987 788889899999
Q ss_pred EEEecCCcCCCCCCCCeEEEEEEEEEc-CCC--cEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 005902 310 YGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG--TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (671)
Q Consensus 310 Y~~~kp~~~P~~vspRDFV~LRswRr~-~dG--sYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~ 386 (671)
|+.++. |+++++||||++|+++.. .+| .++|+++|+.||.+|+.+|+||+....++|+|+|.++ ++|.
T Consensus 97 y~~~k~---PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~------~~t~ 167 (207)
T cd08910 97 YWEVKY---PFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK------KGSK 167 (207)
T ss_pred EEEEEc---CCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC------CceE
Confidence 999985 457999999999988753 233 4788999999999999999999999999999999764 5799
Q ss_pred EEEEEeeecCCCccccccc-cccchhhhHHHHHHHHHHHHHHH
Q 005902 387 VTQMLEIHSSGWCRWKKNS-STKFEKTTHFALLSQVAGLKEYI 428 (671)
Q Consensus 387 VT~I~qvDlKGw~~w~p~~-~~~~~~~~~~~mL~~Va~LRe~~ 428 (671)
++|+.+.||+|++ |.| .|.+.+..+ ...+..||+-.
T Consensus 168 i~~~~~~DPgG~I---P~wlvN~~~~~~~---~~~l~~l~ka~ 204 (207)
T cd08910 168 VFMYYFDNPGGMI---PSWLINWAAKNGV---PNFLKDMQKAC 204 (207)
T ss_pred EEEEEEeCCCCcc---hHHHHHHHHHHhh---HHHHHHHHHHH
Confidence 9999999999999 544 233444433 34566666543
No 25
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.94 E-value=3.8e-25 Score=217.66 Aligned_cols=181 Identities=22% Similarity=0.295 Sum_probs=152.2
Q ss_pred cccc-CCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCce
Q 005902 228 DAIE-AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 306 (671)
Q Consensus 228 ~~~a-~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~t 306 (671)
.+++ +.+|+++.+++|++||+++.+. +....+|++++|+++|++||+++.|++. |++||+.+.++++||+++++.
T Consensus 11 ~~~~~~~~W~~~~~~~~v~v~~~~~~~--~~~~~~k~~~~i~~s~e~v~~vi~d~e~--~~~w~~~~~~~~vie~~~~~~ 86 (195)
T cd08876 11 AALAPDGDWQLVKDKDGIKVYTRDVEG--SPLKEFKAVAEVDASIEAFLALLRDTES--YPQWMPNCKESRVLKRTDDNE 86 (195)
T ss_pred cccCCCCCCEEEecCCCeEEEEEECCC--CCeEEEEEEEEEeCCHHHHHHHHhhhHh--HHHHHhhcceEEEeecCCCCc
Confidence 3444 4569999999999999997653 3347899999999999999999999996 999999999999999999989
Q ss_pred EEEEEEecCCcCCCCCCCCeEEEEEEEEEcC-CCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCce
Q 005902 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKC 385 (671)
Q Consensus 307 DIvY~~~kp~~~P~~vspRDFV~LRswRr~~-dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c 385 (671)
+++|..++.. +++++||||+.+.++... +|.++|...|+.|+ +|+.++|||+....+||.|+|+++ ++|
T Consensus 87 ~i~~~~~~~p---~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~------~~t 156 (195)
T cd08876 87 RSVYTVIDLP---WPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN------GKT 156 (195)
T ss_pred EEEEEEEecc---cccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC------CeE
Confidence 9999998854 358999999998887754 78899999999998 899999999999999999999975 689
Q ss_pred EEEEEEeeecCCCcccccccc-ccchhhhHHHHHHHHHHHHHHH
Q 005902 386 LVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYI 428 (671)
Q Consensus 386 ~VT~I~qvDlKGw~~w~p~~~-~~~~~~~~~~mL~~Va~LRe~~ 428 (671)
+|+|++++|++||+ |.+. +.+.+. .+...+++||+..
T Consensus 157 ~vt~~~~~dp~g~i---P~~lv~~~~~~---~~~~~l~~l~~~~ 194 (195)
T cd08876 157 RVTYQAYADPGGSI---PGWLANAFAKD---APYNTLENLRKQL 194 (195)
T ss_pred EEEEEEEeCCCCCC---CHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 99999999999999 6542 333333 3345667777653
No 26
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.93 E-value=1e-24 Score=218.95 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=151.9
Q ss_pred CCCEEEEEeCC----EEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHccCCcccccccCCCCceEEEEeecC-ce
Q 005902 233 HEWKCVRTLNG----VRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HY 306 (671)
Q Consensus 233 sgW~l~~~kng----VrVy~~~~~~~~~~~~~~Ka~gvV-daspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~-~t 306 (671)
.+|+++..++| |+||++..+. +....+|+++++ ++|+++++++|+|.+. |++||.++.+.++|+..++ ++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~--s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~~~~le~~~~~~~ 97 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG--TGLYEYLVRGVFEDCTPELLRDFYWDDEY--RKKWDETVIEHETLEEDEKSGT 97 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC--CCceEEEEEEEEcCCCHHHHHHHHcChhh--HhhhhhheeeEEEEEecCCCCc
Confidence 68999999999 9999997642 445789999999 5699999999999886 9999999999999999655 58
Q ss_pred EEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 005902 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (671)
Q Consensus 307 DIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~ 386 (671)
+|+|++++. |+++++||||+.|.++...+|.++|+.+|+.||.+|+. |+||+....++|+|+|++. ++++|.
T Consensus 98 ~i~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~----~~~~t~ 169 (209)
T cd08870 98 EIVRWVKKF---PFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKG----DGQGSA 169 (209)
T ss_pred EEEEEEEEC---CCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecC----CCCceE
Confidence 999999884 55799999999999888778899999999999999999 9999999999999999952 236899
Q ss_pred EEEEEeeecCCCccccccccccchhhhHHHHHHHHHHHHHHH
Q 005902 387 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (671)
Q Consensus 387 VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~ 428 (671)
++++.+.|++|++ |.|. +.......+...+..||+-+
T Consensus 170 ~~~~~~~dp~G~I---P~wl--vN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 170 CEVTYFHNPDGGI---PREL--AKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred EEEEEEECCCCCC---CHHH--HHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999 6552 23333444456777777765
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.88 E-value=4.3e-22 Score=200.37 Aligned_cols=180 Identities=18% Similarity=0.187 Sum_probs=151.6
Q ss_pred cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCce
Q 005902 227 GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 306 (671)
Q Consensus 227 ~~~~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~t 306 (671)
+++.+..+|++..+++|++||.+..+. +....+|++|+|+++++.++.+|.+.+. +++|++.+.+.++|++++.++
T Consensus 16 ~~l~~~~~W~~~~~~~~i~v~~r~~~~--~~~~~~k~e~~i~~~~~~~~~vl~d~~~--~~~W~p~~~~~~~l~~~~~~~ 91 (215)
T cd08877 16 KDLDESDGWTLQKESEGIRVYYKFEPD--GSLLSLRMEGEIDGPLFNLLALLNEVEL--YKTWVPFCIRSKKVKQLGRAD 91 (215)
T ss_pred hcccCCCCcEEeccCCCeEEEEEeCCC--CCEEEEEEEEEecCChhHeEEEEehhhh--HhhhcccceeeEEEeecCCce
Confidence 456668899999999999999986643 3358899999999999999999999885 999999999999999999999
Q ss_pred EEEEEEecCCcCCCCCCCCeEEEEEEEE-Ec-CCCcEEEEEeeccCCC---------CCCCC-CeeeEEEcCeeEEEEec
Q 005902 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWF-RG-QDGTYTILQFPAVHKK---------RPPKS-GYRRTKINPSTWEIRSL 374 (671)
Q Consensus 307 DIvY~~~kp~~~P~~vspRDFV~LRswR-r~-~dGsYvIa~~SV~Hp~---------~Pp~~-g~VRAev~~sGylI~P~ 374 (671)
.|+|+.++. |+++++||+|+..... .. ++|.++|+..|+.|+. +|+.+ |+||++...+||+|+|+
T Consensus 92 ~v~y~~~~~---PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~ 168 (215)
T cd08877 92 KVCYLRVDL---PWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI 168 (215)
T ss_pred EEEEEEEeC---ceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc
Confidence 999998884 5579999999853322 23 7899999999999876 69998 99999999999999999
Q ss_pred CCCCCCCCCceEEEEEEeeecCCC-ccccccc-cccchhhhHHHHHHHHH
Q 005902 375 NLPMGSNGAKCLVTQMLEIHSSGW-CRWKKNS-STKFEKTTHFALLSQVA 422 (671)
Q Consensus 375 ~~~~~~~~~~c~VT~I~qvDlKGw-~~w~p~~-~~~~~~~~~~~mL~~Va 422 (671)
++ ++|.++++.++||+|+ + |.| .|.+.+.++..++..+.
T Consensus 169 ~~------~~t~v~~~~~~DP~g~~I---P~~liN~~~k~~~~~~~~~l~ 209 (215)
T cd08877 169 SP------TKCYLRFVANVDPKMSLV---PKSLLNFVARKFAGLLFEKIQ 209 (215)
T ss_pred CC------CCeEEEEEEEcCCCcccC---CHHHHHHHHHHHHHHHHHHHH
Confidence 86 6899999999999999 8 533 35566666666554433
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.86 E-value=1.2e-20 Score=188.80 Aligned_cols=162 Identities=22% Similarity=0.337 Sum_probs=141.9
Q ss_pred cccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHccCCcccccccCCCCceEEEEeec-Cce
Q 005902 229 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYD-GHY 306 (671)
Q Consensus 229 ~~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvV-daspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD-~~t 306 (671)
+.+..+|+++..++++.||....+.. + ...+|+.++. |+||+.++++++|.+. |++||.++.+.++||... -++
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~~-g-~~~Yk~~~vfeDvtp~~~~Dv~~D~eY--RkkWD~~vi~~e~ie~d~~tg~ 100 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPKT-G-LYEYKSRTVFEDVTPEIVRDVQWDDEY--RKKWDDMVIELETIEEDPVTGT 100 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccCC-C-CEEEEEEEEEcCCCHHHHHHHHhhhHH--HHHHHHHhhhheeeeecCCCCc
Confidence 66788999999999999999533322 2 5789999976 6899999999999996 999999999999999986 567
Q ss_pred EEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEE-ecCCCCCCCCCce
Q 005902 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIR-SLNLPMGSNGAKC 385 (671)
Q Consensus 307 DIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~-P~~~~~~~~~~~c 385 (671)
+|+|++.+ +|.++++||||++|.|...++-.|+|+++||.||++||.+++||+.+.-+||+|+ |... .+++.|
T Consensus 101 ~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~---~~~~~~ 174 (219)
T KOG2761|consen 101 EVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRS---GDEQGC 174 (219)
T ss_pred eEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEccccc---CCCCcc
Confidence 99999988 5678999999999999887656799999999999999999999999999999999 5543 256789
Q ss_pred EEEEEEeeecCCCcc
Q 005902 386 LVTQMLEIHSSGWCR 400 (671)
Q Consensus 386 ~VT~I~qvDlKGw~~ 400 (671)
.+.++...|++|-+|
T Consensus 175 ~~~~~~~~~p~~~iP 189 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIP 189 (219)
T ss_pred EEEEEEEECCCCCCc
Confidence 999999999999995
No 29
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.62 E-value=1.1e-14 Score=148.42 Aligned_cols=132 Identities=15% Similarity=0.230 Sum_probs=116.1
Q ss_pred CCcccEEEEEEeecCCHHHHHHHHHccCCcccccccC----CCCceEEEEeecCc--------eEEEEEEecCCcCCCCC
Q 005902 255 SGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDM----LTGDLELVDSYDGH--------YDVVYGTYDPKYLTRWQ 322 (671)
Q Consensus 255 ~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~----~~~~~eVVE~lD~~--------tDIvY~~~kp~~~P~~v 322 (671)
++.+-+-|++|+|...|..+.++|+| +..|-. .+...++++.|+.. ..++|..++... .++
T Consensus 56 ~~~~eASR~~glV~m~~~~lVe~lmD-----~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pS--pLV 128 (229)
T cd08875 56 GFTTEASRACGLVMMNAIKLVEILMD-----VNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPS--PLV 128 (229)
T ss_pred CCeEEEEeeeEEEecCHHHHHHHHhC-----hhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCc--ccc
Confidence 34556789999999999999999998 556666 88899999999544 778998888543 489
Q ss_pred CCCeEEEEEEEEEcCCCcEEEEEeeccCC-CCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCc
Q 005902 323 SKRDFVFSRQWFRGQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (671)
Q Consensus 323 spRDFV~LRswRr~~dGsYvIa~~SV~Hp-~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~ 399 (671)
++|||++|||.+..+||+++|+.+|+++. ..|+.++++|++.++|||+|+|+++ +.|+||||-|+|..-|.
T Consensus 129 p~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~n------G~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 129 PTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPN------GYSKVTWVEHVEVDEKP 200 (229)
T ss_pred cCCeEEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCC------CceEEEEEEEEeccCCc
Confidence 99999999999999999999999999998 6888889999999999999999997 68999999999998874
No 30
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.58 E-value=2.3e-15 Score=163.09 Aligned_cols=167 Identities=16% Similarity=0.308 Sum_probs=141.3
Q ss_pred cccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeec-CCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceE
Q 005902 229 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (671)
Q Consensus 229 ~~a~sgW~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVd-aspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tD 307 (671)
+.....|+++...+.+++|+++.+..+-..-.+||...|. +++.++++++++.+. |.+|+.++..+.|||+|.+++-
T Consensus 399 ~g~d~nwqlFaeegemkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~--rndwettle~~~vve~is~d~~ 476 (611)
T KOG1739|consen 399 VGGDANWQLFAEEGEMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDV--RNDWETTLENFHVVETISDDAI 476 (611)
T ss_pred ccccchhhhhcccCCccccceeeccCCcccCccccchhhcchhHHHHHHHHcChhh--hcchhhhhhhceeeeeecCCeE
Confidence 3345569999999999999998775555555678877554 599999999999986 9999999999999999999999
Q ss_pred EEEEEecCCcCCCCCCCCeEEEEEEEEEc----CC--CcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCC
Q 005902 308 VVYGTYDPKYLTRWQSKRDFVFSRQWFRG----QD--GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSN 381 (671)
Q Consensus 308 IvY~~~kp~~~P~~vspRDFV~LRswRr~----~d--GsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~ 381 (671)
|+|++.|..| +.++||-.++.+.|+- ++ +.|+||++||+|.+.|-...+||+.+..+.-+-.-++++.++.
T Consensus 477 ~~~qthkrvw---pasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p~~~q 553 (611)
T KOG1739|consen 477 IIYQTHKRVW---PASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPPEGNQ 553 (611)
T ss_pred EEEecccccC---CCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCcccCC
Confidence 9999999887 6999999999999973 23 4899999999999999999999999987777666665543322
Q ss_pred -----CCceEEEEEEeeecCCCcc
Q 005902 382 -----GAKCLVTQMLEIHSSGWCR 400 (671)
Q Consensus 382 -----~~~c~VT~I~qvDlKGw~~ 400 (671)
.-.|++||+.+++|+||.|
T Consensus 554 ~l~rdd~~ckityvs~vnpggwap 577 (611)
T KOG1739|consen 554 ELSRDDILCKITYVSNVNPGGWAP 577 (611)
T ss_pred cccccceeEEEEEEeeeCCCCccc
Confidence 3589999999999999994
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.17 E-value=9.1e-10 Score=111.48 Aligned_cols=131 Identities=18% Similarity=0.060 Sum_probs=96.3
Q ss_pred cccccCCCC--ceEEEEeecCce----EEEEEEecCCcCCCCCCCCeEEEEEE-EEEcC-CCcEEEEEeeccCCCCC-CC
Q 005902 286 RYEWDMLTG--DLELVDSYDGHY----DVVYGTYDPKYLTRWQSKRDFVFSRQ-WFRGQ-DGTYTILQFPAVHKKRP-PK 356 (671)
Q Consensus 286 R~eWD~~~~--~~eVVE~lD~~t----DIvY~~~kp~~~P~~vspRDFV~LRs-wRr~~-dGsYvIa~~SV~Hp~~P-p~ 356 (671)
-.+|-..+. ++++|+..++.. .|+|+.++ +|+++++|||+.+.. ....+ ...++++..++.|+.+| +.
T Consensus 65 E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~ 141 (208)
T cd08864 65 EKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLY 141 (208)
T ss_pred hhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccC
Confidence 456999999 899999998665 88888887 466899999999988 33333 14689999999999999 89
Q ss_pred CCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEE--eeecCCCccccccccccchhhhHHHHHHHHHHHHHHH
Q 005902 357 SGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML--EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (671)
Q Consensus 357 ~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~--qvDlKGw~~w~p~~~~~~~~~~~~~mL~~Va~LRe~~ 428 (671)
++||||. ..+|..|+.++.. ....+.|+|++ +.|++|++ |.|. ....+..++..-|..+=+|+
T Consensus 142 ~~~Vr~~-y~SgE~~~~~p~~---~~~~~~vew~maT~sDpGG~I---P~wl--~n~~~p~aI~~Dv~~fl~W~ 206 (208)
T cd08864 142 ENAVLGR-YASVEKISYLPDA---DGKSNKVEWIMATRSDAGGNI---PRWL--TKLTIPKAIAKDVPLFLDWI 206 (208)
T ss_pred CCcEEEE-EEEEEEEEEcCcc---CCCcCCEEEEEEEeeCCCCcC---cHHH--HhccCchHHHHhHHHHHHHh
Confidence 9999999 6788777765531 01345566666 99999999 6553 23344444445555555554
No 32
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.12 E-value=3.3e-10 Score=97.59 Aligned_cols=91 Identities=14% Similarity=0.273 Sum_probs=69.7
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEeccC
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~~ 127 (671)
|||||++.+.. ...| ++|||||++..|.|||.+.... ..|.....|.++...++... -++|+|.++.
T Consensus 1 ~~G~L~k~~~~--~~~W-~~r~~vl~~~~L~~~~~~~~~~--~~~~~~i~l~~~~~~~~~~~-------~~~F~i~~~~- 67 (91)
T cd01246 1 VEGWLLKWTNY--LKGW-QKRWFVLDNGLLSYYKNKSSMR--GKPRGTILLSGAVISEDDSD-------DKCFTIDTGG- 67 (91)
T ss_pred CeEEEEEeccc--CCCc-eeeEEEEECCEEEEEecCccCC--CCceEEEEeceEEEEECCCC-------CcEEEEEcCC-
Confidence 79999997643 3555 9999999999999999876543 45666777776544443322 3688887642
Q ss_pred cCcceeeeccCHHHHHHHHHHHHHH
Q 005902 128 ESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 128 ~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
.+.+.|.|.|.+|+.+|++||+.|
T Consensus 68 -~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 68 -DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred -CCEEEEECCCHHHHHHHHHHHHhC
Confidence 388999999999999999999876
No 33
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.07 E-value=5.9e-10 Score=100.67 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=68.8
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCC-CCccceeeeecCcceeecccceeeeCceEEEEEEEecc
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~-~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~ 126 (671)
+||||..-|... ...| ++|||||.++.|.|||.+....| ++++|.+. ...+.|.+.-.....+...|.|.|..+
T Consensus 1 KeG~L~K~g~~~-~k~w-kkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~--~~~~~v~~~~~~~~~~~~~~~F~i~t~- 75 (103)
T cd01251 1 KEGFMEKTGPKH-TEGF-KKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQ--EDGYEVREGLPPGTQGNHWYGVTLVTP- 75 (103)
T ss_pred CceeEEecCCCC-CCCc-eeEEEEEeCCEEEEECCCCCcCcCcEEEeecc--ccceeEeccCCccccccccceEEEEeC-
Confidence 589999977642 2456 99999999999999997554333 23344331 122345321111112233468888775
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 127 DESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 127 ~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
++.+.|.|.|.+|+..||+||+.|+.
