Query 005903
Match_columns 670
No_of_seqs 98 out of 107
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 15:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1003 Actin filament-coating 100.0 4.3E-34 9.3E-39 278.7 19.5 187 367-574 2-198 (205)
2 PF00261 Tropomyosin: Tropomyo 100.0 9E-29 1.9E-33 245.6 21.0 213 341-574 1-230 (237)
3 PF12718 Tropomyosin_1: Tropom 99.2 1.9E-10 4.1E-15 108.5 13.9 107 332-438 33-142 (143)
4 PF00261 Tropomyosin: Tropomyo 99.2 5E-10 1.1E-14 112.1 16.1 219 289-522 2-231 (237)
5 PRK02224 chromosome segregatio 99.1 6.2E-06 1.3E-10 95.1 44.9 186 335-528 510-700 (880)
6 PRK02224 chromosome segregatio 99.1 1.7E-05 3.7E-10 91.5 47.7 44 229-272 262-305 (880)
7 TIGR02168 SMC_prok_B chromosom 98.8 1.5E-05 3.3E-10 92.1 36.5 55 501-559 964-1018(1179)
8 TIGR02169 SMC_prok_A chromosom 98.8 3E-05 6.5E-10 90.4 39.0 33 529-561 981-1013(1164)
9 COG1196 Smc Chromosome segrega 98.8 6.7E-06 1.4E-10 98.7 33.7 259 335-600 766-1044(1163)
10 TIGR02169 SMC_prok_A chromosom 98.8 5.9E-05 1.3E-09 88.0 39.5 52 209-260 151-205 (1164)
11 TIGR00606 rad50 rad50. This fa 98.7 0.00044 9.5E-09 84.4 44.4 69 107-182 598-666 (1311)
12 TIGR02168 SMC_prok_B chromosom 98.7 0.00014 3E-09 84.4 36.9 57 498-554 968-1027(1179)
13 KOG0161 Myosin class II heavy 98.5 0.0047 1E-07 78.1 44.1 347 214-574 946-1327(1930)
14 KOG0161 Myosin class II heavy 98.4 0.0013 2.9E-08 82.7 37.7 101 461-568 1098-1209(1930)
15 TIGR00606 rad50 rad50. This fa 98.4 0.013 2.8E-07 71.9 45.4 43 229-271 588-630 (1311)
16 PRK03918 chromosome segregatio 98.4 0.013 2.8E-07 68.0 45.4 35 459-493 548-582 (880)
17 COG1196 Smc Chromosome segrega 98.3 0.0028 6.1E-08 76.8 37.2 50 479-528 947-996 (1163)
18 KOG0971 Microtubule-associated 98.2 0.0018 4E-08 76.1 31.3 275 297-573 219-557 (1243)
19 PRK04863 mukB cell division pr 98.2 0.0056 1.2E-07 76.3 35.0 61 206-266 274-334 (1486)
20 KOG4674 Uncharacterized conser 98.1 0.023 5E-07 71.5 39.7 235 226-481 655-926 (1822)
21 PHA02562 46 endonuclease subun 98.1 0.0066 1.4E-07 66.7 30.5 105 424-528 298-405 (562)
22 PRK03918 chromosome segregatio 98.1 0.052 1.1E-06 63.1 47.3 8 74-81 134-141 (880)
23 KOG0976 Rho/Rac1-interacting s 98.0 0.0091 2E-07 69.9 30.1 287 260-557 34-339 (1265)
24 KOG0994 Extracellular matrix g 98.0 0.021 4.5E-07 69.1 33.1 299 213-565 1449-1748(1758)
25 KOG4674 Uncharacterized conser 97.9 0.15 3.3E-06 64.6 41.4 297 217-533 691-1035(1822)
26 PF05701 WEMBL: Weak chloropla 97.9 0.055 1.2E-06 61.0 34.8 329 229-572 59-424 (522)
27 PF12718 Tropomyosin_1: Tropom 97.9 0.00063 1.4E-08 64.8 16.3 139 378-566 2-140 (143)
28 KOG1003 Actin filament-coating 97.9 0.0031 6.7E-08 63.6 20.9 183 333-519 3-196 (205)
29 PF10174 Cast: RIM-binding pro 97.9 0.13 2.8E-06 60.9 40.7 87 333-419 335-421 (775)
30 PRK01156 chromosome segregatio 97.7 0.24 5.2E-06 58.4 44.7 26 146-171 195-220 (895)
31 KOG0933 Structural maintenance 97.6 0.31 6.8E-06 58.9 40.8 133 373-522 738-870 (1174)
32 PF07888 CALCOCO1: Calcium bin 97.6 0.12 2.6E-06 59.0 31.0 46 430-475 281-326 (546)
33 PF10174 Cast: RIM-binding pro 97.6 0.31 6.7E-06 57.9 39.9 282 324-621 228-539 (775)
34 KOG0996 Structural maintenance 97.5 0.43 9.4E-06 58.5 37.0 303 244-568 286-604 (1293)
35 PF12128 DUF3584: Protein of u 97.5 0.53 1.1E-05 58.0 40.3 233 210-445 415-705 (1201)
36 KOG0994 Extracellular matrix g 97.5 0.092 2E-06 63.9 28.8 97 218-320 1334-1461(1758)
37 PF07888 CALCOCO1: Calcium bin 97.5 0.34 7.4E-06 55.5 38.4 120 357-483 264-387 (546)
38 PRK11637 AmiB activator; Provi 97.4 0.14 3.1E-06 55.8 26.6 93 305-408 43-135 (428)
39 PRK04863 mukB cell division pr 97.3 1 2.2E-05 57.0 37.6 39 536-574 553-591 (1486)
40 KOG0971 Microtubule-associated 97.3 0.3 6.4E-06 58.6 29.4 300 228-562 234-553 (1243)
41 KOG0933 Structural maintenance 97.2 0.97 2.1E-05 54.9 33.5 233 305-559 254-504 (1174)
42 PRK01156 chromosome segregatio 97.2 0.85 1.8E-05 53.9 35.4 30 153-182 414-443 (895)
43 PF00038 Filament: Intermediat 97.2 0.37 8.1E-06 49.8 27.7 70 499-568 213-289 (312)
44 KOG0996 Structural maintenance 97.1 0.45 9.8E-06 58.3 29.3 170 289-486 385-568 (1293)
45 PRK04778 septation ring format 97.1 0.84 1.8E-05 52.0 37.5 128 333-466 255-385 (569)
46 KOG0995 Centromere-associated 97.0 0.96 2.1E-05 52.1 33.0 306 237-560 215-547 (581)
47 PF05701 WEMBL: Weak chloropla 96.9 1.1 2.3E-05 50.9 38.3 217 208-453 197-414 (522)
48 KOG0250 DNA repair protein RAD 96.9 0.51 1.1E-05 57.5 27.5 32 530-561 432-463 (1074)
49 PF12128 DUF3584: Protein of u 96.9 1.9 4.1E-05 53.4 44.0 198 370-574 491-758 (1201)
50 PHA02562 46 endonuclease subun 96.8 0.55 1.2E-05 51.9 24.8 85 334-418 299-386 (562)
51 PF09726 Macoilin: Transmembra 96.7 0.2 4.4E-06 58.7 21.7 219 216-478 419-654 (697)
52 PF01576 Myosin_tail_1: Myosin 96.5 0.00061 1.3E-08 80.3 0.0 96 336-438 372-467 (859)
53 KOG0250 DNA repair protein RAD 96.5 2.1 4.6E-05 52.4 28.7 24 599-622 520-546 (1074)
54 PF05557 MAD: Mitotic checkpoi 96.5 0.00073 1.6E-08 77.8 0.0 148 370-517 224-428 (722)
55 PF09726 Macoilin: Transmembra 96.4 1.1 2.3E-05 52.9 25.3 60 499-558 591-653 (697)
56 KOG0963 Transcription factor/C 96.4 3 6.6E-05 48.6 35.4 186 208-414 55-273 (629)
57 KOG0612 Rho-associated, coiled 96.3 2.6 5.6E-05 52.4 27.7 59 375-433 538-596 (1317)
58 KOG0977 Nuclear envelope prote 96.2 1.1 2.3E-05 51.7 22.6 302 146-512 47-387 (546)
59 KOG0978 E3 ubiquitin ligase in 96.2 4.2 9.1E-05 48.2 33.4 224 272-521 376-613 (698)
60 PF06160 EzrA: Septation ring 96.1 3.7 8E-05 47.0 36.5 150 333-491 251-403 (560)
61 PF06008 Laminin_I: Laminin Do 95.9 2.5 5.4E-05 43.5 22.8 197 229-448 49-257 (264)
62 PF01576 Myosin_tail_1: Myosin 95.9 0.0022 4.8E-08 75.8 0.0 318 231-559 186-536 (859)
63 KOG0946 ER-Golgi vesicle-tethe 95.8 1.8 3.9E-05 51.8 22.7 106 280-392 645-760 (970)
64 KOG0946 ER-Golgi vesicle-tethe 95.6 0.64 1.4E-05 55.4 18.0 107 368-474 691-800 (970)
65 KOG0018 Structural maintenance 95.2 11 0.00023 46.8 26.8 222 334-582 676-911 (1141)
66 PF12777 MT: Microtubule-bindi 95.2 1.8 3.9E-05 46.4 18.9 106 469-584 216-324 (344)
67 KOG0995 Centromere-associated 95.1 8.8 0.00019 44.7 29.8 87 255-357 195-282 (581)
68 PF00038 Filament: Intermediat 95.0 5.1 0.00011 41.5 31.9 58 499-556 227-284 (312)
69 PRK04778 septation ring format 95.0 8.6 0.00019 44.1 35.1 241 268-526 99-365 (569)
70 KOG0612 Rho-associated, coiled 95.0 14 0.00031 46.3 34.1 40 258-297 492-531 (1317)
71 PF14915 CCDC144C: CCDC144C pr 94.8 7.3 0.00016 42.2 24.1 153 370-574 138-290 (305)
72 PF15070 GOLGA2L5: Putative go 94.8 11 0.00024 44.2 32.4 134 485-619 290-430 (617)
73 PF05483 SCP-1: Synaptonemal c 94.6 13 0.00029 44.2 35.4 85 369-475 349-437 (786)
74 PF10473 CENP-F_leu_zip: Leuci 94.4 2.8 6.1E-05 40.7 16.2 93 326-419 10-102 (140)
75 TIGR03185 DNA_S_dndD DNA sulfu 94.4 13 0.00028 43.1 28.7 40 142-181 210-249 (650)
76 KOG0977 Nuclear envelope prote 94.3 10 0.00023 43.9 23.0 86 334-419 120-219 (546)
77 PF05010 TACC: Transforming ac 94.3 7.3 0.00016 40.0 22.0 193 372-574 5-201 (207)
78 KOG0976 Rho/Rac1-interacting s 94.3 17 0.00037 44.2 32.9 277 230-527 97-383 (1265)
79 COG1579 Zn-ribbon protein, pos 94.2 6.7 0.00014 41.2 19.3 65 335-399 18-82 (239)
80 PRK11281 hypothetical protein; 94.1 2.9 6.3E-05 51.8 19.3 30 492-521 282-311 (1113)
81 COG1579 Zn-ribbon protein, pos 94.1 8.3 0.00018 40.5 20.0 27 532-558 147-173 (239)
82 PF14662 CCDC155: Coiled-coil 94.1 0.78 1.7E-05 46.6 12.2 113 462-574 3-121 (193)
83 PRK09039 hypothetical protein; 93.9 8.3 0.00018 41.8 20.4 21 600-620 234-254 (343)
84 PF10168 Nup88: Nuclear pore c 93.9 0.7 1.5E-05 54.5 13.2 116 458-579 601-716 (717)
85 TIGR03007 pepcterm_ChnLen poly 93.9 4.8 0.0001 44.4 18.9 33 543-575 350-382 (498)
86 TIGR01843 type_I_hlyD type I s 93.8 9.2 0.0002 40.5 20.0 39 546-584 244-282 (423)
87 PF05667 DUF812: Protein of un 93.7 18 0.00038 42.4 23.9 76 499-574 444-531 (594)
88 PF14915 CCDC144C: CCDC144C pr 93.7 13 0.00027 40.5 23.8 151 244-406 75-230 (305)
89 PF05911 DUF869: Plant protein 93.6 8.5 0.00019 46.2 21.3 27 482-515 734-760 (769)
90 PLN02939 transferase, transfer 93.5 14 0.00029 45.7 22.9 157 337-528 166-350 (977)
91 PRK09039 hypothetical protein; 93.4 4.4 9.6E-05 43.9 17.2 49 459-514 136-184 (343)
92 COG0419 SbcC ATPase involved i 93.3 24 0.00052 42.6 48.0 47 600-647 817-865 (908)
93 KOG0978 E3 ubiquitin ligase in 93.0 25 0.00054 42.1 35.4 103 463-579 506-625 (698)
94 COG5185 HEC1 Protein involved 92.9 22 0.00047 41.1 28.2 325 209-559 218-587 (622)
95 PF05557 MAD: Mitotic checkpoi 92.9 0.03 6.5E-07 64.9 0.0 39 371-409 166-204 (722)
96 KOG0963 Transcription factor/C 92.8 25 0.00055 41.4 34.2 402 92-550 11-434 (629)
97 TIGR01005 eps_transp_fam exopo 92.5 19 0.00042 42.1 21.9 71 367-450 192-262 (754)
98 PF05622 HOOK: HOOK protein; 92.4 0.06 1.3E-06 62.5 1.6 118 370-509 240-360 (713)
99 PF04012 PspA_IM30: PspA/IM30 92.3 12 0.00025 37.4 17.2 16 504-519 167-182 (221)
100 PF06008 Laminin_I: Laminin Do 92.2 16 0.00034 37.7 27.6 86 336-421 47-144 (264)
101 TIGR00634 recN DNA repair prot 92.0 21 0.00045 40.8 20.9 9 592-600 423-431 (563)
102 PF15070 GOLGA2L5: Putative go 91.9 31 0.00068 40.6 30.8 142 267-419 167-315 (617)
103 PF14662 CCDC155: Coiled-coil 91.9 17 0.00036 37.4 19.6 113 388-514 16-128 (193)
104 TIGR03007 pepcterm_ChnLen poly 91.8 13 0.00027 41.2 18.5 31 381-411 315-345 (498)
105 PF08317 Spc7: Spc7 kinetochor 91.8 10 0.00022 40.6 17.1 52 252-308 125-176 (325)
106 KOG0018 Structural maintenance 91.5 24 0.00053 43.8 21.4 226 257-513 238-476 (1141)
107 KOG4593 Mitotic checkpoint pro 91.3 39 0.00084 40.5 36.3 144 277-420 115-274 (716)
108 PF14073 Cep57_CLD: Centrosome 91.3 11 0.00023 38.2 15.6 145 336-522 6-154 (178)
109 TIGR03185 DNA_S_dndD DNA sulfu 91.2 35 0.00075 39.8 29.4 34 268-301 160-195 (650)
110 PF05622 HOOK: HOOK protein; 91.0 0.13 2.7E-06 59.9 2.2 45 400-444 484-528 (713)
111 KOG0239 Kinesin (KAR3 subfamil 90.9 35 0.00075 40.6 21.7 141 479-629 225-396 (670)
112 PRK10929 putative mechanosensi 90.6 57 0.0012 41.1 28.8 65 459-523 214-293 (1109)
113 KOG0980 Actin-binding protein 90.1 56 0.0012 40.2 27.6 64 340-403 388-451 (980)
114 TIGR01005 eps_transp_fam exopo 90.1 45 0.00099 39.2 22.8 27 499-525 380-406 (754)
115 PF10473 CENP-F_leu_zip: Leuci 90.0 20 0.00043 34.9 16.3 94 411-518 10-103 (140)
116 TIGR02680 conserved hypothetic 89.6 71 0.0015 40.8 29.8 123 308-438 222-346 (1353)
117 TIGR02977 phageshock_pspA phag 89.4 26 0.00057 35.5 19.0 49 340-388 30-78 (219)
118 PF00769 ERM: Ezrin/radixin/mo 89.0 9.7 0.00021 39.6 13.7 123 347-490 4-126 (246)
119 PF13851 GAS: Growth-arrest sp 88.5 23 0.00051 35.8 15.7 113 459-572 18-131 (201)
120 KOG0982 Centrosomal protein Nu 88.1 54 0.0012 37.6 19.3 208 368-626 249-477 (502)
121 PF15397 DUF4618: Domain of un 88.0 37 0.0008 36.2 17.3 143 392-572 8-155 (258)
122 PLN03188 kinesin-12 family pro 88.0 90 0.002 39.9 25.6 114 458-573 1126-1250(1320)
123 PLN02939 transferase, transfer 87.9 59 0.0013 40.5 21.0 51 468-528 352-402 (977)
124 PRK10869 recombination and rep 87.8 59 0.0013 37.5 25.0 91 423-553 294-386 (553)
125 KOG0249 LAR-interacting protei 87.7 29 0.00064 41.8 17.7 123 378-512 65-187 (916)
126 PRK10698 phage shock protein P 87.5 37 0.0008 34.9 20.3 13 474-486 173-185 (222)
127 KOG0979 Structural maintenance 87.5 87 0.0019 39.2 22.6 197 293-491 115-342 (1072)
128 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.3 26 0.00057 32.9 17.5 74 500-573 57-130 (132)
129 PF11559 ADIP: Afadin- and alp 87.2 16 0.00036 34.5 13.1 25 538-562 123-147 (151)
130 COG0419 SbcC ATPase involved i 86.9 82 0.0018 38.2 47.7 73 52-124 118-195 (908)
131 PF15619 Lebercilin: Ciliary p 86.8 38 0.00083 34.4 19.6 23 469-491 120-142 (194)
132 KOG4673 Transcription factor T 86.4 86 0.0019 38.0 34.2 103 368-485 522-630 (961)
133 TIGR01843 type_I_hlyD type I s 85.6 53 0.0011 34.8 17.5 18 618-636 386-403 (423)
134 PF09787 Golgin_A5: Golgin sub 85.6 73 0.0016 36.4 29.9 65 499-572 366-430 (511)
135 smart00787 Spc7 Spc7 kinetocho 85.3 19 0.00042 38.8 13.9 46 253-303 121-166 (312)
136 TIGR00634 recN DNA repair prot 85.1 78 0.0017 36.3 21.8 17 422-438 298-314 (563)
137 PF05667 DUF812: Protein of un 84.4 93 0.002 36.7 21.3 38 520-557 488-528 (594)
138 TIGR01000 bacteriocin_acc bact 84.2 75 0.0016 35.4 21.4 82 504-585 238-328 (457)
139 PF06160 EzrA: Septation ring 84.1 89 0.0019 36.2 35.9 188 247-441 76-268 (560)
140 COG3883 Uncharacterized protei 83.8 56 0.0012 35.0 16.2 49 336-384 47-95 (265)
141 KOG0249 LAR-interacting protei 83.3 52 0.0011 39.8 16.9 82 332-418 103-184 (916)
142 PF05911 DUF869: Plant protein 83.2 1.2E+02 0.0026 37.0 25.5 122 368-510 595-716 (769)
143 PRK10884 SH3 domain-containing 82.9 5.2 0.00011 40.8 8.0 81 499-586 97-177 (206)
144 KOG1029 Endocytic adaptor prot 82.8 1.3E+02 0.0028 37.1 27.5 92 334-432 444-535 (1118)
145 PRK10884 SH3 domain-containing 82.8 13 0.00029 38.0 10.9 24 338-361 90-113 (206)
146 PF05335 DUF745: Protein of un 82.7 59 0.0013 33.1 15.6 113 318-448 62-174 (188)
147 TIGR03017 EpsF chain length de 82.5 80 0.0017 34.4 19.3 47 505-552 321-367 (444)
148 PF10481 CENP-F_N: Cenp-F N-te 81.8 49 0.0011 35.9 14.8 99 349-489 40-138 (307)
149 COG4942 Membrane-bound metallo 81.7 1E+02 0.0022 35.1 24.7 70 316-385 38-110 (420)
150 PF04156 IncA: IncA protein; 81.6 46 0.001 32.3 13.7 10 373-382 141-150 (191)
151 PF07926 TPR_MLP1_2: TPR/MLP1/ 81.5 48 0.001 31.2 14.6 9 474-482 105-113 (132)
152 TIGR01010 BexC_CtrB_KpsE polys 81.4 45 0.00098 35.7 14.7 138 251-403 168-305 (362)
153 PF08614 ATG16: Autophagy prot 79.9 13 0.00028 36.9 9.4 108 287-412 73-180 (194)
154 COG1340 Uncharacterized archae 79.8 98 0.0021 33.8 30.3 247 339-626 32-281 (294)
155 smart00787 Spc7 Spc7 kinetocho 79.6 49 0.0011 35.9 14.3 58 357-414 206-263 (312)
156 PF15619 Lebercilin: Ciliary p 79.3 77 0.0017 32.2 19.8 130 226-363 13-147 (194)
157 COG4942 Membrane-bound metallo 79.1 1.2E+02 0.0027 34.5 24.5 11 426-436 162-172 (420)
158 PF04156 IncA: IncA protein; 78.6 31 0.00068 33.5 11.5 37 378-414 111-147 (191)
159 PF11559 ADIP: Afadin- and alp 78.2 43 0.00094 31.7 12.0 68 333-400 65-132 (151)
160 PF00769 ERM: Ezrin/radixin/mo 78.2 74 0.0016 33.2 14.6 110 375-491 4-113 (246)
161 PF05266 DUF724: Protein of un 78.1 46 0.001 33.7 12.8 110 286-396 77-186 (190)
162 KOG1029 Endocytic adaptor prot 77.8 1.9E+02 0.004 35.8 26.6 29 454-482 529-557 (1118)
163 TIGR02680 conserved hypothetic 77.7 2.2E+02 0.0048 36.6 30.3 30 99-128 424-453 (1353)
164 PRK10476 multidrug resistance 77.6 85 0.0018 33.3 15.2 35 407-442 135-169 (346)
165 COG3096 MukB Uncharacterized p 77.3 1.9E+02 0.0042 35.7 26.4 147 332-482 834-999 (1480)
166 KOG0964 Structural maintenance 77.1 2.1E+02 0.0046 36.1 32.4 256 279-560 228-493 (1200)
167 COG3883 Uncharacterized protei 76.5 1.2E+02 0.0025 32.8 19.0 62 499-572 166-227 (265)
168 KOG1899 LAR transmembrane tyro 76.2 1.8E+02 0.0039 35.1 18.1 63 334-396 104-166 (861)
169 PF13747 DUF4164: Domain of un 75.8 29 0.00063 31.2 9.5 67 338-415 12-78 (89)
170 PF13851 GAS: Growth-arrest sp 74.7 1E+02 0.0022 31.3 18.7 53 306-358 27-79 (201)
171 PF12325 TMF_TATA_bd: TATA ele 74.6 65 0.0014 30.7 11.9 98 458-570 21-118 (120)
172 KOG0804 Cytoplasmic Zn-finger 74.1 24 0.00052 40.4 10.4 75 499-573 365-446 (493)
173 PF08317 Spc7: Spc7 kinetochor 73.5 1.4E+02 0.003 32.2 21.9 30 150-179 70-99 (325)
174 PRK09841 cryptic autophosphory 73.3 1.5E+02 0.0032 35.3 17.1 138 239-402 253-396 (726)
175 PF10146 zf-C4H2: Zinc finger- 73.2 53 0.0011 34.3 12.0 63 515-577 38-103 (230)
176 PF04912 Dynamitin: Dynamitin 72.9 95 0.0021 34.1 14.5 20 115-134 33-52 (388)
177 PF05483 SCP-1: Synaptonemal c 71.4 2.5E+02 0.0053 34.3 37.0 350 208-574 113-525 (786)
178 TIGR00998 8a0101 efflux pump m 71.1 1.4E+02 0.003 31.2 15.5 62 377-442 102-163 (334)
179 PF12777 MT: Microtubule-bindi 70.9 72 0.0016 34.5 12.9 129 482-652 2-130 (344)
180 PRK11281 hypothetical protein; 70.9 3E+02 0.0065 35.1 36.9 58 244-301 126-183 (1113)
181 KOG1655 Protein involved in va 70.6 86 0.0019 32.7 12.5 106 473-593 18-163 (218)
182 KOG1853 LIS1-interacting prote 70.2 76 0.0016 34.4 12.4 39 374-412 89-127 (333)
183 PF08614 ATG16: Autophagy prot 69.8 42 0.0009 33.4 10.1 108 462-569 69-179 (194)
184 PF15294 Leu_zip: Leucine zipp 69.7 71 0.0015 34.5 12.3 75 370-444 126-209 (278)
185 PF07889 DUF1664: Protein of u 69.6 66 0.0014 31.0 10.9 84 337-437 39-122 (126)
186 PRK10929 putative mechanosensi 69.2 3.3E+02 0.0071 34.8 31.2 30 424-453 278-307 (1109)
187 PF05278 PEARLI-4: Arabidopsis 68.9 1.8E+02 0.0038 31.6 15.0 53 334-386 207-259 (269)
188 PF05266 DUF724: Protein of un 68.8 1E+02 0.0023 31.2 12.7 81 334-414 96-176 (190)
189 PF06120 Phage_HK97_TLTM: Tail 68.6 62 0.0014 35.2 11.7 81 333-413 87-171 (301)
190 PF13870 DUF4201: Domain of un 68.5 1.2E+02 0.0026 29.6 17.0 109 307-418 18-140 (177)
191 PRK11519 tyrosine kinase; Prov 68.3 1.1E+02 0.0025 36.2 14.8 61 332-403 337-397 (719)
192 TIGR01000 bacteriocin_acc bact 67.8 2.1E+02 0.0045 32.0 20.4 21 462-482 238-258 (457)
193 PF12325 TMF_TATA_bd: TATA ele 67.6 1.2E+02 0.0025 29.0 13.1 67 368-445 22-88 (120)
194 COG1842 PspA Phage shock prote 67.5 1.6E+02 0.0035 30.7 18.2 19 427-445 122-140 (225)
195 PF06810 Phage_GP20: Phage min 66.2 81 0.0018 30.9 11.0 65 335-399 14-81 (155)
196 PF10168 Nup88: Nuclear pore c 66.2 1.7E+02 0.0037 35.3 15.6 116 207-326 538-656 (717)
197 PF08826 DMPK_coil: DMPK coile 66.0 30 0.00066 29.5 7.0 46 345-390 15-60 (61)
198 PF08647 BRE1: BRE1 E3 ubiquit 65.6 33 0.00071 30.9 7.7 58 229-286 7-64 (96)
199 KOG0804 Cytoplasmic Zn-finger 65.5 1.1E+02 0.0023 35.4 13.1 30 493-522 401-430 (493)
200 PF03962 Mnd1: Mnd1 family; I 65.2 69 0.0015 32.3 10.6 89 332-438 60-148 (188)
201 KOG1853 LIS1-interacting prote 64.8 2.2E+02 0.0047 31.1 18.0 76 392-480 29-104 (333)
202 PF09728 Taxilin: Myosin-like 64.4 2.1E+02 0.0047 30.9 28.9 80 489-568 203-299 (309)
203 TIGR02132 phaR_Bmeg polyhydrox 63.1 63 0.0014 33.2 9.8 91 322-412 60-150 (189)
204 PRK03598 putative efflux pump 62.9 1.3E+02 0.0027 31.8 12.5 36 548-583 178-213 (331)
205 TIGR02338 gimC_beta prefoldin, 62.9 98 0.0021 28.3 10.3 38 529-566 69-106 (110)
206 PF01920 Prefoldin_2: Prefoldi 62.9 1E+02 0.0023 26.8 10.3 67 499-565 9-100 (106)
207 KOG0962 DNA repair protein RAD 62.8 4.6E+02 0.0099 34.1 30.7 128 143-295 821-955 (1294)
208 smart00338 BRLZ basic region l 62.3 43 0.00094 27.7 7.2 49 516-564 15-63 (65)
209 PF15456 Uds1: Up-regulated Du 62.3 1.1E+02 0.0025 29.2 10.9 75 332-406 20-118 (124)
210 PF10212 TTKRSYEDQ: Predicted 62.2 3.2E+02 0.0069 32.2 18.8 32 334-365 309-340 (518)
211 TIGR02977 phageshock_pspA phag 62.1 1.9E+02 0.0041 29.5 14.6 44 529-572 101-144 (219)