T Consensus 76 --~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 --ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999975
No 34
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.00 E-value=2.3e-09 Score=92.35 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=77.8
Q ss_pred eeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeeccccee--eeCceEEEEEEEe
Q 005902 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRR--FNHGDVYVMRLYN 124 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~--~~~~~~yv~~~yn 124 (671)
.++|||++.+ .....| ++|||||.+..|.|||.+.... ...|.....++.. .|.+..... .....-+.|.|.+
T Consensus 2 ~~~G~L~~~~--~~~~~w-k~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~ 76 (104)
T PF00169_consen 2 IKEGWLLKKS--SSRKKW-KKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITT 76 (104)
T ss_dssp EEEEEEEEEE--SSSSSE-EEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEE
T ss_pred EEEEEEEEEC--CCCCCe-EEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEe
Confidence 5899999977 555566 9999999999999999877422 3567777777766 776655442 2334456777777
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 005902 125 RLDESKKGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 125 ~~~~~~~~~laa~~~eea~~W~~a~~~a~ 153 (671)
+.. ..+.|.|.|.+|...|+.+|+.|+
T Consensus 77 ~~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 77 PNG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TTS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 766 789999999999999999999985
No 35
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.98 E-value=6.8e-09 Score=87.58 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=78.6
Q ss_pred eeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEecc
Q 005902 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~ 126 (671)
.++|||++.... +.+-.++||++|.++.|.||+.++... ...|.....|++. .|.+......+ ..-+.|.|.++.
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~~~-~~~~~f~l~~~~ 76 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKK-DYKPKGSIDLSGI-TVREAPDPDSA-KKPHCFEIKTAD 76 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccc-cCCCceEEECCcC-EEEeCCCCccC-CCceEEEEEecC
Confidence 589999998775 445569999999999999999988754 3677778888886 66655444322 234678887665
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHH
Q 005902 127 DESKKGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 127 ~~~~~~~laa~~~eea~~W~~a~~~a~ 153 (671)
. ..+.|.|.|.+|+..|+++|+.|+
T Consensus 77 ~--~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 77 R--RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred C--ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 4 789999999999999999999885
No 36
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.97 E-value=3.2e-09 Score=93.79 Aligned_cols=94 Identities=15% Similarity=0.355 Sum_probs=66.6
Q ss_pred eeeeEEEEEccc-c-ccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEe
Q 005902 47 EYFGWVYHMGTN-S-IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (671)
Q Consensus 47 ~~~Gw~y~~g~~-~-~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn 124 (671)
+++||||+-+.. + ....| ++|||||+++.|.|||.+.... |...+.+.+ +.|+.. .+ .+.-|+|.|-+
T Consensus 1 ~~~GwL~kk~~~~g~~~k~W-kkrwfvL~~~~L~yyk~~~~~~----~~~~I~L~~-~~v~~~-~~---~~k~~~F~I~~ 70 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKW-ARRWFVLKGTTLYWYRSKQDEK----AEGLIFLSG-FTIESA-KE---VKKKYAFKVCH 70 (96)
T ss_pred CceeEEEEecCCCCccccCc-eeEEEEEECCEEEEECCCCCCc----cceEEEccC-CEEEEc-hh---cCCceEEEECC
Confidence 379999996532 2 34477 9999999999999999776544 334444444 344421 11 12357888864
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 125 RLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 125 ~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
+. .+.+-|+|.|.||+.+||+||.+|
T Consensus 71 ~~--~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PV--YKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CC--CcEEEEEeCCHHHHHHHHHHHHhC
Confidence 32 378899999999999999999876
No 37
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.85 E-value=2e-08 Score=90.82 Aligned_cols=92 Identities=17% Similarity=0.312 Sum_probs=72.4
Q ss_pred ceeeeEEEEEccccccccceeeeeEEEeCc------eeeeeccCCCCCC-CCccceeeeecCcceeecccceeeeCceEE
Q 005902 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGK------YVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVY 118 (671)
Q Consensus 46 ~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~------~l~~yK~~p~~~~-~~~pir~~~i~~~~~v~d~Gr~~~~~~~~y 118 (671)
+.++|||... .++ |+|||||++. .|.|||.+..-.- ...|.+.+.++.|.-|..+-. ..| + |
T Consensus 2 v~k~GyL~K~------K~~-kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~-~--~ 70 (101)
T cd01257 2 VRKSGYLRKQ------KSM-HKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKH-R--H 70 (101)
T ss_pred ccEEEEEeEe------cCc-EeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-ccc-C--e
Confidence 5689999995 355 8999999998 8999998775331 256888888888888874322 222 2 7
Q ss_pred EEEEEeccCcCcceeeeccCHHHHHHHHHHHHH
Q 005902 119 VMRLYNRLDESKKGEIACATAGEARKWMEAFDQ 151 (671)
Q Consensus 119 v~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~ 151 (671)
+|.|+. +++..-|+|.|.+|...|+++|.+
T Consensus 71 ~f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 888877 457999999999999999999965
No 38
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.77 E-value=5.1e-08 Score=87.45 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=69.3
Q ss_pred eeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceee-cccceeeeCceEEEEEEEec
Q 005902 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVE-ELGRRRFNHGDVYVMRLYNR 125 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~-d~Gr~~~~~~~~yv~~~yn~ 125 (671)
.++|||.+-|.+. ..| ++|||||+++.|.|||.+.. ..|+..+.+. +|.|+ +.+.....++ =++|.|.
T Consensus 3 ~k~G~L~Kkg~~~--k~W-kkRwfvL~~~~L~yyk~~~~----~~~~~~I~L~-~~~v~~~~~~~~~~~~-~~~F~I~-- 71 (100)
T cd01233 3 SKKGYLNFPEETN--SGW-TRRFVVVRRPYLHIYRSDKD----PVERGVINLS-TARVEHSEDQAAMVKG-PNTFAVC-- 71 (100)
T ss_pred ceeEEEEeeCCCC--CCc-EEEEEEEECCEEEEEccCCC----ccEeeEEEec-ccEEEEccchhhhcCC-CcEEEEE--
Confidence 4789999977643 567 99999999999999998764 3456666666 56554 1122111122 2577774
Q ss_pred cCcCcceeeeccCHHHHHHHHHHHHHHH
Q 005902 126 LDESKKGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 126 ~~~~~~~~laa~~~eea~~W~~a~~~a~ 153 (671)
..++.+.|.|.|.+|...||.||...+
T Consensus 72 -t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 72 -TKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred -CCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 347889999999999999999998763
No 39
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.76 E-value=4.5e-08 Score=84.73 Aligned_cols=94 Identities=13% Similarity=0.280 Sum_probs=64.2
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEeccC
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~~ 127 (671)
|+|||++-+... ...| ++|||||.+..|.||+..+... ..|+.+..+. .|.|+...... +.-++|.|....
T Consensus 1 k~G~L~kk~~~~-~~~W-~kr~~~L~~~~l~~y~~~~~~~--~~~~~~i~l~-~~~v~~~~~~~---~~~~~f~i~~~~- 71 (94)
T cd01250 1 KQGYLYKRSSKS-NKEW-KKRWFVLKNGQLTYHHRLKDYD--NAHVKEIDLR-RCTVRHNGKQP---DRRFCFEVISPT- 71 (94)
T ss_pred CcceEEEECCCc-CCCc-eEEEEEEeCCeEEEEcCCcccc--cccceEEecc-ceEEecCcccc---CCceEEEEEcCC-
Confidence 689999944332 3355 9999999999999999877532 2333332222 24444322211 234788887543
Q ss_pred cCcceeeeccCHHHHHHHHHHHHHH
Q 005902 128 ESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 128 ~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
+.+.|.|.|.+|+.+|+.||+++
T Consensus 72 --~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 --KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred --cEEEEECCCHHHHHHHHHHHhcC
Confidence 78999999999999999999864
No 40
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.76 E-value=4.5e-08 Score=86.68 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=65.7
Q ss_pred eeeEEEEEccccccccceeeeeEEEeC--ceeeeeccCCCCCCCCccceeeeecCcceeecc----cceeeeCceEEEEE
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL----GRRRFNHGDVYVMR 121 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~--~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~----Gr~~~~~~~~yv~~ 121 (671)
++|||++-|. .-..| ++|||||.+ ..|.|||.+.... |...+-+...+.|+.. |.. -|...-+.|.
T Consensus 1 ~~G~L~K~g~--~~k~W-kkRwFvL~~~~~~L~Yy~~~~~~~----~~g~I~L~~~~~v~~~~~~~~~~-~~~~~~~~f~ 72 (101)
T cd01235 1 CEGYLYKRGA--LLKGW-KPRWFVLDPDKHQLRYYDDFEDTA----EKGCIDLAEVKSVNLAQPGMGAP-KHTSRKGFFD 72 (101)
T ss_pred CeEEEEEcCC--CCCCc-cceEEEEECCCCEEEEecCCCCCc----cceEEEcceeEEEeecCCCCCCC-CCCCCceEEE
Confidence 5899999774 45678 999999995 4999999664434 4334444455555532 111 1222335566
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 005902 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 122 ~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~ 153 (671)
|. .+.+.+-|.|.|.||+..|++||+++|
T Consensus 73 i~---t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 73 LK---TSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EE---eCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 64 346789999999999999999999875
No 41
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.75 E-value=5.6e-08 Score=86.10 Aligned_cols=87 Identities=9% Similarity=0.179 Sum_probs=61.0
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCC---CCccceeeeecCcceeecccceeeeCceEEEEEEEe
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP---GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~---~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn 124 (671)
++|||++.| .+-..| ++|||||++..|.|||.++...+ +.+||+.+. |....- +. ..|.|..
T Consensus 1 ~~G~L~K~~--~~~k~W-k~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~------i~~~~~----~~--~~F~i~~ 65 (91)
T cd01247 1 TNGVLSKWT--NYINGW-QDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAI------IAAHEF----DE--NRFDISV 65 (91)
T ss_pred CceEEEEec--cccCCC-ceEEEEEECCEEEEEecCccCcCCCcEEEECcccE------EEcCCC----CC--CEEEEEe
Confidence 589999976 355677 99999999999999999876432 234444333 222211 11 3444532
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHH
Q 005902 125 RLDESKKGEIACATAGEARKWMEAFDQ 151 (671)
Q Consensus 125 ~~~~~~~~~laa~~~eea~~W~~a~~~ 151 (671)
..++...|.|.|.+|...|++||++
T Consensus 66 --~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 66 --NENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred --CCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 2358899999999999999999974
No 42
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.73 E-value=1.1e-07 Score=88.52 Aligned_cols=95 Identities=13% Similarity=0.309 Sum_probs=68.4
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEeccC
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~~ 127 (671)
++|||++-|.. -..| ++|||||.++.|.|||.+-. ..|..+..+. +|.|+..-. .++. +.|.|+.+.+
T Consensus 2 k~G~L~K~~~~--~~~W-kkRwfvL~~~~L~yyk~~~~----~~~~g~I~L~-~~~v~~~~~---~~~~-~~F~i~~~~~ 69 (125)
T cd01252 2 REGWLLKQGGR--VKTW-KRRWFILTDNCLYYFEYTTD----KEPRGIIPLE-NVSIREVED---PSKP-FCFELFSPSD 69 (125)
T ss_pred cEEEEEEeCCC--CCCe-EeEEEEEECCEEEEEcCCCC----CCceEEEECC-CcEEEEccc---CCCC-eeEEEECCcc
Confidence 68999996643 3566 99999999999999995432 3455555555 455553211 1222 6788877665
Q ss_pred ------------------cCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 128 ------------------ESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 128 ------------------~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
..+.+.|.|.|.+|+..|+.||+.|+.
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 234567999999999999999999987
No 43
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.72 E-value=6e-08 Score=88.11 Aligned_cols=96 Identities=11% Similarity=0.157 Sum_probs=67.7
Q ss_pred eeeEEEEEc--cccccccceeeeeEEEeCceeeeeccCCCC--CC-CCccceeeeecCcceeecccceee---eCceEEE
Q 005902 48 YFGWVYHMG--TNSIGHEYCHLRFLFIRGKYVEMYKRDPHE--NP-GIKPIRRGVIGPTLMVEELGRRRF---NHGDVYV 119 (671)
Q Consensus 48 ~~Gw~y~~g--~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~--~~-~~~pir~~~i~~~~~v~d~Gr~~~---~~~~~yv 119 (671)
.|||||+-+ +.++|+.-.++|||||++..|.|||.++.. .| +.+||.. ..-|++..-+.. +.+.-|.
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~-----~~~ve~~~~~~~~~~~~~~~~~ 76 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSK-----IKCVETVKPEKNPPIPERFKYP 76 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCc-----ceEEEEecCCcCcccccccCcc
Confidence 589999986 445777444999999999999999987753 22 3444444 344543322221 2233478
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHH
Q 005902 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQ 151 (671)
Q Consensus 120 ~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~ 151 (671)
|.|... ++.+-|.|.|.+|...||+||++
T Consensus 77 F~i~t~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 77 FQVVHD---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEEEeC---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 888663 56788899999999999999986
No 44
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.71 E-value=5.3e-08 Score=89.38 Aligned_cols=96 Identities=20% Similarity=0.412 Sum_probs=57.0
Q ss_pred eeeEEEEEccccccccceeeeeEEEe-CceeeeeccCCCCCC--------CCccceeeeecCcce---eec----cccee
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIR-GKYVEMYKRDPHENP--------GIKPIRRGVIGPTLM---VEE----LGRRR 111 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~-~~~l~~yK~~p~~~~--------~~~pir~~~i~~~~~---v~d----~Gr~~ 111 (671)
+|||||+-+.. +|..| ++|||||+ +..|.|||- |.+.. ...=++.+-++...+ +.. +-+..
T Consensus 1 k~G~l~K~~~~-~~kgW-k~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGW-KKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcCc-cccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 69999997655 89999 99999999 999999997 32221 011222333332222 221 33455
Q ss_pred eeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 112 FNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 112 ~~~~~~yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
+|.+++++ ...++.+-|-|.+.+|-..|++||+.|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 66666665 456889999999999999999999876
No 45
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.68 E-value=1.1e-07 Score=84.72 Aligned_cols=91 Identities=10% Similarity=0.206 Sum_probs=65.1
Q ss_pred eeeEEEEEccccccccceeeeeEEEeC--ceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEec
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~--~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~ 125 (671)
++|||.+.|...+...| ++|||||++ ..|.|||.+.... |+..+-+...+.+.+...+ =+.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~~----p~G~I~L~~~~~~~~~~~~------~~~F~i~t- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDAK----PLGRVDLSGAAFTYDPREE------KGRFEIHS- 68 (95)
T ss_pred CcccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCccc----ccceEECCccEEEcCCCCC------CCEEEEEc-
Confidence 36999999987667788 999999984 5899999665444 4444444443333222111 13566654
Q ss_pred cCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 126 LDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 126 ~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
.++.+.|.|.|.+|...||+||+.+
T Consensus 69 --~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 --NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred --CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987
No 46
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.67 E-value=1.4e-07 Score=85.08 Aligned_cols=94 Identities=13% Similarity=0.257 Sum_probs=65.5
Q ss_pred eeeeEEEEEccccccccceeeeeEEEe-CceeeeeccCCCCCC-CCccceeeeecCcceee-cccceeeeCceEEEEEEE
Q 005902 47 EYFGWVYHMGTNSIGHEYCHLRFLFIR-GKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVE-ELGRRRFNHGDVYVMRLY 123 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g~~~~~~Ryfvl~-~~~l~~yK~~p~~~~-~~~pir~~~i~~~~~v~-d~Gr~~~~~~~~yv~~~y 123 (671)
.+||||.+-|. .=..| ++|||||+ +..|.|||.+|.+.+ +..|+....|.++.-+. |.. .-+.|.|-
T Consensus 2 ~k~G~L~K~g~--~~~~W-k~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~-------~~~~F~i~ 71 (102)
T cd01241 2 VKEGWLHKRGE--YIKTW-RPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERP-------RPNTFIIR 71 (102)
T ss_pred cEEEEEEeecC--CCCCC-eeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCC-------CcceEEEE
Confidence 48999999664 23345 99999999 788889999997664 37788887776643222 222 12556664
Q ss_pred ecc---CcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 124 NRL---DESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 124 n~~---~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
... ..++ ++.|.|.||...||+||+.+
T Consensus 72 ~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 72 CLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred eccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 211 1112 67799999999999999876
No 47
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.58 E-value=2.4e-07 Score=78.08 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=71.7
Q ss_pred eeeEEEEEccccc-cccceeeeeEEEeCceeeeeccCCCCCCC--CccceeeeecCcceeecccceeeeCceEEEEEEEe
Q 005902 48 YFGWVYHMGTNSI-GHEYCHLRFLFIRGKYVEMYKRDPHENPG--IKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (671)
Q Consensus 48 ~~Gw~y~~g~~~~-g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~--~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn 124 (671)
.+||+++.+.... +...-++|||+|.++.|.+|+.++...+. ..|+.... |....... +.-++|.|.+
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~------v~~~~~~~---~~~~~F~i~~ 71 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS------VEEDPDGS---DDPNCFAIVT 71 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE------EEECCCCC---CCCceEEEEC
Confidence 4799999887765 44455999999999999999988866643 34444332 44332221 2357888888
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 125 RLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 125 ~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
.....+.+.|-|.|.+|+..|++||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 72 KDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 8645789999999999999999999875
No 48
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.49 E-value=8.3e-07 Score=80.65 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=66.7
Q ss_pred eeEEEEEccccc-cc-cceeeeeEEEeCce-------eeeeccCCCCCCCCccceeeeecCcceeecccceee--eCceE
Q 005902 49 FGWVYHMGTNSI-GH-EYCHLRFLFIRGKY-------VEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF--NHGDV 117 (671)
Q Consensus 49 ~Gw~y~~g~~~~-g~-~~~~~Ryfvl~~~~-------l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~--~~~~~ 117 (671)
||||.+-|.... +. .| ++|||||.+.- |.|||.++. ..|...+-+.. |.+.+.|.... +...-
T Consensus 2 eGwL~K~~~~~~~~~~~W-krRwFvL~~~~l~~~~~~L~Yyk~~~~----~k~~g~I~L~~-~~~v~~~~~~~~~~~~~~ 75 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKW-VRRYFVLHCGDRERNLFALEYYKTSRK----FKLEFVIDLES-CSQVDPGLLCTAGNCIFG 75 (108)
T ss_pred ceeeeeCCccccccccCc-EEEEEEEeccccCCCcceEEEECCCCC----CccceEEECCc-cEEEcccccccccCcccc
Confidence 899999765432 33 56 99999999875 699996653 34555555555 44445443221 22334
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 118 yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
|+|+|.- ..+.+-|+|.|.||...||.+|.+.
T Consensus 76 ~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 76 YGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred eEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 7788873 5788999999999999999999764
No 49
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.38 E-value=1.3e-06 Score=78.75 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=61.5
Q ss_pred ccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEeccCcCcceeeecc
Q 005902 58 NSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACA 137 (671)
Q Consensus 58 ~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~laa~ 137 (671)
.+.+.+| ++|||+|.++.|.|||.+. . .|+-++.+..-.-|++.+-..... -|+|.|-.+ ++.+-|-|.