212 KOG0993 Rab5 GTPase effector R 61.3 1.1E+02 0.0024 35.1 12.2 73 395-482 105-177 (542)
213 cd00632 Prefoldin_beta Prefold 60.6 1.2E+02 0.0025 27.4 10.3 38 529-566 65-102 (105)
214 COG1566 EmrA Multidrug resista 59.3 1.7E+02 0.0036 32.5 13.1 100 341-443 98-208 (352)
215 KOG4643 Uncharacterized coiled 59.2 4.8E+02 0.01 33.3 33.3 42 534-575 488-529 (1195)
216 KOG4438 Centromere-associated 58.8 3.4E+02 0.0073 31.4 29.1 165 402-570 221-429 (446)
217 COG2433 Uncharacterized conser 58.7 1.3E+02 0.0027 36.0 12.5 71 333-403 435-508 (652)
218 KOG0962 DNA repair protein RAD 58.1 5.4E+02 0.012 33.5 37.4 15 67-81 106-120 (1294)
219 KOG4673 Transcription factor T 58.0 4.4E+02 0.0095 32.4 24.4 41 459-499 522-562 (961)
220 PF04102 SlyX: SlyX; InterPro 57.7 40 0.00088 28.7 6.4 46 529-574 6-51 (69)
221 PF14257 DUF4349: Domain of un 57.3 1.6E+02 0.0035 30.3 11.9 67 499-574 129-195 (262)
222 PF07106 TBPIP: Tat binding pr 57.0 70 0.0015 31.0 8.8 61 333-393 71-133 (169)
223 PF09728 Taxilin: Myosin-like 56.7 2.9E+02 0.0063 30.0 30.5 62 461-523 245-306 (309)
224 PRK10869 recombination and rep 56.7 3.7E+02 0.0081 31.2 21.4 93 306-398 265-363 (553)
225 PF04012 PspA_IM30: PspA/IM30 56.0 2.2E+02 0.0049 28.4 21.2 52 345-396 27-78 (221)
226 PF05010 TACC: Transforming ac 55.2 2.6E+02 0.0057 29.0 23.9 40 348-387 16-55 (207)
227 KOG4360 Uncharacterized coiled 54.7 4.3E+02 0.0094 31.3 16.5 134 333-476 89-249 (596)
228 PRK00295 hypothetical protein; 54.3 55 0.0012 28.1 6.7 46 529-574 7-52 (68)
229 PF05546 She9_MDM33: She9 / Md 54.2 2.8E+02 0.0061 29.0 14.5 52 368-419 31-82 (207)
230 KOG0980 Actin-binding protein 54.0 5.5E+02 0.012 32.3 25.4 49 464-519 470-518 (980)
231 TIGR02338 gimC_beta prefoldin, 54.0 1.3E+02 0.0029 27.4 9.6 76 427-521 26-107 (110)
232 PRK04325 hypothetical protein; 53.7 86 0.0019 27.4 7.9 46 529-574 11-56 (74)
233 PF05546 She9_MDM33: She9 / Md 53.0 2.9E+02 0.0064 28.9 12.8 49 322-372 22-70 (207)
234 PRK00736 hypothetical protein; 52.1 72 0.0016 27.4 7.1 46 529-574 7-52 (68)
235 PF12329 TMF_DNA_bd: TATA elem 52.0 94 0.002 27.1 7.9 62 333-394 11-72 (74)
236 KOG4593 Mitotic checkpoint pro 51.7 5.3E+02 0.012 31.5 31.7 122 262-400 88-210 (716)
237 PF09789 DUF2353: Uncharacteri 51.6 3.8E+02 0.0082 29.7 19.7 45 370-414 73-117 (319)
238 PRK02119 hypothetical protein; 51.4 91 0.002 27.2 7.7 47 528-574 10-56 (73)
239 PF06818 Fez1: Fez1; InterPro 51.2 3.1E+02 0.0067 28.6 12.9 104 460-570 59-171 (202)
240 PRK02793 phi X174 lysis protei 51.2 1.1E+02 0.0023 26.6 8.1 47 528-574 9-55 (72)
241 PRK00846 hypothetical protein; 50.7 73 0.0016 28.5 7.1 48 527-574 13-60 (77)
242 PF04111 APG6: Autophagy prote 50.7 1.7E+02 0.0036 31.7 11.2 70 338-407 61-137 (314)
243 PF04111 APG6: Autophagy prote 50.6 1.9E+02 0.0042 31.3 11.6 50 333-382 42-91 (314)
244 TIGR01010 BexC_CtrB_KpsE polys 50.5 3.2E+02 0.007 29.4 13.3 82 306-387 174-260 (362)
245 PF00170 bZIP_1: bZIP transcri 50.4 1.1E+02 0.0023 25.3 7.7 48 517-564 16-63 (64)
246 TIGR00293 prefoldin, archaeal 50.4 63 0.0014 29.6 7.0 44 530-573 82-125 (126)
247 PF00435 Spectrin: Spectrin re 50.3 1.4E+02 0.0031 24.5 11.6 80 337-418 4-87 (105)
248 PRK11085 magnesium/nickel/coba 50.2 41 0.00088 36.4 6.6 76 96-182 128-203 (316)
249 KOG4809 Rab6 GTPase-interactin 50.2 5.2E+02 0.011 31.0 26.2 48 388-438 429-476 (654)
250 PF04728 LPP: Lipoprotein leuc 50.0 82 0.0018 26.8 6.9 34 363-396 18-51 (56)
251 PRK09343 prefoldin subunit bet 49.9 2.3E+02 0.0049 26.7 10.7 38 529-566 73-110 (121)
252 PF06005 DUF904: Protein of un 49.6 65 0.0014 28.2 6.5 47 529-575 6-52 (72)
253 PF02994 Transposase_22: L1 tr 49.4 23 0.00051 38.8 4.7 50 372-421 140-189 (370)
254 COG1382 GimC Prefoldin, chaper 49.3 88 0.0019 30.1 7.8 72 428-511 30-107 (119)
255 PRK09343 prefoldin subunit bet 48.9 2.3E+02 0.0049 26.7 10.5 77 427-522 30-112 (121)
256 PF04582 Reo_sigmaC: Reovirus 48.8 31 0.00068 37.9 5.5 105 264-386 32-136 (326)
257 PF11471 Sugarporin_N: Maltopo 48.8 26 0.00056 29.7 3.8 29 373-401 29-57 (60)
258 PF02994 Transposase_22: L1 tr 48.6 45 0.00098 36.7 6.7 99 531-638 141-243 (370)
259 PF15294 Leu_zip: Leucine zipp 48.6 3.9E+02 0.0086 29.1 20.3 95 465-559 130-240 (278)
260 PTZ00464 SNF-7-like protein; P 48.4 1.3E+02 0.0028 31.1 9.5 74 477-560 21-94 (211)
261 PF15254 CCDC14: Coiled-coil d 48.2 6.4E+02 0.014 31.4 17.3 127 276-417 339-475 (861)
262 KOG0982 Centrosomal protein Nu 48.1 5.1E+02 0.011 30.2 18.8 28 333-360 249-276 (502)
263 PF09403 FadA: Adhesion protei 47.1 2.5E+02 0.0055 27.1 10.6 69 506-574 24-101 (126)
264 PF12795 MscS_porin: Mechanose 47.1 3.3E+02 0.0073 27.8 21.0 147 242-407 81-228 (240)
265 PF12072 DUF3552: Domain of un 45.5 3.4E+02 0.0073 27.4 12.0 52 334-385 78-129 (201)
266 KOG0239 Kinesin (KAR3 subfamil 44.8 6.4E+02 0.014 30.5 16.1 27 341-367 175-201 (670)
267 PRK11519 tyrosine kinase; Prov 44.2 3.8E+02 0.0081 32.0 13.7 37 267-303 260-296 (719)
268 PF13514 AAA_27: AAA domain 44.2 7.5E+02 0.016 31.1 38.8 173 144-317 455-647 (1111)
269 PF10146 zf-C4H2: Zinc finger- 43.8 4.1E+02 0.0089 27.9 13.5 45 368-412 59-103 (230)
270 TIGR03017 EpsF chain length de 43.8 4.7E+02 0.01 28.6 27.2 28 547-574 341-368 (444)
271 PRK10246 exonuclease subunit S 43.5 7.7E+02 0.017 31.0 32.6 50 597-647 946-999 (1047)
272 PF09744 Jnk-SapK_ap_N: JNK_SA 43.5 2.1E+02 0.0046 28.5 9.8 102 306-411 26-131 (158)
273 PF13514 AAA_27: AAA domain 43.4 7.7E+02 0.017 31.0 42.1 63 104-180 527-589 (1111)
274 PRK04406 hypothetical protein; 42.8 1.6E+02 0.0034 26.0 7.8 47 528-574 12-58 (75)
275 PRK10476 multidrug resistance 42.5 4.5E+02 0.0097 28.0 14.2 29 556-584 191-219 (346)
276 PRK09841 cryptic autophosphory 42.1 6.1E+02 0.013 30.4 15.0 37 370-406 261-297 (726)
277 PRK12704 phosphodiesterase; Pr 42.0 2.9E+02 0.0063 32.1 12.0 24 622-645 380-403 (520)
278 PF14197 Cep57_CLD_2: Centroso 41.4 2.3E+02 0.0049 24.7 8.5 27 333-359 4-30 (69)
279 COG1842 PspA Phage shock prote 41.4 4.4E+02 0.0095 27.6 15.8 63 332-394 83-145 (225)
280 PF12329 TMF_DNA_bd: TATA elem 41.0 2E+02 0.0044 25.1 8.2 50 308-357 4-56 (74)
281 PF08826 DMPK_coil: DMPK coile 40.7 1.9E+02 0.004 24.9 7.7 39 379-417 14-52 (61)
282 COG1566 EmrA Multidrug resista 40.7 5E+02 0.011 29.0 13.1 76 353-438 89-164 (352)
283 PF04849 HAP1_N: HAP1 N-termin 40.6 5.4E+02 0.012 28.4 18.6 34 495-528 227-260 (306)
284 PRK15396 murein lipoprotein; P 40.4 1E+02 0.0023 27.5 6.4 46 352-397 29-74 (78)
285 PF05278 PEARLI-4: Arabidopsis 39.7 4.5E+02 0.0098 28.6 12.1 53 368-420 213-265 (269)
286 PF07544 Med9: RNA polymerase 39.5 68 0.0015 28.3 5.2 41 95-135 6-49 (83)
287 PF10267 Tmemb_cc2: Predicted 39.2 4.8E+02 0.01 29.6 12.8 12 426-437 259-270 (395)
288 TIGR02231 conserved hypothetic 38.8 2.9E+02 0.0062 31.5 11.3 86 333-418 70-173 (525)
289 PF09755 DUF2046: Uncharacteri 37.5 6.1E+02 0.013 28.1 24.6 187 308-579 22-209 (310)
290 PF04108 APG17: Autophagy prot 37.4 6.4E+02 0.014 28.3 28.1 89 268-358 116-216 (412)
291 PF10186 Atg14: UV radiation r 37.2 4.6E+02 0.01 26.6 15.9 46 369-414 63-108 (302)
292 PF05377 FlaC_arch: Flagella a 37.1 79 0.0017 26.8 4.9 39 377-415 1-39 (55)
293 TIGR00998 8a0101 efflux pump m 37.0 5.1E+02 0.011 27.0 12.2 25 559-583 190-214 (334)
294 PF10234 Cluap1: Clusterin-ass 36.6 5.8E+02 0.013 27.6 13.3 116 223-356 124-240 (267)
295 PRK10698 phage shock protein P 36.5 5E+02 0.011 26.8 15.5 57 518-574 87-146 (222)
296 PF09738 DUF2051: Double stran 36.3 5.1E+02 0.011 28.4 12.1 36 588-623 181-216 (302)
297 PF05529 Bap31: B-cell recepto 35.7 2.6E+02 0.0057 27.6 9.2 63 339-401 123-186 (192)
298 PF04100 Vps53_N: Vps53-like, 35.0 6.8E+02 0.015 27.9 17.5 70 333-402 24-97 (383)
299 PF10779 XhlA: Haemolysin XhlA 35.0 1.9E+02 0.0041 24.7 7.0 46 338-383 3-48 (71)
300 PF07106 TBPIP: Tat binding pr 34.7 1.8E+02 0.0039 28.2 7.7 23 336-358 81-103 (169)
301 PRK00409 recombination and DNA 34.4 3.8E+02 0.0083 32.6 11.9 70 370-445 514-583 (782)
302 KOG4324 Guanine nucleotide exc 34.2 2.2E+02 0.0049 32.8 9.3 162 384-561 59-235 (476)
303 COG1382 GimC Prefoldin, chaper 34.1 4.4E+02 0.0095 25.5 10.5 38 529-573 72-109 (119)
304 KOG1937 Uncharacterized conser 34.1 8.4E+02 0.018 28.7 19.3 46 529-574 384-429 (521)
305 TIGR03319 YmdA_YtgF conserved 34.1 4.8E+02 0.01 30.3 12.1 24 622-645 374-397 (514)
306 COG2433 Uncharacterized conser 33.8 3.3E+02 0.0072 32.7 10.8 25 624-648 598-622 (652)
307 PF06548 Kinesin-related: Kine 33.7 8.4E+02 0.018 28.6 29.3 110 463-574 361-481 (488)
308 PF10234 Cluap1: Clusterin-ass 33.5 1.6E+02 0.0034 31.7 7.7 48 350-397 171-218 (267)
309 PF10186 Atg14: UV radiation r 32.5 5.5E+02 0.012 26.1 23.3 100 468-574 57-156 (302)
310 KOG3595 Dyneins, heavy chain [ 32.0 1.3E+03 0.028 30.2 26.9 106 459-571 919-1027(1395)
311 PF02050 FliJ: Flagellar FliJ 31.9 3.3E+02 0.0071 23.3 9.3 69 334-402 12-85 (123)
312 PF09177 Syntaxin-6_N: Syntaxi 31.7 3.5E+02 0.0076 24.1 8.5 62 405-477 33-94 (97)
313 PF13747 DUF4164: Domain of un 31.7 3.9E+02 0.0085 24.1 10.1 75 499-574 5-79 (89)
314 PF01920 Prefoldin_2: Prefoldi 31.6 3.4E+02 0.0074 23.6 8.3 19 338-356 66-84 (106)
315 PF06785 UPF0242: Uncharacteri 31.5 7.8E+02 0.017 28.0 12.5 45 370-414 128-172 (401)
316 PF06428 Sec2p: GDP/GTP exchan 31.2 1.2E+02 0.0026 28.2 5.6 72 365-443 11-83 (100)
317 PF07439 DUF1515: Protein of u 31.1 2.1E+02 0.0045 27.4 7.2 50 336-385 10-63 (112)
318 PF08537 NBP1: Fungal Nap bind 30.9 2.7E+02 0.0058 31.0 9.0 46 333-378 174-219 (323)
319 PRK09973 putative outer membra 30.9 1.7E+02 0.0036 26.8 6.3 27 368-394 44-70 (85)
320 PRK00409 recombination and DNA 30.9 1.1E+03 0.023 29.0 15.7 31 461-491 514-544 (782)
321 TIGR01069 mutS2 MutS2 family p 30.4 4.3E+02 0.0094 32.2 11.4 48 372-419 511-558 (771)
322 PF03310 Cauli_DNA-bind: Cauli 30.2 77 0.0017 30.6 4.3 81 107-189 6-101 (121)
323 KOG3850 Predicted membrane pro 30.1 7.3E+02 0.016 28.6 12.2 29 231-259 90-118 (455)
324 PF04849 HAP1_N: HAP1 N-termin 29.8 8E+02 0.017 27.2 22.4 21 336-356 162-182 (306)
325 PF09730 BicD: Microtubule-ass 29.6 1.1E+03 0.025 28.9 37.0 18 499-516 370-387 (717)
326 KOG3647 Predicted coiled-coil 29.5 3.1E+02 0.0066 30.2 8.9 59 275-333 106-164 (338)
327 COG0497 RecN ATPase involved i 29.3 1E+03 0.023 28.3 25.5 39 260-298 157-195 (557)
328 PF13166 AAA_13: AAA domain 29.2 9.7E+02 0.021 28.0 18.4 24 25-50 17-40 (712)
329 PRK10361 DNA recombination pro 29.2 9.8E+02 0.021 28.0 17.5 26 394-419 96-121 (475)
330 PRK13729 conjugal transfer pil 28.7 1.8E+02 0.0039 33.8 7.6 48 338-385 73-120 (475)
331 KOG4603 TBP-1 interacting prot 28.4 4.8E+02 0.01 27.1 9.6 121 272-394 5-141 (201)
332 PF11932 DUF3450: Protein of u 28.4 6.8E+02 0.015 25.8 14.0 11 427-437 86-96 (251)
333 PF06810 Phage_GP20: Phage min 28.3 2.3E+02 0.005 27.9 7.3 46 306-352 24-69 (155)
334 PRK11020 hypothetical protein; 28.3 1.9E+02 0.0041 27.9 6.4 51 500-563 3-53 (118)
335 PF07111 HCR: Alpha helical co 28.1 1.2E+03 0.026 28.7 32.6 216 333-572 161-404 (739)
336 PF10498 IFT57: Intra-flagella 28.0 5.9E+02 0.013 28.4 11.1 44 373-416 263-306 (359)
337 PF05384 DegS: Sensor protein 27.9 6.3E+02 0.014 25.3 13.1 84 464-561 31-118 (159)
338 COG4372 Uncharacterized protei 27.9 1E+03 0.022 27.7 25.6 145 276-420 46-195 (499)
339 PF00846 Hanta_nucleocap: Hant 27.7 2.7E+02 0.0058 31.9 8.4 54 334-387 2-67 (428)
340 PRK03598 putative efflux pump 27.7 7.5E+02 0.016 26.1 15.1 25 306-330 78-102 (331)
341 KOG4403 Cell surface glycoprot 27.1 7E+02 0.015 29.2 11.5 31 430-460 352-382 (575)
342 PF13094 CENP-Q: CENP-Q, a CEN 27.0 2.1E+02 0.0047 27.5 6.8 50 370-419 35-84 (160)
343 PRK15178 Vi polysaccharide exp 27.0 1E+03 0.022 27.5 13.3 84 309-392 249-337 (434)
344 PRK11578 macrolide transporter 26.9 2.4E+02 0.0052 30.3 7.8 24 428-451 102-125 (370)
345 PF05739 SNARE: SNARE domain; 26.0 3.4E+02 0.0074 21.7 8.8 56 350-405 6-61 (63)
346 KOG0964 Structural maintenance 26.0 1.5E+03 0.033 29.2 32.2 206 228-437 667-904 (1200)
347 PF05837 CENP-H: Centromere pr 26.0 5.3E+02 0.011 23.8 9.8 78 496-573 4-83 (106)
348 PF01496 V_ATPase_I: V-type AT 25.9 7.5E+02 0.016 29.7 12.3 25 499-523 226-250 (759)
349 PF07544 Med9: RNA polymerase 25.8 4.7E+02 0.01 23.1 8.3 77 133-234 2-78 (83)
350 PF07851 TMPIT: TMPIT-like pro 25.7 4.5E+02 0.0098 29.2 9.6 59 333-391 3-61 (330)
351 PF06818 Fez1: Fez1; InterPro 25.5 7.6E+02 0.016 25.9 10.7 76 307-386 15-90 (202)
352 PF11802 CENP-K: Centromere-as 25.5 8.3E+02 0.018 26.6 11.3 89 467-571 30-119 (268)
353 PRK12704 phosphodiesterase; Pr 25.5 1.1E+03 0.024 27.5 16.4 15 519-533 180-194 (520)
354 PF00170 bZIP_1: bZIP transcri 25.4 1.1E+02 0.0024 25.2 4.0 29 490-518 35-63 (64)
355 PF08647 BRE1: BRE1 E3 ubiquit 25.2 5.1E+02 0.011 23.4 9.5 43 378-420 26-68 (96)
356 PF15397 DUF4618: Domain of un 25.2 8.9E+02 0.019 26.2 19.8 113 276-388 47-168 (258)
357 PF09177 Syntaxin-6_N: Syntaxi 25.2 4.9E+02 0.011 23.2 8.6 51 496-546 40-93 (97)
358 PF10498 IFT57: Intra-flagella 25.0 8.6E+02 0.019 27.2 11.7 20 62-83 47-66 (359)
359 PF05529 Bap31: B-cell recepto 25.0 4.4E+02 0.0095 26.0 8.7 10 461-470 116-125 (192)
360 KOG1962 B-cell receptor-associ 24.8 6.5E+02 0.014 26.6 10.1 27 546-572 184-210 (216)
361 PRK03947 prefoldin subunit alp 24.6 5.9E+02 0.013 23.9 10.5 44 531-574 91-134 (140)
362 PF09730 BicD: Microtubule-ass 24.5 1.4E+03 0.03 28.2 35.4 53 334-386 265-317 (717)
363 PF11471 Sugarporin_N: Maltopo 24.3 93 0.002 26.4 3.3 30 367-396 30-59 (60)
364 PF11570 E2R135: Coiled-coil r 24.1 6.3E+02 0.014 25.1 9.2 93 307-399 27-135 (136)
365 PF10458 Val_tRNA-synt_C: Valy 23.9 4.4E+02 0.0095 22.1 7.3 27 333-359 3-29 (66)
366 KOG0979 Structural maintenance 23.4 1.7E+03 0.036 28.7 28.9 142 400-563 755-899 (1072)
367 PF07111 HCR: Alpha helical co 23.3 1.5E+03 0.032 28.1 41.9 343 100-528 260-626 (739)
368 PRK10246 exonuclease subunit S 23.2 1.6E+03 0.034 28.4 33.7 15 466-480 783-797 (1047)
369 TIGR01730 RND_mfp RND family e 23.0 4.3E+02 0.0093 26.9 8.4 86 496-582 58-143 (322)
370 PRK00295 hypothetical protein; 22.8 4.1E+02 0.0088 22.9 7.0 29 540-568 25-53 (68)
371 PF08561 Ribosomal_L37: Mitoch 22.8 38 0.00083 30.2 0.8 28 617-644 6-41 (85)
372 PRK10636 putative ABC transpor 22.7 3.3E+02 0.0071 32.0 8.4 65 339-403 561-632 (638)
373 PF12795 MscS_porin: Mechanose 22.6 8.4E+02 0.018 25.0 19.4 58 499-560 154-211 (240)
374 PF13863 DUF4200: Domain of un 22.1 6E+02 0.013 23.1 12.5 62 370-438 47-108 (126)
375 PF07058 Myosin_HC-like: Myosi 22.0 1.2E+03 0.025 26.4 13.1 77 335-418 60-157 (351)
376 KOG4643 Uncharacterized coiled 21.9 1.8E+03 0.04 28.6 36.5 34 529-562 525-558 (1195)
377 PF07439 DUF1515: Protein of u 21.6 4.1E+02 0.0089 25.6 7.2 31 368-398 7-37 (112)
378 PRK15136 multidrug efflux syst 21.4 1.1E+03 0.024 25.9 13.7 40 405-445 139-178 (390)
379 KOG0998 Synaptic vesicle prote 21.3 2.1E+02 0.0045 35.3 6.7 158 332-524 426-583 (847)
380 KOG4809 Rab6 GTPase-interactin 21.3 1.5E+03 0.033 27.4 22.8 29 425-453 394-422 (654)
381 PF11932 DUF3450: Protein of u 21.3 9.2E+02 0.02 24.9 15.6 69 446-528 35-103 (251)
382 PF06009 Laminin_II: Laminin D 21.2 32 0.00069 32.7 0.0 79 367-449 29-107 (138)
383 PRK15422 septal ring assembly 21.2 4.7E+02 0.01 23.9 7.2 59 459-517 17-75 (79)
384 PF13870 DUF4201: Domain of un 21.2 7.8E+02 0.017 24.0 19.1 86 333-418 5-98 (177)
385 TIGR03794 NHPM_micro_HlyD NHPM 21.1 1.1E+03 0.024 25.9 15.8 22 462-483 229-250 (421)
386 PF15254 CCDC14: Coiled-coil d 20.9 1.7E+03 0.037 27.9 14.7 55 368-438 393-447 (861)
387 PF03980 Nnf1: Nnf1 ; InterPr 20.9 4.8E+02 0.01 23.6 7.5 70 506-575 31-107 (109)
388 PF02403 Seryl_tRNA_N: Seryl-t 20.8 6.1E+02 0.013 22.6 10.9 85 308-393 8-98 (108)
389 PF06156 DUF972: Protein of un 20.7 3.3E+02 0.0072 25.5 6.5 44 531-574 5-48 (107)
390 KOG1962 B-cell receptor-associ 20.6 7.2E+02 0.016 26.3 9.5 51 367-417 149-199 (216)
391 PRK15422 septal ring assembly 20.6 5.2E+02 0.011 23.6 7.3 52 368-419 17-68 (79)
392 PF15450 DUF4631: Domain of un 20.5 1.5E+03 0.032 27.0 29.8 155 389-552 336-504 (531)
393 PF14197 Cep57_CLD_2: Centroso 20.3 2.6E+02 0.0057 24.3 5.4 29 384-412 34-62 (69)
394 PRK13169 DNA replication intia 20.3 5.4E+02 0.012 24.4 7.8 52 337-388 4-55 (110)
395 PF03904 DUF334: Domain of unk 20.2 9.4E+02 0.02 25.8 10.2 65 279-349 48-112 (230)
396 PF13863 DUF4200: Domain of un 20.2 6.6E+02 0.014 22.8 11.9 60 458-524 44-103 (126)
397 PF15188 CCDC-167: Coiled-coil 20.1 2.9E+02 0.0063 25.3 5.8 60 223-282 2-65 (85)
No 1
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=100.00 E-value=4.3e-34 Score=278.68 Aligned_cols=187 Identities=18% Similarity=0.269 Sum_probs=184.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005903 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (670)
++++|++++|+|++|++++++|++|+.+|.+|+.+++++|+|.+|++|+|++|+.++++||+.+|.||++++ +
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk-------~ 74 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK-------H 74 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 005903 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (670)
Q Consensus 447 saEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke 526 (670)
+|+++++ ||++|+|+++||| ++|+++|.|||.+|++|. +|+++++++++++++|+++.++++++.+
T Consensus 75 iaE~adr----K~eEVarkL~iiE---~dLE~~eeraE~~Es~~~-------eLeEe~~~~~~nlk~l~~~ee~~~q~~d 140 (205)
T KOG1003|consen 75 IAEKADR----KYEEVARKLVIIE---GELERAEERAEAAESQSE-------ELEEDLRILDSNLKSLSAKEEKLEQKEE 140 (205)
T ss_pred HHHHHHH----HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence 9999999 9999999999999 999999999999999999 9999999999999999999999999999
Q ss_pred hh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 527 AS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 527 ~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
.| +|++++|++|++|.|++|+++||+|++.+...+.+|+.+...||+|
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999987
No 2
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.96 E-value=9e-29 Score=245.57 Aligned_cols=213 Identities=23% Similarity=0.342 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhh-------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 005903 341 EKVKSLEEQLKESEIRLQNANACFQT-------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (670)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEe-------sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerel 413 (670)
+|+..++.+++.+..++..+..++.. +++++++|+|+|++|++++.++++|+..+..||..+++.++++.|.+
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888887777777766666644 48899999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 005903 414 NFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL 493 (670)
Q Consensus 414 kvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~L 493 (670)
++|++|...+++|++.||.||++++ .+++.++. +|+++.+++.+++ +++.++++|++.+|++|.
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~-------~~~ee~e~----k~~E~~rkl~~~E---~~Le~aEeR~e~~E~ki~-- 144 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAK-------RRAEEAER----KYEEVERKLKVLE---QELERAEERAEAAESKIK-- 144 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHH----HHHHCHHHHHHHH---HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHhhhchhHH--
Confidence 9999999989999999999999988 99999999 9999999999999 999999999999999999
Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 005903 494 SEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563 (670)
Q Consensus 494 se~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~kee 563 (670)
+|+++|..++++|++||++..+|+++++.| +|+++.|++++++.|.+|+.++|+|++.|...+.+
T Consensus 145 -----eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 145 -----ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHhhc
Q 005903 564 NKLLVEKLQYS 574 (670)
Q Consensus 564 nK~L~ekLd~T 574 (670)
|+.+..+||+|
T Consensus 220 ~~~~~~eld~~ 230 (237)
T PF00261_consen 220 YKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 3
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=99.22 E-value=1.9e-10 Score=108.54 Aligned_cols=107 Identities=22% Similarity=0.348 Sum_probs=99.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH---HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 005903 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (670)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdE 408 (670)
.+.|+.+|++|+..||.+|+.++.+|..++..++.... .+-+|+|+|+.|++++.+|+.++..|..|+.++...+++
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~ 112 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEH 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47899999999999999999999999999999998854 344899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 005903 409 LSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (670)
Q Consensus 409 LerelkvLesrs~~deEK~~~LE~QLKEa~ 438 (670)
++|.++.|+.+....+.|++.|+.++++++
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888999999999988764
No 4
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.19 E-value=5e-10 Score=112.12 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=148.4
Q ss_pred hhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhH
Q 005903 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (670)
Q Consensus 289 kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE 368 (670)
|++.++.+|-.+..|...+..+|+.....+. . -+.++.+|+.|++.+|++|+.++..|..+..+++..+
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~----------~-aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAE----------K-AEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5666777776666666666666666553333 2 2689999999999999999999999888888887753
Q ss_pred H-------HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHH
Q 005903 369 E-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (670)
Q Consensus 369 ~-------EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QL 441 (670)
. ....|+++.....+.+..-|.++..|...+..+..-.++..+.+.++++.=...++|++.+|.++++.+.+|
T Consensus 71 ~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 71 KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 3 233333333333333333333333333333333333444445555555542223567888888888877777
Q ss_pred HHhhhhh---HhHHHHHhhhHH-HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHH
Q 005903 442 QQAKVSS---EASQEQQSMLYS-AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (670)
Q Consensus 442 qhA~asa---Eas~eqQ~mkys-eisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~s 517 (670)
....... +++.. +|+ ...+.+.-|.+|..++..||.|++.||.+|..|-..+..|+.+|.....+.+++..-
T Consensus 151 ~~~~~~lk~lE~~~~----~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 151 KSVGNNLKSLEASEE----KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665443 34444 333 456677778888999999999999999999988888888888888888888888877
Q ss_pred HHHHh
Q 005903 518 LNRAN 522 (670)
Q Consensus 518 l~kA~ 522 (670)
++.+.
T Consensus 227 ld~~l 231 (237)
T PF00261_consen 227 LDQTL 231 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.08 E-value=6.2e-06 Score=95.13 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 005903 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (670)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelk 414 (670)
++..++.++..+++.++....++..+....+....++.++...++..+.....+++.+..+..++..+.....+++.+++
T Consensus 510 ~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (880)
T PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555666666666666666666666666666
Q ss_pred hhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhH-----HHHHHHHhhhhhhhhhhhhhhhhh
Q 005903 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM-----ETLIEDLKSKVSKAESKTESVEEQ 489 (670)
Q Consensus 415 vLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdm-----e~vIEdLk~Kl~rAE~RaEsaEsK 489 (670)
.|+.. ..-...+..++..+.+.+..+...+..-+....+-..+-..+..+ ..-.+.+..++.+++..++.++.+
T Consensus 590 ~le~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~ 668 (880)
T PRK02224 590 SLERI-RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668 (880)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66521 101122222233332222222211111111111111122222222 234455666777777777777777
Q ss_pred hhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 005903 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (670)
Q Consensus 490 c~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t 528 (670)
+. ++..++..+..++..++..++.....+..+
T Consensus 669 l~-------~~~~~~~~l~~~i~~~~~~~e~~~~~~~~~ 700 (880)
T PRK02224 669 LD-------ELREERDDLQAEIGAVENELEELEELRERR 700 (880)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 777777777777777777776664444443
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=99.07 E-value=1.7e-05 Score=91.52 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.2
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 005903 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEA 272 (670)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EA 272 (670)
.++.++...+...+++..++...+.....++.....+....-.+
T Consensus 262 ~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46666666666667777777777777777776666655544333
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.84 E-value=1.5e-05 Score=92.13 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005903 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (670)
Q Consensus 501 eEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s 559 (670)
..++.-++.+++.|...++.+...+ ..+..|.++...-...|...++.|+..|..
T Consensus 964 ~~~~~~l~~~i~~lg~aiee~~~~~----~~a~er~~~l~~q~~dL~~~~~~L~~~i~~ 1018 (1179)
T TIGR02168 964 EDDEEEARRRLKRLENKIKELGPVN----LAAIEEYEELKERYDFLTAQKEDLTEAKET 1018 (1179)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777766555554433 112244444444444444444444444433
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.84 E-value=3e-05 Score=90.36 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=16.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (670)
..++..|..+...-..+|...++.|++-|..+.
T Consensus 981 ~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 981 YEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555554443
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.82 E-value=6.7e-06 Score=98.72 Aligned_cols=259 Identities=21% Similarity=0.296 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 005903 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (670)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelk 414 (670)
++..+++....++..+..+...........+..+.++...+.++..++.++..-+.+.+....++..+.+...+++..+.
T Consensus 766 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~ 845 (1163)
T COG1196 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333333444444444444444555554444444455555555555555555444
Q ss_pred hhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHh-------HHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhh
Q 005903 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA-------SQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVE 487 (670)
Q Consensus 415 vLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEa-------s~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaE 487 (670)
.|+.. +..++.++.+...+++++..-... ...+...+-..+.....=+.+++.+..+++.++..++
T Consensus 846 ~l~~~-------~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 918 (1163)
T COG1196 846 ELEEE-------LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELE 918 (1163)
T ss_pred HHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 333333333333333332211111 1111111111222222333333344445555555555
Q ss_pred hhhhhcccchhhHHHHHH---------HHHhhHHHHHHH---HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005903 488 EQCIVLSEDNFELKNKQS---------FMRDKIKILESS---LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQK 555 (670)
Q Consensus 488 sKc~~Lse~N~ELeEEL~---------~l~~~lKsLE~s---l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLed 555 (670)
.+|..+......+.+++. .++.+++.++.. +...|-+-..-.++...|.++...-...|...+++|++
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~ 998 (1163)
T COG1196 919 AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLE 998 (1163)
T ss_pred HHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555422222222222221 344555555555 22233223333777888889999999999999999999
Q ss_pred HHhhhHHhhHHH-HHHHhhccCCCCceecccCCCCCCccccccCCC
Q 005903 556 QVYSLTSENKLL-VEKLQYSGKSSSATMYNAGDTDDKELLINPTNN 600 (670)
Q Consensus 556 QL~s~keenK~L-~ekLd~T~k~~~~tm~~~gd~~~~~~~~~~~~~ 600 (670)
.|.....+.+.. .+.++..+++-+.+.-.-+.||.+.+.+...++
T Consensus 999 ~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd 1044 (1163)
T COG1196 999 VIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELTEPDD 1044 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCc
Confidence 999877666543 666666655555554444557777776555443
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.80 E-value=5.9e-05 Score=87.95 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=24.1
Q ss_pred chHHHHHHHHHH---HHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHH
Q 005903 209 NADQQRHILRML---EKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEE 260 (670)
Q Consensus 209 t~eqqR~iLrML---ekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE 260 (670)
.+..+|.+|..+ .....+-.+...+|.....+..+|+..+.........++.
T Consensus 151 ~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~ 205 (1164)
T TIGR02169 151 SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRR 205 (1164)
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788777553 1112222233344444444444444444444444444433
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.71 E-value=0.00044 Score=84.41 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=35.9
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 005903 107 SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (670)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (670)
.++.+++.-+.++..++......+.+|.- .++ - ..-..++..-|.+.++.+...+...+.|+-+..+|.
T Consensus 598 ~el~~~e~~l~~~~~~l~~~~~eL~~~~~--~i~--~---~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 666 (1311)
T TIGR00606 598 KELASLEQNKNHINNELESKEEQLSSYED--KLF--D---VCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYS 666 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh--c---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444432 000 0 113455666777777777777776666665555544
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.67 E-value=0.00014 Score=84.39 Aligned_cols=57 Identities=19% Similarity=0.049 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005903 498 FELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQ 554 (670)
Q Consensus 498 ~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLe 554 (670)
.+|...+.-++..+..++.....|.++-+.+ ..|+....+-.+..+.++..+..++-
T Consensus 968 ~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888886666654333333433333 45555555555555555555555544
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.46 E-value=0.0047 Score=78.09 Aligned_cols=347 Identities=20% Similarity=0.222 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHH
Q 005903 214 RHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIV 293 (670)
Q Consensus 214 R~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~ 293 (670)
+..-.++.|.-..--.++.++...+.-...+.........+++-+|+........+.+.+--+.- ++....||...
T Consensus 946 ~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~----l~k~~~kle~~ 1021 (1930)
T KOG0161|consen 946 EELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKS----LNKAKAKLEQQ 1021 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33444444444444455555555554444455555555556666666655555555444333222 23445556666
Q ss_pred hhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------
Q 005903 294 QFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------ 367 (670)
Q Consensus 294 qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------ 367 (670)
.-+|.+...||...+-.++...-.|+ ..|.-+ -+.+..+..+...|+.+++.-...+.+.+.+++.-
T Consensus 1022 l~~le~~le~e~~~r~e~Ek~~rkle---~el~~~----~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~ 1094 (1930)
T KOG0161|consen 1022 LDDLEVTLEREKRIRMELEKAKRKLE---GELKDL----QESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQ 1094 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666666655555543332222 222111 12233355566666666666666666666666553
Q ss_pred -HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc------------------chhhh
Q 005903 368 -QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSN------------------TKKVG 428 (670)
Q Consensus 368 -E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~d------------------eEK~~ 428 (670)
+..|..|.++|.+|+++++.-....+-++-+...++..-.++++++...-+...+- ++..-
T Consensus 1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666666655555555555555555555555555544332221100 11222
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhHH---H----HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHH
Q 005903 429 ILENQLRDLEIQLQQAKVSSEASQ---E----QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (670)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~---e----qQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELe 501 (670)
..|.++...+ -.|+..+++-.. . +|. +--.=+++..-+.+|...+.....+-..+|.+|..+...+.+|.
T Consensus 1175 ~~e~~~~~lr--~~~~~~~~el~~qle~l~~~k~~-lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq 1251 (1930)
T KOG0161|consen 1175 DHEAQIEELR--KKHADSLAELQEQLEQLQKDKAK-LEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQ 1251 (1930)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Confidence 2233332222 112222221111 0 001 11122344455555556666555565666777764444444555
Q ss_pred HHHHHHHhhHHHHHHHHHHHhHH---HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 502 NKQSFMRDKIKILESSLNRANIE---KAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 502 EEL~~l~~~lKsLE~sl~kA~q~---ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
..+.-+..-+.+|=.+..+-..+ -...+.+++.-..-+-+....+..+++.++.|+.....+.-.++..+.+.
T Consensus 1252 ~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l 1327 (1930)
T KOG0161|consen 1252 LKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQL 1327 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444333322222222211 11225666666666667777777777777777777777776666666554
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.41 E-value=0.0013 Score=82.75 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=54.1
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH-HHHHHHHh--H-HHHhh-------H
Q 005903 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL-ESSLNRAN--I-EKAAS-------A 529 (670)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsL-E~sl~kA~--q-~ke~t-------l 529 (670)
.|+.+..-|.||..+++.-+....-+|.+-. +|..||..+...|... .....+.. . ++.++ -
T Consensus 1098 ~i~eL~~~i~el~e~le~er~~r~K~ek~r~-------dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~le 1170 (1930)
T KOG0161|consen 1098 QIKELEARIKELEEELEAERASRAKAERQRR-------DLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLE 1170 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544444444444444 5666666665555543 11111111 1 11111 3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q 005903 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (670)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ 568 (670)
++.......+.++-.+++..+..|..|+-.++.....+.
T Consensus 1171 ee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~le 1209 (1930)
T KOG0161|consen 1171 EETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLE 1209 (1930)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777888888888888888888775555443
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.40 E-value=0.013 Score=71.94 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=28.6
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 005903 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLE 271 (670)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~E 271 (670)
+++++...++.....+..++..+.++...++......-.++.+
T Consensus 588 ~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~ 630 (1311)
T TIGR00606 588 QTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD 630 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666666667777777777777777776666666663
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=98.35 E-value=0.013 Score=67.97 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=19.1
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 005903 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL 493 (670)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~L 493 (670)
|.+......-+.+++.++.....|.+..+.++.-|
T Consensus 548 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444455555555666666666666666644
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.33 E-value=0.0028 Score=76.75 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=34.8
Q ss_pred hhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 005903 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (670)
Q Consensus 479 AE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t 528 (670)
.+.+....+.++-.|-..|+.--+|...+..++..|....+...+.+...
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l 996 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777888888777777777777777766666655555444
No 18
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.24 E-value=0.0018 Score=76.12 Aligned_cols=275 Identities=23% Similarity=0.296 Sum_probs=168.5
Q ss_pred ccccccchhHHHHHHHhHHHHHhh----------hhHHHHHhhcC--ChhHHH-HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005903 297 LNGSLQRESELKSKLGDFIEQLKA----------KDMVLQKLEST--KNSEVL-TMKEKVKSLEEQLKESEIRLQNANAC 363 (670)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~----------k~~~Lekl~~s--~esEv~-sLqkKvksLE~qLdes~eQL~~A~ak 363 (670)
|.-+..-|-+|+..+.+..|.|+. |=.+|+++.-- .-.|+. -+..+...|+++|.........|.+-
T Consensus 219 l~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ 298 (1243)
T KOG0971|consen 219 LPSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEA 298 (1243)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666553 12233332211 223443 36678888889988888888777766
Q ss_pred HhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC----CCCc----c---hhhhhHHH
Q 005903 364 FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----NDSN----T---KKVGILEN 432 (670)
Q Consensus 364 lEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesr----s~~d----e---EK~~~LE~ 432 (670)
-+..-.++++...-|+.+--+-+=||+|+++-...++-+.+-++|++-.+-.|+.- |+.. . .+++..-.
T Consensus 299 ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~ 378 (1243)
T KOG0971|consen 299 KERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNA 378 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHH
Confidence 66677899999999999999999999999999999999999999999998888642 2211 1 22233333
Q ss_pred HHHHHHHHHHHhhhhhHhHHH------HHhhhHHHHHhHHHHHHHHhhhhhhhhhh----------hhhhhhhhhhcccc
Q 005903 433 QLRDLEIQLQQAKVSSEASQE------QQSMLYSAIWDMETLIEDLKSKVSKAESK----------TESVEEQCIVLSED 496 (670)
Q Consensus 433 QLKEa~~QLqhA~asaEas~e------qQ~mkyseisdme~vIEdLk~Kl~rAE~R----------aEsaEsKc~~Lse~ 496 (670)
.||++=..|.- -+|.+-+. .-.+|.+++.-...+-|-|+.++.-||.- |=.||.=..-||+.
T Consensus 379 rLKdalVrLRD--lsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdk 456 (1243)
T KOG0971|consen 379 RLKDALVRLRD--LSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDK 456 (1243)
T ss_pred HHHHHHHHHHh--cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhh
Confidence 45554333321 11211111 11233344444334444344433333332 22466667889999
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHH-------HHHHHHHH
Q 005903 497 NFELKNKQSFMRDKIKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVM-------QLATQREL 552 (670)
Q Consensus 497 N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t-----------------lKeae~Rak~aE~lV~-------KL~~Erdr 552 (670)
|++|++-++-++.-+.+||+-.+--.|--+.- .|++..|...+..+|- |.-.-+..
T Consensus 457 nlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~ 536 (1243)
T KOG0971|consen 457 NLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAH 536 (1243)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999987554332222211 5677777666655443 33333455
Q ss_pred HHHHHhhhHHhhHHHHHHHhh
Q 005903 553 IQKQVYSLTSENKLLVEKLQY 573 (670)
Q Consensus 553 LedQL~s~keenK~L~ekLd~ 573 (670)
|++||--+++.+-...++.++
T Consensus 537 Lqdqlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 537 LQDQLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HHHHHHHHHhhhhhhHHHhcC
Confidence 666666666666666555554
No 19
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.15 E-value=0.0056 Score=76.25 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 005903 206 KMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW 266 (670)
Q Consensus 206 ~mqt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~ 266 (670)
=|.+++++|.++-=.=+-=.+--.-.++|.....+-.++...+...+.....|+..+...-
T Consensus 274 ~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 274 YMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889998888764432222344445555666666666666666666666666666655543
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.14 E-value=0.023 Score=71.50 Aligned_cols=235 Identities=20% Similarity=0.231 Sum_probs=138.0
Q ss_pred hhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchh
Q 005903 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES 305 (670)
Q Consensus 226 ~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs 305 (670)
+..-|++.+...+.-...++..| ..++....-.-+|+=-..|.++.+++.-..+-.|-+.+|..+.-..++=.