T Consensus 15 ~~~~~n~-KkRwF~Lt~~~L~Y~k~~~-~----~~~g~I~L~~i~~ve~v~~~~~~~--~~~fqivt~---~r~~yi~a~ 83 (98)
T cd01244 15 WKKVLHF-KKRYFQLTTTHLSWAKDVQ-C----KKSALIKLAAIKGTEPLSDKSFVN--VDIITIVCE---DDTMQLQFE 83 (98)
T ss_pred CccCcCC-ceeEEEECCCEEEEECCCC-C----ceeeeEEccceEEEEEcCCcccCC--CceEEEEeC---CCeEEEECC
Confidence 3566777 9999999999999999433 3 344444444455566555544332 278888664 578999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005902 138 TAGEARKWMEAFDQA 152 (671)
Q Consensus 138 ~~eea~~W~~a~~~a 152 (671)
|.+|+..||+||+.+
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999864
No 50
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.35 E-value=2.7e-06 Score=77.14 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=64.0
Q ss_pred eeeEEEEEccc-cccccceeeeeEEEeCceeeeeccCCCCCCCCccce-eeeecCcceeecccceeeeCceEEEEEEEec
Q 005902 48 YFGWVYHMGTN-SIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIR-RGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (671)
Q Consensus 48 ~~Gw~y~~g~~-~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir-~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~ 125 (671)
.||||-.=|.. +.=.+| |+|||||.|+.|.|||+++... |++ ++.+..+.-|..-....-+-..-+.|.|..
T Consensus 2 ~~G~l~k~~g~~r~~K~W-krRwF~L~~~~L~y~K~~~~~~----~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~t- 75 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKDD----PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFT- 75 (101)
T ss_pred cceEEeecCccceeeecc-eeEEEEEeCCEEEEEeccCccC----CCCceEEcccceEEeeccccccccccCcEEEEEc-
Confidence 47888664432 233477 8999999999999999887644 332 222223333332221111111136888854
Q ss_pred cCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 126 LDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 126 ~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
.++.+-|.|.|.+|+..||++|..|
T Consensus 76 --p~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 76 --ADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred --CCceEEEEeCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999887
No 51
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.33 E-value=1.5e-06 Score=78.34 Aligned_cols=88 Identities=9% Similarity=0.094 Sum_probs=65.3
Q ss_pred eEEEEEccccccccceeeeeEEEeC----ceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceE---EEEEE
Q 005902 50 GWVYHMGTNSIGHEYCHLRFLFIRG----KYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDV---YVMRL 122 (671)
Q Consensus 50 Gw~y~~g~~~~g~~~~~~Ryfvl~~----~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~---yv~~~ 122 (671)
||+..-|.+ .--.+ +.|||+|.+ +.|.|||..+... |+ .++-..++.|. .+|...+ |.|.|
T Consensus 3 G~l~K~g~~-~~K~w-K~rwF~l~~~~s~~~l~yf~~~~~~~----p~-gli~l~~~~V~-----~v~ds~~~r~~cFel 70 (98)
T cd01245 3 GNLLKRTKS-VTKLW-KTLYFALILDGSRSHESLLSSPKKTK----PI-GLIDLSDAYLY-----PVHDSLFGRPNCFQI 70 (98)
T ss_pred CccccCCCC-ccccc-ceeEEEEecCCCCceEEEEcCCCCCC----cc-ceeeccccEEE-----EccccccCCCeEEEE
Confidence 787775542 13466 899999998 9999999777544 43 23444677776 6777666 99999
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHH
Q 005902 123 YNRLDESKKGEIACATAGEARKWMEAFDQ 151 (671)
Q Consensus 123 yn~~~~~~~~~laa~~~eea~~W~~a~~~ 151 (671)
+++..| ....|+|.+ ||+.+||++|+.
T Consensus 71 ~~~~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ecCCCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 999875 455666666 999999999974
No 52
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.27 E-value=3.9e-06 Score=76.45 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=63.5
Q ss_pred eeeEEEEEcccc------ccccceeeeeEEEe-CceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEE
Q 005902 48 YFGWVYHMGTNS------IGHEYCHLRFLFIR-GKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (671)
Q Consensus 48 ~~Gw~y~~g~~~------~g~~~~~~Ryfvl~-~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~ 120 (671)
+.|||+.=+-.+ +.+.=-++|||||. +..|.|||.++. ...|...+-+..+..|.+ |-... ++ =+.|
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~---~~~p~G~IdL~~~~~V~~-~~~~~-~~-~~~f 74 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP---TTLPQGTIDMNQCTDVVD-AEART-GQ-KFSI 74 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC---CcccceEEEccceEEEee-ccccc-CC-ccEE
Confidence 579999876653 22222389999997 689999887642 234555555556666653 22211 11 3466
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHH
Q 005902 121 RLYNRLDESKKGEIACATAGEARKWMEAFD 150 (671)
Q Consensus 121 ~~yn~~~~~~~~~laa~~~eea~~W~~a~~ 150 (671)
+|- ..++..-|.|.|.||..+|+++|.
T Consensus 75 ~I~---tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 75 CIL---TPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EEE---CCCceEEEEeCCHHHHHHHHHHHH
Confidence 763 446899999999999999999985
No 53
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.26 E-value=7.5e-06 Score=73.74 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=67.4
Q ss_pred eeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEecc
Q 005902 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~ 126 (671)
.+|||+.+++... .-.+.|||+|-+..|-|+|.+|......--+|.-+=-..+.|++.- +...-|.|.|..+.
T Consensus 3 ikeG~L~K~~~~~---~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~~~~ 75 (101)
T cd01219 3 LKEGSVLKISSTT---EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVSGKQ 75 (101)
T ss_pred ccceEEEEEecCC---CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC----CCCcCceEEEecCC
Confidence 5799999887644 3458899999888999999765432112222222222336666431 23344667774443
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 127 DESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 127 ~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
+-+.+.|.|.||-.+||.||+.||+
T Consensus 76 ---rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 76 ---RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred ---cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999987
No 54
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.25 E-value=3.5e-06 Score=70.29 Aligned_cols=95 Identities=16% Similarity=0.253 Sum_probs=68.5
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecc-cceeeeCceEEEEEEEecc
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL-GRRRFNHGDVYVMRLYNRL 126 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~-Gr~~~~~~~~yv~~~yn~~ 126 (671)
++|||++....+ ..++ ++||++|.+..|.+|+..+... ...|.....|.. +.|... +.+ +.-+.|.|-+..
T Consensus 1 ~~G~l~~~~~~~-~~~w-~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~ 72 (96)
T cd00821 1 KEGYLLKKTGKL-RKGW-KRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPD 72 (96)
T ss_pred CcchhhhhhChh-hCCc-cEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCC
Confidence 589999966554 2344 9999999999999999777643 244555555655 444421 111 234777777665
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 127 DESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 127 ~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
+ +.+.|.|.|.+|+..|+.+|++|
T Consensus 73 ~--~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 73 G--RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred C--cEEEEEeCCHHHHHHHHHHHhcC
Confidence 4 88999999999999999999864
No 55
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.25 E-value=6e-06 Score=73.98 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=61.3
Q ss_pred eeeEEEE--E----ccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecC-cceeec-ccceeeeCceEEE
Q 005902 48 YFGWVYH--M----GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGP-TLMVEE-LGRRRFNHGDVYV 119 (671)
Q Consensus 48 ~~Gw~y~--~----g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~-~~~v~d-~Gr~~~~~~~~yv 119 (671)
|||+|+| . |+..-.+.| ++|||||.|..|.|||.+.... +.+.....|+- ++.|+- .. .-+.=++
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~W-k~r~~vL~~~~L~~ykd~~~~~--~~~~~~~~i~l~~~~i~~~~~----~~k~~~~ 73 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSW-DNVYGVLCGQSLSFYKDEKMAA--ENVHGEPPVDLTGAQCEVASD----YTKKKHV 73 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCc-ceEEEEEeCCEEEEEecCcccc--cCCCCCCcEeccCCEEEecCC----cccCceE
Confidence 5777773 1 444455667 9999999999999999654321 11111112221 344331 11 1122378
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 120 ~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
|+|-++ ..+.+.|.|.|.+|+..|+.||..|
T Consensus 74 F~l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 74 FRLRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEEEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 888865 4588999999999999999999753
No 56
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.16 E-value=8.3e-06 Score=76.36 Aligned_cols=105 Identities=15% Similarity=0.263 Sum_probs=73.8
Q ss_pred ceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcce--eecccceeeeCceEEEEEEE
Q 005902 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLM--VEELGRRRFNHGDVYVMRLY 123 (671)
Q Consensus 46 ~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~--v~d~Gr~~~~~~~~yv~~~y 123 (671)
++|.|+|..+..-+ |..--|+|||||+|..|.||| +|.+.+...|+-.+.+..++. |++--|+.....-=|.+++.
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 46889998765444 444459999999999998888 555565678998888888766 33333444444444666666
Q ss_pred eccCc---------------CcceeeeccCHHHHHHHHHHHHHH
Q 005902 124 NRLDE---------------SKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 124 n~~~~---------------~~~~~laa~~~eea~~W~~a~~~a 152 (671)
..... ..+.=|||.|.||-..|++||.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 44311 223568899999999999999864
No 57
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.16 E-value=1e-05 Score=75.29 Aligned_cols=80 Identities=11% Similarity=0.317 Sum_probs=63.4
Q ss_pred eeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceee--------eCceEEEEEEEeccCcCcceeeecc
Q 005902 66 HLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF--------NHGDVYVMRLYNRLDESKKGEIACA 137 (671)
Q Consensus 66 ~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~--------~~~~~yv~~~yn~~~~~~~~~laa~ 137 (671)
++|||||++.+|.|||.... ..|.--.++|.+..|+..+.+.+ +...-|.|+|-| .++++.|.|.
T Consensus 34 ~kRWFvlr~s~L~Y~~~~~~----~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R~~~l~a~ 106 (121)
T cd01254 34 QKRWFIVKESFLAYMDDPSS----AQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNRSLKLKCK 106 (121)
T ss_pred cceeEEEeCCEEEEEcCCCC----CceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCcEEEEEeC
Confidence 89999999999999994332 35666788899999987666411 123358888854 5789999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005902 138 TAGEARKWMEAFDQA 152 (671)
Q Consensus 138 ~~eea~~W~~a~~~a 152 (671)
|.+++..|+++|+.|
T Consensus 107 s~~~~~~Wi~~i~~a 121 (121)
T cd01254 107 SSRKLKQWMASIEDA 121 (121)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999999876
No 58
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.12 E-value=3.9e-05 Score=71.22 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=89.6
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEE
Q 005902 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYT 342 (671)
Q Consensus 263 a~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYv 342 (671)
....|++|+++||++|.|.+. -++|.+.+.++++++.-+.. ..++.... + + ...++|+....+ ..+. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~--~~~~~p~~~~~~vl~~~~~~-~~~~~~~~--~-~--~~~~~~~~~~~~--~~~~--~ 70 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVER--YPEFLPWCTASRVLERDEDE-LEAELTVG--F-G--GIRESFTSRVTL--VPPE--S 70 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHh--hhhhcCCccccEEEEcCCCE-EEEEEEEe--e-c--cccEEEEEEEEe--cCCC--E
Confidence 455899999999999999986 99999999999999988744 45555443 1 2 346788754333 2333 2
Q ss_pred EEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCcccccccc-ccchhhhHHHHHHHH
Q 005902 343 ILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQV 421 (671)
Q Consensus 343 Ia~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~w~p~~~-~~~~~~~~~~mL~~V 421 (671)
|...++.. +-...-+.|.++|+++ ++|+|+|.++.+++|.+ +.+. +.+-+..+.. .+
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~------~~T~v~~~~~~~~~~~l---~~~l~~~~~~~~~~~---~l 128 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGE------NACKVEFDLEFEFKSRL---LEALAGLVFDEVAKK---MV 128 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCC------CCEEEEEEEEEEECCHH---HHHHHHHHHHHHHHH---HH
Confidence 35555543 1122457999999885 67999999999999987 4332 2333333333 34
Q ss_pred HHHHHHHh
Q 005902 422 AGLKEYIG 429 (671)
Q Consensus 422 a~LRe~~~ 429 (671)
.+|++.+.
T Consensus 129 ~~f~~~~~ 136 (138)
T cd07813 129 DAFEKRAK 136 (138)
T ss_pred HHHHHHHh
Confidence 55555443
No 59
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.10 E-value=2.7e-05 Score=70.34 Aligned_cols=96 Identities=15% Similarity=0.259 Sum_probs=69.2
Q ss_pred eeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEecc
Q 005902 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~ 126 (671)
..|||+..+++.. .++|||+|=...|=|+++.+.....-. ++..+=-.++.|+|.-= ..++-+-|.||++
T Consensus 3 ikEG~L~K~~~k~-----~~~R~~FLFnD~LlY~~~~~~~~~~y~-~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSKKG-----LQQRMFFLFSDLLLYTSKSPTDQNSFR-ILGHLPLRGMLTEESEH---EWGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeCCC-----CceEEEEEccceEEEEEeecCCCceEE-EEEEEEcCceEEeeccC---CcCCceeEEEEcC-
Confidence 4799999987643 578999998888888888775431111 33444445566664211 1245678999955
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 127 DESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 127 ~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
.+.+.|.|.|.||-..||++|++||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 57799999999999999999999987
No 60
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.10 E-value=9.3e-06 Score=72.05 Aligned_cols=85 Identities=13% Similarity=0.337 Sum_probs=60.4
Q ss_pred eEEEEEccccccccceeeeeEEE--eCceeeeeccCCCCCC-CCccceeeeecCcceeecccceeeeCceEEEEEEEecc
Q 005902 50 GWVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (671)
Q Consensus 50 Gw~y~~g~~~~g~~~~~~Ryfvl--~~~~l~~yK~~p~~~~-~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~ 126 (671)
|||..=++++ +.-| ++||||| +.-.|.||+.+..... +.+||+.++|..+. ..+--.+--|..+|.|
T Consensus 1 G~llKkrr~~-lqG~-~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~--~~~~I~idsg~~i~hL------ 70 (89)
T PF15409_consen 1 GWLLKKRRKP-LQGW-HKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK--KSRRIDIDSGDEIWHL------ 70 (89)
T ss_pred Ccceeecccc-CCCc-eeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC--CCCEEEEEcCCeEEEE------
Confidence 7887744443 4455 9999999 9999999995544322 57899998887653 2222224445445544
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 127 DESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 127 ~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
=|.|.+|...|+.||+.|
T Consensus 71 --------Ka~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 71 --------KAKSQEDFQRWVSALQKA 88 (89)
T ss_pred --------EcCCHHHHHHHHHHHHhc
Confidence 389999999999999987
No 61
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.04 E-value=0.00013 Score=72.94 Aligned_cols=145 Identities=21% Similarity=0.216 Sum_probs=96.5
Q ss_pred cCCHHHHHHHHHcc-CCcccccccCCCCceEEEEee----------cCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEc
Q 005902 268 DASADTVFEVVLNL-ERHQRYEWDMLTGDLELVDSY----------DGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG 336 (671)
Q Consensus 268 daspe~Vfe~L~d~-~~~~R~eWD~~~~~~eVVE~l----------D~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~ 336 (671)
.++-++.-..|.+- .+ .-.++-+.+...++|+.. +....|++..++ +|++.++|||+.|-.....
T Consensus 13 ~~~~~~~~~~L~~~h~e-~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~ 88 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSE-NEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADL 88 (184)
T ss_pred CCCHHHHHHHHHhhhHH-HHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEecc
Confidence 45556665555532 11 234578888889999998 566677777666 5778999999998887654
Q ss_pred C---------CCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEe--eecCCCccccccc
Q 005902 337 Q---------DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE--IHSSGWCRWKKNS 405 (671)
Q Consensus 337 ~---------dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~q--vDlKGw~~w~p~~ 405 (671)
. ...++|++..+.|+.+|+.+|+|||.-. |==.|+.++... ++...-.|.|++- -|++|++ |.|
T Consensus 89 ~~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~-SVE~ire~p~~~-~~~~~~~veW~MaT~SdaGG~I---P~w 163 (184)
T PF11274_consen 89 PSKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYE-SVERIRELPDTK-DDDEEGPVEWIMATRSDAGGSI---PRW 163 (184)
T ss_pred CccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEE-EEEEEEEccCCC-CCCCCCcEEEEEEEeeCCCCcc---cHH
Confidence 4 2379999999999999999999999864 444555553210 0112334666555 4999999 666
Q ss_pred cccchhhhHHHHHHHHHH
Q 005902 406 STKFEKTTHFALLSQVAG 423 (671)
Q Consensus 406 ~~~~~~~~~~~mL~~Va~ 423 (671)
.. ...+..++..-|..
T Consensus 164 ~q--~~~~p~~Ia~DV~~ 179 (184)
T PF11274_consen 164 MQ--EMGTPGAIAKDVPK 179 (184)
T ss_pred HH--hccCcHHHHHHHHH
Confidence 32 23444444444433
No 62
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.01 E-value=0.00016 Score=67.20 Aligned_cols=142 Identities=14% Similarity=0.062 Sum_probs=84.2
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcE
Q 005902 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (671)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsY 341 (671)
+++..|++||++||++|.|.+. .++|.+.+.++++++.-++. ..+|+...-..+ ..+-+.-|.++. ...++...
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~--~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~v~~~~-~~~~~~~~ 75 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDN--LAEFIPNLAESRLLERNGNR-VVLEQTGKQGIL--FFKFEARVVLEL-REREEFPR 75 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhh--HHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEE--eeeeeEEEEEEE-EEecCCCc
Confidence 5677899999999999999986 89999999999999885443 334432111000 000001111111 11111011
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCccccccccccchhhhHHHHHHHH
Q 005902 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQV 421 (671)
Q Consensus 342 vIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~V 421 (671)
.+..+.+..+ + ...-+-|.++|.++ +++|+|+|-+++++++.+ |.+ ....-+...+...+
T Consensus 76 ~i~~~~~~g~--------~--~~~~g~w~~~~~~~-----~~~t~v~~~~~~~~~~~~---p~~--l~~~~~~~~~~~~l 135 (144)
T cd08866 76 ELDFEMVEGD--------F--KRFEGSWRLEPLAD-----GGGTLLTYEVEVKPDFFA---PVF--LVEFVLRQDLPTNL 135 (144)
T ss_pred eEEEEEcCCc--------h--hceEEEEEEEECCC-----CCeEEEEEEEEEEeCCCC---CHH--HHHHHHHHHHHHHH
Confidence 2222222111 1 22357899999874 257999999999999988 443 23333444455677
Q ss_pred HHHHHHHh
Q 005902 422 AGLKEYIG 429 (671)
Q Consensus 422 a~LRe~~~ 429 (671)
++||+.++
T Consensus 136 ~~lr~~ae 143 (144)
T cd08866 136 LAIRAEAE 143 (144)
T ss_pred HHHHHHHh
Confidence 78887654
No 63
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.94 E-value=4.8e-05 Score=68.41 Aligned_cols=96 Identities=19% Similarity=0.332 Sum_probs=69.2
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCC-CccceeeeecCcceeecccceeeeCceEEEEEEEecc
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPG-IKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~-~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~ 126 (671)
--|||=..+. +|..-=++.|+|||....|+|||.+-...|. +.|+ .|++|.|.--- +-++. +.|.+||+-
T Consensus 3 rkgwl~~~n~-~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpL------dnLk~Rdve~g-f~sk~-~~FeLfnpd 73 (110)
T cd01256 3 RKGWLSISNV-GIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPL------DGLKLRDIEGG-FMSRN-HKFALFYPD 73 (110)
T ss_pred eeeeEEeecc-ceecCCCcceEEEEecceeeeecccccccccceeec------cccEEEeeccc-ccCCC-cEEEEEcCc
Confidence 3589876333 3334457899999999999999987655543 4444 55555544311 23333 899999876
Q ss_pred C-----cCcceeeeccCHHHHHHHHHHHHHH
Q 005902 127 D-----ESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 127 ~-----~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
. ..++++|+|.|.||...||-+|-.|
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 3 3689999999999999999999876
No 64
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.87 E-value=6.6e-05 Score=68.59 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=64.0
Q ss_pred ccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEecc-CcCcceeeec
Q 005902 58 NSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL-DESKKGEIAC 136 (671)
Q Consensus 58 ~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~-~~~~~~~laa 136 (671)
.++..-=.++|||+|+|+.|.|||.++..+ ..|+=.+.--+|....|.- +- +.-|.+++-.+. +..+.+-|.|
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~---~~-~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVN---VA-QQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred chhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEccccc---cc-ccceEEEEecCCccCCeEEEEEC
Confidence 344433358999999999999999998766 4555444444444444430 00 113899998776 3346799999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 005902 137 ATAGEARKWMEAFDQAK 153 (671)
Q Consensus 137 ~~~eea~~W~~a~~~a~ 153 (671)
.|.++=++||.|++.|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999984
No 65
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=97.86 E-value=3.4e-06 Score=94.80 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=80.9
Q ss_pred CCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCcc
Q 005902 321 WQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR 400 (671)
Q Consensus 321 ~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~ 400 (671)
+++.|||+++| |.|+++..||+|...++-.| |||.+..+.|+|+|++. ++++|+||+.+|+||..