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l-------~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~ 727 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQL-------EKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVH 727 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433 34555666677888888899999999999999999999988887777777
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCC----------hhHHHHHHHHHHHHHHHHHHHH---------------------
Q 005903 306 ELKSKLGDFIEQLKAKDMVLQKLESTK----------NSEVLTMKEKVKSLEEQLKESE--------------------- 354 (670)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s~----------esEv~sLqkKvksLE~qLdes~--------------------- 354 (670)
.+.+-|-.|-+.++.-+..+..|.+.+ -.|+..|......|-..++..+
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i 807 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRI 807 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777777776651 1233333333333322222222
Q ss_pred ----HHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhH
Q 005903 355 ----IRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGIL 430 (670)
Q Consensus 355 ----eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~L 430 (670)
-.|+.++.++ ++++..+.+.+..+.-.+..|..+..+.......+-..+......+..|+. ++..|
T Consensus 808 ~eL~~el~~lk~kl---q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~-------k~~eL 877 (1822)
T KOG4674|consen 808 KELERELQKLKKKL---QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI-------KLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 2222222221 233444444444555555556666666666666666666666666665555 46677
Q ss_pred HHHHHHHHHHHHH--hhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhh
Q 005903 431 ENQLRDLEIQLQQ--AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAES 481 (670)
Q Consensus 431 E~QLKEa~~QLqh--A~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~ 481 (670)
+++|+..+.|... ++.+.++..- +-+++...+-=+++|+.+|-.|..
T Consensus 878 ~k~l~~~~~~~~~l~~~~~~~d~~~----~~~~Lr~~~eq~~~l~~~L~~a~s 926 (1822)
T KOG4674|consen 878 EKRLKSAKTQLLNLDSKSSNEDATI----LEDTLRKELEEITDLKEELTDALS 926 (1822)
T ss_pred HHHHHHhHHHHhhccccchhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766655543 3233444333 345555556666666666554443
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.08 E-value=0.0066 Score=66.73 Aligned_cols=105 Identities=10% Similarity=0.176 Sum_probs=62.5
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhHhHH---HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhH
Q 005903 424 TKKVGILENQLRDLEIQLQQAKVSSEASQ---EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (670)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~asaEas~---eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~EL 500 (670)
..++..|+.++.+.+.|+......-.... ++-......+......+...++.+.....+....+.++.-|...+.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 34555555555555555544443333221 111223344555555566666666666666777777777677777788
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 005903 501 KNKQSFMRDKIKILESSLNRANIEKAAS 528 (670)
Q Consensus 501 eEEL~~l~~~lKsLE~sl~kA~q~ke~t 528 (670)
+++|..+..+++.+.........++..+
T Consensus 378 ~~~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 378 AEELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887766666655554443
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=98.05 E-value=0.052 Score=63.08 Aligned_cols=8 Identities=0% Similarity=0.522 Sum_probs=3.5
Q ss_pred cCCccccc
Q 005903 74 GDDLETLV 81 (670)
Q Consensus 74 ~~d~E~~~ 81 (670)
-.+|..+.
T Consensus 134 Qg~~~~~~ 141 (880)
T PRK03918 134 QGEIDAIL 141 (880)
T ss_pred ccchHHHh
Confidence 34444443
No 23
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.99 E-value=0.0091 Score=69.92 Aligned_cols=287 Identities=17% Similarity=0.216 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhhH---------HhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhc
Q 005903 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQI---------VQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (670)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~---------~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~ 330 (670)
+.+++.--|.+.|+|...=|+..-..+..++=- ++.+=+-+-+-+.-++.-.--.+++|.+.++.+--|.-
T Consensus 34 es~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn 113 (1265)
T KOG0976|consen 34 ESHEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQN 113 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456677778888888888777665555554421 11111222222222222222223333333333333322
Q ss_pred C---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHh
Q 005903 331 T---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES----AEEKVTQLT 403 (670)
Q Consensus 331 s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~t----AesKleeLS 403 (670)
+ .++|...||.-++.+++++++.+..|.+.++.++.-+.++++-.+.|.-.=+++-..-..+.. -.+|++++.
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~ 193 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEAN 193 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHH
Confidence 2 466777777777777777777777777777777766666666666665555555443333332 233444444
Q ss_pred hhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhH---HHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 005903 404 DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS---QEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (670)
Q Consensus 404 eTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas---~eqQ~mkyseisdme~vIEdLk~Kl~rAE 480 (670)
.-|..+++.++-++......++|. ++=.+..+.. -+...+.. ..+|. ...++---.+|+++..++.-
T Consensus 194 ~en~~le~k~~k~~e~~~~nD~~s-le~~~~q~~t-----q~vl~ev~QLss~~q~--ltp~rk~~s~i~E~d~~lq~-- 263 (1265)
T KOG0976|consen 194 REKKALEEKLEKFKEDLIEKDQKS-LELHKDQENT-----QKVLKEVMQLSSQKQT--LTPLRKTCSMIEEQDMDLQA-- 263 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHH-----HHHHHHHHHHHHhHhh--hhhHhhhhHHHHHHHHHHHH--
Confidence 444445555555555433222221 1111111000 00111111 11111 11111111334433333221
Q ss_pred hhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005903 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQV 557 (670)
Q Consensus 481 ~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL 557 (670)
-+...|.|-.-|--.|.-|..||+...-.++.+..-|+...+---...-+++.-+++.+--+++|..+.-+|.-.|
T Consensus 264 -sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~L 339 (1265)
T KOG0976|consen 264 -SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCAL 339 (1265)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444455556677777777777777777666655554444433444444444444444444433333333
No 24
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.97 E-value=0.021 Score=69.11 Aligned_cols=299 Identities=20% Similarity=0.165 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccc-hHHHHhhhhHHHHhhhh
Q 005903 213 QRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAEN-SAEVLMGISKEMLGRFQ 291 (670)
Q Consensus 213 qR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAEN-a~EvL~g~skel~gkLq 291 (670)
|-.-=|.|||+=|..--.++...+.+.+.++++.=|..-.-.-...|+.|+.|-+.++-.+- .++-|+|.-++-+.+|.
T Consensus 1449 ~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~ 1528 (1758)
T KOG0994|consen 1449 QQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLP 1528 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Confidence 33445788999998888899999999999998888877666777888889888888876653 46778888888888887
Q ss_pred HHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHH
Q 005903 292 IVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQL 371 (670)
Q Consensus 292 ~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EV 371 (670)
.+..=|+-... ++ +--++| .+++..-.++...+..+.+...+.|+.|....-.++.-|
T Consensus 1529 nVd~IL~~T~~---di-----~ra~~L--------------~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai 1586 (1758)
T KOG0994|consen 1529 NVDAILSRTKG---DI-----ARAENL--------------QSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAI 1586 (1758)
T ss_pred cHHHHHHhhhh---hH-----HHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655542211 10 001111 255666667777777888888888888877777777778
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhH
Q 005903 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (670)
Q Consensus 372 aaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas 451 (670)
..-.+-|++....|.+++++...|+.+..-++++..+|.+.+..|+......+.-+..-|+-.--++.+.+.|+.-.+.-
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~l 1666 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEIL 1666 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999998888887654333333333333333332333333222211
Q ss_pred HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHH
Q 005903 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKE 531 (670)
Q Consensus 452 ~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKe 531 (670)
+. .|+.+.+ ++++--.-..-|..||| .|+.+.+.| -...++|..-+||
T Consensus 1667 q~----~~~~~~~---l~~~r~~g~~~ar~rAe---------------------~L~~eA~~L----l~~a~~kl~~l~d 1714 (1758)
T KOG0994|consen 1667 QK----YYELVDR---LLEKRMEGSQAARERAE---------------------QLRTEAEKL----LGQANEKLDRLKD 1714 (1758)
T ss_pred HH----HHHHHHH---HHHHHhhcchhHHHHHH---------------------HHHHHHHHH----HHHHHHHHHHHHH
Confidence 11 3333322 22311112222333332 233333222 2334455666777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Q 005903 532 VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENK 565 (670)
Q Consensus 532 ae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK 565 (670)
++.-..--++-+...+.++.+|+..+-++....+
T Consensus 1715 Le~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1715 LELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7766666666777777778888877777654433
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.94 E-value=0.15 Score=64.56 Aligned_cols=297 Identities=21% Similarity=0.247 Sum_probs=141.6
Q ss_pred HHHHHHHh-----------hhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHH----------HHHHhccch
Q 005903 217 LRMLEKSL-----------ARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW----------GRFLEAENS 275 (670)
Q Consensus 217 LrMLekSl-----------a~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~----------er~~EAENa 275 (670)
|.||++.| +|-.+|..-+..-.+....+...|++...-...++-.+..+- .|+.--
T Consensus 691 le~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e--- 767 (1822)
T KOG4674|consen 691 LENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQE--- 767 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66666665 566667777887778888888888887777777766555432 222211
Q ss_pred HHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHH
Q 005903 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKE 352 (670)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s---~esEv~sLqkKvksLE~qLde 352 (670)
.+-|...-..++..+-.+|+..+-...-+++.+.++++-++.|.. .|.++... ..+++.+++ ..+..++..
T Consensus 768 ~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~---el~~lk~klq~~~~~~r~l~---~~~~~~l~~ 841 (1822)
T KOG4674|consen 768 LEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELER---ELQKLKKKLQEKSSDLRELT---NSLEKQLEN 841 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---hhhhhHHHH
Confidence 122223333444444455555555556667777777766666652 33333222 122222221 122223333
Q ss_pred HHHHHHHhHhh-------HhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHhhhhHHHHHHhhhhhcCCCCc
Q 005903 353 SEIRLQNANAC-------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK--VTQLTDTNLELSEEINFLKGNNDSN 423 (670)
Q Consensus 353 s~eQL~~A~ak-------lEesE~EVaaLerrIelLKE~l~rAEsRa~tAesK--leeLSeTNdELerelkvLesrs~~d 423 (670)
+.-++..+... +.-.+..++.|+..+..|+..|.-.+.|..+-.++ .+.++.-.+.+..+
T Consensus 842 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~----------- 910 (1822)
T KOG4674|consen 842 AQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKE----------- 910 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHH-----------
Confidence 22222211111 11113333444444444444444444444443333 22222222222111
Q ss_pred chhhhhHHHHHHHHHHHHHHhh---hhhHhHHHHHhhhHHHHH-hHHHHHHHHhhhhhhhhhhhhhhhhhhhhcc-----
Q 005903 424 TKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYSAIW-DMETLIEDLKSKVSKAESKTESVEEQCIVLS----- 494 (670)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~---asaEas~eqQ~mkyseis-dme~vIEdLk~Kl~rAE~RaEsaEsKc~~Ls----- 494 (670)
.+++..|..+|+.+..+..+=+ .+.+.+-.+=.-.|++.. ..++=|+.+..++--.|.|.-..+..|.-|.
T Consensus 911 ~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~ 990 (1822)
T KOG4674|consen 911 LEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELEL 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2345555555555554433333 222222221111233221 1223333333333333333222222233222
Q ss_pred ------cchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHH
Q 005903 495 ------EDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN 533 (670)
Q Consensus 495 ------e~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae 533 (670)
..++.+..+++.+++.++++.....+|+.....+=.++.
T Consensus 991 ~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~ 1035 (1822)
T KOG4674|consen 991 STKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLK 1035 (1822)
T ss_pred cccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346688899999999999999999998887777633333
No 26
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.94 E-value=0.055 Score=60.98 Aligned_cols=329 Identities=18% Similarity=0.221 Sum_probs=159.4
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHHHHhhhhHHHHhhhhHHhhhccccccc
Q 005903 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAEN-----SAEVLMGISKEMLGRFQIVQFNLNGSLQR 303 (670)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAEN-----a~EvL~g~skel~gkLq~~qf~L~as~~R 303 (670)
+.-+.|..++.+.++|+.+|..+..+...-.+.++..--|+=+.+. ++...+-.+.....+....-..|...-+.
T Consensus 59 ~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~E 138 (522)
T PF05701_consen 59 QALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQE 138 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677789999999999998888777777777666556554432 12222222233333333333333322211
Q ss_pred hhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH--------------
Q 005903 304 ESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE-------------- 369 (670)
Q Consensus 304 Esel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~-------------- 369 (670)
=..++.-+.++. ..|+.++.+.... .+-...-.+++..|-.++...++-+.++.....+++.
T Consensus 139 L~~lr~e~~~~~---~~k~~A~~~aeea-~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~ 214 (522)
T PF05701_consen 139 LEKLRQELASAL---DAKNAALKQAEEA-VSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAE 214 (522)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 2345555554444 3344445567777777777777777666544333321
Q ss_pred ----HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC----cchhhhhHHHHHHHHHHHH
Q 005903 370 ----QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS----NTKKVGILENQLRDLEIQL 441 (670)
Q Consensus 370 ----EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~----deEK~~~LE~QLKEa~~QL 441 (670)
++..-+..++.|+.++ +.+...+.|+...+.-...|..+++.....-.. ...+...+...|.-....|
T Consensus 215 ~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~EL 290 (522)
T PF05701_consen 215 EWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKEL 290 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHH
Confidence 2222333333333333 233334444444444444444444433331000 0122223333344444444
Q ss_pred HHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 005903 442 QQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (670)
Q Consensus 442 qhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA 521 (670)
..++.........-+.+...+..+..=++..|..+.+...|...+...+. .|+.||.-+++.+........++
T Consensus 291 e~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~-------~L~~eL~~~r~eLea~~~~e~~~ 363 (522)
T PF05701_consen 291 EEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVS-------SLEAELNKTRSELEAAKAEEEKA 363 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-------hHHHHHHHHHHHHHHHHhhhcch
Confidence 45554444433322223344444444445555555566666666666666 88888888888887776665554
Q ss_pred hHHHHhh---HHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHh
Q 005903 522 NIEKAAS---AKEV-------NHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (670)
Q Consensus 522 ~q~ke~t---lKea-------e~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (670)
...-... +..+ -.-+..+..=+.++..+++.....|.+...+......+..
T Consensus 364 k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 364 KEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321111 3332 2233334444444445555554445444444444444433
No 27
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.90 E-value=0.00063 Score=64.79 Aligned_cols=139 Identities=27% Similarity=0.285 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhh
Q 005903 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (670)
Q Consensus 378 IelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m 457 (670)
++-|+-+.+.|..|+..+++++..+...+.+.+.++..|.. |+..||.+|..+..+|..|+..++.+....+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~-------K~~~lE~eld~~~~~l~~~k~~lee~~~~~~- 73 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK-------KNQQLEEELDKLEEQLKEAKEKLEESEKRKS- 73 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Confidence 56788899999999999999999999999999999999987 4788888888888888887777777754111
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 005903 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (670)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak 537 (670)
.-+ ++..++- -|++||.-...+|+..... +.++..++.
T Consensus 74 ~~E------------------------~l~rriq-------~LEeele~ae~~L~e~~ek-----------l~e~d~~ae 111 (143)
T PF12718_consen 74 NAE------------------------QLNRRIQ-------LLEEELEEAEKKLKETTEK-----------LREADVKAE 111 (143)
T ss_pred hHH------------------------HHHhhHH-------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHhH
Confidence 011 2222233 4455555554444433222 567778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHH
Q 005903 538 LMMEMVMQLATQRELIQKQVYSLTSENKL 566 (670)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (670)
-++|-|..|..+++.++..+-.+..+|+.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888887765
No 28
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.86 E-value=0.0031 Score=63.60 Aligned_cols=183 Identities=19% Similarity=0.294 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH-------HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeT 405 (670)
+.+|.+|..+++.||.+++.+++.+..|..++++.+. .+..|+++.+.+++.+...+..+..|-.--+.+-.-
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777766522 333455555555555444444433333222222222
Q ss_pred hHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhh---hhhHhHHHHHhhhHH-HHHhHHHHHHHHhhhhhhhhh
Q 005903 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYS-AIWDMETLIEDLKSKVSKAES 481 (670)
Q Consensus 406 NdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~---asaEas~eqQ~mkys-eisdme~vIEdLk~Kl~rAE~ 481 (670)
-++--+.|-++++.=-..++|++.=|.+.++...++.+-. .+...+.+ +|. ..-.-...|..|-.|+--|++
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee----~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEE----KLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 2334444554444322235566666666665554444332 22233333 222 112222344444478889999
Q ss_pred hhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHH
Q 005903 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (670)
Q Consensus 482 RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~ 519 (670)
||+.+|-.+.-|-.+=-+|++.+.....+-.++..-++
T Consensus 159 rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 159 RAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred hHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999988884444444444444444444334333333
No 29
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.85 E-value=0.13 Score=60.93 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELere 412 (670)
+.+..-||--+-.|--.|++...++....+.++..+++.+.+...|.++++.++..+.++.....|++-|..+.-+=.+.
T Consensus 335 e~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~q 414 (775)
T PF10174_consen 335 EQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQ 414 (775)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555666666666666666666777777777777777777777777777777766666666555554
Q ss_pred hhhhhcC
Q 005903 413 INFLKGN 419 (670)
Q Consensus 413 lkvLesr 419 (670)
+..++.|
T Consensus 415 l~~~k~R 421 (775)
T PF10174_consen 415 LDEEKER 421 (775)
T ss_pred HHHHHHH
Confidence 4444444
No 30
>PRK01156 chromosome segregation protein; Provisional
Probab=97.66 E-value=0.24 Score=58.35 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=13.5
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhh
Q 005903 146 MEKKLHDCEGSLKESQEHVSELKMQS 171 (670)
Q Consensus 146 ~~~kL~~~~~sLkq~qe~~~eik~qs 171 (670)
++..|.+....++.....+..++.+.
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i 220 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEI 220 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554444
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.31 Score=58.90 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHH
Q 005903 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (670)
Q Consensus 373 aLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~ 452 (670)
-+.+.++.+++++..++.+.-.....+......-.-++..++.-++. -+-|+..|++.++.++.+++....-.+
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~---re~rlkdl~keik~~k~~~e~~~~~~e--- 811 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKAN---RERRLKDLEKEIKTAKQRAEESSKELE--- 811 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh---hHhHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33445566666777777666666655555555555555555543332 134666677777766643333332222
Q ss_pred HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 005903 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (670)
Q Consensus 453 eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~ 522 (670)
. .+.+.-++..=+|.|+......+.-.+..+.+|. .|..|+..++.++...+....++.
T Consensus 812 k----~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~-------~l~~e~~~l~~kv~~~~~~~~~~~ 870 (1174)
T KOG0933|consen 812 K----RENEYERLQLEHEELEKEISSLKQQLEQLEKQIS-------SLKSELGNLEAKVDKVEKDVKKAQ 870 (1174)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHhHHHHHH
Confidence 2 4556777788888999999999999999999999 777777777777777665555443
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.61 E-value=0.12 Score=59.04 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 005903 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (670)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~K 475 (670)
+..++...+.||+.+.....++..+=..+-.+++++-++=+-.-++
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~ae 326 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAE 326 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666554444555666655554333333
No 33
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.59 E-value=0.31 Score=57.91 Aligned_cols=282 Identities=19% Similarity=0.237 Sum_probs=159.8
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 005903 324 VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANA-------CFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (670)
Q Consensus 324 ~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~a-------klEesE~EVaaLerrIelLKE~l~rAEsRa~tAe 396 (670)
+++++...+++-+.++-+=+..+|+++.-......-+.+ .++...+....|.+++.-++-+|.+..+-+....
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445655555555555555555555444333333 3344456777888999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHhhhhhcCCCCcchh-------hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhh---HHHHHhHH
Q 005903 397 EKVTQLTDTNLELSEEINFLKGNNDSNTKK-------VGILENQLRDLEIQLQQAKVSSEASQEQQSML---YSAIWDME 466 (670)
Q Consensus 397 sKleeLSeTNdELerelkvLesrs~~deEK-------~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mk---yseisdme 466 (670)
++|.-++..+.+...-+.+|+..-..-+.+ ++.|-..|.+...|+..+-+..+...+.-+-. ...+.|+.
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877777776542222222 45566667777777777777666666432222 22333444
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHH---------HHHHHHHHHhHHHHhhHHHHH---H
Q 005903 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK---------ILESSLNRANIEKAASAKEVN---H 534 (670)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lK---------sLE~sl~kA~q~ke~tlKeae---~ 534 (670)
-+.+ .|+.+.-.+.|+.+.... +=..+|.....+|. .+-..+++|...++...+.+. .
T Consensus 388 d~~e---~ki~~Lq~kie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~ 457 (775)
T PF10174_consen 388 DKKE---RKINVLQKKIENLEEQLR-------EKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRE 457 (775)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 666666666666665554 55555555555555 666788888888877743322 2
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhccCCCCceecccCCCCCCccccccCCCccchhhhchHhhh
Q 005903 535 RTK-LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAV 613 (670)
Q Consensus 535 Rak-~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~k~~~~tm~~~gd~~~~~~~~~~~~~~~~~~~k~~~~~~ 613 (670)
|.. .-..-...+..+..++...+.++-.+.---.-.+...+- .-.++.++|+--+..+ ..+--...|.+++..
T Consensus 458 ~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~ke-e~s~l~s~~~K~~s~i-----~~l~I~lEk~rek~~ 531 (775)
T PF10174_consen 458 RAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKE-EASKLASSQEKKDSEI-----ERLEIELEKKREKHE 531 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-HHHHHhhccchhhhHH-----HHHHHHHHHhhhHHH
Confidence 211 111122344444444444444443333222222333322 2223444444444433 344555666677766
Q ss_pred hhhhhhcc
Q 005903 614 SLMKSVQA 621 (670)
Q Consensus 614 ~~~~~~~~ 621 (670)
.|-+-++.
T Consensus 532 kl~~ql~k 539 (775)
T PF10174_consen 532 KLEKQLEK 539 (775)
T ss_pred HHHHHHHH
Confidence 66666655
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.43 Score=58.47 Aligned_cols=303 Identities=17% Similarity=0.169 Sum_probs=176.6
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhh-----hHHHHhhhhHHhhhccccccchhHHHHHHH-hHHHH
Q 005903 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI-----SKEMLGRFQIVQFNLNGSLQRESELKSKLG-DFIEQ 317 (670)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~-----skel~gkLq~~qf~L~as~~REsel~sKL~-~~~eq 317 (670)
-.-++.+++.|+..||..-.. ...|+..||-+=.+++. .-+...|+-..+..+.+..--.-+...|.. .+-+.
T Consensus 286 k~~~~k~~e~ek~~lE~~k~~-al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~ 364 (1293)
T KOG0996|consen 286 KENRVKLVEKEKKALEGPKNE-ALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEE 364 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHH
Confidence 334556678888889876554 45688888865544443 222344444444444443332233333332 11111
Q ss_pred ---HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 005903 318 ---LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES 394 (670)
Q Consensus 318 ---L~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~t 394 (670)
.++.+..+......-...+.++++|.+.+|.+--.-+++|.++..+....+.++-...+.+.+++-..+++..-.+.
T Consensus 365 ~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~ 444 (1293)
T KOG0996|consen 365 VEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQK 444 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHH
Confidence 11111111111111133666788888888888888888888888777777777777777777777777777776666
Q ss_pred HHHHHHHHhhh----hHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHH
Q 005903 395 AEEKVTQLTDT----NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (670)
Q Consensus 395 AesKleeLSeT----NdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIE 470 (670)
-.++...|++- +.+|.+.+..|+.++....++...+|+.|.-...|+..|+.=..-+.-+-.++......-..=++
T Consensus 445 ~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e 524 (1293)
T KOG0996|consen 445 CQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVE 524 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655544 44555556667777776777788888888877777777776655555434444444444444556
Q ss_pred HHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHH
Q 005903 471 DLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR 550 (670)
Q Consensus 471 dLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~Er 550 (670)
+||+++....++ .. |..-+|.-+...+. .-.++-..--|++..-.+....+.+++..-|
T Consensus 525 ~lk~~L~~~~~~-------~~-------e~~~~l~~~k~~l~-------~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~r 583 (1293)
T KOG0996|consen 525 ELKGKLLASSES-------LK-------EKKTELDDLKEELP-------SLKQELKEKEKELPKLRKEERNLKSQLNKLR 583 (1293)
T ss_pred HHHHHHHHHHHH-------HH-------HHHHHHHHHHHhhh-------hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666666655544 11 33333333333333 3333333344555555666666777777777
Q ss_pred HHHHH---HHhhhHHhhHHHH
Q 005903 551 ELIQK---QVYSLTSENKLLV 568 (670)
Q Consensus 551 drLed---QL~s~keenK~L~ 568 (670)
+|++. .+++...+|+.|.