T Consensus 575 ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~------g~sr~~~i~r~dlkg~~- 639 (674)
T KOG2200|consen 575 PHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGG------GQSRVTHICRVDLKGRS- 639 (674)
T ss_pred CCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCC------cchhhhhhhhhhcccCC-
Confidence 57899999999 78999999999976666666 99999999999999986 67899999999999999
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHHhcCC
Q 005902 401 WKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 432 (671)
Q Consensus 401 w~p~~~~~~~~~~~~~mL~~Va~LRe~~~~~~ 432 (671)
+.||++-.+++|.. .++.+|+.|....
T Consensus 640 --~~wy~k~fg~~c~~---~~~~~r~sf~~~~ 666 (674)
T KOG2200|consen 640 --PEWYNKSFGHLCCL---EVARIRDSFHTLQ 666 (674)
T ss_pred --chhhhccccchhhh---hhcccchhhcccc
Confidence 89999999998754 8888888887643
No 66
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.61 E-value=0.00052 Score=63.94 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=70.5
Q ss_pred eeeEEEEE-------ccccccccceeeeeEEEeCceeeeeccCCCCCCC---CccceeeeecCcc-eeecccceeeeCce
Q 005902 48 YFGWVYHM-------GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPG---IKPIRRGVIGPTL-MVEELGRRRFNHGD 116 (671)
Q Consensus 48 ~~Gw~y~~-------g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~---~~pir~~~i~~~~-~v~d~Gr~~~~~~~ 116 (671)
+||+|+|= .+.++|..+=++||.||+|..|..||.+-...+. +.+-....|.+.+ .|. ....+.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia-----~dy~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRA-----SDYSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEee-----ccccCC
Confidence 36666652 1234544444999999999999999987431111 1222345566655 665 667777
Q ss_pred EEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 117 VYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 117 ~yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
=+||+|-.+. .+.+-|-|.+.||+..|+.+|..|+.
T Consensus 77 ~~VF~L~~~~--g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLRTAD--WREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEEcCC--CCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 8899998754 36788889999999999999998865
No 67
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00018 Score=75.16 Aligned_cols=97 Identities=18% Similarity=0.378 Sum_probs=73.1
Q ss_pred ceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCC-CccceeeeecCcceeecccceeeeCceEEEEEEEe
Q 005902 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPG-IKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (671)
Q Consensus 46 ~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~-~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn 124 (671)
++-|||+.++|.|+. .+| .+|+|||..++|+||.---+..|+ ++|+--+-| |+.-.-+.=+.|.|||
T Consensus 260 pdREGWLlKlgg~rv-ktW-KrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsi----------r~VedP~kP~cfEly~ 327 (395)
T KOG0930|consen 260 PDREGWLLKLGGNRV-KTW-KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSI----------REVEDPKKPNCFELYI 327 (395)
T ss_pred ccccceeeeecCCcc-cch-hheeEEeecceeeeeeeccCCCCCcceeccccce----------eeccCCCCCCeEEEec
Confidence 458999999999853 466 899999999999999766655654 455444333 1222334467899999
Q ss_pred ccCcCcce-------------------eeeccCHHHHHHHHHHHHHHHH
Q 005902 125 RLDESKKG-------------------EIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 125 ~~~~~~~~-------------------~laa~~~eea~~W~~a~~~a~~ 154 (671)
+.++..+| .|.|.|+||-..||++|.-++.
T Consensus 328 ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 328 PSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 98765544 5789999999999999999987
No 68
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.58 E-value=0.0023 Score=58.52 Aligned_cols=134 Identities=14% Similarity=0.058 Sum_probs=81.1
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCc-eEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCC
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH-YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG 339 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~-tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dG 339 (671)
+.....|++||++||++|.|.+. .++|.+.+.++++++.-+.. ....+..+... ..+. +|+. +. ...+.
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~--~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~-~~-~~~~~- 73 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEA--YPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY----GIKD-TYAL-EY-TWDGA- 73 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhh--hhhhCcceEEEEEeccCCCCCEEEEEEEEeee----eEEE-EEEE-EE-EEcCC-
Confidence 45566899999999999999986 99999999999988665432 23444333211 1211 3332 22 22222
Q ss_pred cEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCcccccccc-ccchhhhHHHHH
Q 005902 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALL 418 (671)
Q Consensus 340 sYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~w~p~~~-~~~~~~~~~~mL 418 (671)
..|..+++... +.....+.|.++|.++ .|+|+|-.+.+++|.+ +.+. +.+.+.+ ..
T Consensus 74 -~~i~~~~~~~~---------~~~~~~~~~~~~~~~~-------~t~vt~~~~~~~~~~~---~~~~~~~~~~~~---~~ 130 (140)
T cd07819 74 -GSVSWTLVEGE---------GNRSQEGSYTLTPKGD-------GTRVTFDLTVELTVPL---PGFLKRKAEPLV---LD 130 (140)
T ss_pred -CcEEEEEeccc---------ceeEEEEEEEEEECCC-------CEEEEEEEEEEecCCC---CHHHHHHhhhHH---HH
Confidence 22444444331 1122236799999763 5999999999999988 5442 2222222 24
Q ss_pred HHHHHHHHH
Q 005902 419 SQVAGLKEY 427 (671)
Q Consensus 419 ~~Va~LRe~ 427 (671)
..+.+||++
T Consensus 131 ~~~~~l~~~ 139 (140)
T cd07819 131 EALKGLKKR 139 (140)
T ss_pred HHHHhHhhh
Confidence 455666654
No 69
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.32 E-value=0.0041 Score=57.12 Aligned_cols=114 Identities=10% Similarity=-0.157 Sum_probs=69.9
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCc
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGs 340 (671)
++....+++||++||++|.|.+. ..+|.+.+.+.++++ ++.-.++...+. ++.+.|.-...+.....++..
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~--~~~w~p~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEV--LARCIPGCESLEKIG---PNEYEATVKLKV----GPVKGTFKGKVELSDLDPPES 73 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHH--HHhhccchhhccccC---CCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcE
Confidence 45667899999999999999986 889999888766553 343344443331 123333322233222233333
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCc
Q 005902 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (671)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~ 399 (671)
|.+-.... .+ .+.....+-|.++|. + ++|+|+|-.+++++|.+
T Consensus 74 ~~~~~~~~-~~--------~~~~~~~~~~~l~~~-~------~gT~v~~~~~~~~~g~l 116 (144)
T cd05018 74 YTITGEGK-GG--------AGFVKGTARVTLEPD-G------GGTRLTYTADAQVGGKL 116 (144)
T ss_pred EEEEEEEc-CC--------CceEEEEEEEEEEec-C------CcEEEEEEEEEEEccCh
Confidence 43432221 11 111233468899997 3 46999999999999976
No 70
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.23 E-value=0.0027 Score=59.42 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=71.5
Q ss_pred eeEEEEEcccc--ccccceeeeeEEEeC--ceeeeeccCCC-CCCCCccceeeeecCcceeecccceeeeC---ceEEEE
Q 005902 49 FGWVYHMGTNS--IGHEYCHLRFLFIRG--KYVEMYKRDPH-ENPGIKPIRRGVIGPTLMVEELGRRRFNH---GDVYVM 120 (671)
Q Consensus 49 ~Gw~y~~g~~~--~g~~~~~~Ryfvl~~--~~l~~yK~~p~-~~~~~~pir~~~i~~~~~v~d~Gr~~~~~---~~~yv~ 120 (671)
-.|||++.++. .+..=.|.|||.|.. ..|.-...+|. .++.+.=.+++.|+.=..|.|.-.-..-- .--|+|
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si 91 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI 91 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence 35999998876 234567999999999 55555566674 34445566788888888887662211111 022445
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 121 ~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
.|. ...+.++|.|.+.|++..|+++|+..++
T Consensus 92 ~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 92 IIV---TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred EEE---cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 444 3467999999999999999999987654
No 71
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.16 E-value=0.0075 Score=55.81 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=77.6
Q ss_pred EEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEE--EEEEEcCCCcE
Q 005902 264 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFS--RQWFRGQDGTY 341 (671)
Q Consensus 264 ~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~L--RswRr~~dGsY 341 (671)
..+|++||++||++|.|... -++|.+. ...++|+. ++....++.. . ...+++... ..+..+..+..
T Consensus 4 s~~i~ap~~~V~~~l~D~~~--~p~~~p~-~~~~~~~~-~~~~~~~~~~-~-------~~~~g~~~~~~~~~~~~~~~~~ 71 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAER--WPEFLPT-VHVERLEL-DGGVERLRMW-A-------TAFDGSVHTWTSRRVLDPEGRR 71 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHh--hhccCCC-ceEEEEEE-cCCEEEEEEE-E-------EcCCCcEEEEEEEEEEcCCCCE
Confidence 45899999999999999986 7789998 77887776 3444444421 1 111222221 11112332322
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCccccccccccchhhhHHHHHHHH
Q 005902 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQV 421 (671)
Q Consensus 342 vIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~V 421 (671)
|+...+.-+ +.. ...-+-|.++|.++ ++|+|+|.+..++++.+ +-.-....+.+...+-..+
T Consensus 72 -i~~~~~~~~------~~~--~~~~g~w~~~~~~~------~~t~Vt~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l 133 (142)
T cd08861 72 -IVFRQEEPP------PPV--ASMSGEWRFEPLGG------GGTRVTLRHDFTLGIDS---PEAVPWIRRALDRNSRAEL 133 (142)
T ss_pred -EEEEEeeCC------CCh--hhheeEEEEEECCC------CcEEEEEEEEEEECCCC---chhHHHHHHHHccccHHHH
Confidence 333333211 111 11245899999874 57999999999999887 3111122222333334456
Q ss_pred HHHHHHHh
Q 005902 422 AGLKEYIG 429 (671)
Q Consensus 422 a~LRe~~~ 429 (671)
++||+.++
T Consensus 134 ~~lk~~~E 141 (142)
T cd08861 134 AALRAAAE 141 (142)
T ss_pred HHHHHHhh
Confidence 67776654
No 72
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=96.96 E-value=0.031 Score=53.60 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=82.1
Q ss_pred EEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEE---EEcCCCc
Q 005902 264 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQW---FRGQDGT 340 (671)
Q Consensus 264 ~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRsw---Rr~~dGs 340 (671)
..+|++||++||++|.|... -++|.+.+.++++++. +++....-..+.... . .+ ...| +..+...
T Consensus 6 si~i~a~~~~v~~lvaDv~~--~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~~-----~--g~--~~~w~s~~~~~~~~ 73 (146)
T cd08860 6 SIVIDAPLDLVWDMTNDIAT--WPDLFSEYAEAEVLEE-DGDTVRFRLTMHPDA-----N--GT--VWSWVSERTLDPVN 73 (146)
T ss_pred EEEEcCCHHHHHHHHHhhhh--hhhhccceEEEEEEEe-cCCeEEEEEEEEecc-----C--CE--EEEEEEEEEecCCC
Confidence 34899999999999999996 9999999999999986 444344433322211 1 12 2233 2233334
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCccccccccccchhhhHHHHHHH
Q 005902 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (671)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~ 420 (671)
+.|.++ +.+. +|-. ..-+.|.++|++. + |+|++......++-.+....+ +.+.+-..+-..
T Consensus 74 ~~i~~~--~~~~-~p~~------~m~~~W~f~~~~~------g-T~V~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 134 (146)
T cd08860 74 RTVRAR--RVET-GPFA------YMNIRWEYTEVPE------G-TRMRWVQDFEMKPGAPVDDAA---MTDRLNTNTRAQ 134 (146)
T ss_pred cEEEEE--EecC-CCcc------eeeeeEEEEECCC------C-EEEEEEEEEEECCCCccchHH---HHHHHhcccHHH
Confidence 556554 2333 2321 2457899999864 3 999999999987533210112 222222223446
Q ss_pred HHHHHHHHhc
Q 005902 421 VAGLKEYIGA 430 (671)
Q Consensus 421 Va~LRe~~~~ 430 (671)
+++||...++
T Consensus 135 l~~Lk~~aE~ 144 (146)
T cd08860 135 MARIKKKIEA 144 (146)
T ss_pred HHHHHHHhhh
Confidence 7778777665
No 73
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.83 E-value=0.04 Score=50.30 Aligned_cols=107 Identities=11% Similarity=0.030 Sum_probs=67.3
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcE
Q 005902 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (671)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsY 341 (671)
.....|++|+++||++|.|... .++|.+.+.+++++.. . .. .+.++. |. ...++|..- .....++. .
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~--~~~w~~~~~~~~~~~~---~-~~-~~~~~~---~~-g~~~~~~~~-v~~~~~~~-~ 69 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFEN--LPRFMSHVESVEQLDD---T-RS-HWKAKG---PA-GLSVEWDAE-ITEQVPNE-R 69 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhh--hHHHhhhhcEEEEcCC---C-ce-EEEEec---CC-CCcEEEEEE-EeccCCCC-E
Confidence 4566899999999999999986 9999999888777643 1 11 122221 21 344566442 11222332 2
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCc
Q 005902 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (671)
Q Consensus 342 vIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~ 399 (671)
|.......+. . ..+-|.++|.++ ++|+|++.++.++.+.+
T Consensus 70 -i~~~~~~~~~--~---------~~~~~~f~~~~~------~~T~vt~~~~~~~~~~~ 109 (139)
T cd07817 70 -IAWRSVEGAD--P---------NAGSVRFRPAPG------RGTRVTLTIEYEPPGGA 109 (139)
T ss_pred -EEEEECCCCC--C---------cceEEEEEECCC------CCeEEEEEEEEECCcch
Confidence 3444433221 1 235566788764 57999999999999876
No 74
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=96.69 E-value=0.058 Score=48.90 Aligned_cols=137 Identities=16% Similarity=0.030 Sum_probs=79.2
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCc
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGs 340 (671)
++....|++|+++||++|.|.+. ...|.+.+.+.++++.-+ .....+..... .. ..+. -+. ...+.+.
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~--~~~w~~~~~~~~~~~~~~-~~g~~~~~~~~----~g---~~~~-~~i-~~~~~~~ 70 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGG--LHKWHPAVASCELEGGGP-GVGAVRTVTLK----DG---GTVR-ERL-LALDDAE 70 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCc--hhhhccCcceEEeecCCC-CCCeEEEEEeC----CC---CEEE-EEe-hhcCccC
Confidence 56677899999999999999886 789999888777765432 11112211111 01 1111 111 1112221
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCccccccccccchhhhHHHHHHH
Q 005902 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (671)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~ 420 (671)
..|....+.- . .+ .....+-|.++|.++ ++|+|+|-.+.+++|.+ +.. .+...+...+-..
T Consensus 71 ~~i~~~~~~~-~-~~------~~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~ 131 (140)
T cd07821 71 RRYSYRIVEG-P-LP------VKNYVATIRVTPEGD------GGTRVTWTAEFDPPEGL---TDE--LARAFLTGVYRAG 131 (140)
T ss_pred CEEEEEecCC-C-CC------cccceEEEEEEECCC------CccEEEEEEEEecCCCc---chH--HHHHHHHHHHHHH
Confidence 3344444321 0 11 112346789999775 47999999999999865 322 2334444445556
Q ss_pred HHHHHHHH
Q 005902 421 VAGLKEYI 428 (671)
Q Consensus 421 Va~LRe~~ 428 (671)
+++|++++
T Consensus 132 l~~L~~~~ 139 (140)
T cd07821 132 LAALKAAL 139 (140)
T ss_pred HHHHHHhh
Confidence 77787765
No 75
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=96.51 E-value=0.25 Score=44.72 Aligned_cols=135 Identities=15% Similarity=0.127 Sum_probs=75.5
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCc
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGs 340 (671)
+.....|+++|++||++|.|+.. ...|.+.+..++++. ++...+.. .+... +. .-+..+....++++.
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~--~~~w~~~~~~~~~~~--~~~~~~~~-~~~~~---g~----~~~~~~i~~~~~~~~ 71 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPEN--WPRWWPGVKSVELLS--GGGPGTER-TVRVA---GR----GTVREEITEYDPEPR 71 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTG--GGGTSTTEEEEEEEE--ECSTEEEE-EEEEC---SC----SEEEEEEEEEETTTT
T ss_pred EEEEEEECCCHHHHHHHHhChhh--hhhhhhceEEEEEcc--ccccceeE-EEEec---cc----cceeEEEEEecCCCc
Confidence 34556899999999999999886 778999888777666 23332222 22221 11 223333333334233
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCccccccccccchhhhHHHHHHH
Q 005902 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (671)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~w~p~~~~~~~~~~~~~mL~~ 420 (671)
.+ ..+.+ ..++..+ -..|.+.|.++ +|+|++..++++ |+.+|.. ...+...+-..+-..
T Consensus 72 ~~-~~~~~-------~~~~~~~---~~~~~~~~~~~-------gt~v~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~ 130 (139)
T PF10604_consen 72 RI-TWRFV-------PSGFTNG---TGRWRFEPVGD-------GTRVTWTVEFEP-GLPGWLA--GPLLRPAVKRIVREA 130 (139)
T ss_dssp EE-EEEEE-------SSSSCEE---EEEEEEEEETT-------TEEEEEEEEEEE-SCTTSCH--HHHHHHHHHHHHHHH
T ss_pred EE-EEEEE-------ecceeEE---EEEEEEEEcCC-------CEEEEEEEEEEE-eccchhh--HHHHHHHHHHHHHHH
Confidence 33 22222 1122222 45699999874 399999999998 6554321 112233333334455
Q ss_pred HHHHHHHH
Q 005902 421 VAGLKEYI 428 (671)
Q Consensus 421 Va~LRe~~ 428 (671)
+++|+..+
T Consensus 131 l~~l~~~~ 138 (139)
T PF10604_consen 131 LENLKRAA 138 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 66776654
No 76
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=96.13 E-value=0.031 Score=51.91 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=56.4
Q ss_pred eeeEEEE------Ecccc--ccccceeeeeEEEeCceeeeeccCCCC----C------CCCccceeeeecCcceeecccc
Q 005902 48 YFGWVYH------MGTNS--IGHEYCHLRFLFIRGKYVEMYKRDPHE----N------PGIKPIRRGVIGPTLMVEELGR 109 (671)
Q Consensus 48 ~~Gw~y~------~g~~~--~g~~~~~~Ryfvl~~~~l~~yK~~p~~----~------~~~~pir~~~i~~~~~v~d~Gr 109 (671)
.|||++| -|++. -.|+| +.=|.||.|..|.+||.+... . +...|+.+..|.+++--...+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~W-k~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSW-KQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---E-EEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCc-cEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 5899988 24333 46677 888999999999999973211 1 1124555555554443333332
Q ss_pred eeeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 005902 110 RRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 110 ~~~~~~~~yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~ 153 (671)
-+.=+||+|- .....+.-|-|.|.+|...|+.+|..++
T Consensus 81 ----~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 ----TKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp ----TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ----ccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 2233466664 3346789999999999999999998774
No 77
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=96.12 E-value=0.13 Score=46.75 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=72.3
Q ss_pred ecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEe
Q 005902 267 IDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQF 346 (671)
Q Consensus 267 Vdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvIa~~ 346 (671)
|++||++||++|.|.+. -++|-+.+.++++++.-++++.+.. .... ...++.|+.-...... .. +...