T Consensus 584 qrveE~ks~~~~~~s~~kVl~ 604 (1293)
T KOG0996|consen 584 QRVEEAKSSLSSSRSRNKVLD 604 (1293)
T ss_pred HHHHHHHHHHHhhhhhhHHHH
Confidence 76654 5667778888873
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.49 E-value=0.53 Score=58.01 Aligned_cols=233 Identities=22% Similarity=0.304 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHHHhhhhhh-----HHHhHHHHhhhHHHHHhhhhhh---hHH---HHHHHHHHHHHHHHHHhccchHHH
Q 005903 210 ADQQRHILRMLEKSLARELD-----LEKKISELNQNEEQLKLKLHHT---EQV---AFRMEEAAEVVWGRFLEAENSAEV 278 (670)
Q Consensus 210 ~eqqR~iLrMLekSla~eld-----LEkkL~~s~~~eeeLk~kL~~~---eqe---~~~lEE~~~~~~er~~EAENa~Ev 278 (670)
-++.++-++-|+..+..+.. +.........-...++..+++. +++ ....+.+.+..-+..-.+.+....
T Consensus 415 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 494 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEE 494 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777764332 1112222222233344444432 222 222333334444555556666666
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhh-hhHHHHHhhcC--------------------------
Q 005903 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLEST-------------------------- 331 (670)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~-k~~~Lekl~~s-------------------------- 331 (670)
+......+....+..+..|.....+=.+++..+.....+|.. +++-++=|...
T Consensus 495 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l 574 (1201)
T PF12128_consen 495 LQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQL 574 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCee
Confidence 666677777777777777777766666777777777777763 22222222111
Q ss_pred -------------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhH
Q 005903 332 -------------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 392 (670)
Q Consensus 332 -------------------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa 392 (670)
..++.....+ .|+.++.....+++.+....++.+..+...+..+..++.++..++..+
T Consensus 575 ~~~~~~dslyGl~LdL~~I~~pd~~~~ee---~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 651 (1201)
T PF12128_consen 575 VEDSGSDSLYGLSLDLSAIDVPDYAASEE---ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQEL 651 (1201)
T ss_pred cCCCcccccceeEeehhhcCCchhhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122221111 566666677777777777777778888889999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhcC-CCCcchhhhhHHHHHHHHHHHHHHhh
Q 005903 393 ESAEEKVTQLTDTNLELSEEINFLKGN-NDSNTKKVGILENQLRDLEIQLQQAK 445 (670)
Q Consensus 393 ~tAesKleeLSeTNdELerelkvLesr-s~~deEK~~~LE~QLKEa~~QLqhA~ 445 (670)
.++..++..+-.....++.+....... -..-..++..++.+++..+.+++...
T Consensus 652 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 652 KQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888877777766544332 11123445555555555554444444
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.48 E-value=0.092 Score=63.87 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=48.5
Q ss_pred HHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHH----------------------------H
Q 005903 218 RMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGR----------------------------F 269 (670)
Q Consensus 218 rMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er----------------------------~ 269 (670)
|.=+-+.+++-|.++ +.+-...-.+|...|+..+ |=+..+-+++. .
T Consensus 1334 R~e~l~~k~k~~f~~-~~~n~~~L~el~~~l~sL~-----L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~ 1407 (1758)
T KOG0994|consen 1334 RVEELLVKQKGDFGG-LAENSRLLVELRAELSSLP-----LTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAV 1407 (1758)
T ss_pred HHHHHHHHhhhcccc-cccccHHHHHHHHHhcCCC-----CchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchh
Confidence 444444455556555 5454555566777777665 33444444432 2
Q ss_pred HhccchHHHHhhhhHHHHhhhhHHhhhc---cccccchhHHHHHHHhHHHHHhh
Q 005903 270 LEAENSAEVLMGISKEMLGRFQIVQFNL---NGSLQRESELKSKLGDFIEQLKA 320 (670)
Q Consensus 270 ~EAENa~EvL~g~skel~gkLq~~qf~L---~as~~REsel~sKL~~~~eqL~~ 320 (670)
.-|++|..+-+..--.+.+++-..+--| ..+..+=++.+.|-+...+|-++
T Consensus 1408 t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~a 1461 (1758)
T KOG0994|consen 1408 TRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANA 1461 (1758)
T ss_pred cccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3345555554444444555444333333 23334445566666666555543
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.47 E-value=0.34 Score=55.49 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=62.1
Q ss_pred HHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcch----hhhhHHH
Q 005903 357 LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTK----KVGILEN 432 (670)
Q Consensus 357 L~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deE----K~~~LE~ 432 (670)
|......+...+.+.....-.+..|++++-.++++++.+..+...+.+-- +.+...++|.+++-. -+..|-.
T Consensus 264 Lk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL----~~~~~~RDrt~aeLh~aRLe~aql~~ 339 (546)
T PF07888_consen 264 LKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKEL----SDAVNVRDRTMAELHQARLEAAQLKL 339 (546)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33333333333333445555567788888888888888887776654432 222223333222211 1345556
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhh
Q 005903 433 QLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT 483 (670)
Q Consensus 433 QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~Ra 483 (670)
||.++..+|.+++ +.-.++++... ..+.....-|++|+..+.+++...
T Consensus 340 qLad~~l~lke~~--~q~~qEk~~l~-~~~e~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 340 QLADASLELKEGR--SQWAQEKQALQ-HSAEADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6666666665544 22222333312 223333445777888777776544
No 38
>PRK11637 AmiB activator; Provisional
Probab=97.35 E-value=0.14 Score=55.81 Aligned_cols=93 Identities=23% Similarity=0.330 Sum_probs=65.0
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHH
Q 005903 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (670)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~ 384 (670)
++++.+|++...++.... .++..+++++..++.+++..+.++..+..++...+.+++.+++.|..++.+
T Consensus 43 ~~~~~~l~~l~~qi~~~~-----------~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKE-----------KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555433 445566677777777777777777777777777777888888888888888
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhHH
Q 005903 385 LYGAESRAESAEEKVTQLTDTNLE 408 (670)
Q Consensus 385 l~rAEsRa~tAesKleeLSeTNdE 408 (670)
+..++.++......+...-.+.-.
T Consensus 112 I~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777776665544443
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.29 E-value=1 Score=56.99 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
....+.+-..+..+++.|.++..+..+..-.+-+.+++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL 591 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQL 591 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777778888888887777777776666666654
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.28 E-value=0.3 Score=58.60 Aligned_cols=300 Identities=21% Similarity=0.255 Sum_probs=151.6
Q ss_pred hhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHH
Q 005903 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESEL 307 (670)
Q Consensus 228 ldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel 307 (670)
-||.-||.-.|..-.|=+.||--.+-.++.+|-.-+ ...|+.--|.+|.--.+|+.-=
T Consensus 234 rdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqE----------------------fkSkim~qqa~Lqrel~raR~e 291 (1243)
T KOG0971|consen 234 RDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQE----------------------FKSKIMEQQADLQRELKRARKE 291 (1243)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888888888888888775433 2233333333333222222211
Q ss_pred HHHHHhHHHHHh---------------hhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-hhhHHHH
Q 005903 308 KSKLGDFIEQLK---------------AKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF-QTSQEQL 371 (670)
Q Consensus 308 ~sKL~~~~eqL~---------------~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~akl-EesE~EV 371 (670)
..-+...-++.. .|+++=++.++- --||.++++++..||-+|.-.....++-.... -.+--+.
T Consensus 292 ~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesL-Q~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qf 370 (1243)
T KOG0971|consen 292 AKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESL-QQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQF 370 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHH
Confidence 111111111111 123333333322 34555666666666655554444333211110 0012255
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhH
Q 005903 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (670)
Q Consensus 372 aaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas 451 (670)
--++.-+.-||+-+-|-.--...+...--.+.+-..-.+.++..|+...-.-..+++.+|.++...+.|+.-|-. ||+.
T Consensus 371 kqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlG-AE~M 449 (1243)
T KOG0971|consen 371 KQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALG-AEEM 449 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHH
Confidence 667777788888877653333332222222222222223333444332211245788999999999988876643 4555
Q ss_pred HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchh----hHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 005903 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNF----ELKNKQSFMRDKIKILESSLNRANIEKAA 527 (670)
Q Consensus 452 ~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~----ELeEEL~~l~~~lKsLE~sl~kA~q~ke~ 527 (670)
.+|-.-+--.+.++-...||=.++++-+|.= ..+ |-|.|. +|-|||..+.+-.+.|+..-+.| .+
T Consensus 450 V~qLtdknlnlEekVklLeetv~dlEalee~----~EQ---L~Esn~ele~DLreEld~~~g~~kel~~r~~aa----qe 518 (1243)
T KOG0971|consen 450 VEQLTDKNLNLEEKVKLLEETVGDLEALEEM----NEQ---LQESNRELELDLREELDMAKGARKELQKRVEAA----QE 518 (1243)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HH
Confidence 5433222223333333333333344333321 112 224444 45566666655555554433332 23
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005903 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (670)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ke 562 (670)
++=|-..-..-+-++|.+|+..+..+-||..+..+
T Consensus 519 t~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ssee 553 (1243)
T KOG0971|consen 519 TVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEE 553 (1243)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 34444444555678999999999999998665443
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.97 Score=54.94 Aligned_cols=233 Identities=20% Similarity=0.272 Sum_probs=131.8
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcC-------C----hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHh
Q 005903 305 SELKSKLGDFIEQLKAKDMVLQKLEST-------K----NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNE 373 (670)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s-------~----esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaa 373 (670)
.+.+.++..+.+.+..-+..++.++.. + .-++.+|..++.++-...-.....+...+..+..-+.++..
T Consensus 254 ~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~ 333 (1174)
T KOG0933|consen 254 EEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEE 333 (1174)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 445555555555555444444333332 1 23445566666555555555555566666666655778888
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHH-------HHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005903 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS-------EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (670)
Q Consensus 374 LerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELe-------relkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (670)
|...|.+++..+..-+.+....+.-...+-++-.+.. ..+..|..--++.++--..|+.||+.++.++-.|..
T Consensus 334 i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t 413 (1174)
T KOG0933|consen 334 IRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEAST 413 (1174)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHH
Confidence 8889998888888877777765544444433333222 222333222222333467899999999877666665
Q ss_pred hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 005903 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (670)
Q Consensus 447 saEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke 526 (670)
-.+.+.- + +.|....+...++++ ...+..+....+++..+.+-++.|+.++....-...
T Consensus 414 ~~k~a~~----k---~e~~~~elk~~e~e~--------------~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 414 EIKQAKL----K---LEHLRKELKLREGEL--------------ATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred HHHHHHH----H---HHHHHHHHHhhhhHh--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 5554443 1 334444444333443 333444448899999999999988888876553332
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005903 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (670)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s 559 (670)
. -++...|..-.-+-+.+|-.+.++|..++..
T Consensus 473 ~-~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~ 504 (1174)
T KOG0933|consen 473 Q-EEALKQRRAKLHEDIGRLKDELDRLLARLAN 504 (1174)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2 2223333333334456666666666666544
No 42
>PRK01156 chromosome segregation protein; Provisional
Probab=97.18 E-value=0.85 Score=53.93 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=15.6
Q ss_pred hHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 005903 153 CEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (670)
Q Consensus 153 ~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (670)
...-+.+.+..+.+++.+...+...+..++
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555565665565555554433
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.18 E-value=0.37 Score=49.78 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHH----hHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNH----RTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t---lKeae~----Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ 568 (670)
.+.+|++.++..+.+|+..++.....+... +.+.+. ...-....+..|..++..+..++.....+|..|.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777666666555 333332 2344556677777888888888877777777763
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=0.45 Score=58.32 Aligned_cols=170 Identities=19% Similarity=0.283 Sum_probs=109.2
Q ss_pred hhhHHhhhccccccchhHHHHHHHhHHHHHhh----------hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005903 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKA----------KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (670)
Q Consensus 289 kLq~~qf~L~as~~REsel~sKL~~~~eqL~~----------k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~ 358 (670)
++...+--++-...+.-.++++|+.+.-+.+- +..+++++-+...-+...++..+.+|+..+...+..|.
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555544443 34444444444466777788888888887777777776
Q ss_pred HhHhhHhh----hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHH
Q 005903 359 NANACFQT----SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL 434 (670)
Q Consensus 359 ~A~aklEe----sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QL 434 (670)
.-..++.. ..+++-.++-....+..++-+|.++++.|++.+..|........+..-.|++ +|
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~--------------~L 530 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKG--------------KL 530 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence 66666543 3668888888888999999999999999999999888766555444433333 22
Q ss_pred HHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhh
Q 005903 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV 486 (670)
Q Consensus 435 KEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsa 486 (670)
+. +.+..++ +-..+.+....|.++|.++..+++..+..
T Consensus 531 -------~~---~~~~~~e----~~~~l~~~k~~l~~~k~e~~~~~k~l~~~ 568 (1293)
T KOG0996|consen 531 -------LA---SSESLKE----KKTELDDLKEELPSLKQELKEKEKELPKL 568 (1293)
T ss_pred -------HH---HHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Confidence 21 2223333 55678888888998888877666554433
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.08 E-value=0.84 Score=52.02 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELere 412 (670)
++++..+++++......+... .+..|.+.++....+|.+|--.++--...-...+.........+..+.+.|.++..+
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555544433 345555555555666666666666666666667777777888888888999999999
Q ss_pred hhhhhcC---CCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH
Q 005903 413 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (670)
Q Consensus 413 lkvLesr---s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme 466 (670)
+..|..+ +-.+.+++..++.+|++...++......+..... -|+.+.+..
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~----~ysel~e~l 385 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEI----AYSELQEEL 385 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CHHHHHHHH
Confidence 9888877 2335677888888998887666654433333332 365554443
No 46
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.96 Score=52.10 Aligned_cols=306 Identities=18% Similarity=0.164 Sum_probs=156.7
Q ss_pred HhhhHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHH
Q 005903 237 LNQNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLG 312 (670)
Q Consensus 237 s~~~eeeLk~kL~~~eq----e~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~ 312 (670)
....+.+|+.+|...-+ +...|+.....+.+.+- ..+-.-|--..+..+-..+|.|.|-..--.+.+++|-.
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~ 290 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQ 290 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Confidence 34566777777754444 23334444444444443 33334444444555555555555432222223333322
Q ss_pred hHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH---HHHHHhHhhHhhhHHHHHhHHHHHHHH----HHHH
Q 005903 313 DFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE---IRLQNANACFQTSQEQLNEMDNFIESL----KESL 385 (670)
Q Consensus 313 ~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~---eQL~~A~aklEesE~EVaaLerrIelL----KE~l 385 (670)
.-...|+....+++. +++|...|+.+...|-++++.-. ++....+...++-..++..++..+..| .+.=
T Consensus 291 ~~~~~l~~l~~Eie~----kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEE----KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 222222222222211 46777777777777666665422 222222222222223333222222222 2222
Q ss_pred HhhhhhHHHHHHHHHHHhhhhHHHHHH-hhhhhc--CCCC---c-----chhh-hhHHHHHHHHHHHHHHhhhhhHhHHH
Q 005903 386 YGAESRAESAEEKVTQLTDTNLELSEE-INFLKG--NNDS---N-----TKKV-GILENQLRDLEIQLQQAKVSSEASQE 453 (670)
Q Consensus 386 ~rAEsRa~tAesKleeLSeTNdELere-lkvLes--rs~~---d-----eEK~-~~LE~QLKEa~~QLqhA~asaEas~e 453 (670)
..++.+...-+.+...+-..+..+... .....| ++-- . -..+ -.|..-+.+...++..|+. ...
T Consensus 367 l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~---~~~- 442 (581)
T KOG0995|consen 367 LEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAEN---ELE- 442 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHH---HHH-
Confidence 345556666677777777777777776 555555 2110 0 0011 0111112222212211111 111
Q ss_pred HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHH
Q 005903 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN 533 (670)
Q Consensus 454 qQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae 533 (670)
-+-+.++.+.+.|++++.-+..-+.++-.++++|-..-+++. +|..--+.-++.||.++..-+..=....++++
T Consensus 443 ---tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~e---ee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~ 516 (581)
T KOG0995|consen 443 ---TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAE---EEWKKCRKEIEKLEEELLNLKLVLNTSMKEAE 516 (581)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134567788888999999998889999899999886555444 56666777788888887777666555566666
Q ss_pred HhHHHHH----HHHHHHHHHHHHHHHHHhhh
Q 005903 534 HRTKLMM----EMVMQLATQRELIQKQVYSL 560 (670)
Q Consensus 534 ~Rak~aE----~lV~KL~~ErdrLedQL~s~ 560 (670)
.+-+-++ ++|.-..-+|..+..||..+
T Consensus 517 ~~v~s~e~el~~~~~~~~eer~ki~~ql~~~ 547 (581)
T KOG0995|consen 517 ELVKSIELELDRMVATGEEERQKIAKQLFAV 547 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654443 45555566666666666554
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.94 E-value=1.1 Score=50.87 Aligned_cols=217 Identities=18% Similarity=0.266 Sum_probs=128.2
Q ss_pred cchHHHHHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH
Q 005903 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 287 (670)
Q Consensus 208 qt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~ 287 (670)
++.+++.+|+. ++. ..-..+++.|..+....+.|+..+-....-.. ++..+-.....|.+..+...
T Consensus 197 eAeee~~~~~~--~~~-~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~-----------kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 197 EAEEERIEIAA--ERE-QDAEEWEKELEEAEEELEELKEELEAAKDLES-----------KLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 44556666653 333 34457888888888888888887744333333 44444444555665555544
Q ss_pred h-hhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Q 005903 288 G-RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (670)
Q Consensus 288 g-kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (670)
. ++.... ......+.+...|.+....|+.-...|++.. +|+..|+..+.+|..+|......+...+.+...
T Consensus 263 ~~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k----~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 263 ESKLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKAK----EEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222221 3556677788888888888888888888764 678899999999999999888888888777666
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005903 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (670)
....|++|+..+.-++.++.-+...-..+-.....+..+-.++..+....+. .....-..+..++.+++++++
T Consensus 335 a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~-------ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK-------EAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555555555333332222222222333333333333222221 122222345555566666666
Q ss_pred hhHhHHH
Q 005903 447 SSEASQE 453 (670)
Q Consensus 447 saEas~e 453 (670)
.+.+...
T Consensus 408 ~i~t~E~ 414 (522)
T PF05701_consen 408 AIKTAEE 414 (522)
T ss_pred HHHHHHH
Confidence 6666654
No 48
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.93 E-value=0.51 Score=57.46 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=15.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005903 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (670)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (670)
++.+....-+++-..+|.+.++....+|-.++
T Consensus 432 ~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 432 KEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555554444443
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.92 E-value=1.9 Score=53.36 Aligned_cols=198 Identities=20% Similarity=0.276 Sum_probs=111.5
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh--------hhhhcCCCC-------------------
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI--------NFLKGNNDS------------------- 422 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerel--------kvLesrs~~------------------- 422 (670)
.+..++...+.++.+-..|+..+..+..++..+...-+++.+-+ .||+.....
T Consensus 491 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL 570 (1201)
T PF12128_consen 491 AVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDL 570 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCC
Confidence 44455555556666666666666666666666666666666642 233222100
Q ss_pred ----------c--------------chhh---hhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 005903 423 ----------N--------------TKKV---GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (670)
Q Consensus 423 ----------d--------------eEK~---~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~K 475 (670)
+ .+-+ +.|+.++..++.+++.+..-.++... .++..-..++.++.+
T Consensus 571 ~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~-------~l~~~~~~~~~~~~~ 643 (1201)
T PF12128_consen 571 EPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEK-------QLKQINKKIEELKRE 643 (1201)
T ss_pred CCeecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 0 1000 15555565566566555533333222 222233344445555
Q ss_pred hhhhhhhhhhhhhhhhhccc--------chhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH--------HHH
Q 005903 476 VSKAESKTESVEEQCIVLSE--------DNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT--------KLM 539 (670)
Q Consensus 476 l~rAE~RaEsaEsKc~~Lse--------~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Ra--------k~a 539 (670)
+.+++...+.++.+..-|.. .+..+++...-+...+..++..+.+..+....+..+...+. ...
T Consensus 644 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~ 723 (1201)
T PF12128_consen 644 ITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQW 723 (1201)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544442221 22445555666777777777777777777777755544432 334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 540 MEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 540 E~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
......+...++.+..++-..+.+++.--..|++-
T Consensus 724 ~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~ 758 (1201)
T PF12128_consen 724 QELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQ 758 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777778888888877777777777775
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.78 E-value=0.55 Score=51.95 Aligned_cols=85 Identities=21% Similarity=0.348 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhH---hhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHH
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNAN---ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~---aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELe 410 (670)
..+..|.+.+..++.+++.....+.... .........+..+++.|...++.+.....+......+...|...+.+++
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~ 378 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA 378 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Confidence 4445555555555555555555544222 2222334455566666666666666655555555555555555555555
Q ss_pred HHhhhhhc
Q 005903 411 EEINFLKG 418 (670)
Q Consensus 411 relkvLes 418 (670)
.++..+..
T Consensus 379 ~~l~~l~~ 386 (562)
T PHA02562 379 EELAKLQD 386 (562)
T ss_pred HHHHHHHH
Confidence 55444443
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.70 E-value=0.2 Score=58.69 Aligned_cols=219 Identities=18% Similarity=0.282 Sum_probs=113.5
Q ss_pred HHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh
Q 005903 216 ILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF 295 (670)
Q Consensus 216 iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf 295 (670)
...=||.-|.+ |-..|..+|++|.||+.++...++- +| .+++++..++..-..+|.
T Consensus 419 a~~rLE~dvkk---LraeLq~~Rq~E~ELRsqis~l~~~------------Er---------~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 419 AISRLEADVKK---LRAELQSSRQSEQELRSQISSLTNN------------ER---------SLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHhhcccc------------ch---------HHHHHHHHHHHHHHHHHH
Confidence 34458888888 8899999999999999998754431 11 233344444333333333
Q ss_pred hccccc-cchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------------
Q 005903 296 NLNGSL-QRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN------------- 361 (670)
Q Consensus 296 ~L~as~-~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~------------- 361 (670)
-+.... .|+.| +.++.+|+. -+...+++-..+|.||.+-.-+-..+.
T Consensus 475 Kl~~L~~aRq~D-----Kq~l~~LEk--------------rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 475 KLQNLVQARQQD-----KQSLQQLEK--------------RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQAT 535 (697)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhc
Confidence 222211 12222 111222221 123445555566666655443322111
Q ss_pred --hhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHH-HHH
Q 005903 362 --ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR-DLE 438 (670)
Q Consensus 362 --aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLK-Ea~ 438 (670)
..-|.+.....+|++.+.-|..++...|++...++.++..+-.-.-|...+...|-+-=.+--||-..||+.|. |.+
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 11122355778888888888888888888888888888655544222222222222211112345667777765 222
Q ss_pred HHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhh
Q 005903 439 IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (670)
Q Consensus 439 ~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~r 478 (670)
+-|.==.|.. ++.+|....-..+..++.-|.|||.|+..
T Consensus 616 iKldLfsaLg-~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 616 IKLDLFSALG-DAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2122111222 23333444455566666667777776543
No 52
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.53 E-value=0.00061 Score=80.34 Aligned_cols=96 Identities=25% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 005903 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkv 415 (670)
+..|.+|.+.++.++.+....+....+..+.++.+...+...|-.|+..++.+ ...+..+...|-.|..++..