T Consensus 1 V~ap~~~V~~~i~D~e~--~~~~~p~~~~v~vl~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~--~~--~~~~ 68 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN--YPRFFPPVKEVRVLERDGDGMRARW-EVKF-----GGIKRSWTSRVTEDPP--ER--IRFE 68 (130)
T ss_dssp ESS-HHHHHHHHTTGGG--HHHHCTTEEEEEEEEEECCEEEEEE-EECT-----TTTCEEEEEEEEEECT--TT--EEEE
T ss_pred CCCCHHHHHHHHHHHHH--HHHhCCCCceEEEEEeCCCeEEEEE-EEec-----CCEEEEEEEEEEEEEe--ee--eeee
Confidence 68999999999999986 8999999999999999988655533 2221 2334566543333222 22 2222
Q ss_pred eccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCc
Q 005902 347 PAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (671)
Q Consensus 347 SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~ 399 (671)
.+. |-. ...-+.|.++|.+++ +++.+|.+++.+.+++++.+
T Consensus 69 ~~~--------g~~--~~~~g~W~~~~~~~~--~~g~~~~v~~~~~~~~~~~~ 109 (130)
T PF03364_consen 69 QIS--------GPF--KSFEGSWRFEPLGGN--EGGTRTRVTYDYEVDPPGPL 109 (130)
T ss_dssp SSE--------TTE--EEEEEEEEEEEETTE--CCEEEEEEEEEEEEETSSSS
T ss_pred ecC--------CCc--hhcEEEEEEEECCCC--cCCCEEEEEEEEEEecCcHh
Confidence 221 112 223578999998841 12468999999999999999
No 78
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.11 E-value=0.083 Score=48.83 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=75.3
Q ss_pred eeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecc--cceee-eCceEEEEEEE
Q 005902 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL--GRRRF-NHGDVYVMRLY 123 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~--Gr~~~-~~~~~yv~~~y 123 (671)
.|+|=+.++..++ -..+.|+|+|=.++|=|=|++-... ++.=.|.-+.-..|.|+|+ |++.. +..+-+-|.||
T Consensus 3 i~~Gel~~~s~~~---g~~q~R~~FLFD~~LI~CKkd~~r~-~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 3 FLQGEATRQKQNK---GWNSSRVLFLFDHQMVLCKKDLIRR-DHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred eEeeeEEEEeccc---CCcccEEEEEecceEEEEecccccC-CcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 3677777766432 1345899999999999999764322 4666778888888999887 65553 23456789999
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHH
Q 005902 124 NRLDESKKGEIACATAGEARKWMEAFDQ 151 (671)
Q Consensus 124 n~~~~~~~~~laa~~~eea~~W~~a~~~ 151 (671)
|... .+.+.+-|.|+||-.+||+||..
T Consensus 79 ~~~~-~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SEST-DEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EcCC-CeEEEEEECCHHHHHHHHHHHHH
Confidence 9853 67799999999999999999964
No 79
>PRK10724 hypothetical protein; Provisional
Probab=96.01 E-value=0.18 Score=49.20 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=76.4
Q ss_pred cEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCC
Q 005902 259 VLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQD 338 (671)
Q Consensus 259 ~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~d 338 (671)
+.++...+|++|++++|++|.|.+. -++|=+.+.+++++++-++.. +...+.. + .+ . ..-|..-..+ ..+
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~Dve~--yp~flp~~~~s~vl~~~~~~~-~a~l~v~--~-~g-~-~~~f~srv~~--~~~ 84 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVNDVQS--YPQFLPGCTGSRVLESTPGQM-TAAVDVS--K-AG-I-SKTFTTRNQL--TSN 84 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHH--HHHhCcccCeEEEEEecCCEE-EEEEEEe--e-CC-c-cEEEEEEEEe--cCC
Confidence 3466777999999999999999986 899999999999999976653 2221111 1 11 1 2234433333 233
Q ss_pred CcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCc
Q 005902 339 GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (671)
Q Consensus 339 GsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~ 399 (671)
. -|....++.| - + .+-+.|.++|.++ ++|+|++-++..++-.+
T Consensus 85 ~--~I~~~~~~Gp----F----~--~l~g~W~f~p~~~------~~t~V~~~l~fef~s~l 127 (158)
T PRK10724 85 Q--SILMQLVDGP----F----K--KLIGGWKFTPLSQ------EACRIEFHLDFEFTNKL 127 (158)
T ss_pred C--EEEEEecCCC----h----h--hccceEEEEECCC------CCEEEEEEEEEEEchHH
Confidence 3 2444555432 1 1 2578999999875 46999999999988877
No 80
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.64 E-value=0.018 Score=62.34 Aligned_cols=101 Identities=19% Similarity=0.313 Sum_probs=67.7
Q ss_pred CcceeeeEEEEEccccccccceeeeeEEEe--CceeeeeccCCCCC-CCCccceeeeecC-cceeecccceeeeCceEEE
Q 005902 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIR--GKYVEMYKRDPHEN-PGIKPIRRGVIGP-TLMVEELGRRRFNHGDVYV 119 (671)
Q Consensus 44 ~~~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~--~~~l~~yK~~p~~~-~~~~pir~~~i~~-~~~v~d~Gr~~~~~~~~yv 119 (671)
..++.|||+-+-|-. =+.| |+|||+|. |.++ =||.+|++. |...|+---.|-. -+|-.|+-|-.. +.|
T Consensus 13 ~~vvkEgWlhKrGE~--IknW-RpRYF~l~~DG~~~-Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPnt----Fii 84 (516)
T KOG0690|consen 13 EDVVKEGWLHKRGEH--IKNW-RPRYFLLFNDGTLL-GYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPNT----FII 84 (516)
T ss_pred hhhHHhhhHhhcchh--hhcc-cceEEEEeeCCceE-eeccCCccCCCCcccccchhhhhhhhhhccCCCCce----EEE
Confidence 456799999874432 2456 99999996 4555 689999774 3457777655544 456666666543 444
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 120 ~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
=|+-=..- =--++.+.|++|-..|++||+.++.
T Consensus 85 RcLQWTTV--IERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 85 RCLQWTTV--IERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred Eeeeeeee--eeeeeecCCHHHHHHHHHHHHHHhh
Confidence 44321110 1127899999999999999998876
No 81
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.48 E-value=0.037 Score=51.48 Aligned_cols=51 Identities=14% Similarity=0.299 Sum_probs=34.4
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceee
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVE 105 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~ 105 (671)
+||||+|+-..- .--+++|++|..|.+.||+.+-.. .|.|-+....=+.|+
T Consensus 2 kEGWmVHyT~~d---~~rKRhYWrLDsK~Itlf~~e~~s----kyyKeIPLsEIl~V~ 52 (117)
T cd01239 2 KEGWMVHYTSSD---NRRKKHYWRLDSKAITLYQEESGS----RYYKEIPLAEILSVS 52 (117)
T ss_pred ccceEEEEecCc---cceeeeEEEecCCeEEEEEcCCCC----eeeEEeehHHheEEe
Confidence 599999975543 233678999999999999976533 344444444444444
No 82
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.76 E-value=0.77 Score=41.38 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=30.0
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEE
Q 005902 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 300 (671)
Q Consensus 263 a~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE 300 (671)
....|++||++||++|.|... .++|.+.+..++.+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~~--~~~w~~~~~~~~~~~ 38 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFEN--APEWDPGVVEVEKIT 38 (140)
T ss_pred eEEEEcCCHHHHHHHHHCccc--hhhhccCceEEEEcC
Confidence 345799999999999999986 889999887766654
No 83
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.72 E-value=1.4 Score=38.33 Aligned_cols=113 Identities=14% Similarity=0.057 Sum_probs=64.6
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcE
Q 005902 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (671)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsY 341 (671)
+....|++|+++||+.|.|... ..+|.+.+..+++++.........+..... .....++ ..+.+.....-.+
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~v~~~~~~~~~ 73 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER--WPEWSPGLERVEVLGGGEGGVGARFVGGRK-----GGRRLTL-TSEVTEVDPPRPG 73 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh--hhhhCcccceEEEcCCCCccceeEEEEEec-----CCccccc-eEEEEEecCCCce
Confidence 3456899999999999999886 889999998888876532221221111100 0011111 1111111111111
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCc
Q 005902 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (671)
Q Consensus 342 vIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~ 399 (671)
.....+-.+. ......|.+.|.++ .+|+|++-...+++++.
T Consensus 74 ~~~~~~~~~~-----------~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 74 RFRVTGGGGG-----------VDGTGEWRLEPEGD------GGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EEEEecCCCC-----------cceeEEEEEEECCC------CcEEEEEEEEEecCCcc
Confidence 1111111111 12356788998764 47999999999999987
No 84
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.53 E-value=0.052 Score=49.72 Aligned_cols=98 Identities=16% Similarity=0.261 Sum_probs=61.7
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCce-----eeeeccCCCCCCCCccceeeeecCcceeec---ccceeeeCceEEE
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKY-----VEMYKRDPHENPGIKPIRRGVIGPTLMVEE---LGRRRFNHGDVYV 119 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~-----l~~yK~~p~~~~~~~pir~~~i~~~~~v~d---~Gr~~~~~~~~yv 119 (671)
++||||..|.+.+= .| ++|||||.+-- +..|+.+-.+....+-+-.-.||=+--... -|++.- |+.+
T Consensus 4 ~sGyL~k~Gg~~~K-kW-KKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~-gg~~-- 78 (117)
T cd01234 4 HCGYLYAIGKNVWK-KW-KKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQ-GGRH-- 78 (117)
T ss_pred eeEEEEeccchhhh-hh-heeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccc-cchh--
Confidence 89999998886543 45 89999999532 234554433221222233333332211111 122222 4433
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 120 ~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
++|...+.+.+.+|+.+..|---|+.|+=.|
T Consensus 79 --ff~avkegd~~~fa~~de~~r~lwvqa~yra 109 (117)
T cd01234 79 --FFNAVKEGDELKFATDDENERHLWVQAMYRA 109 (117)
T ss_pred --hhheeccCcEEEEeccchHHHHHHHHHHHHH
Confidence 3578888999999999999999999999888
No 85
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.52 E-value=0.4 Score=43.94 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=59.8
Q ss_pred ceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCC----CCCccceeeeecCcceeecccceeeeCceEEEEE
Q 005902 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN----PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (671)
Q Consensus 46 ~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~----~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~ 121 (671)
..+||=|..+-+.+ +..|||+|=...|=|=+..+..+ ....|+.. +.|++.-= ...+-..|.
T Consensus 4 li~eG~L~K~~rk~-----~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~------~~v~~~~d---~~~~~n~f~ 69 (104)
T cd01218 4 LVGEGVLTKMCRKK-----PKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEG------VQVESIED---DGIERNGWI 69 (104)
T ss_pred EEecCcEEEeecCC-----CceEEEEEecCEEEEEEeecCCceeeEeeEEEccc------eEEEecCC---cccccceEE
Confidence 34788887766333 35689999888885533322221 12334443 44432210 012345677
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHHHHH
Q 005902 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAKQQ 155 (671)
Q Consensus 122 ~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~~ 155 (671)
|.++ .+...+.|.|++|-..|+++|++||++
T Consensus 70 I~~~---~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 70 IKTP---TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred EecC---CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 7775 568899999999999999999999995
No 86
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=94.23 E-value=0.0025 Score=66.33 Aligned_cols=156 Identities=12% Similarity=-0.018 Sum_probs=105.1
Q ss_pred CEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEec
Q 005902 235 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYD 314 (671)
Q Consensus 235 W~l~~~kngVrVy~~~~~~~~~~~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~k 314 (671)
|.+....+-++++.+..+. ..+.+.++..+.+......-..+.-+.. +..|+.--.-...++.+..++++....+.
T Consensus 27 ~s~~k~~~~v~~~~~a~~~--~~~~i~~v~~~~~lf~~~~~~~i~~~~~--i~~~~~g~~v~~~~~~~~~~~~~~~s~~~ 102 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK--PKGNISRVRRFFCLFVTEDLVFISLLWL--IELLQNGPEVYNMLEKIQKNTDIWTSEFD 102 (241)
T ss_pred HHHHhhcceeEEeccCCcC--cCCcccccceeeccccccchheeecchh--hHHHhccchHHHHHHHHHhheeeeeEecH
Confidence 6666666666666664432 2233444444444433332222222222 33444443566777888888888886655
Q ss_pred CCcCCCCCCCCeEEEEEEEEEcCCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeee
Q 005902 315 PKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIH 394 (671)
Q Consensus 315 p~~~P~~vspRDFV~LRswRr~~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvD 394 (671)
... -..+++|+|+...+..+...+......++++++-++|...++|+..+++|++..|++.. +..+...--.+.|
T Consensus 103 ~~~-~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~----~~~~~~~~~~~~d 177 (241)
T KOG3845|consen 103 SFN-VDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE----PFILAWLREWFLD 177 (241)
T ss_pred hhh-hhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc----chhHHHHHHHHhh
Confidence 433 35789999999999998877767777889999999999999999999999999999973 3333334445778
Q ss_pred cCCCc
Q 005902 395 SSGWC 399 (671)
Q Consensus 395 lKGw~ 399 (671)
.+|..
T Consensus 178 ~rg~~ 182 (241)
T KOG3845|consen 178 LRGLP 182 (241)
T ss_pred cccCC
Confidence 88887
No 87
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.77 E-value=0.48 Score=44.06 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=65.7
Q ss_pred CcceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCC--CCCC----CccceeeeecCcceeecccceeeeCceE
Q 005902 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPH--ENPG----IKPIRRGVIGPTLMVEELGRRRFNHGDV 117 (671)
Q Consensus 44 ~~~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~--~~~~----~~pir~~~i~~~~~v~d~Gr~~~~~~~~ 117 (671)
....+||=+-.+.+.+ .-.+.|||+|=...|=|=|++.. +.|+ .-=+|.-+--..+.|.|+.= +...-
T Consensus 2 ~elI~EG~L~ki~~~~---~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~k 75 (112)
T cd01261 2 NEFIMEGTLTRVGPSK---KAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYK 75 (112)
T ss_pred ccccccCcEEEEeccc---CCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccC
Confidence 4456899998887554 23468999999999988786553 1211 12223333333334432210 11234
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 118 yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
+-|.|.++. .+-+.+-|.|+||-..||++|..++.
T Consensus 76 naF~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 76 NAFEIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred ceEEEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 567777653 34689999999999999999999875
No 88
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=92.91 E-value=4.5 Score=36.66 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=33.3
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEee
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 302 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~l 302 (671)
+.....|++|+++||+++.|+.. -++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVEN--WPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhh--cccccCcceEEEEecCC
Confidence 44566899999999999999886 88999988887776544
No 89
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.74 E-value=0.33 Score=45.11 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=67.2
Q ss_pred eeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEecc
Q 005902 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~ 126 (671)
+.|||||. +.-=..+| .+|||||+..=|.|+-+.-..+|+..--=...=+.|+-..=.|++.+..-.=|-|+|=..+
T Consensus 1 e~~g~Lyl--K~~gkKsW-Kk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~ 77 (114)
T cd01259 1 EMEGPLYL--KADGKKSW-KKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVG 77 (114)
T ss_pred CccceEEE--ccCCCccc-eEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccc
Confidence 36899998 32223356 9999999999998775554444331111122234455555567888888788888883333
Q ss_pred --Cc-Ccceee-eccCHHHHHHHHHHHHHHHH
Q 005902 127 --DE-SKKGEI-ACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 127 --~~-~~~~~l-aa~~~eea~~W~~a~~~a~~ 154 (671)
.. ++-|++ -|.+.+.-..|+-||+-|+-
T Consensus 78 ~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~Ky 109 (114)
T cd01259 78 DQSKGSQSIKYLCAEDLPTLDRWLTAIRIAKY 109 (114)
T ss_pred cCcccchhheeeccCCHHHHHHHHHHHHHHhh
Confidence 22 466655 55566666789999998854
No 90
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.59 E-value=0.5 Score=44.22 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=64.7
Q ss_pred eeeeeEEEeCceeeeeccCCCCC-CCCccceeeeecCcceeecccceeee---CceEEEEEEEeccCcCcceeeeccCHH
Q 005902 65 CHLRFLFIRGKYVEMYKRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFN---HGDVYVMRLYNRLDESKKGEIACATAG 140 (671)
Q Consensus 65 ~~~Ryfvl~~~~l~~yK~~p~~~-~~~~pir~~~i~~~~~v~d~Gr~~~~---~~~~yv~~~yn~~~~~~~~~laa~~~e 140 (671)
.+.||.+|=.+.+=.=|+.-..- -.+--.|..+.-..++|+++...-.- ++--|.|-|-.+.. ...++|.|.|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~-~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQG-KTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCC-CccEEEEeCCHH
Confidence 56899999999888888663220 02355777888888888887533222 24556666666533 456999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005902 141 EARKWMEAFDQAKQ 154 (671)
Q Consensus 141 ea~~W~~a~~~a~~ 154 (671)
|-.+||+||+.|+.
T Consensus 99 ~K~kWm~al~~a~s 112 (116)
T cd01223 99 LRKKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999976
No 91
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.37 E-value=1.6 Score=41.16 Aligned_cols=106 Identities=12% Similarity=0.148 Sum_probs=74.4
Q ss_pred ceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCC--CCCCccceeeee-cCcceeeccc----ceeeeCceEE
Q 005902 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHE--NPGIKPIRRGVI-GPTLMVEELG----RRRFNHGDVY 118 (671)
Q Consensus 46 ~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~--~~~~~pir~~~i-~~~~~v~d~G----r~~~~~~~~y 118 (671)
..|||||=.=..+++.+-| -++|.|+.+.-+..|-..+.. .|...|.-.+-+ |+-..|.-.+ ..+-....=|
T Consensus 2 t~~EGwvkvP~~~~~krGW-~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKGW-QRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccCc-eEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 4699999776666777888 789999999999999865532 344666666666 6677764211 1111223348
Q ss_pred EEEEEecc----CcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 119 VMRLYNRL----DESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 119 v~~~yn~~----~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
||+|--.. -....+=|=|.|-.|-.+|..|+++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 99987643 12356678899999999999999876
No 92
>PF15408 PH_7: Pleckstrin homology domain
Probab=92.36 E-value=0.094 Score=46.47 Aligned_cols=92 Identities=16% Similarity=0.318 Sum_probs=62.4
Q ss_pred eeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeC--ceEEEEEEEecc
Q 005902 49 FGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNH--GDVYVMRLYNRL 126 (671)
Q Consensus 49 ~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~--~~~yv~~~yn~~ 126 (671)
||++|+.....| ++||.||.|+++-||-.|....-..--+|+-++. .-+|+ |-+..-. =.-|-|-.|...