T Consensus 372 ~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~-------~e~~e~lere~k~L~~El~d 444 (859)
T PF01576_consen 372 AAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEEL-------QEQLEELERENKQLQDELED 444 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHhhcc
Confidence 34445555555555555544444444444444444444444444444444443 34444445555555556655
Q ss_pred hhcCCCCcchhhhhHHHHHHHHH
Q 005903 416 LKGNNDSNTKKVGILENQLRDLE 438 (670)
Q Consensus 416 Lesrs~~deEK~~~LE~QLKEa~ 438 (670)
|.+........+..||+..+.++
T Consensus 445 l~~q~~~~~k~v~eLek~kr~LE 467 (859)
T PF01576_consen 445 LTSQLDDAGKSVHELEKAKRRLE 467 (859)
T ss_dssp -----------------------
T ss_pred chhhhhhhccchHHHHHHHHHHH
Confidence 55543322233444444444333
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.53 E-value=2.1 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=12.7
Q ss_pred CCccchhhhchHhhhhh---hhhhccc
Q 005903 599 NNLAGATVKTSEDAVSL---MKSVQAG 622 (670)
Q Consensus 599 ~~~~~~~~k~~~~~~~~---~~~~~~~ 622 (670)
|.+++=.+-.-.|+..| |++.+-+
T Consensus 520 n~lnaFiv~sh~D~~~Lr~i~~~~~~~ 546 (1074)
T KOG0250|consen 520 NLLNAFIVTSHKDARILRAIMRRLKIP 546 (1074)
T ss_pred HhhhhheeCCHhhHHHHHHHHHHcCCC
Confidence 44555555555666554 5555433
No 54
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.46 E-value=0.00073 Score=77.83 Aligned_cols=148 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc---chhhhhH----------
Q 005903 370 QLNEMDNFIESLKESLYGAESRA------ESAEEKVTQLTDTNLELSEEINFLKGNNDSN---TKKVGIL---------- 430 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa------~tAesKleeLSeTNdELerelkvLesrs~~d---eEK~~~L---------- 430 (670)
.++..+..|..|+.++...+..+ ..=...+..|..+|.++..+++.|+.....- .+....|
T Consensus 224 ~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~ 303 (722)
T PF05557_consen 224 SLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEEL 303 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445677777776666655543 1123467788899999999999888863211 1222222
Q ss_pred HHHHHHHHHHHHHhh-------hhhHhH------------------------HHHHhhhHHHHHhHHHHHHHHhhhhhhh
Q 005903 431 ENQLRDLEIQLQQAK-------VSSEAS------------------------QEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (670)
Q Consensus 431 E~QLKEa~~QLqhA~-------asaEas------------------------~eqQ~mkyseisdme~vIEdLk~Kl~rA 479 (670)
+.++-++++|.++-. ....+. ..+.+-.-..++.+...+.+|..++..+
T Consensus 304 ~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l 383 (722)
T PF05557_consen 304 EEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQL 383 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 233333332222221 111110 0122224456777778888888888888
Q ss_pred hhhhhhhhhhhhhcccchhhHH-------HHHHHHHhhHHHHHHH
Q 005903 480 ESKTESVEEQCIVLSEDNFELK-------NKQSFMRDKIKILESS 517 (670)
Q Consensus 480 E~RaEsaEsKc~~Lse~N~ELe-------EEL~~l~~~lKsLE~s 517 (670)
...++.++.+..-+...+..|+ .|..+||.-|++.+.-
T Consensus 384 ~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 384 LKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8887777777777776666665 4555666666665443
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.44 E-value=1.1 Score=52.91 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~ 558 (670)
.|--.|+.++.+---||.+|..-+--|..- +=|+--.-+.+...+.+=.+||..|...|.
T Consensus 591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888888888888888877777766 444444466666666666666666665443
No 56
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.36 E-value=3 Score=48.60 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=107.4
Q ss_pred cchHHHHHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhh------
Q 005903 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG------ 281 (670)
Q Consensus 208 qt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g------ 281 (670)
++++-.|..-+=|=|+--+|.|. .+...++-|-+--+||+++.+|.---=+|-+
T Consensus 55 ~~pe~k~k~~~~llK~yQ~EiD~--------------------LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~ 114 (629)
T KOG0963|consen 55 NTPEDKLKMVNPLLKSYQSEIDN--------------------LTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLN 114 (629)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhh
Confidence 35566666666666666666553 3556778888889999999999765444433
Q ss_pred -hhH------HHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh------hHHH---HHhhcC---C----hhHHHH
Q 005903 282 -ISK------EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK------DMVL---QKLEST---K----NSEVLT 338 (670)
Q Consensus 282 -~sk------el~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k------~~~L---ekl~~s---~----esEv~s 338 (670)
..+ .+..+|......|.+..-.+..++ +|+...-+++++ ..+. +++... + -.+-..
T Consensus 115 k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~-~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~ 193 (629)
T KOG0963|consen 115 KQQKASEENEELKEELEEVNNELADLKTQQVTVR-NLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQN 193 (629)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 333333333332222221111111 111111111111 0000 000000 0 244556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 005903 339 MKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (670)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelk 414 (670)
+++++..+|+..+..+..+..+..++... ..+++...-.|.++=.++.+|..|+-.++..|+.|.+....-+...+
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 77777777777777777666666666543 55688888888888899999999999999999888877666655544
No 57
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.30 E-value=2.6 Score=52.36 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHH
Q 005903 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQ 433 (670)
Q Consensus 375 errIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~Q 433 (670)
.+....+.-.+..++--+.+..++|..+..++.++...+..++..+..-.+++..|+..
T Consensus 538 ~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~ 596 (1317)
T KOG0612|consen 538 LEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEES 596 (1317)
T ss_pred HhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 44455555666666666777778888888888888888887777555556777777655
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.16 E-value=1.1 Score=51.67 Aligned_cols=302 Identities=15% Similarity=0.166 Sum_probs=157.7
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHHhh
Q 005903 146 MEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLA 225 (670)
Q Consensus 146 ~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla 225 (670)
+.++|.+|=+..+++..|=..+..+.--|+.++.. +. ++++...
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~------~t----------s~ik~~y-------------------- 90 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR------ET----------SGIKAKY-------------------- 90 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CC----------cchhHHh--------------------
Confidence 36677777777777777777766666666655421 11 2222222
Q ss_pred hhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchh
Q 005903 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES 305 (670)
Q Consensus 226 ~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs 305 (670)
|.-|..++...++-.-..+-++.+...+.+....+-.||.+++.....-+.......++|..++.-++=.-.|=.
T Consensus 91 -----e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 91 -----EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 222334455555555555566666677777777777777777777777777766666666666665554433333
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHH---HHHHHHHHHHHHHHHHH---------------------------HH
Q 005903 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEV---LTMKEKVKSLEEQLKES---------------------------EI 355 (670)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s~esEv---~sLqkKvksLE~qLdes---------------------------~e 355 (670)
.+.+.++....+...-...|..++.-.+.|. ..++.+++.|-.+|+-. .-
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 3333332222222222333333332222222 23333333333333222 22
Q ss_pred HHHHhHhhHhhh-HH-------HH-HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh
Q 005903 356 RLQNANACFQTS-QE-------QL-NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (670)
Q Consensus 356 QL~~A~aklEes-E~-------EV-aaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK 426 (670)
+|+.|-..+-+- +. ++ ....++|+.++....++=.-...+.+.+..+--..+.|...+..|++++..-+.+
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~ 325 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKR 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHH
Confidence 222222111110 11 11 1455666666655555555555566666666667777777777777776655555
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHH
Q 005903 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 506 (670)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~ 506 (670)
++-|+.||.+-. .+--.++.++.+-|..+...+...-.. .-.|=+++.-|.-||+.
T Consensus 326 I~dL~~ql~e~~-----------------r~~e~~L~~kd~~i~~mReec~~l~~E-------lq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 326 IEDLEYQLDEDQ-----------------RSFEQALNDKDAEIAKMREECQQLSVE-------LQKLLDTKISLDAEIAA 381 (546)
T ss_pred HHHHHhhhhhhh-----------------hhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHhhchHhHHHhHHHH
Confidence 555555554422 112235666666666555555444333 34556677778888888
Q ss_pred HHhhHH
Q 005903 507 MRDKIK 512 (670)
Q Consensus 507 l~~~lK 512 (670)
||.=|.
T Consensus 382 YRkLLe 387 (546)
T KOG0977|consen 382 YRKLLE 387 (546)
T ss_pred HHHHhc
Confidence 875443
No 59
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=4.2 Score=48.20 Aligned_cols=224 Identities=25% Similarity=0.277 Sum_probs=118.5
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChh--HHHHHHHHHHHHHHH
Q 005903 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNS--EVLTMKEKVKSLEEQ 349 (670)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~es--Ev~sLqkKvksLE~q 349 (670)
+.=..+.++|-+++-.++|+ .|...-.+.+.++-..+.+.+-+.-. -.-....++..++.+
T Consensus 376 ~~~~le~~k~~~ke~~~~~~-----------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~ 438 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQ-----------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEEL 438 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 33445777888888888777 45555555665555555444433000 000111233344444
Q ss_pred HHHHHHHHHHhHhhHhh---hHHHHHhHHHHHHHHHHHHHhhhhhHHH-------HHHHHHHHhhhhHHHHHHhhhhhcC
Q 005903 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAES-------AEEKVTQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKE~l~rAEsRa~t-------AesKleeLSeTNdELerelkvLesr 419 (670)
..+.+-.....++-+.+ .-+...+|+.+|.-|=.++.+++-+.=- +-.+...|.+.-+.++..+.-|.+.
T Consensus 439 ~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 439 SEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333322222 1334445666666666666666655433 3344444444444444444444444
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhh--hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccch
Q 005903 420 NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM--LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN 497 (670)
Q Consensus 420 s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m--kyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N 497 (670)
...-..++.-||.|++-.- =....-+.+--..+|+| .-.++.+...-.++||.++++.+...+..+.+|.
T Consensus 519 ~~~~~~~i~~leeq~~~lt--~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~------ 590 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLT--SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA------ 590 (698)
T ss_pred HHHHHHHHHHHHHHHHHhh--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3323445555555555432 11112222222333332 2235666667778888888888888888888888
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Q 005903 498 FELKNKQSFMRDKIKILESSLNRA 521 (670)
Q Consensus 498 ~ELeEEL~~l~~~lKsLE~sl~kA 521 (670)
++..||...+-+.+-||.-+.+.
T Consensus 591 -e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 591 -ELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777776655544
No 60
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.09 E-value=3.7 Score=47.01 Aligned_cols=150 Identities=22% Similarity=0.273 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELere 412 (670)
++++..+++++...-..|+.. .+..|...++....+|..|=..++-=-..-..-+.........+..+.+.|.++..+
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444322 233343444433444443333333323333345667777888888999999999999
Q ss_pred hhhhhcC---CCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 005903 413 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (670)
Q Consensus 413 lkvLesr---s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsK 489 (670)
+..+..+ +..+.+++..+++|++....+.........+... -|+.+.....-+. ..+...+..-...-..
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~----~yS~i~~~l~~~~---~~l~~ie~~q~~~~~~ 401 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQV----PYSEIQEELEEIE---EQLEEIEEEQEEINES 401 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 9999887 2234678889999998888777666655555444 6777666554333 4444444443333333
Q ss_pred hh
Q 005903 490 CI 491 (670)
Q Consensus 490 c~ 491 (670)
+.
T Consensus 402 l~ 403 (560)
T PF06160_consen 402 LQ 403 (560)
T ss_pred HH
Confidence 44
No 61
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.90 E-value=2.5 Score=43.47 Aligned_cols=197 Identities=20% Similarity=0.245 Sum_probs=114.6
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHH
Q 005903 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (670)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (670)
.+|+.+.....-.+.|..+...+-.-...+...++..+.|-..-.-.+.-+.....+++.++...-- ++....-.+|.
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~ 126 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHH
Confidence 3555666666666777777777777777788888888887776666666666666677766654433 66667788899
Q ss_pred HHHHhHHHHHhhh-hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-----------hhhHHHHHhHHH
Q 005903 309 SKLGDFIEQLKAK-DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF-----------QTSQEQLNEMDN 376 (670)
Q Consensus 309 sKL~~~~eqL~~k-~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~akl-----------EesE~EVaaLer 376 (670)
.+|+.+..=|..- ...+... ....+.+++.++.-|..++.-+ +.....++..+.
T Consensus 127 ~~l~ea~~mL~emr~r~f~~~--------------~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~ 192 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDFTPQ--------------RQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNA 192 (264)
T ss_pred HHHHHHHHHHHHHHhccchhH--------------HHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHH
Confidence 8888887655531 1112222 2222333333333222222221 223456667777
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhh
Q 005903 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (670)
Q Consensus 377 rIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (670)
++.+|.+-+.+|......|...+..-..+-.++++....++.. .......|.+++.-|.+|....
T Consensus 193 kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~-------~~~~~~~L~~a~~~L~~a~~ll 257 (264)
T PF06008_consen 193 KLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQ-------QNEVSETLKEAEDLLDQANDLL 257 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666555555555555554444442 3444555555554444444333
No 62
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.86 E-value=0.0022 Score=75.82 Aligned_cols=318 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHH
Q 005903 231 EKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSK 310 (670)
Q Consensus 231 EkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sK 310 (670)
|..|.+.+..-.+..-.++-+...+..|+.....+...+-++++..-.|.-.-..+..-|.-++-.|. .|+-.+..
T Consensus 186 E~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~le----eEtr~k~~ 261 (859)
T PF01576_consen 186 EAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLE----EETRAKQA 261 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----hHhhhhhh
Confidence 33444444444444444444445555555555555555555555544443333333333333322222 22222222
Q ss_pred HHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh--------HHHHHhHHHHHHHHH
Q 005903 311 LGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS--------QEQLNEMDNFIESLK 382 (670)
Q Consensus 311 L~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes--------E~EVaaLerrIelLK 382 (670)
|.....+++ ..++.|...-++| .+-...++.++...+.++..++.+++.- +.-=..|.+.+.++.
T Consensus 262 L~~~l~~le---~e~~~L~eqleeE----~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~ 334 (859)
T PF01576_consen 262 LEKQLRQLE---HELEQLREQLEEE----EEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQ 334 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHH---HHHHHHHHHHhhh----hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222222222 1222222211111 1222334555555555555555555442 111124445555555
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHH
Q 005903 383 ESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAI 462 (670)
Q Consensus 383 E~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei 462 (670)
+.+..+..+..+.+-.+.-|+.-...+...+.-..+.....+.|...++.+|-+.+..+....+--++++..-..+..++
T Consensus 335 e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~ 414 (859)
T PF01576_consen 335 EQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETEL 414 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555555444444444444444444444444344433333444555555555554333333333333333222233333
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhhhhhh--------------hhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 005903 463 WDMETLIEDLKSKVSKAESKTESVEEQC--------------IVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (670)
Q Consensus 463 sdme~vIEdLk~Kl~rAE~RaEsaEsKc--------------~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t 528 (670)
..+..-.+++...+..++..-......+ .-|-.....|+.++.-+..-|..+|..++.+.+.+...
T Consensus 415 ~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl 494 (859)
T PF01576_consen 415 FKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRL 494 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333322222111111111 11111222333444444444444444444433333222
Q ss_pred -----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005903 529 -----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (670)
Q Consensus 529 -----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s 559 (670)
-+++..+-+-++.+-..++..++.|+.+|-.
T Consensus 495 ~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~ 536 (859)
T PF01576_consen 495 QVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEE 536 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHH
Confidence 3455555556666666666666666666544
No 63
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=1.8 Score=51.82 Aligned_cols=106 Identities=17% Similarity=0.107 Sum_probs=63.8
Q ss_pred hhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005903 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQN 359 (670)
Q Consensus 280 ~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~ 359 (670)
.-+++.....++.+++++.|.+.+= ..-++++.+...+++-.++.=++++.....-..++.+|++....||..
T Consensus 645 ~~~~~k~~e~l~~~~~kyK~lI~~l-------D~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 645 TQLAEKYHEELDDIQQKYKGLIREL-------DYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467778889999999998876653 333444444444444444433567777777777888888888887764
Q ss_pred hHhhHhhh----------HHHHHhHHHHHHHHHHHHHhhhhhH
Q 005903 360 ANACFQTS----------QEQLNEMDNFIESLKESLYGAESRA 392 (670)
Q Consensus 360 A~aklEes----------E~EVaaLerrIelLKE~l~rAEsRa 392 (670)
+..+.... ..+++++.-.++.++-+...+...+
T Consensus 718 ~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 718 ISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred cccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333221 3355555555555554444444443
No 64
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.64 Score=55.38 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=65.1
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh---HHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHh
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN---LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTN---dELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (670)
++++......+..|++.+.--+.++..+-++.-.+++-+ --.+++++.++..+-.-..+.+.+.++|.+-+.-.+.-
T Consensus 691 ~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~ 770 (970)
T KOG0946|consen 691 EEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESF 770 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 556777777777777777777777776655554444422 22233344333332222335677778884444445556
Q ss_pred hhhhHhHHHHHhhhHHHHHhHHHHHHHHhh
Q 005903 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKS 474 (670)
Q Consensus 445 ~asaEas~eqQ~mkyseisdme~vIEdLk~ 474 (670)
++.+..++-.|+-.-..+.|.+.|+|+++.
T Consensus 771 k~~~~~a~~~~~~~~~~~~~qeqv~El~~~ 800 (970)
T KOG0946|consen 771 KATQRSAELSQGSLNDNLGDQEQVIELLKN 800 (970)
T ss_pred HHHHhhhhcccchhhhhhhhHHHHHHHHHh
Confidence 666666666666677788899999997554
No 65
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=11 Score=46.78 Aligned_cols=222 Identities=18% Similarity=0.234 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerel 413 (670)
.++.+-+-|+..||.+++-+..++.+.+-+++..+.++.-++..|.....+++.-+-++++.+.....|.+--.+.+..+
T Consensus 676 ~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 676 KEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38889999999999999999999999988887777666666666665555555444444444433333333322222210
Q ss_pred --hhhhcCCCC----c--------chhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhh
Q 005903 414 --NFLKGNNDS----N--------TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (670)
Q Consensus 414 --kvLesrs~~----d--------eEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rA 479 (670)
.|-+.-+.. + ..|.-.+++|+--++.||+--+. +-.-..+.+++.-|+++...+..-
T Consensus 756 f~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~---------~d~~~~ve~~~~~v~~~~~~~~~~ 826 (1141)
T KOG0018|consen 756 FKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ---------KDTQRRVERWERSVEDLEKEIEGL 826 (1141)
T ss_pred HHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec---------ccHHHHHHHHHHHHHHHHHhHHhh
Confidence 011110110 0 12223333444333333332222 222334556666666666666555
Q ss_pred hhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005903 480 ESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (670)
Q Consensus 480 E~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s 559 (670)
+.+-+.++..+. +. +++.- ++ .+..+.+..-+++...-..-+..-.++|..++..++.+|-.
T Consensus 827 ~~~e~~~~k~i~-------e~-~~~e~-k~---------k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~ 888 (1141)
T KOG0018|consen 827 KKDEEAAEKIIA-------EI-EELEK-KN---------KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIER 888 (1141)
T ss_pred HHHHHHHHHHHh-------hH-HHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 555555555555 33 33222 11 22222222224444444455556678899999999999999
Q ss_pred hHHhhHHHHHHHhhccCCCCcee
Q 005903 560 LTSENKLLVEKLQYSGKSSSATM 582 (670)
Q Consensus 560 ~keenK~L~ekLd~T~k~~~~tm 582 (670)
...+...|-..|+--....|+..
T Consensus 889 ~~~er~~lL~~ckl~~I~vPl~~ 911 (1141)
T KOG0018|consen 889 KESERHNLLSKCKLEDIEVPLSS 911 (1141)
T ss_pred HHHHHHHHHHHhhhccccccccC
Confidence 99999999888887778888763
No 66
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=95.21 E-value=1.8 Score=46.39 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=87.7
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHH
Q 005903 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQ 545 (670)
Q Consensus 469 IEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~K 545 (670)
|+-++.++..++.+.+.++.+.. +...+|.-+..++..|+...+.+..++... ++....|-.-+.+++.-
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~-------~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLA-------EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 44566788888888888888888 889999999999999999999888877776 67778899999999999
Q ss_pred HHHHHHHHHHHHhhhHHhhHHHHHHHhhccCCCCceecc
Q 005903 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYN 584 (670)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd~T~k~~~~tm~~ 584 (670)
|..|+.|=..++..+......|...+==. +.|..|.
T Consensus 289 L~~E~~RW~~~~~~l~~~~~~l~GD~lla---aa~isY~ 324 (344)
T PF12777_consen 289 LSGEKERWSEQIEELEEQLKNLVGDSLLA---AAFISYL 324 (344)
T ss_dssp CHHHHHCCHCHHHHHHHHHHHHHHHHHHH---HHHHHCC
T ss_pred hcchhhhHHHHHHHHHHHhcccHHHHHHH---HHHHHHc
Confidence 99999999999999998888876655433 4454444
No 67
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.11 E-value=8.8 Score=44.65 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh-hccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCCh
Q 005903 255 AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF-NLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (670)
Q Consensus 255 ~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf-~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~e 333 (670)
++||+ -+..-|.+|+.++--..-+....+.-+.++-...+ .+ ..++......++++. +.++..+
T Consensus 195 k~f~d-y~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~i-------e~l~~~n~~l~e~i~----e~ek~~~--- 259 (581)
T KOG0995|consen 195 KLFFD-YTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEI-------EDLKKTNRELEEMIN----EREKDPG--- 259 (581)
T ss_pred HHHHH-HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHhcCcc---
Confidence 45554 55566777776543366666666655555554333 22 235555555566655 2222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRL 357 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL 357 (670)
=..+|.+|...|.+++.+++.-.
T Consensus 260 -~~eslre~~~~L~~D~nK~~~y~ 282 (581)
T KOG0995|consen 260 -KEESLREKKARLQDDVNKFQAYV 282 (581)
T ss_pred -hHHHHHHHHHHHHhHHHHHHHHH
Confidence 22355666666666665555443
No 68
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.03 E-value=5.1 Score=41.51 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQ 556 (670)
.|.-+|..++++..+||..+......=..-..+....-.-.+.-+.++..+..+...+
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 6677777777777777777766655555444444444444444445554444444433
No 69
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.02 E-value=8.6 Score=44.07 Aligned_cols=241 Identities=17% Similarity=0.207 Sum_probs=117.1
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhh-hhHHHHHhhcCChhHHHHHHHHHHHH
Q 005903 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLESTKNSEVLTMKEKVKSL 346 (670)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~-k~~~Lekl~~s~esEv~sLqkKvksL 346 (670)
||+.|-+..--+......+-.+++.+.-.|+.....|.+-+.....+.+.-.. |+..|.+=++- -+=+..|.+++..+
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~-G~a~~~le~~l~~~ 177 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF-GPALDELEKQLENL 177 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHH
Confidence 56666666666666666666666666666665555555555444444444433 22222222221 23345677777777
Q ss_pred HHHHHHHHHHH-----HHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 005903 347 EEQLKESEIRL-----QNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (670)
Q Consensus 347 E~qLdes~eQL-----~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~ 421 (670)
|.+|..+..-. ..|..-+.....++..|+..++.+-.=+...+.-. =.--++|..+..-|...+.
T Consensus 178 e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~----------P~ql~el~~gy~~m~~~gy 247 (569)
T PRK04778 178 EEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTEL----------PDQLQELKAGYRELVEEGY 247 (569)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHcCC
Confidence 77777776632 23444444445566666666666554444433322 1222344444444444432
Q ss_pred C-----cchhhhhHHHHHHHHH-----HHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005903 422 S-----NTKKVGILENQLRDLE-----IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (670)
Q Consensus 422 ~-----deEK~~~LE~QLKEa~-----~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~ 491 (670)
. -+.++..+..++.++. ..|..|....+....+-.-+|+.+.+--.... .++.........+.
T Consensus 248 ~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~-------~vek~~~~l~~~l~ 320 (569)
T PRK04778 248 HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARK-------YVEKNSDTLPDFLE 320 (569)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHH
Confidence 1 1455666666666632 22333333333333322335554433322211 12222222222233
Q ss_pred hcccchhhHHHHHHHHHhh----------HHHHHHHHHHHhHHHH
Q 005903 492 VLSEDNFELKNKQSFMRDK----------IKILESSLNRANIEKA 526 (670)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~----------lKsLE~sl~kA~q~ke 526 (670)
=+.+.|.+|..|+..|..+ ...++..++....+-.