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s-~Pm~~--~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVS-HPMVN--FSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhh-ccccc--ccccCCCCCeeEEEEEEecCC
Confidence 799999887765 7899999999999999887443223334444332 22333 4444433 233455555554
Q ss_pred CcCcceeeeccCHHHHHHHHHHHH
Q 005902 127 DESKKGEIACATAGEARKWMEAFD 150 (671)
Q Consensus 127 ~~~~~~~laa~~~eea~~W~~a~~ 150 (671)
.+++++=|.|.|-..+|+.++.
T Consensus 73 --~~~~~~FA~S~~~~~~Wi~~mN 94 (104)
T PF15408_consen 73 --RRHVQCFASSKKVCQSWIQVMN 94 (104)
T ss_pred --cchhhhhhhHHHHHHHHHHHhc
Confidence 5778888999999999998874
No 93
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=92.17 E-value=0.35 Score=54.60 Aligned_cols=100 Identities=16% Similarity=0.302 Sum_probs=63.5
Q ss_pred CcceeeeEEEEEccccccccceeeeeEEEeCceeeee-ccCCCCC-CCCccceeeeecCcceeecccceeeeCceEEEEE
Q 005902 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMY-KRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (671)
Q Consensus 44 ~~~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~y-K~~p~~~-~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~ 121 (671)
+...++||++.++... .| ++|||.|.+..+.+. +..|... ....++...-|...|=|... ...++ =++|.
T Consensus 375 sDv~~~G~l~k~~~~~---~w-k~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~--~~~~~--~~~~~ 446 (478)
T PTZ00267 375 SDVTHGGYLYKYSSDM---RW-KKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEV--YSQKH--PNQLV 446 (478)
T ss_pred CCcccceEEeccCCCc---ch-hhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHH--hcCCC--CceEE
Confidence 4567999999987744 45 899999998777775 4455432 11233332235555544210 01111 34456
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 005902 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 122 ~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~ 153 (671)
|.++. .+++=+-|.|.+|-..||++|++|+
T Consensus 447 i~~~~--~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 447 LWFNN--GQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEecC--CcEEEEecCChHHHHHHHHHHHHHh
Confidence 65544 4477778899999999999999984
No 94
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.97 E-value=7.1 Score=36.30 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=31.4
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEE
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 300 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE 300 (671)
++...+|++|+++||++|.|+.. -++|++.+...+.++
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~--~~~W~p~~~~~~~~~ 41 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKN--WPEWSPWEKLDPDMK 41 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCccc--CcccCchhhcCcceE
Confidence 45566899999999999999986 889999887665554
No 95
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.85 E-value=7.4 Score=35.03 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=28.2
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEE
Q 005902 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLEL 298 (671)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eV 298 (671)
....+|++|+++||+.|.|... ...|.+.+..++.
T Consensus 3 ~~~~~i~ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~ 37 (141)
T cd07822 3 STEIEINAPPEKVWEVLTDFPS--YPEWNPFVRSATG 37 (141)
T ss_pred EEEEEecCCHHHHHHHHhcccc--ccccChhheeEec
Confidence 4566899999999999999886 8899976655444
No 96
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.30 E-value=1.8 Score=41.08 Aligned_cols=96 Identities=14% Similarity=0.221 Sum_probs=63.6
Q ss_pred eeeeEEEEEcccccc-----ccceeeeeEEEeCceeeeeccCCCCCCCCccceeeee-----cCcceeecccceee----
Q 005902 47 EYFGWVYHMGTNSIG-----HEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVI-----GPTLMVEELGRRRF---- 112 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g-----~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i-----~~~~~v~d~Gr~~~---- 112 (671)
+..|++-.+.-++.. +.-.+.|||+|=..+|=|=|++..+ +-.| -..+.|++..-...
T Consensus 4 vK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~--------~f~V~dy~~r~~l~V~~~e~~~~~~~~ 75 (125)
T cd01221 4 VKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS--------TFVVFDYAPRSFLRVEKIEPDNQKIPL 75 (125)
T ss_pred EEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC--------eEEEEeeccccceEEeecccccccccc
Confidence 356888887655432 1224679999999999887877522 2333 34555664432222
Q ss_pred -----eCceEEEEEE-EeccCcCcceeeeccCHHHHHHHHHHHH
Q 005902 113 -----NHGDVYVMRL-YNRLDESKKGEIACATAGEARKWMEAFD 150 (671)
Q Consensus 113 -----~~~~~yv~~~-yn~~~~~~~~~laa~~~eea~~W~~a~~ 150 (671)
...-+|.+++ -|...+...+.|-|.|.+|-.+||+||.
T Consensus 76 ~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 76 GSNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred cccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 3344555554 4556778889999999999999999984
No 97
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=91.28 E-value=5.1 Score=37.60 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=31.7
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEE
Q 005902 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 300 (671)
Q Consensus 263 a~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE 300 (671)
....|++||++||++|.|.+. -++|.+.+.++++++
T Consensus 5 ~~~~i~ap~e~Vw~~~tD~~~--~~~w~~~v~~~~~~~ 40 (146)
T cd07824 5 TVWRIPAPPEAVWDVLVDAES--WPDWWPGVERVVELE 40 (146)
T ss_pred EEEEecCCHHHHHHHHhChhh--cchhhhceEEEEEcc
Confidence 345899999999999999986 889999988888887
No 98
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.81 E-value=2 Score=39.00 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=66.9
Q ss_pred ceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEec
Q 005902 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (671)
Q Consensus 46 ~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~ 125 (671)
..+||-+...+. .+.||++|=.+.|=+=|+... .-=.|+-+.-.+.+|.|+ ..+. -+-|.|...
T Consensus 4 Llleg~l~~~~~-------~~eR~vFLFe~~ll~~K~~~~----~y~~K~~i~~~~l~i~e~----~~~d-~~~F~v~~~ 67 (97)
T cd01222 4 LLLEGRFREHGG-------GKPRLLFLFQTMLLIAKPRGD----KYQFKAYIPCKNLMLVEH----LPGE-PLCFRVIPF 67 (97)
T ss_pred eeeeceEEeecC-------CCceEEEEecccEEEEEecCC----eeEEEEEEEecceEEecC----CCCC-CcEEEEEec
Confidence 346666654333 356999998888877776542 455777777778888764 1122 366777666
Q ss_pred cCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 126 LDESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 126 ~~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
.....++++-|.|.|+-..|+++|+.|+.
T Consensus 68 ~~p~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 68 DDPKGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred CCCceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 55557999999999999999999999975
No 99
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.52 E-value=7.9 Score=36.32 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=28.6
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceE
Q 005902 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (671)
Q Consensus 263 a~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tD 307 (671)
....|++||+.||++|.|+.. -..|.+. ++.++.+++++-
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~--~~~~~pg---~~~~~~~~~~~~ 42 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIER--VAPCLPG---ASLTEVEGDDEY 42 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHH--HHhcCCC---ceeccccCCCeE
Confidence 345799999999999999875 5667654 555555665543
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.55 E-value=4 Score=38.06 Aligned_cols=94 Identities=10% Similarity=0.295 Sum_probs=63.4
Q ss_pred eeeeEEEEEccccc--cccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeee-C---------
Q 005902 47 EYFGWVYHMGTNSI--GHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFN-H--------- 114 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~--g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~-~--------- 114 (671)
.|||||=.=..++. ...| -++|.|+.+.-+..|-...... ..-|. .++| . +..+| +
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW-~r~yvVv~~~Kl~lYd~e~~~~-~~~p~--~vld-------l-~~~fhv~~V~asDVi~ 68 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGW-KKQYVVVSSRKILFYNDEQDKE-NSTPS--MILD-------I-DKLFHVRPVTQGDVYR 68 (112)
T ss_pred CcceeEEccCCCCccccCCc-eEEEEEEeCCEEEEEecCcccc-CCCcE--EEEE-------c-cceeeeecccHHHeee
Confidence 48999976444344 3456 7889999999999998555332 12232 2333 2 22444 2
Q ss_pred ---c-eEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 005902 115 ---G-DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 115 ---~-~~yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~ 153 (671)
+ .=|||+|--. .++..+=|=|.|.+|-.+|..||..-|
T Consensus 69 a~~kDiP~IF~I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 69 ADAKEIPKIFQILYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred cCcccCCeEEEEEeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 2 2388998664 446888888999999999999987543
No 101
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=87.37 E-value=0.53 Score=56.97 Aligned_cols=93 Identities=13% Similarity=0.292 Sum_probs=66.4
Q ss_pred eeeeEEEEEccccccccceeeeeEEEeC--ceeeeeccCCCCCCCCccceeeeecCc--ceeecccceeeeCceEEEEEE
Q 005902 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPT--LMVEELGRRRFNHGDVYVMRL 122 (671)
Q Consensus 47 ~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~--~~l~~yK~~p~~~~~~~pir~~~i~~~--~~v~d~Gr~~~~~~~~yv~~~ 122 (671)
.+||.+|+ +--+-.-| ..|||||.. ..|+||..--+..| +|+||-- --|.-.|-|++-.+-||=+..
T Consensus 1635 ~~eG~LyK--rGA~lK~W-k~RwFVLd~~khqlrYYd~~edt~p------kG~IdLaevesv~~~~~k~vdekgffdlkt 1705 (1732)
T KOG1090|consen 1635 IPEGYLYK--RGAKLKLW-KPRWFVLDPDKHQLRYYDDFEDTKP------KGCIDLAEVESVALIGPKTVDEKGFFDLKT 1705 (1732)
T ss_pred Ccccchhh--cchhhccc-ccceeEecCCccceeeecccccccc------cchhhhhhhhhhcccCccccCccceeeeeh
Confidence 38999999 44455566 899999975 67999986655443 3555421 123335667777777776644
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 005902 123 YNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 123 yn~~~~~~~~~laa~~~eea~~W~~a~~~a~ 153 (671)
..+...|-|.|+-+|..|++.|++|+
T Consensus 1706 -----t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1706 -----TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred -----hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 34456788999999999999999985
No 102
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.54 E-value=5.8 Score=36.59 Aligned_cols=95 Identities=11% Similarity=0.138 Sum_probs=56.6
Q ss_pred eeeEEEEEccccccccceeeeeEEEe--CceeeeeccCCCC---CCC--CccceeeeecCcceeecccceeeeCceEEEE
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIR--GKYVEMYKRDPHE---NPG--IKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~--~~~l~~yK~~p~~---~~~--~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~ 120 (671)
++||||.-..+++|-+|- +.|+... ++.+.|---.+.+ .++ ..+.+-+ |+.|++=. +-.-..=|-|
T Consensus 1 k~GYLy~~~k~~~~~~Wv-k~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~-l~sc~~r~-----~~~~dRRFCF 73 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWT-KYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLT-LKSCSRRK-----TESIDKRFCF 73 (104)
T ss_pred CCceEEEEcCCCCCCeEE-EEEEEEEcCCcEEEEEecccccccccCcccccceEEe-eeeccccc-----cCCccceeeE
Confidence 589999999999999995 4454433 3455443333332 101 1122211 12222211 1111224778
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHH
Q 005902 121 RLYNRLDESKKGEIACATAGEARKWMEAFD 150 (671)
Q Consensus 121 ~~yn~~~~~~~~~laa~~~eea~~W~~a~~ 150 (671)
.|-.+..+ ..++|=|.|..+-..||+|+.
T Consensus 74 ei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 74 DVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 88776665 569999999999999999985
No 103
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=86.10 E-value=3.3 Score=38.07 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=53.5
Q ss_pred CcceeeeEEEEEccccccccceeeeeEEEeCc-eeeeeccCCCCC--CCCccceeeeecCcceeecccceeeeCceEEEE
Q 005902 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGK-YVEMYKRDPHEN--PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (671)
Q Consensus 44 ~~~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~-~l~~yK~~p~~~--~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~ 120 (671)
....++|-+.+- . |+ |.++|-|+|.+. .|-|+. |... .+++| +...+.|+ ..+.+.++|-
T Consensus 11 e~Il~~g~v~K~--k--gl-~~kkR~liLTd~PrL~Yvd--p~~~~~KGeI~-----~~~~l~v~-----~k~~~~F~I~ 73 (104)
T PF14593_consen 11 ELILKQGYVKKR--K--GL-FAKKRQLILTDGPRLFYVD--PKKMVLKGEIP-----WSKELSVE-----VKSFKTFFIH 73 (104)
T ss_dssp --EEEEEEEEEE--E--TT-EEEEEEEEEETTTEEEEEE--TTTTEEEEEE-------STT-EEE-----ECSSSEEEEE
T ss_pred CeEEEEEEEEEe--e--ce-EEEEEEEEEccCCEEEEEE--CCCCeECcEEe-----cCCceEEE-----EccCCEEEEE
Confidence 445699999883 3 33 379999999988 776765 4332 12233 34677777 5665655443
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 005902 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (671)
Q Consensus 121 ~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~~~ 156 (671)
+ + .+.+-|-. ....|..|.++|++++.|+
T Consensus 74 t---p---~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 74 T---P---KRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp E---T---TEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred C---C---CcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 2 2 33344433 5567999999999998753
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=85.80 E-value=1.7 Score=51.30 Aligned_cols=101 Identities=17% Similarity=0.269 Sum_probs=71.5
Q ss_pred CcceeeeEEEEE--ccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEE
Q 005902 44 GYFEYFGWVYHM--GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (671)
Q Consensus 44 ~~~~~~Gw~y~~--g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~ 121 (671)
..+-.+|-|++. |+-++|...+.||||-|-+.-|.|=| .|... |+-++.+-.=.-||..--+++.++-+ |.
T Consensus 563 p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~K-sp~~q----~~~~Ipl~nI~avEklee~sF~~knv--~q 635 (800)
T KOG2059|consen 563 PVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAK-SPGKQ----PIYTIPLSNIRAVEKLEEKSFKMKNV--FQ 635 (800)
T ss_pred CceecccceEeccccccchhhhhhhheEEEeccceeEEec-CCccC----cccceeHHHHHHHHHhhhhccCCCce--EE
Confidence 345589999987 66778966679999999999998877 34333 44444443333455555566666544 33
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 122 ~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
|-..- +.+-+-|.+.-||..|+.+++.+..
T Consensus 636 VV~~d---rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 636 VVHTD---RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred EEecC---cceeEecCCchHHHHHHHHHHHHhc
Confidence 33222 5888889999999999999988755
No 105
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=85.34 E-value=30 Score=31.76 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=24.8
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCC
Q 005902 262 KAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (671)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~ 292 (671)
.....|++||++||++|.|... .++|++.
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~--~~~W~~~ 31 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRR--HPEIDGS 31 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccc--cceeCCC
Confidence 3455889999999999999986 9999864
No 106
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.97 E-value=3.9 Score=38.09 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=59.8
Q ss_pred cceeeeeEEEeCceeeeeccCCCCC----CCCccceeeeecCcceeecccceeeeCceEEEEEEEeccCcCcceeeeccC
Q 005902 63 EYCHLRFLFIRGKYVEMYKRDPHEN----PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACAT 138 (671)
Q Consensus 63 ~~~~~Ryfvl~~~~l~~yK~~p~~~----~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~laa~~ 138 (671)
+=.+.|||||=...|-+....|... -+..|++.+.|-.=...+ +.-+.|.|--+.- +.|.+-|.|
T Consensus 26 qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e---------~~~~aFeI~G~li--~~i~v~C~~ 94 (111)
T cd01225 26 EEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTE---------ALKNAFEISGPLI--ERIVVVCNN 94 (111)
T ss_pred cccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhcc---------CccceEEEeccCc--CcEEEEeCC
Confidence 3468999999999999999999553 157999988886533333 1156777776553 578888999
Q ss_pred HHHHHHHHHHHHH
Q 005902 139 AGEARKWMEAFDQ 151 (671)
Q Consensus 139 ~eea~~W~~a~~~ 151 (671)
.+|..+|++-|+.
T Consensus 95 ~~e~~~Wl~hL~~ 107 (111)
T cd01225 95 PQDAQEWVELLNA 107 (111)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 107
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=83.76 E-value=31 Score=32.50 Aligned_cols=111 Identities=13% Similarity=-0.032 Sum_probs=64.4
Q ss_pred EEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCcEEE
Q 005902 264 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTI 343 (671)
Q Consensus 264 ~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGsYvI 343 (671)
...|++++++|++.|.|+. .|=.++..++.+|.++++... -...+ . ++++.+=-..++....++...+.+
T Consensus 2 s~~v~a~~~~vw~~l~D~~-----~l~~ciPG~~~~e~~~~~~~~-~~~v~--v--G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPE-----NLARCIPGVESIEKVGDEYKG-KVKVK--V--GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEECS-HHHHHHHHT-HH-----HHHHHSTTEEEEEEECTEEEE-EEEEE--S--CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred cEEecCCHHHHHHHhcCHH-----HHHhhCCCcEEeeecCcEEEE-EEEEE--e--ccEEEEEEEEEEEEEcCCCcceEe
Confidence 4579999999999999844 688999999999999944332 22222 1 234443234444444444444443
Q ss_pred EEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCc
Q 005902 344 LQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (671)
Q Consensus 344 a~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~ 399 (671)
-...-.. .+...+... ..+...+. .. |.|+|-..+++.|.+
T Consensus 72 ~~~g~g~------~~~~~~~~~---~~~~~~~~-----~~-T~v~~~~~~~~~G~l 112 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASAN---ITLSLEDD-----GG-TRVTWSADVEVGGPL 112 (140)
T ss_dssp EEEEEEC------TCCEEEEEE---EEEEECCC-----TC-EEEEEEEEEEEECHH
T ss_pred eeeccCC------ccceEEEEE---EEEEcCCC-----CC-cEEEEEEEEEEccCH
Confidence 3332211 122333322 11233222 24 999999999999999
No 108
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=82.20 E-value=43 Score=31.91 Aligned_cols=120 Identities=12% Similarity=0.036 Sum_probs=72.3
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcCCCc
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~dGs 340 (671)
+..+..|++|++++++++.+........|-+.+.++++++-=++.-.|-...+.+. . .++ .+.-|--. .++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~----~-~~~-~~kE~l~~-~D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPG----G-KVK-YVKERIDA-VDEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCC----C-cce-EEEEEEEE-Ecccc
Confidence 45566899999999999999872124668888899998864233334555544331 1 111 12222212 23445
Q ss_pred EEEEEeeccCCCCC-CCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCc
Q 005902 341 YTILQFPAVHKKRP-PKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (671)
Q Consensus 341 YvIa~~SV~Hp~~P-p~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~ 399 (671)
..+.++-++-+-.. +- ....+-+-+.|.+. ++|.++|.+..++..-.