T Consensus 321 ~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 321 HAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 3334444777777776666 5555555555444433
No 70
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.98 E-value=14 Score=46.33 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhc
Q 005903 258 MEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNL 297 (670)
Q Consensus 258 lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L 297 (670)
+--....+.+||.+.+|-...|......+...|..+|--.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~ 531 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKN 531 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778898888888888877777777777665443
No 71
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.80 E-value=7.3 Score=42.18 Aligned_cols=153 Identities=25% Similarity=0.301 Sum_probs=91.6
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhH
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (670)
+|+.+.-.++-|-..+++||+++.+.+.++-... |-|.+.-=+| |
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~tr---daLrEKtL~l--------------------------------E 182 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTR---DALREKTLAL--------------------------------E 182 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--------------------------------H
Confidence 6777888888888888888888777766544332 2222221112 1
Q ss_pred hHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhH
Q 005903 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASA 529 (670)
Q Consensus 450 as~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tl 529 (670)
..++.-+-...-++.|+.+--.=++|+.+.-.+-+++|.++.=|--.|+ -++..|.+.... -..|+.++
T Consensus 183 ~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~-------LLrQQLddA~~K----~~~kek~V 251 (305)
T PF14915_consen 183 SVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENM-------LLRQQLDDAHNK----ADNKEKTV 251 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHH
Confidence 1111111112334444444444458999999999999999984444444 444433322111 11244455
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
-+|..+ +-++|.+|+.+.+ .|...+.++||.|..+|...
T Consensus 252 iniQ~~---f~d~~~~L~ae~e---kq~lllEErNKeL~ne~n~L 290 (305)
T PF14915_consen 252 INIQDQ---FQDIVKKLQAESE---KQVLLLEERNKELINECNHL 290 (305)
T ss_pred hhHHHH---HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHH
Confidence 555544 5678888877764 57888889999998888765
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.80 E-value=11 Score=44.21 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=78.1
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHhhHHH--HHH--HHHHHhHHHHhhHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Q 005903 485 SVEEQCIVLSEDNFELKNKQSFMRDKIKI--LES--SLNRANIEKAASAKEVNHR---TKLMMEMVMQLATQRELIQKQV 557 (670)
Q Consensus 485 saEsKc~~Lse~N~ELeEEL~~l~~~lKs--LE~--sl~kA~q~ke~tlKeae~R---ak~aE~lV~KL~~ErdrLedQL 557 (670)
.+...+--++..|-+|...|+.+...-.. ++. ..+.+..-.-..-.|.+.| ..|+...+.++..|+++|..+|
T Consensus 290 ~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL 369 (617)
T PF15070_consen 290 EAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQL 369 (617)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444666677777777777765444321 110 0000111111113444444 6789999999999999999999
Q ss_pred hhhHHhhHHHHHHHhhccCCCCceecccCCCCCCccccccCCCccchhhhchHhhhhhhhhh
Q 005903 558 YSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSV 619 (670)
Q Consensus 558 ~s~keenK~L~ekLd~T~k~~~~tm~~~gd~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 619 (670)
-..+.....+...+-...+++....-.+|.+++ .+-.-.+..+..+-.|+=.--|.+|+-+
T Consensus 370 ~eqk~~~q~L~h~va~~q~e~e~~a~~~~~~~d-sV~~E~h~aLq~amekLq~~f~~~~~e~ 430 (617)
T PF15070_consen 370 EEQKVQCQHLAHQVASAQKEPEAEAPAPGTGGD-SVPGETHQALQEAMEKLQSRFMDLMEEK 430 (617)
T ss_pred HHHHHHHHHhhhccccccccccccccCcccCCC-CCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777666666655544433333 2212234445556667655556666543
No 73
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.60 E-value=13 Score=44.22 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=57.5
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh----hhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHh
Q 005903 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT----DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (670)
Q Consensus 369 ~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLS----eTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (670)
..|..++..|..|++-+.--..|+..-+..+..++ +-+.+|++..++-.+. |-+|.+.+
T Consensus 349 ~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~k-----------e~eleeL~------ 411 (786)
T PF05483_consen 349 FVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNK-----------EVELEELK------ 411 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhh-----------HHHHHHHH------
Confidence 37779999999999999988999998888876554 4555666555533332 44455554
Q ss_pred hhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 005903 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (670)
Q Consensus 445 ~asaEas~eqQ~mkyseisdme~vIEdLk~K 475 (670)
..-+..+. ++++-.+.+.+.|.|++.
T Consensus 412 -~~L~e~qk----ll~ekk~~eki~E~lq~~ 437 (786)
T PF05483_consen 412 -KILAEKQK----LLDEKKQFEKIAEELQGT 437 (786)
T ss_pred -HHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33222223 677788888888877765
No 74
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.43 E-value=2.8 Score=40.68 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=78.7
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005903 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (670)
Q Consensus 326 ekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeT 405 (670)
++|..+ .++.-+|.++|-+||.+|..++..+..+....|.+..++.+|+..|..+-..+.+.+.-+.+..+.-..+.+.
T Consensus 10 ~kLK~~-~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 10 EKLKES-ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHH-HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 6778899999999999999999999999999898999999999888888888888888888888888888777
Q ss_pred hHHHHHHhhhhhcC
Q 005903 406 NLELSEEINFLKGN 419 (670)
Q Consensus 406 NdELerelkvLesr 419 (670)
-.+....+..|+++
T Consensus 89 lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 89 LQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777776
No 75
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.37 E-value=13 Score=43.14 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 005903 142 IMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (670)
Q Consensus 142 ~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~ 181 (670)
.+++++.++.+....+....+.+..++.+....++-+..+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665555555443
No 76
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.33 E-value=10 Score=43.94 Aligned_cols=86 Identities=19% Similarity=0.287 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHh--------------hhhhHHHHHHHH
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG--------------AESRAESAEEKV 399 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~r--------------AEsRa~tAesKl 399 (670)
+|+..|.+|+...++.+....+.+.+....+-..+++++.+.++|..+++++.+ +-..++....--
T Consensus 120 ~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 120 EELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 444455555444444444444444433333333455666666666666555443 333333333333
Q ss_pred HHHhhhhHHHHHHhhhhhcC
Q 005903 400 TQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 400 eeLSeTNdELerelkvLesr 419 (670)
..+.-....|..++.|+..-
T Consensus 200 ~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHhHHHHHHHHHHHHHhc
Confidence 44556667777777777754
No 77
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.30 E-value=7.3 Score=40.00 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=106.4
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhH
Q 005903 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (670)
Q Consensus 372 aaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas 451 (670)
.+|...+..++.++..+|.+......+|..+...|.+...-+.-++..-. .-+...+++-..++.+++. +....
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~---~~i~e~~~~~~~~~~~i~~---~~~er 78 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIA---QMIEEKQKQKELSEAEIQK---LLKER 78 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHHH---HHhhH
Confidence 35666677777777777777777777777777777666665555544311 1111112221111111111 11111
Q ss_pred HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH----HHHHHHHhHHHHh
Q 005903 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL----ESSLNRANIEKAA 527 (670)
Q Consensus 452 ~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsL----E~sl~kA~q~ke~ 527 (670)
+. .+..+.-++.-.-||-.++++...-++.+-..=-.|-.+--+...-+.-.+.|...| +.+++.||..=+.
T Consensus 79 dq----~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~ 154 (207)
T PF05010_consen 79 DQ----AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQ 154 (207)
T ss_pred HH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 344444444444444444444443332222211111122234444444444444444 4567777777777
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
.-+..........-.+.+.+..+.-|+.+|-.-+.+|.-|..=||..
T Consensus 155 v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 155 VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888888888888888888888988888888864
No 78
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.29 E-value=17 Score=44.17 Aligned_cols=277 Identities=18% Similarity=0.206 Sum_probs=135.1
Q ss_pred HHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHH
Q 005903 230 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 309 (670)
Q Consensus 230 LEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s 309 (670)
||-.+-+-..-...|..++.-.|-++..|-++...+-.-+-+++--+|-+.. |+...+-.|+|-..-=--+-.
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~s-------rlh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNS-------RLHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHhhhhHHHHHHHH
Confidence 4555555555566777777777777777777766665555555544443333 233223333322110000111
Q ss_pred HHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh---h---HHHHHhHHHHHHHHHH
Q 005903 310 KLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT---S---QEQLNEMDNFIESLKE 383 (670)
Q Consensus 310 KL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe---s---E~EVaaLerrIelLKE 383 (670)
-|.+.-+.|...+..++.+.+...++...+..|++.+-+.+..-....+.....-+. . +-++++--....-++-
T Consensus 170 ~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk 249 (1265)
T KOG0976|consen 170 DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRK 249 (1265)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhh
Confidence 233333334444444443333334555555555555544444333221111000000 0 1122233333333444
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHH--HHHhhhHHH
Q 005903 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ--EQQSMLYSA 461 (670)
Q Consensus 384 ~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~--eqQ~mkyse 461 (670)
..++-+++-. .+.-.|+++++.+..|+-..+.-.+-...-|-.+|+.+.-|+.-+.+...++ -.|+-+|-.
T Consensus 250 ~~s~i~E~d~-------~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh 322 (1265)
T KOG0976|consen 250 TCSMIEEQDM-------DLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLH 322 (1265)
T ss_pred hhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4444444333 3444555555554444443322222334445555555555554444443333 346778887
Q ss_pred HHhHH--HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 005903 462 IWDME--TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (670)
Q Consensus 462 isdme--~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~ 527 (670)
...|. .-+-|++-.|..|.-.+|++-.|.- +|+.+=....-++-++...+.-....+-+
T Consensus 323 ~enmkltrqkadirc~LlEarrk~egfddk~~-------eLEKkrd~al~dvr~i~e~k~nve~elqs 383 (1265)
T KOG0976|consen 323 LENMKLTRQKADIRCALLEARRKAEGFDDKLN-------ELEKKRDMALMDVRSIQEKKENVEEELQS 383 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 77777 3455667777777777777777777 77777777766666665555444333333
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.15 E-value=6.7 Score=41.17 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005903 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (670)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKl 399 (670)
+...+..+.+...+.|+.....+..++..+++.+.++.++++.+-.++.++..+.+|...++.++
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666777777777777777777777777777777777777777777777776665
No 80
>PRK11281 hypothetical protein; Provisional
Probab=94.13 E-value=2.9 Score=51.81 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=23.0
Q ss_pred hcccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 005903 492 VLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (670)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA 521 (670)
-+.+.|.+|.++|-....++..+-....++
T Consensus 282 ~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~ 311 (1113)
T PRK11281 282 QELEINLQLSQRLLKATEKLNTLTQQNLRV 311 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355779999999999999988876555443
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.13 E-value=8.3 Score=40.48 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 005903 532 VNHRTKLMMEMVMQLATQRELIQKQVY 558 (670)
Q Consensus 532 ae~Rak~aE~lV~KL~~ErdrLedQL~ 558 (670)
++.....+.+-+..+..+++.|...+-
T Consensus 147 ~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 147 LEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444455555566666666655543
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.10 E-value=0.78 Score=46.60 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=77.4
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh------HHHHHHh
Q 005903 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS------AKEVNHR 535 (670)
Q Consensus 462 isdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t------lKeae~R 535 (670)
.+|+..-|+||..--.|-...--..-..+....+.|..|-+|+.-++..+++++-.++.|.-.+++- ++.++--
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE 82 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888776655655555566666778889999999999999999999998888885555543 4444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
..-+-.--.++.+|-..|..+|.++-++|..+....+.+
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~l 121 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGL 121 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 444444445555666666666666666666665555544
No 83
>PRK09039 hypothetical protein; Validated
Probab=93.95 E-value=8.3 Score=41.82 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=12.9
Q ss_pred CccchhhhchHhhhhhhhhhc
Q 005903 600 NLAGATVKTSEDAVSLMKSVQ 620 (670)
Q Consensus 600 ~~~~~~~k~~~~~~~~~~~~~ 620 (670)
.++...........+.++.+.
T Consensus 234 ~L~~~~~~~L~~ia~~l~~~~ 254 (343)
T PRK09039 234 ELNPEGQAEIAKLAAALIELA 254 (343)
T ss_pred ccCHHHHHHHHHHHHHHHHhh
Confidence 345555666666667777663
No 84
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.91 E-value=0.7 Score=54.51 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=69.9
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 005903 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (670)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak 537 (670)
+|+.++++-..+. . |++.=+..+..+.-.||+...+.-+||.-++.+++.|.++++++..+.+.--..++.+++
T Consensus 601 R~e~a~d~Qe~L~---~---R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~ 674 (717)
T PF10168_consen 601 RYEEAKDKQEKLM---K---RVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKS 674 (717)
T ss_pred HHHHHHHHHHHHH---H---HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5666666554444 2 222222333445566888888999999999999999999999987776654334443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhccCCCC
Q 005903 538 LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSS 579 (670)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~k~~~ 579 (670)
.-...+.==....+++.+-|....++.+.+..++++.+++.+
T Consensus 675 ~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~ 716 (717)
T PF10168_consen 675 PKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIVN 716 (717)
T ss_pred ccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 322222222344555555555566666666666665555443
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.90 E-value=4.8 Score=44.42 Aligned_cols=33 Identities=6% Similarity=0.099 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhcc
Q 005903 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (670)
Q Consensus 543 V~KL~~ErdrLedQL~s~keenK~L~ekLd~T~ 575 (670)
....+.+..+|+.+......-|..+...+++++
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888888888888887764
No 86
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.76 E-value=9.2 Score=40.45 Aligned_cols=39 Identities=13% Similarity=-0.055 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhHHhhHHHHHHHhhccCCCCceecc
Q 005903 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYN 584 (670)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd~T~k~~~~tm~~ 584 (670)
+..++..++.++.....+...+...++.+..-+|+.++=
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V 282 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence 334556666667777777777777888888889988764
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.73 E-value=18 Score=42.41 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHH----hHHHHhh---HHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHH
Q 005903 499 ELKNKQSFMRDKIKILESSLNRA----NIEKAAS---AKE-----VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA----~q~ke~t---lKe-----ae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (670)
..-++++.++..++.++.-+..- .+-+..| =|+ --.|.--|-..|.|-..+++++-.+.-.+.++.+.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~ 523 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777776655433322 2222222 112 12233344556777888899999999999999999
Q ss_pred HHHHHhhc
Q 005903 567 LVEKLQYS 574 (670)
Q Consensus 567 L~ekLd~T 574 (670)
+.++|+.|
T Consensus 524 l~gkL~Rt 531 (594)
T PF05667_consen 524 LTGKLDRT 531 (594)
T ss_pred HHHHHHhH
Confidence 99999986
No 88
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.67 E-value=13 Score=40.49 Aligned_cols=151 Identities=22% Similarity=0.329 Sum_probs=104.4
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhH----HHHHHHhHHHHHh
Q 005903 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE----LKSKLGDFIEQLK 319 (670)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REse----l~sKL~~~~eqL~ 319 (670)
|+-||-.-.|-+..||-.++++.-|+..|-+=. ++=|++.-||.-+.+|+.| |+.|+..-.-+|.
T Consensus 75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~-----------dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDH-----------DQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 455565556778889999999999999875432 3557778888889999988 6667666665555
Q ss_pred hh-hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005903 320 AK-DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK 398 (670)
Q Consensus 320 ~k-~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesK 398 (670)
.. +..-++|... ++-+.+|..++..+=+.|++--.-|.++.-.+..++.++..|+...+.=+.++.+.-.+-++.+.+
T Consensus 144 d~ne~LsQqLska-esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 144 DNNEILSQQLSKA-ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 43 2333444443 555666666666666666666656666666666667788888888888888888887777777777
Q ss_pred HHHHhhhh
Q 005903 399 VTQLTDTN 406 (670)
Q Consensus 399 leeLSeTN 406 (670)
+.++---|
T Consensus 223 L~QlqsEN 230 (305)
T PF14915_consen 223 LSQLQSEN 230 (305)
T ss_pred HHHHHHHH
Confidence 66654433
No 89
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.60 E-value=8.5 Score=46.23 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=19.6
Q ss_pred hhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHH
Q 005903 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (670)
Q Consensus 482 RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE 515 (670)
..-.|-.|.+ |=-+=|..||..||+|.
T Consensus 734 EiaaAA~KLA-------ECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 734 EIAAAAEKLA-------ECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHhcC
Confidence 3445666677 77777888888888885
No 90
>PLN02939 transferase, transferring glycosyl groups
Probab=93.48 E-value=14 Score=45.68 Aligned_cols=157 Identities=23% Similarity=0.337 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-hhH--hhh-------------------------HHHHHhHHHHHHHHHHHHHhh
Q 005903 337 LTMKEKVKSLEEQLKESEIRLQNAN-ACF--QTS-------------------------QEQLNEMDNFIESLKESLYGA 388 (670)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~-akl--Ees-------------------------E~EVaaLerrIelLKE~l~rA 388 (670)
-.||.|+..||-.|.+++.++.-+. ++. +-. -.+...+...+..||+++.--
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFL 245 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 3788899999988888877765332 111 000 113444444444555444321
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHH
Q 005903 389 ESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETL 468 (670)
Q Consensus 389 EsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~v 468 (670)
. ......++..+.---+++++..|++. +.-||..+-.+. .-+++-+-. +|+..|.+
T Consensus 246 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~--- 301 (977)
T PLN02939 246 K----AELIEVAETEERVFKLEKERSLLDAS-------LRELESKFIVAQ------EDVSKLSPL----QYDCWWEK--- 301 (977)
T ss_pred H----HHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh------hhhhhccch----hHHHHHHH---
Confidence 1 11222233333344455555554442 333333332221 011111123 45555544
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 005903 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (670)
Q Consensus 469 IEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t 528 (670)
+|-|+.=+.+|-..+| +.+++...|- -++.++..||++|..|+..|.++
T Consensus 302 ~~~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 350 (977)
T PLN02939 302 VENLQDLLDRATNQVE----KAALVLDQNQ-------DLRDKVDKLEASLKEANVSKFSS 350 (977)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhccch-------HHHHHHHHHHHHHHHhhHhhhhH
Confidence 3334444445554433 3455566666 56789999999999999988754
No 91
>PRK09039 hypothetical protein; Validated
Probab=93.42 E-value=4.4 Score=43.87 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH
Q 005903 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (670)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsL 514 (670)
+..|.++-.-|+-|+..+...+...+.+|.+.. +....|..++.+|...
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~-------~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDR-------ESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 444666666666666666666666666666666 6667777776666544
No 92
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.29 E-value=24 Score=42.59 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=26.7
Q ss_pred CccchhhhchHhhhhhhhhhcccccccchhhhccCCC--chHHHHHHHHH
Q 005903 600 NLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLA--YPEFVKKVIAM 647 (670)
Q Consensus 600 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 647 (670)
|.+.+..-.+-=++.|+..|+.++.+. +-|---|.. -|+-..+++..
T Consensus 817 SGGE~~~~sLalrLALs~~~~~~~~l~-~l~LDEpf~~LD~e~l~~l~~~ 865 (908)
T COG0419 817 SGGERFLASLALRLALSDLLQGRARLE-LLFLDEPFGTLDEERLEKLAEI 865 (908)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccCCC-eeEeeCCCCCCCHHHHHHHHHH
Confidence 334455556667888899999987111 112233333 47777766543
No 93
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=25 Score=42.08 Aligned_cols=103 Identities=20% Similarity=0.138 Sum_probs=60.2
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh--------------
Q 005903 463 WDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS-------------- 528 (670)
Q Consensus 463 sdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t-------------- 528 (670)
.-+...|-.|+......+-+ +. .|++.++.+.++...+...+-...+..+.+
T Consensus 506 ~~l~~~i~~l~~~~~~~~~~-------i~-------~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~L 571 (698)
T KOG0978|consen 506 SKLEEQILTLKASVDKLELK-------IG-------KLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDL 571 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HH-------HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555444444 44 555555555555555555555555544444
Q ss_pred ---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhccCCCC
Q 005903 529 ---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSS 579 (670)
Q Consensus 529 ---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~k~~~ 579 (670)
+...+..-+-+.+.+..+..+++.+......+-+++..|..++..+++.-+
T Consensus 572 q~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 572 QIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 223334445556666667777777777777777778888888887765544
No 94
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.92 E-value=22 Score=41.06 Aligned_cols=325 Identities=20% Similarity=0.233 Sum_probs=188.9
Q ss_pred chHHHHHHHHHHHHHhh--------hhhhHHHhHHHHhhhHHHHHhhhhhhhHH----HHHHHHHHHHHHHHHHhccchH
Q 005903 209 NADQQRHILRMLEKSLA--------RELDLEKKISELNQNEEQLKLKLHHTEQV----AFRMEEAAEVVWGRFLEAENSA 276 (670)
Q Consensus 209 t~eqqR~iLrMLekSla--------~eldLEkkL~~s~~~eeeLk~kL~~~eqe----~~~lEE~~~~~~er~~EAENa~ 276 (670)
|.+||---=+|.||.|- +=|+++-.- ...++||+......-+- ...+-+.-..+++++-||.-.+
T Consensus 218 tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~---~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s 294 (622)
T COG5185 218 TLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNY---EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS 294 (622)
T ss_pred hHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCcc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777444567777653 334444332 23567777766554443 3445555666777777777665
Q ss_pred HHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHH
Q 005903 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKES 353 (670)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s---~esEv~sLqkKvksLE~qLdes 353 (670)
+-. +.+-.|-..++.|+|-..--++-+++|-+.-.- .+++|.+. +++|+..|+.+...|-.|+..-
T Consensus 295 ~~i----~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g-------~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq 363 (622)
T COG5185 295 QKI----KTLREKWRALKSDSNKYENYVNAMKQKSQEWPG-------KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ 363 (622)
T ss_pred HHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 533 566677777777776555555555555443322 22333322 5788889988888888877764
Q ss_pred HHHH---HHhHhhHhhhHHHHHhHHHHHHH----HHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC----
Q 005903 354 EIRL---QNANACFQTSQEQLNEMDNFIES----LKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS---- 422 (670)
Q Consensus 354 ~eQL---~~A~aklEesE~EVaaLerrIel----LKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~---- 422 (670)
.... ...++.-+..--++.-++-.+.. +++.=..|+.++.+.+-++-.+-...+++.+-+..+...+..
T Consensus 364 ~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~ 443 (622)
T COG5185 364 GISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLK 443 (622)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCcee
Confidence 3322 22222222221133333333332 334445678888888888887777777777665444433211
Q ss_pred ------------cchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHh--h-hHHHHHhHHHHHHHHhhhhhhhhhhhhhhh
Q 005903 423 ------------NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--M-LYSAIWDMETLIEDLKSKVSKAESKTESVE 487 (670)
Q Consensus 423 ------------deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--m-kyseisdme~vIEdLk~Kl~rAE~RaEsaE 487 (670)
-.+++--++..|... +-+.....|+ . +-..+..+.+.|-+|...+.+-|.|+-.|=
T Consensus 444 iN~E~~~~~~sg~~~~I~~~i~eln~~---------i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~ 514 (622)
T COG5185 444 INIEQLFPKGSGINESIKKSILELNDE---------IQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEAN 514 (622)
T ss_pred eccccCCccccCchHhHHHHHHHHhHH---------HHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 144554455444432 1111122222 2 345678888999999999999999999999
Q ss_pred hhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH---H-HHHHHHHHHHHHHHHHHHHHhh
Q 005903 488 EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT---K-LMMEMVMQLATQRELIQKQVYS 559 (670)
Q Consensus 488 sKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Ra---k-~aE~lV~KL~~ErdrLedQL~s 559 (670)
++|-++-++|. +|+..-+..+.-||..+.+.+-.--...=+++.|- . .+.++.-.+...|..++.|+..