T Consensus 76 ~~~~y~vveg~~~~~~~------~~y~~t~~v~~~~~------~~t~v~Wt~~ye~~~~~ 123 (148)
T cd07816 76 KTYKYTVIEGDVLKDGY------KSYKVEIKFVPKGD------GGCVVKWTIEYEKKGDA 123 (148)
T ss_pred cEEEEEEEecccccCce------EEEEEEEEEEECCC------CCEEEEEEEEEEECCCC
Confidence 66666666543211 12 22346677788743 67999999999976653
No 109
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.88 E-value=3.7 Score=49.95 Aligned_cols=111 Identities=18% Similarity=0.348 Sum_probs=81.8
Q ss_pred cCCcceeeeEEEEEcc-ccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcce--eecccceeeeCceEE
Q 005902 42 EKGYFEYFGWVYHMGT-NSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLM--VEELGRRRFNHGDVY 118 (671)
Q Consensus 42 ~~~~~~~~Gw~y~~g~-~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~--v~d~Gr~~~~~~~~y 118 (671)
.+..++|-|.||.+.- ..+|- | |.|+-+|.|....|+| .|+|....+||-.+=.-.||. ||.--|++--..-=|
T Consensus 986 ~~idVEYrGFLtmfed~sgfGa-W-hRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntF 1062 (1116)
T KOG3640|consen 986 DAIDVEYRGFLTMFEDGSGFGA-W-HRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTF 1062 (1116)
T ss_pred cccceeeeeeeeeeeccCCCch-h-hhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccchhhhccCCcee
Confidence 3457779999988864 44554 6 9999999999999998 788887889998777777775 555444433333344
Q ss_pred EEEEEeccCc---------CcceeeeccCHHHHHHHHHHHHHHHHH
Q 005902 119 VMRLYNRLDE---------SKKGEIACATAGEARKWMEAFDQAKQQ 155 (671)
Q Consensus 119 v~~~yn~~~~---------~~~~~laa~~~eea~~W~~a~~~a~~~ 155 (671)
-+-++-++.. .-+.-|||.+.||-.-|+.+|-++..+
T Consensus 1063 hie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1063 HIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred EEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 5555555421 126789999999999999999999773
No 110
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=70.12 E-value=30 Score=32.31 Aligned_cols=89 Identities=13% Similarity=0.185 Sum_probs=59.4
Q ss_pred ceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEEEeccCc--CcceeeeccCHHH
Q 005902 64 YCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDE--SKKGEIACATAGE 141 (671)
Q Consensus 64 ~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~~~--~~~~~laa~~~ee 141 (671)
=.+.|.++|=...|=+=|..........| +-+.-..+.+.+.|.+-+-++.=.-|.|+.+... .+.+.+=|.|+|+
T Consensus 23 K~~eR~vFLFe~~lvfsk~~~~~~~~~~~--~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~ 100 (114)
T cd01232 23 KGRERRVFLFEQSIIFAKEVKKKKQFGNP--KYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQET 100 (114)
T ss_pred CCceeEEEEeeceEEEEEEeccCCCCCce--eEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHH
Confidence 34667777776666555543221100112 1333355566777776666666677888887764 5788999999999
Q ss_pred HHHHHHHHHHHHH
Q 005902 142 ARKWMEAFDQAKQ 154 (671)
Q Consensus 142 a~~W~~a~~~a~~ 154 (671)
-..|+..|.++.+
T Consensus 101 K~~W~~~I~~il~ 113 (114)
T cd01232 101 KQEWVKKIREILQ 113 (114)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999876
No 111
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=69.60 E-value=63 Score=31.66 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=71.3
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCc----eEEEEEEecCCcCCCCCCCCeEEEEEEEEEc
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH----YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG 336 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~----tDIvY~~~kp~~~P~~vspRDFV~LRswRr~ 336 (671)
+.....|..+|+++|+++.|... -++.=+.+...+|+++=..+ .+|.|..+ |.--.-|-..
T Consensus 4 ~~~s~lv~y~a~~mF~LV~dV~~--YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i-----------~e~F~Trv~~-- 68 (146)
T COG2867 4 IERTALVPYSASQMFDLVNDVES--YPEFLPWCSASRVLERNERELIAELDVGFKGI-----------RETFTTRVTL-- 68 (146)
T ss_pred eEeeeeccCCHHHHHHHHHHHHh--CchhccccccceEeccCcceeEEEEEEEhhhe-----------eeeeeeeeee--
Confidence 44556889999999999999885 88888999999998875333 22322211 1111111111
Q ss_pred CCCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCc
Q 005902 337 QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (671)
Q Consensus 337 ~dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~ 399 (671)
..+.-+|....+.-|= + -+.++|-+.|+.. ..|+|...+.-+.+..+
T Consensus 69 ~~~~~~I~~~l~~GPF---k-------~L~~~W~F~pl~~------~~ckV~f~ldfeF~s~l 115 (146)
T COG2867 69 KPTARSIDMKLIDGPF---K-------YLKGGWQFTPLSE------DACKVEFFLDFEFKSRL 115 (146)
T ss_pred cCchhhhhhhhhcCCh---h-------hhcCceEEEECCC------CceEEEEEEEeeehhHH
Confidence 1122255555544332 1 3568999999975 78999999999999887
No 112
>PLN02866 phospholipase D
Probab=69.51 E-value=17 Score=45.36 Aligned_cols=80 Identities=11% Similarity=0.285 Sum_probs=54.7
Q ss_pred eeeeEEEeCceeeeeccCCCCCCCCccceeeeecCc----------ceeecccceeeeCceEEEEEEEeccCcCcceeee
Q 005902 66 HLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPT----------LMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIA 135 (671)
Q Consensus 66 ~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~----------~~v~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~la 135 (671)
.||||||+..+|.|.+ +|.+. .|.-=+++|.. ..+....-|+ ...=|-|+|-|- +++++|=
T Consensus 219 ~k~w~v~k~~~l~~~~-~p~~~---~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~i~~~---~r~l~l~ 289 (1068)
T PLN02866 219 QKVWAVLKPGFLALLE-DPFDA---KPLDIIVFDVLPASNGNGEGQISLAKEIKER--NPLRFGFKVTCG---NRSIRLR 289 (1068)
T ss_pred heeEEEEeccEEEEEe-cCCCC---ceeEEEEEecccccccCCCcceeeccccccc--CCCcceEEEecC---ceEEEEE
Confidence 5799999999998875 56544 36666677732 2222221111 122346666543 6679999
Q ss_pred ccCHHHHHHHHHHHHHHHH
Q 005902 136 CATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 136 a~~~eea~~W~~a~~~a~~ 154 (671)
|.|..+|..|+.||++|..
T Consensus 290 ~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 290 TKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred ECCHHHHHHHHHHHHHHHh
Confidence 9999999999999999975
No 113
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=62.63 E-value=1.2e+02 Score=27.27 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.3
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCC
Q 005902 262 KAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (671)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~ 292 (671)
....+|++||++||++|.|... -+.|.+.
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~--~~~w~~~ 31 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPEL--LAQWFGP 31 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHH--HHhhhCc
Confidence 4456899999999999999875 7889875
No 114
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=61.23 E-value=6.3 Score=45.80 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=24.4
Q ss_pred cCCcceeeeEEEEEccccccccceeeeeEEEeCceeeeec
Q 005902 42 EKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYK 81 (671)
Q Consensus 42 ~~~~~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK 81 (671)
..++...||||+||-..- .--.+-|.-|..|.+.+|.
T Consensus 409 ksst~~kEGWmvHyt~~d---~lRkrHYWrldsk~itlfq 445 (888)
T KOG4236|consen 409 KSSTKLKEGWMVHYTSKD---NLRKRHYWRLDSKCITLFQ 445 (888)
T ss_pred cchhhhhcceEEEEechh---hhhhhhhheeccceeEeee
Confidence 345666999999996543 3323347778887776554
No 115
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=60.98 E-value=35 Score=31.21 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=50.1
Q ss_pred EEEEEccccccccceeeeeEEE--eCceeeeeccCCCCCC-----CCccceeeeecCcceeecccce--eeeCceEEEEE
Q 005902 51 WVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYKRDPHENP-----GIKPIRRGVIGPTLMVEELGRR--RFNHGDVYVMR 121 (671)
Q Consensus 51 w~y~~g~~~~g~~~~~~Ryfvl--~~~~l~~yK~~p~~~~-----~~~pir~~~i~~~~~v~d~Gr~--~~~~~~~yv~~ 121 (671)
.|.++.. ..-...|+|-| ++..|.+....+.... ...=||.|---.+-+......+ ..-.+ -|+
T Consensus 11 ~~~K~~~----~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~---~fT 83 (115)
T cd01248 11 VFIKWDD----TSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEER---CFT 83 (115)
T ss_pred EEEEEcC----CCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCcccc---EEE
Confidence 4555544 23456788988 5777866654432110 1233444443333332221111 12222 233
Q ss_pred E-EeccCcCcceeeeccCHHHHHHHHHHHHH
Q 005902 122 L-YNRLDESKKGEIACATAGEARKWMEAFDQ 151 (671)
Q Consensus 122 ~-yn~~~~~~~~~laa~~~eea~~W~~a~~~ 151 (671)
| |......+-+.|-|.|.++|..|...|..
T Consensus 84 Iiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 84 IVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 3 33322355699999999999999998863
No 116
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=59.81 E-value=29 Score=32.29 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=51.1
Q ss_pred cceeeeeEEEeCceeeeeccCCCCCCC-Cccceeee-ecCcceeecccc-ee-eeCceEEEEEEEeccCcC-cceeeecc
Q 005902 63 EYCHLRFLFIRGKYVEMYKRDPHENPG-IKPIRRGV-IGPTLMVEELGR-RR-FNHGDVYVMRLYNRLDES-KKGEIACA 137 (671)
Q Consensus 63 ~~~~~Ryfvl~~~~l~~yK~~p~~~~~-~~pir~~~-i~~~~~v~d~Gr-~~-~~~~~~yv~~~yn~~~~~-~~~~laa~ 137 (671)
+--++||++|+|+-+-.|+.-|.+.-. ..|.++-. ++--+||--.|. +. ..++. |.|.|= ..+- ..-.|...
T Consensus 17 ~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~-~~F~ir--tg~~vesh~fsVE 93 (108)
T cd01258 17 QRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRD-NCFLIR--TGTQVENHYLRVE 93 (108)
T ss_pred cccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCc-eEEEEE--cCCceeeEEEEec
Confidence 334899999999999999999986411 24444432 222334322221 10 11222 334332 2222 34467899
Q ss_pred CHHHHHHHHHHHHH
Q 005902 138 TAGEARKWMEAFDQ 151 (671)
Q Consensus 138 ~~eea~~W~~a~~~ 151 (671)
+.+|-+.|.+||.+
T Consensus 94 t~~dL~~W~raiv~ 107 (108)
T cd01258 94 THRDLASWERALVR 107 (108)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999975
No 117
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=59.11 E-value=1.6e+02 Score=30.58 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=76.5
Q ss_pred EEEEEEeecC--CHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEEcC
Q 005902 260 LVKAVGVIDA--SADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ 337 (671)
Q Consensus 260 ~~Ka~gvVda--spe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr~~ 337 (671)
+-|..-.|.- .=.+|...|+|++. -...|..+..++++...+++.-++.+..+... +-..|=|-.|..--...
T Consensus 60 I~K~~~~I~~pnkYneIIN~LWdpn~--~~~fn~~~ikgki~RvYnpNLvmiqqry~~~~---~~~~~YfyaLa~Kv~iS 134 (208)
T TIGR01599 60 IGKIHLTIQDPNKYDAIIKTLWDFND--NKKFGRKFIKGKVVRVYSPNLIMIQQRYKDAS---GSPNKYFYALATKVKVS 134 (208)
T ss_pred EEEEEEEecCchhHHHHHHHHhcccc--ccCCCchheeeeEEEEeCCCeEEEEeecCCCC---CCcceEEeEeeeeeecC
Confidence 4455555644 35678899999886 66789999999999999999999998877532 33445566665544445
Q ss_pred CCcEEEEEeeccCCCCCC--CCC--------------------------eeeEEEcCeeEEEEecCC
Q 005902 338 DGTYTILQFPAVHKKRPP--KSG--------------------------YRRTKINPSTWEIRSLNL 376 (671)
Q Consensus 338 dGsYvIa~~SV~Hp~~Pp--~~g--------------------------~VRAev~~sGylI~P~~~ 376 (671)
.++-+|+..|..--++-+ .+. .-.-.+.++||+|..-..
T Consensus 135 ed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d 201 (208)
T TIGR01599 135 EDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD 201 (208)
T ss_pred CCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC
Confidence 557888888887444322 111 233366889999998553
No 118
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=49.61 E-value=19 Score=33.26 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=32.8
Q ss_pred EEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEee
Q 005902 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 302 (671)
Q Consensus 263 a~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~l 302 (671)
.+..|++|+++||+.+.|... -+.|.+.+.+++++..-
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~--~~~~~p~~~~v~~~~~~ 40 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDN--LERLTPPWLEFAVLGRT 40 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcch--HHhcCCCCCCeEEEecC
Confidence 345799999999999999986 88999999999998643
No 119
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=47.80 E-value=1.8e+02 Score=28.10 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=59.9
Q ss_pred eeeeeEEEeCceeeeeccCCCCCC-CCccceeeeecCcceeecccceeeeCceEEEEEEEeccCcCcceeeeccCHHHHH
Q 005902 65 CHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEAR 143 (671)
Q Consensus 65 ~~~Ryfvl~~~~l~~yK~~p~~~~-~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~laa~~~eea~ 143 (671)
++.|+++|=.+.+=.=|+...... ...| +-+-=..+.+.+.|..-+-++.-.-|.|+.+.. ...+.+=|.|+|.-.
T Consensus 29 ~~eRhVFLFE~~viF~K~~~~~~~~~~~p--~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~ 105 (133)
T cd01227 29 PMQRHIFLHEKAVLFCKKREENGEGEKAP--SYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKA 105 (133)
T ss_pred CceeEEEEecceEEEEEEeccCCCCCcce--eEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHH
Confidence 457998888777766665521110 1122 123334445566666555555566677888764 679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005902 144 KWMEAFDQAKQQA 156 (671)
Q Consensus 144 ~W~~a~~~a~~~~ 156 (671)
.|++.|.+.+++|
T Consensus 106 ~Wv~~I~~iL~~Q 118 (133)
T cd01227 106 AWVNEIRKVLTSQ 118 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999944
No 120
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=47.41 E-value=50 Score=38.92 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCcCCcceeeeEEEEEccccccccceeeeeEEE--eCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceE
Q 005902 40 DKEKGYFEYFGWVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDV 117 (671)
Q Consensus 40 ~~~~~~~~~~Gw~y~~g~~~~g~~~~~~Ryfvl--~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~ 117 (671)
.|..+...+||++|--...+||.+| -|-|-+- |.+.++|---+-...-++-|.-+.+.-.|.|=. -+.+.. =
T Consensus 259 ~k~p~p~t~eGYlY~QEK~~~g~sW-vKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRk---tdSIdK--R 332 (812)
T KOG1451|consen 259 DKRPTPSTKEGYLYMQEKSKIGKSW-VKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRK---TDSIDK--R 332 (812)
T ss_pred ccCCCCcccceeeeehhhhhccchh-hhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCc---cccccc--c
Confidence 4666777899999999999999999 5556554 456666632222222124566666776776522 122322 3
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 118 yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
|-|.|- ..+....|+|-|-|.++-.-||+|..-|
T Consensus 333 FCFDve-~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 333 FCFDVE-VEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eeeeee-ecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 444443 3456789999999999999999998765
No 121
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=45.94 E-value=49 Score=29.81 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=42.6
Q ss_pred cccccceeeeeEEEeCc-eeeeeccCCCCC--CCCccceeeeecCcceeecccceeeeCceEEEEEEEeccCcCcceeee
Q 005902 59 SIGHEYCHLRFLFIRGK-YVEMYKRDPHEN--PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIA 135 (671)
Q Consensus 59 ~~g~~~~~~Ryfvl~~~-~l~~yK~~p~~~--~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~la 135 (671)
+-|+ |.|+|=|+|-.. .|.|+ +|... .+|+|+-+ -+++|+ ..+.+.++| ...++..-|-
T Consensus 10 r~gl-f~kkR~LiLTd~PrL~yv--dp~~~~~KgeIp~s~----~~l~v~-----~~~~~~F~I------~Tp~rty~le 71 (89)
T cd01262 10 RKGL-FAKKRQLILTNGPRLIYV--DPVKKVVKGEIPWSD----VELRVE-----VKNSSHFFV------HTPNKVYSFE 71 (89)
T ss_pred hhcc-ccceeeEEEecCceEEEE--cCCcCeEEeEecccc----cceEEE-----EecCccEEE------ECCCceEEEE
Confidence 3455 669999998653 33343 45432 14555544 156666 555555555 1222333331
Q ss_pred ccCHHHHHHHHHHHHHH
Q 005902 136 CATAGEARKWMEAFDQA 152 (671)
Q Consensus 136 a~~~eea~~W~~a~~~a 152 (671)
.-...|.+|+++|+++
T Consensus 72 -D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 72 -DPKGRASQWKKAIEDL 87 (89)
T ss_pred -CCCCCHHHHHHHHHHH
Confidence 2236799999999987
No 122
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=45.20 E-value=51 Score=38.74 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=59.6
Q ss_pred ceeeeEEEEEccccccccceeeeeEEEeCceeeeec---cCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEE
Q 005902 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYK---RDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (671)
Q Consensus 46 ~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK---~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~ 122 (671)
.-.||-++++-.+. .-.-.||+||=+..+-|-| +.|-.. -.+=-..-|++....++.-.+. ++.|++=.
T Consensus 272 LiKEG~l~Kis~k~---~~~qeRylfLFNd~~lyc~~r~~~~~~k--~~~r~~~s~~~~~v~~~~~~~~--~~tF~~~G- 343 (623)
T KOG4424|consen 272 LIKEGQLQKISAKN---GTTQERYLFLFNDILLYCKPRKRLPGSK--YEVRARCSISHMQVQEDDNEEL--PHTFILTG- 343 (623)
T ss_pred HhhccceeeeeccC---CCcceeEEEEehhHHHhhhhhhhcccce--eccceeeccCcchhcccccccC--CceEEEec-
Confidence 33899999987773 3447899999887665443 223221 1111122233333333221111 23333322
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 123 yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
+.+-++|.|.+.||-..|+.+|.+||+
T Consensus 344 -----~~r~vel~a~t~~ek~eWv~~I~~~Id 370 (623)
T KOG4424|consen 344 -----KKRGVELQARTEQEKKEWVQAIQDAID 370 (623)
T ss_pred -----ccceEEeecCchhhHHHHHHHHHHHHH
Confidence 678899999999999999999999999
No 123
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=44.05 E-value=31 Score=42.14 Aligned_cols=81 Identities=11% Similarity=0.256 Sum_probs=64.0
Q ss_pred cceeeeeEEEeCceeeeeccCCCCC-CCCccceeeeecCcceeecccceeeeCceEEEEEEEeccCcCcceeeeccCHHH
Q 005902 63 EYCHLRFLFIRGKYVEMYKRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGE 141 (671)
Q Consensus 63 ~~~~~Ryfvl~~~~l~~yK~~p~~~-~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~laa~~~ee 141 (671)
.+++.|||+|.|..|..||..-... -++-||.++.+=-++ +++..--..|-|+.| .+ -++.-+-|.+.-|
T Consensus 1049 ~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gv------kkklKpPt~wg~T~i--~e-khh~~l~cd~s~~ 1119 (1186)
T KOG1117|consen 1049 NKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGV------KKKLKPPTSWGFTAI--SE-KHHWYLCCDSSSE 1119 (1186)
T ss_pred CccceEEEEecCcEEEEeehhhccccccccccccceEEecc------ccccCCCCccceeee--ee-cceEEEecCCccc
Confidence 4669999999999999999776443 348999998875443 245556678999999 33 3488899999999
Q ss_pred HHHHHHHHHHH
Q 005902 142 ARKWMEAFDQA 152 (671)
Q Consensus 142 a~~W~~a~~~a 152 (671)
--.|+-.|--|
T Consensus 1120 ~~ewfts~fka 1130 (1186)
T KOG1117|consen 1120 QTEWFTSIFKA 1130 (1186)
T ss_pred cchhhhhhhhh
Confidence 99999998766
No 124
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=42.69 E-value=2.2e+02 Score=27.94 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=32.3
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceE
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tD 307 (671)
+.++-.|.+||++|++.|.|++. --.++.-++-+++.++...
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe~-----~a~ciPG~qs~e~~g~e~~ 44 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPEQ-----VAACIPGVQSVETNGDEYT 44 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHHH-----HHhhcCCcceeeecCCeEE
Confidence 34455799999999999999763 3457788899999887433
No 125
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=42.57 E-value=77 Score=29.77 Aligned_cols=102 Identities=13% Similarity=0.322 Sum_probs=68.8
Q ss_pred ceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeeccc--ceeeeCceEEEEEEE
Q 005902 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELG--RRRFNHGDVYVMRLY 123 (671)
Q Consensus 46 ~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~G--r~~~~~~~~yv~~~y 123 (671)
..++|.++.+| +++=-+| -+|||-|=+|.|+.|-..-...|. ++.-. .|+|.. -..+.|..-.+++|=
T Consensus 3 cIvhGyi~KLG-GPFls~W-Q~Ry~~LfPNRLE~~~~~~~~~~e------Li~M~--~i~~V~~e~~~iK~~~CI~ik~k 72 (116)
T cd01240 3 CIVHGYIKKLG-GPFLSQW-QTRYFKLYPNRLELYGESEANKPE------LITMD--QIEDVSVEFQQIKEENCILLKIR 72 (116)
T ss_pred eEEeeehhhhC-CHHHHHH-HHHHheeCcceeeecccccccCCc------EEEee--hhhhcchhheeeccCceEEEEEc
Confidence 45889988876 4555667 899999999999997443332322 11111 122222 223456666666665
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHHHh
Q 005902 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELS 161 (671)
Q Consensus 124 n~~~~~~~~~laa~~~eea~~W~~a~~~a~~~~~~~~~ 161 (671)
| ..++-|-|.+.=+-..|+..+++|-..++..+.
T Consensus 73 ~----~~k~vlt~~d~i~l~qW~~elr~a~r~Sq~ll~ 106 (116)
T cd01240 73 D----EKKIVLTNSDEIELKQWKKELRDAHRESQQLLQ 106 (116)
T ss_pred C----CceEEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 677888898888999999999999886666654
No 126
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=41.75 E-value=23 Score=43.31 Aligned_cols=97 Identities=13% Similarity=0.197 Sum_probs=68.4
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCC-CCCccceeeeecCcceeecccceeeeCceEEEEEEEecc
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~-~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~yn~~ 126 (671)
+.+++|.+-+........-+|||.+.+..+-|++|-=... ..++++|...|-++-=..| .-|-|.|-+
T Consensus 274 ~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~~d---------rr~CF~iiS-- 342 (785)
T KOG0521|consen 274 YRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQRD---------RRFCFEIIS-- 342 (785)
T ss_pred hhhhhhhhhhcccchhhHHhhhhhhhccccccccccccccccccccchhccccCCccccc---------ceeeEEEec--
Confidence 3344444323333333345599999999999999877666 5567777666655444322 257888888
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 005902 127 DESKKGEIACATAGEARKWMEAFDQAKQQA 156 (671)
Q Consensus 127 ~~~~~~~laa~~~eea~~W~~a~~~a~~~~ 156 (671)
+++-..+=|.|..+=..||++++..|.++
T Consensus 343 -~tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 343 -PTKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred -CCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 67778888999999999999999999855
No 127
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=39.98 E-value=87 Score=36.54 Aligned_cols=109 Identities=11% Similarity=0.173 Sum_probs=77.8
Q ss_pred CCcceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceeecccceeeeCceEEEEEE
Q 005902 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (671)
Q Consensus 43 ~~~~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~~ 122 (671)
...++|+|.+|.-+--|- +| .+=||||+..=|+|+-+--..+|+-.-.=..+=+.|+-+-=-|||.+.--.=|-|+|
T Consensus 314 ~~~pei~GfL~~K~dgkK--sW-Kk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~ 390 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDGKK--SW-KKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCI 390 (622)
T ss_pred CCCccccceeeecccccc--cc-eeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEe
Confidence 456789999998444332 34 788999999999887665555655333334455677777778899888888899988
Q ss_pred EeccC--cCcceeeec-cCHHHHHHHHHHHHHHHH
Q 005902 123 YNRLD--ESKKGEIAC-ATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 123 yn~~~--~~~~~~laa-~~~eea~~W~~a~~~a~~ 154 (671)
==.+. +.+.|+|=| .+.+.-..|+-||+-++-
T Consensus 391 K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 391 KPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred eeccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 64442 335676655 566667789999998865
No 128
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=39.82 E-value=33 Score=39.48 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=53.9
Q ss_pred eeeEEEEEcccccccccee---eeeEEEeCceeeeeccCCCCCC---CCccceeeeecCcceeecccceeeeCceEEEEE
Q 005902 48 YFGWVYHMGTNSIGHEYCH---LRFLFIRGKYVEMYKRDPHENP---GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~---~Ryfvl~~~~l~~yK~~p~~~~---~~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv~~ 121 (671)
--||+=+.|.=+-=-.|+| .|||||+.+.|.|||.+-...= +-.-+.+++|..+=-=|-+|-=.++
T Consensus 20 ~dgw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEfDe~rfdIsvn-------- 91 (611)
T KOG1739|consen 20 SDGWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEFDECRFDISVN-------- 91 (611)
T ss_pred cCCchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccchhheeeeEec--------
Confidence 4466655554443334444 8999999999999998764432 2355556666554322222222222
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 122 ~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
...-.|-|...+.-..|+++|+.-..
T Consensus 92 -------~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 92 -------DNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred -------cceeeehhcCcHHHHHHHHHHHHHhh
Confidence 22334456667777788888876644
No 129
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=36.26 E-value=52 Score=40.20 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=37.9
Q ss_pred CceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHHH
Q 005902 114 HGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVEL 160 (671)
Q Consensus 114 ~~~~yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~~~~~~~~ 160 (671)
....|||.+--+..-..-+.+||.+.|||-.|+.+|+++..-|+...
T Consensus 871 n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~tk~ 917 (1267)
T KOG1264|consen 871 NQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKADTKE 917 (1267)
T ss_pred CCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34678888876666667789999999999999999999987555433
No 130
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=34.00 E-value=1.4e+02 Score=27.03 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=50.0
Q ss_pred EeCceeeeeccCCCCCCCCccceeeeecCcceeecccceee--------eCceEEEEEEEecc-------------CcCc
Q 005902 72 IRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF--------NHGDVYVMRLYNRL-------------DESK 130 (671)
Q Consensus 72 l~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~d~Gr~~~--------~~~~~yv~~~yn~~-------------~~~~ 130 (671)
|-.-.+..|..+|... .=+|-- +..+.=|-|.|++++++ .+++++-..||... +.+.
T Consensus 4 l~~~~a~v~~~~~~~~-~W~~~~-~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~~ 81 (104)
T cd00837 4 ISTAVAQVYTADPSTG-KWVPAS-GGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDDNC 81 (104)
T ss_pred EEEEEEEEEEECCCCC-ceEECC-CCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcCCc
Confidence 4455667777777632 223421 44444455555555543 46666666766543 3345
Q ss_pred ceeeeccCHHHHHHHHHHHHHHH
Q 005902 131 KGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 131 ~~~laa~~~eea~~W~~a~~~a~ 153 (671)
++=|.-.|.+||....+++++|+
T Consensus 82 ~~GL~F~se~eA~~F~~~v~~~~ 104 (104)
T cd00837 82 VYGLNFASEEEAAQFRKKVLEAI 104 (104)
T ss_pred EEEEeeCCHHHHHHHHHHHHhcC
Confidence 66777789999999999988763
No 131
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=32.36 E-value=93 Score=38.37 Aligned_cols=97 Identities=19% Similarity=0.374 Sum_probs=66.0
Q ss_pred eeeEEEEEcccc-------ccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCccee--ecccceee-eCceE
Q 005902 48 YFGWVYHMGTNS-------IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMV--EELGRRRF-NHGDV 117 (671)
Q Consensus 48 ~~Gw~y~~g~~~-------~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v--~d~Gr~~~-~~~~~ 117 (671)
..|.+|---++- -+++=+.++|-||.|-.|+||..+-..-|. +.|..+=.| .-.=-+++ +-+++
T Consensus 494 ~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~------~lI~~~Eivclav~~pd~~pn~~~~ 567 (1186)
T KOG1117|consen 494 LCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPN------GLININEIVCLAVHPPDTYPNTGFI 567 (1186)
T ss_pred ccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCC------ceeeccceEEEeecCCCCCCCcCce
Confidence 338888643332 344555788999999999999987776654 222222111 10011121 45889
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 118 yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
|+|.||=..+ +-..+|+.+++++.+|-+|+-.+
T Consensus 568 f~fE~~l~~e--r~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 568 FIFEIYLPGE--RVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred eEEEEeeccc--ceEEeecccHHHHHHHHHHHHHh
Confidence 9999997765 77899999999999999998644
No 132
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=31.58 E-value=60 Score=39.72 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=32.3
Q ss_pred CcceeeeEEEEEccccccccceeeeeEEEeCceeeeeccCCCCC
Q 005902 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN 87 (671)
Q Consensus 44 ~~~~~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~ 87 (671)
+....+||+|. .+..|..+ +.|.|+|.+-+++||+-.-.++
T Consensus 75 ~~~~~~g~l~k--~~n~~~~~-~~r~f~l~~g~ls~~~~~~~~~ 115 (799)
T KOG1737|consen 75 SGASLEGILLK--WRNYSKGP-SSRWFVLSGGLLSYYFDNSFSK 115 (799)
T ss_pred ccccccceeec--cccccCCc-ccceEEecCcceeeeccCCccc
Confidence 34458999998 77777888 8899999999999998655444
No 133
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=30.40 E-value=55 Score=37.44 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=33.6
Q ss_pred eeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 005902 112 FNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (671)
Q Consensus 112 ~~~~~~yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a~ 153 (671)
...+.=|||-+.++-. +++-+=|.+.+|...||++|++++
T Consensus 450 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 450 TGSNAAHVFAVAFKTG--RRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred hCCCCCcEEEEEecCC--cEEEEecCCchhHHHHHHHHHHhc
Confidence 3444578999988764 789999999999999999999984
No 134
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=29.54 E-value=5e+02 Score=24.79 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=27.8
Q ss_pred ccEEEEEEeecCCHHHHHHHHHccCCcccccccC
Q 005902 258 GVLVKAVGVIDASADTVFEVVLNLERHQRYEWDM 291 (671)
Q Consensus 258 ~~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~ 291 (671)
...++...+|++||++||+.|.+.+. +.+|=.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~--l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPEL--LARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHH--HHhhcC
Confidence 35688888999999999999999875 888877
No 135
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=29.07 E-value=44 Score=39.23 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=59.0
Q ss_pred ccccccccceeeeeEEEeCceeeeeccCCCCCCCCccceeeeecCcceee-cccceeeeCceEEEEEEEeccCcCcceee
Q 005902 56 GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVE-ELGRRRFNHGDVYVMRLYNRLDESKKGEI 134 (671)
Q Consensus 56 g~~~~g~~~~~~Ryfvl~~~~l~~yK~~p~~~~~~~pir~~~i~~~~~v~-d~Gr~~~~~~~~yv~~~yn~~~~~~~~~l 134 (671)
|+=++=+.| +.|||.|.|-.|.|-|-+-.+..+.-||-=--|-+---|. .+|++.. .+.|=+|+- | +-+-|
T Consensus 746 GrWRf~kRW-~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rsl-pKAFEIFTA----D--~T~IL 817 (851)
T KOG3723|consen 746 GRWRFIKRW-KTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSL-PKAFEIFTA----D--KTYIL 817 (851)
T ss_pred cchhhhhhh-ccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhccc-chhhheeec----C--ceEEe
Confidence 333444567 8999999999999877554443333333211111111011 2344433 344555543 2 23777
Q ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHh
Q 005902 135 ACATAGEARKWMEAFDQAKQQAEVELS 161 (671)
Q Consensus 135 aa~~~eea~~W~~a~~~a~~~~~~~~~ 161 (671)
-|.+..-|++|.+.+.=|+.+|+....
T Consensus 818 KaKDeKNAEEWlqCL~IavAHa~~r~~ 844 (851)
T KOG3723|consen 818 KAKDEKNAEEWLQCLNIAVAHAKERES 844 (851)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999987765553
No 136
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=28.59 E-value=46 Score=33.79 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=79.6
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCCCCceEEEEeecCceEEEEEEecCCcCCCCCCCCeEEEEEEEEE----cC
Q 005902 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFR----GQ 337 (671)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~~~~~eVVE~lD~~tDIvY~~~kp~~~P~~vspRDFV~LRswRr----~~ 337 (671)
....+|+.|+++||.+..|++. .+.|-+++.+.+|+ |++- -+.+.+. | .-.-..|.- +.
T Consensus 73 ~~~V~I~kPae~vy~~W~dLe~--lP~~Mkhl~SVkVl---ddkr--SrW~~~a---p-------~g~~v~Wea~it~d~ 135 (217)
T COG5637 73 EVQVTIDKPAEQVYAYWRDLEN--LPLWMKHLDSVKVL---DDKR--SRWKANA---P-------LGLEVEWEAEITKDI 135 (217)
T ss_pred EEEEEeCChHHHHHHHHHhhhh--hhHHHHhhceeecc---CCCc--cceeEcC---C-------CCceEEEeehhhccC
Confidence 3344799999999999999996 99999998887765 4442 2222221 1 112224543 22
Q ss_pred CCcEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeeecCCCccccc-cccccch-hhhHH
Q 005902 338 DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKK-NSSTKFE-KTTHF 415 (671)
Q Consensus 338 dGsYvIa~~SV~Hp~~Pp~~g~VRAev~~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw~~w~p-~~~~~~~-~~~~~ 415 (671)
.| =.|.-.|+.-..+|-+ |.|| .++.++ .+|.|...+...+-||. . -..+++. +.--.
T Consensus 136 ~~-e~I~W~Sl~Ga~v~Ns-G~Vr---------F~~~pg------~~t~V~v~lsY~~Pgg~---~~a~va~~fgeepeq 195 (217)
T COG5637 136 PG-ERIQWESLPGARVENS-GAVR---------FYDAPG------DSTEVKVTLSYRPPGGL---LGAVVAKLFGEEPEQ 195 (217)
T ss_pred CC-cEEeeecCCCCcCCCC-ccEE---------eeeCCC------CceEEEEEEEecCCccH---HHHHHHHHhccchHH
Confidence 33 4677788866555433 6665 344443 45788888888888887 2 1112222 22333
Q ss_pred HHHHHHHHHHHHHhc
Q 005902 416 ALLSQVAGLKEYIGA 430 (671)
Q Consensus 416 ~mL~~Va~LRe~~~~ 430 (671)
++-.-+..+|+++..
T Consensus 196 qI~~DL~RFk~~~e~ 210 (217)
T COG5637 196 QIQDDLERFKEYQEN 210 (217)
T ss_pred HHHHHHHHHHHHHHc
Confidence 445566777777765
No 137
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=27.85 E-value=54 Score=29.51 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=24.3
Q ss_pred EEEEeecCCHHHHHHHHHccCCcccccccCC
Q 005902 262 KAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (671)
Q Consensus 262 Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~ 292 (671)
....+|++||++||+.|.|.+. -.+|...
T Consensus 3 ~~~~~i~ap~e~Vw~~~td~~~--~~~W~~~ 31 (136)
T cd08893 3 VYVTYIRATPEKVWQALTDPEF--TRQYWGG 31 (136)
T ss_pred EEEEEecCCHHHHHHHHcCchh--hhheecc
Confidence 3456899999999999999875 8889764
No 138
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.66 E-value=63 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=48.7
Q ss_pred eeeEEEEEccccccccceeeeeEEEeCceee--eeccCCCCC-CC-----CccceeeeecCcceeecccceeeeCceEEE
Q 005902 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVE--MYKRDPHEN-PG-----IKPIRRGVIGPTLMVEELGRRRFNHGDVYV 119 (671)
Q Consensus 48 ~~Gw~y~~g~~~~g~~~~~~Ryfvl~~~~l~--~yK~~p~~~-~~-----~~pir~~~i~~~~~v~d~Gr~~~~~~~~yv 119 (671)
-||-|+.+-+. -...|=|+|=+-.|- -||+.+... .. .+|+.-..|..- .
T Consensus 5 ~eg~lvel~~~-----~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----------------~ 62 (96)
T cd01228 5 KDSFLVELVEG-----SRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----------------P 62 (96)
T ss_pred ccceeeeehhC-----CCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch-----------------h
Confidence 35556654321 134566666665554 465554433 11 355554443322 2
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 120 ~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
|++.|+- .+-.++=|.|.+|-..||++|++-
T Consensus 63 ~~~~~~~--~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 63 FRIHNKN--GKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhccccC--CceEEEEecCHHHHHHHHHHHHHH
Confidence 7777554 677899999999999999999754
No 139
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=25.35 E-value=68 Score=30.65 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=27.1
Q ss_pred cEEEEEEeecCCHHHHHHHHHccCCcccccccC
Q 005902 259 VLVKAVGVIDASADTVFEVVLNLERHQRYEWDM 291 (671)
Q Consensus 259 ~~~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~ 291 (671)
..+....+|++||++||++|.|... ..+|..
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~--~~~W~~ 41 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPER--LARWFA 41 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHH--HHhhcC
Confidence 4577788999999999999999885 888988
No 140
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=24.32 E-value=1.3e+02 Score=28.91 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=29.6
Q ss_pred eeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 005902 112 FNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (671)
Q Consensus 112 ~~~~~~yv~~~yn~~~~~~~~~laa~~~eea~~W~~a~~~a 152 (671)
-..+.+|=|+|-+--.+...++|=|.|..+=.+|+++|+++
T Consensus 94 ~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 94 SDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp --TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 34588999999665544455999999999999999999986
No 141
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=23.52 E-value=1.6e+02 Score=27.57 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=37.5
Q ss_pred cceeeeCceEEEEEEEecc-------------CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 005902 108 GRRRFNHGDVYVMRLYNRL-------------DESKKGEIACATAGEARKWMEAFDQAKQ 154 (671)
Q Consensus 108 Gr~~~~~~~~yv~~~yn~~-------------~~~~~~~laa~~~eea~~W~~a~~~a~~ 154 (671)
|++...+++|+-..||+.. +...+.=|.-.|.+||.+..+++++|++
T Consensus 49 g~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~~~v~GLnF~Se~eA~~F~~~v~~Al~ 108 (111)
T cd01207 49 GRKLQDHQVVINCAIVKGLKYNQATPTFHQWRDARQVYGLNFGSKEDATMFASAMLSALE 108 (111)
T ss_pred EeecCCCcEEEEEEecCCceeeecCCcceeeecCCeEEeeccCCHHHHHHHHHHHHHHHH
Confidence 6666667777777777654 4456777888999999999999999987
No 142
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=23.05 E-value=77 Score=28.91 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.3
Q ss_pred EEEEEeecCCHHHHHHHHHccCCcccccccCC
Q 005902 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (671)
Q Consensus 261 ~Ka~gvVdaspe~Vfe~L~d~~~~~R~eWD~~ 292 (671)
++....|++||++||+++.+.+. -.+|...
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~--~~~W~~~ 32 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEH--FGQWFGV 32 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhh--hhhcccc
Confidence 45567899999999999999885 7789875
Done!