T Consensus 515 s~~~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~ 587 (622)
T COG5185 515 SKFELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIH 587 (622)
T ss_pred HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775 67777777788888877776654443343443331 1 1334444455555556555443
No 95
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.88 E-value=0.03 Score=64.91 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHH
Q 005903 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 409 (670)
Q Consensus 371 VaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdEL 409 (670)
++.+++.+..++-.+..++..+.....++..+....+++
T Consensus 166 ~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~ 204 (722)
T PF05557_consen 166 ISSLKNELSELERQAENAESQIQSLESELEELKEQLEEL 204 (722)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443333
No 96
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.76 E-value=25 Score=41.43 Aligned_cols=402 Identities=19% Similarity=0.194 Sum_probs=187.0
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhh
Q 005903 92 IEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQS 171 (670)
Q Consensus 92 ~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qs 171 (670)
.-|-|.|+=|-.-||+++++|.+-=++.+. .|+...+-. +-|=.- -=+.|+.-..--||++|..|-.+-+-|
T Consensus 11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~----srk~L~e~t---refkk~-~pe~k~k~~~~llK~yQ~EiD~LtkRs 82 (629)
T KOG0963|consen 11 YWKRFDLERLQRELDAEATEIAQRQDESEI----SRKRLAEET---REFKKN-TPEDKLKMVNPLLKSYQSEIDNLTKRS 82 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHhH---HHHhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999999887665543 333322211 111110 015688888888999999999887766
Q ss_pred Hhhhhhh----hhcccCCCcccccccccCCccccccccccc-chHHHHHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHh
Q 005903 172 AKFQRVL----SYFIHGNNDEALEFSANGQLSNINGKSKMK-NADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKL 246 (670)
Q Consensus 172 a~f~r~~----~~~~~~~~~~~~~~~e~~~~~~~~~~~~mq-t~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~ 246 (670)
--=+.+| ..+..-+.... + ..+ -.+-..+.+ ..++.|...+-||+--..-.|++++= .....|+.
T Consensus 83 k~aE~afl~vye~L~eaPDP~p--l-l~s---a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq----~~v~~l~e 152 (629)
T KOG0963|consen 83 KFAEAAFLDVYEKLIEAPDPVP--L-LAS---AAELLNKQQKASEENEELKEELEEVNNELADLKTQQ----VTVRNLKE 152 (629)
T ss_pred HhhHHHHHHHHHHHhhCCCCch--H-HHH---HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhH----HHHHhHHH
Confidence 4333332 22222222111 0 000 011111112 34556666666666555444444432 23445555
Q ss_pred hhhhhhHH-HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHH
Q 005903 247 KLHHTEQV-AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 325 (670)
Q Consensus 247 kL~~~eqe-~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~L 325 (670)
++...++. .-+.+.++...|+..- .|..+...| +++..+..+-.+......=+.+.+.++..--++.......
T Consensus 153 ~l~k~~~~~~~~ie~~a~~~e~~~~--q~~~e~e~~----L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~ 226 (629)
T KOG0963|consen 153 RLRKLEQLLEIFIENAANETEEKLE--QEWAEREAG----LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKY 226 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 55444443 2345556667766542 233333332 3333333333333322222222222222222222111110
Q ss_pred HHhhcC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh--------HHHHHhHHHHHHHHHHHHHhhhh
Q 005903 326 QKLEST-------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS--------QEQLNEMDNFIESLKESLYGAES 390 (670)
Q Consensus 326 ekl~~s-------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes--------E~EVaaLerrIelLKE~l~rAEs 390 (670)
+.=... --.++-.-+.++-.+|.+......|+..++.+.... ...+..+++.|..|=.+|.+=++
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 000000 123334445555555555555555555555444332 33444566666666666665444
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHH
Q 005903 391 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (670)
Q Consensus 391 Ra~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIE 470 (670)
-+.....+... -+..||++++....-++.-+.-... |+ -|++|+.-+.+..
T Consensus 307 S~~~e~e~~~~------------------------qI~~le~~l~~~~~~leel~~kL~~----~s-DYeeIK~ELsiLk 357 (629)
T KOG0963|consen 307 SLVEEREKHKA------------------------QISALEKELKAKISELEELKEKLNS----RS-DYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHhh----hc-cHHHHHHHHHHHH
Confidence 43333322111 1233333333333222221111111 12 6999998887766
Q ss_pred HHhh-hhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHH
Q 005903 471 DLKS-KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQ 549 (670)
Q Consensus 471 dLk~-Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~E 549 (670)
...= ..+.|...-+.+..==..|-+.|..|..|++.||...-.+..-..++..+ ..+....+...++++.+|+.-
T Consensus 358 ~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~----~~el~~~~~~~ke~i~klE~d 433 (629)
T KOG0963|consen 358 AIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKK----GEELEAKATEQKELIAKLEQD 433 (629)
T ss_pred HhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhh----hhhhHHHHHHHHHHHHHHHhh
Confidence 3221 11222222122222234667999999999999976655444422222221 233344445555666665544
Q ss_pred H
Q 005903 550 R 550 (670)
Q Consensus 550 r 550 (670)
.
T Consensus 434 l 434 (629)
T KOG0963|consen 434 L 434 (629)
T ss_pred H
Confidence 3
No 97
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.48 E-value=19 Score=42.14 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=40.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005903 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (670)
...-..-|+.++..++.++..||.+++.=..+...... ++. ...+.++..++.||..++.++..|.+
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~------------~~~-~~~~~~L~~l~~ql~~a~~~~~~a~a 258 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG------------NNA-TLATQQLAELNTELSRARANRAAAEG 258 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc------------CCc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777777777766665554433321 221 11235677777777777665555554
Q ss_pred hhHh
Q 005903 447 SSEA 450 (670)
Q Consensus 447 saEa 450 (670)
-...
T Consensus 259 ~~~~ 262 (754)
T TIGR01005 259 TADS 262 (754)
T ss_pred HHHH
Confidence 4443
No 98
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.39 E-value=0.06 Score=62.46 Aligned_cols=118 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhH
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (670)
+.+.+...+..|++++.+.+.-......+|+.+.....+|..+...|...+ +.+..|--.+-+.+ ..|
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A----~~a~~LrDElD~lR-------~~a- 307 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA----REARALRDELDELR-------EKA- 307 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHH-------HHH-
Confidence 445666667777777777666666666666666665555555554444432 12222222222222 111
Q ss_pred hHHHHHhhhHHHHHhHHHHHHHHhhhhhh---hhhhhhhhhhhhhhcccchhhHHHHHHHHHh
Q 005903 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSK---AESKTESVEEQCIVLSEDNFELKNKQSFMRD 509 (670)
Q Consensus 450 as~eqQ~mkyseisdme~vIEdLk~Kl~r---AE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~ 509 (670)
+.+.++++.|+-.|.|+.- -..|.+..+.++..|=+++..|+++|+-++.
T Consensus 308 ----------~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~ 360 (713)
T PF05622_consen 308 ----------DRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARA 360 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1233333333333333322 2234445556677777888888888876544
No 99
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.28 E-value=12 Score=37.41 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=6.1
Q ss_pred HHHHHhhHHHHHHHHH
Q 005903 504 QSFMRDKIKILESSLN 519 (670)
Q Consensus 504 L~~l~~~lKsLE~sl~ 519 (670)
+.-++.++..+|...+
T Consensus 167 ~er~e~ki~~~ea~a~ 182 (221)
T PF04012_consen 167 FERMEEKIEEMEARAE 182 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 100
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.18 E-value=16 Score=37.72 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh-----------
Q 005903 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD----------- 404 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSe----------- 404 (670)
+..+.+.+..|+.+++....+...+..+..........+-.+-++|...+.+-...+.....+...+..
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~ 126 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 444555566666666666666665555544433344444444444444444444444444444433333
Q ss_pred -hhHHHHHHhhhhhcCCC
Q 005903 405 -TNLELSEEINFLKGNND 421 (670)
Q Consensus 405 -TNdELerelkvLesrs~ 421 (670)
.-.|..+.+..+++|.+
T Consensus 127 ~~l~ea~~mL~emr~r~f 144 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDF 144 (264)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 44445555666666643
No 101
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.98 E-value=21 Score=40.83 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=4.8
Q ss_pred ccccccCCC
Q 005903 592 ELLINPTNN 600 (670)
Q Consensus 592 ~~~~~~~~~ 600 (670)
+|+|+++.+
T Consensus 423 ~f~~~~n~g 431 (563)
T TIGR00634 423 EFLFSANTG 431 (563)
T ss_pred EEEEecCCC
Confidence 455655544
No 102
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.94 E-value=31 Score=40.62 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=85.5
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHH
Q 005903 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSL 346 (670)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksL 346 (670)
+.+.|-.|+.-.|.+.--++-.+||+-|+--+....+=+++..||.... ++++. ++.|+..|+..-..+
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~----------e~le~-K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK----------EKLEL-KSQEAQSLQEQRDQY 235 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHh-hhHHHHHHHHHHHHH
Confidence 4444555555555555555555555555433322222223333333333 34444 367888888877777
Q ss_pred HHHHHHHHHHHHHhHhhHhhhHH-------HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 005903 347 EEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesr 419 (670)
-.+|..|....+......++... -+..|.+--.--+..+..+-.-++.+...++.++.-|.+|...+..+-..
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 77777777666555555454321 23455554455566677788888899999999999999999988754433
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.91 E-value=17 Score=37.37 Aligned_cols=113 Identities=20% Similarity=0.250 Sum_probs=65.1
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHH
Q 005903 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMET 467 (670)
Q Consensus 388 AEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~ 467 (670)
+-.|+..--.||....++.++.+..+. +.+..|.+|++-..--++.|+++-+.-.. +...++-.+.
T Consensus 16 ~n~~L~~en~kL~~~ve~~ee~na~L~----------~e~~~L~~q~~s~Qqal~~aK~l~eEled----Lk~~~~~lEE 81 (193)
T PF14662_consen 16 NNQKLADENAKLQRSVETAEEGNAQLA----------EEITDLRKQLKSLQQALQKAKALEEELED----LKTLAKSLEE 81 (193)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 344555555666666666666666665 34566677777654333333333333322 3333333333
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH
Q 005903 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (670)
Q Consensus 468 vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsL 514 (670)
.=--|.......|...-+...++..|-+.|-.|..|..-+..+.+.|
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 33333344445566666777777777777777777777777777766
No 104
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.84 E-value=13 Score=41.23 Aligned_cols=31 Identities=32% Similarity=0.312 Sum_probs=12.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 005903 381 LKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (670)
Q Consensus 381 LKE~l~rAEsRa~tAesKleeLSeTNdELer 411 (670)
|...+..++.+......+...+...-.+++.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLES 345 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333333
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.75 E-value=10 Score=40.61 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHH
Q 005903 252 EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (670)
Q Consensus 252 eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (670)
...|.+--=.|...|=-|= ...+.|+-..|..++..++.|.........-+.
T Consensus 125 ~~vK~~aRl~aK~~WYeWR-----~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 125 QLVKTYARLEAKKMWYEWR-----MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556777777775 677888888888888888888766655544443
No 106
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.50 E-value=24 Score=43.84 Aligned_cols=226 Identities=18% Similarity=0.210 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHH--HHHhHHHHHhhhhHHHHHhhcCChh
Q 005903 257 RMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS--KLGDFIEQLKAKDMVLQKLESTKNS 334 (670)
Q Consensus 257 ~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s--KL~~~~eqL~~k~~~Lekl~~s~es 334 (670)
.+..++..+-+|.=..++.+++..+..-.+..-++.+.-.++.- |..|-+ .|=...++-......+.+. ..
T Consensus 238 ~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~k---e~~l~erp~li~~ke~~~~~k~rl~~~----~k 310 (1141)
T KOG0018|consen 238 RLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEK---EEKLAERPELIKVKENASHLKKRLEEI----EK 310 (1141)
T ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHhhcchhhccchhHHHHh----hh
Confidence 34445555566666777777777766655555444443332210 111111 0000001111111111111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHH----HHHHHHHHH-------HhhhhhHHHHHHHHHHHh
Q 005903 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN----FIESLKESL-------YGAESRAESAEEKVTQLT 403 (670)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer----rIelLKE~l-------~rAEsRa~tAesKleeLS 403 (670)
.+.+.++....+..+++..+-++..+..+-++.+.++....+ .+.+.++.+ +.|.-++ ..+|.
T Consensus 311 ~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~------~~el~ 384 (1141)
T KOG0018|consen 311 DIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA------LEELE 384 (1141)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh------HHHHH
Confidence 333444444444444444444555555555555555554444 233333333 2222222 33333
Q ss_pred hhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhh
Q 005903 404 DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT 483 (670)
Q Consensus 404 eTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~Ra 483 (670)
--|.+-...-..|.+ ...|...+|..++..+ .+.+..+.+++-+...+.-.....++++.++..-+.+.
T Consensus 385 ~ln~~~r~~~~~ld~----~~~~~~elE~r~k~l~-------~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~ 453 (1141)
T KOG0018|consen 385 VLNRNMRSDQDTLDH----ELERRAELEARIKQLK-------ESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLV 453 (1141)
T ss_pred HHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 333333333332322 2455667777777666 55566666666677778888888888999999999999
Q ss_pred hhhhhhhhhcccchhhHHHHHHHHHhhHHH
Q 005903 484 ESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (670)
Q Consensus 484 EsaEsKc~~Lse~N~ELeEEL~~l~~~lKs 513 (670)
..++++.. ++++||.-+...+-.
T Consensus 454 ~~~~~~~~-------e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 454 SSAEEEPY-------ELNEELVEVLDQLLD 476 (1141)
T ss_pred hhhhhhHH-------HHHHHHHHHHHHHHh
Confidence 99999999 999999998776653
No 107
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.33 E-value=39 Score=40.48 Aligned_cols=144 Identities=20% Similarity=0.257 Sum_probs=89.7
Q ss_pred HHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh----hHHHHHhhcC---ChhHHHHHHHHHHHHHHH
Q 005903 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK----DMVLQKLEST---KNSEVLTMKEKVKSLEEQ 349 (670)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k----~~~Lekl~~s---~esEv~sLqkKvksLE~q 349 (670)
+-+.|-...++..+.-.+++.++-..+|.+++.-+...+-++... +..+-++... .+.++..+.--+..++++
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888899999999999999999998888777777666643 2222222211 234444444445555666
Q ss_pred HHHHHHHHHHhHhhHhh---hHHHHHhHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 005903 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAE------SAEEKVTQLTDTNLELSEEINFLKGNN 420 (670)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKE~l~rAEsRa~------tAesKleeLSeTNdELerelkvLesrs 420 (670)
++..-.|+....-+.-+ ...++++-+-.+......++..++-.. .-.+.++.+..++.+...+++.++.+.
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~ 274 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENR 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66555555544433322 244566666666667777666644322 234566777777888888887777653
No 108
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=91.33 E-value=11 Score=38.24 Aligned_cols=145 Identities=23% Similarity=0.291 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 005903 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELer 411 (670)
+.+||+||..||-+-..++..+.......-.. +.+..+=++....+-..--.-.+.+..|+++|..|.+ +|+-
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEK---QLey 82 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEK---QLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 56899999999988777777765432221111 2222222222222222222334566777777777765 5556
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005903 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (670)
Q Consensus 412 elkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~ 491 (670)
+++.+++- +.||-..+|+|..--+ ..+ .-..++++++++ ++..|..|.
T Consensus 83 MRkmv~~a---e~er~~~le~q~~l~~-----------e~~--------------~~~~~~~~klek----Le~LE~E~~ 130 (178)
T PF14073_consen 83 MRKMVESA---EKERNAVLEQQVSLQR-----------ERQ--------------QDQSELQAKLEK----LEKLEKEYL 130 (178)
T ss_pred HHHHHHHH---HHhhhHHHHHHHHHHH-----------Hhc--------------cchhhHHHHHHH----HHHHHHHHH
Confidence 66666653 3466666666643211 000 111223344332 335556688
Q ss_pred hcccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 005903 492 VLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (670)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~ 522 (670)
.|.--=++-..+++.||.+|..-.
T Consensus 131 -------rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 131 -------RLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555588889999988876543
No 109
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.24 E-value=35 Score=39.75 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=21.4
Q ss_pred HHHhccchHHHHhhhhHHHHh--hhhHHhhhccccc
Q 005903 268 RFLEAENSAEVLMGISKEMLG--RFQIVQFNLNGSL 301 (670)
Q Consensus 268 r~~EAENa~EvL~g~skel~g--kLq~~qf~L~as~ 301 (670)
.+++.++..++|....+.+.| .+.....+|....
T Consensus 160 ~la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~ 195 (650)
T TIGR03185 160 ALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVL 195 (650)
T ss_pred HHhccccchHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 466778888877766666654 3445556666543
No 110
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.97 E-value=0.13 Score=59.88 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHh
Q 005903 400 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (670)
Q Consensus 400 eeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (670)
..+..-.++.++...-|+.......+++..|+.|+.+....++..
T Consensus 484 ~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~ 528 (713)
T PF05622_consen 484 EELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQ 528 (713)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344333333456777777776665444433
No 111
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=90.93 E-value=35 Score=40.64 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=79.3
Q ss_pred hhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 005903 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (670)
Q Consensus 479 AE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~ 558 (670)
.+......+..|...- +++..+.+.+..|...+..++......-++...-...+..++..|+.....|.+..
T Consensus 225 ~~~~~~~l~~~~~~~~-------~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~- 296 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIK-------KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK- 296 (670)
T ss_pred HHHhhhhhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3334444555555333 33444444444444444444444444433333333444444778888888888888
Q ss_pred hhHHhhHHHHHHHhhcc------------------CC-CCceeccc--------CCCCCCc----cccccCCCccchhhh
Q 005903 559 SLTSENKLLVEKLQYSG------------------KS-SSATMYNA--------GDTDDKE----LLINPTNNLAGATVK 607 (670)
Q Consensus 559 s~keenK~L~ekLd~T~------------------k~-~~~tm~~~--------gd~~~~~----~~~~~~~~~~~~~~k 607 (670)
.+...++.|..++.+.| +. +.++-|+- .+++++. |.|.+=-+..+++.-
T Consensus 297 ~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~ 376 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDD 376 (670)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHH
Confidence 77788888866666551 11 22222221 1122222 444444456678889
Q ss_pred chHhhhhhhhhhcccccccchh
Q 005903 608 TSEDAVSLMKSVQAGTHLNICR 629 (670)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
-|+|.=||..|+=-| .|+|-
T Consensus 377 VF~e~~~lv~S~lDG--YnVCI 396 (670)
T KOG0239|consen 377 VFEEVSPLVQSALDG--YNVCI 396 (670)
T ss_pred HHHHHHHHHHHHhcC--cceeE
Confidence 999999999999988 57774
No 112
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.61 E-value=57 Score=41.11 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=38.4
Q ss_pred HHHHHhHHHHHHHHhhhhhh-----hhhhhhhhh---hh-------hhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 005903 459 YSAIWDMETLIEDLKSKVSK-----AESKTESVE---EQ-------CIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (670)
Q Consensus 459 yseisdme~vIEdLk~Kl~r-----AE~RaEsaE---sK-------c~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q 523 (670)
--.+.+.+.-++.|+..+.. +|..++.++ .+ +.-+.+.|.+|.++|.....++..+-.+..++.+
T Consensus 214 ~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~ 293 (1109)
T PRK10929 214 KKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAAS 293 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666655433 222222222 12 2333477999999999999999888555554433
No 113
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.10 E-value=56 Score=40.24 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005903 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (670)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLS 403 (670)
+++++....|++-+..|++.|....++.+-+....+++++.+|+++..=...=.....|..+..
T Consensus 388 ~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~ 451 (980)
T KOG0980|consen 388 QEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQ 451 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488888899999999999999998888888889999999999888776665555555554433
No 114
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.07 E-value=45 Score=39.18 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHH
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEK 525 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~k 525 (670)
+|+-|....+.....|-...+++....
T Consensus 380 ~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 380 ALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666677777777776666666665554
No 115
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.98 E-value=20 Score=34.94 Aligned_cols=94 Identities=21% Similarity=0.205 Sum_probs=48.8
Q ss_pred HHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 005903 411 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (670)
Q Consensus 411 relkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc 490 (670)
.+++--++.+.+-.+++..||+.|.-+...++++..=||.++. +|+.|+.+++..-+.....+.-.
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~--------------eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA--------------EIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445554445667777777777766666666666665554 22323333333222222333334
Q ss_pred hhcccchhhHHHHHHHHHhhHHHHHHHH
Q 005903 491 IVLSEDNFELKNKQSFMRDKIKILESSL 518 (670)
Q Consensus 491 ~~Lse~N~ELeEEL~~l~~~lKsLE~sl 518 (670)
..|+..+-.|..+|.-...++..||...
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555443
No 116
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.65 E-value=71 Score=40.80 Aligned_cols=123 Identities=14% Similarity=0.249 Sum_probs=72.7
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHhhHhhhHHHHHhHHHHHHHHHHHHH
Q 005903 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR-LQNANACFQTSQEQLNEMDNFIESLKESLY 386 (670)
Q Consensus 308 ~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQ-L~~A~aklEesE~EVaaLerrIelLKE~l~ 386 (670)
...|..++++++.-...|+.+... .+.+..+....+.|... +......+-....++..+.+.+..+..++.
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~~~--------~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLEAL--------ERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELE 293 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555555544442 12333333444444442 222222222335677778888888888888
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC-CcchhhhhHHHHHHHHH
Q 005903 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-SNTKKVGILENQLRDLE 438 (670)
Q Consensus 387 rAEsRa~tAesKleeLSeTNdELerelkvLesrs~-~deEK~~~LE~QLKEa~ 438 (670)
+++.+...++.++..+...-.++..++..|++... .+-+....++.|++...
T Consensus 294 ~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~ 346 (1353)
T TIGR02680 294 TAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQ 346 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877622 11233344445555444
No 117
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.41 E-value=26 Score=35.48 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhh
Q 005903 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (670)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rA 388 (670)
.--+..++++|.+....+..+.+.--..+.++...+..++..+.....|
T Consensus 30 ~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~A 78 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELA 78 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544443333445555555555554444443
No 118
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.01 E-value=9.7 Score=39.55 Aligned_cols=123 Identities=29% Similarity=0.357 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh
Q 005903 347 EEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (670)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK 426 (670)
|...+++..+|.........+...+..-+.++..|.++...|+.-+..-+.+-..+...+..|...-... ..+|
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~------~eEk 77 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ------EEEK 77 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3344444444444444444445555566777888888888888777666665555555555444432211 2233
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 005903 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (670)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc 490 (670)
..|+.++.++.. +.. + +-.++.+++.-.+.|+.++..|....+.+-.+.
T Consensus 78 -~~Le~e~~e~~~---------~i~-~----l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 78 -EQLEQELREAEA---------EIA-R----LEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp ----HHHHHHHHH---------HHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH---------HHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777651 111 1 344566666667777777777766544444443
No 119
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.46 E-value=23 Score=35.81 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=79.0
Q ss_pred HHHHHh-HHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 005903 459 YSAIWD-METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (670)
Q Consensus 459 yseisd-me~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak 537 (670)
|..|.+ =+.+|.-||.++.-...+.+..+.-..-++..|..|.+-|...+..+..|...+..+..-+.+ ++.+..|.+
T Consensus 18 YndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~-L~~~k~rl~ 96 (201)
T PF13851_consen 18 YNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS-LQNLKARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 666554 458899999999888888888888888899999999999999999999999999887766553 444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHh
Q 005903 538 LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (670)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (670)
..+.-+..|..+-+-|+..+..+..+...|-.++.
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444444444444444444333
No 120
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.07 E-value=54 Score=37.56 Aligned_cols=208 Identities=20% Similarity=0.189 Sum_probs=117.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhh
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (670)
-.+...|.+|.-.|+|.+-+.|-|+..+.+.=+. |-+- +..+ -+|...||+..-..+.| +.
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~r---------rhrE-il~k----~eReasle~Enlqmr~q-----ql 309 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEER---------RHRE-ILIK----KEREASLEKENLQMRDQ-----QL 309 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---------HHHH-HHHH----HHHHHHHHHHHHHHHHH-----HH
Confidence 4578889999999999999999888776543221 1111 1111 14455555555555433 34
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 005903 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (670)
Q Consensus 448 aEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~ 527 (670)
.+.+-+ +.+.++|.-..++.|-++..|...++|.+-.+++ ..-+.=.-+..+| -+..++|.+
T Consensus 310 eeente----lRs~~arlksl~dklaee~qr~sd~LE~lrlql~-------~eq~l~~rm~d~L-------rrfq~ekea 371 (502)
T KOG0982|consen 310 EEENTE----LRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI-------CEQKLRVRMNDIL-------RRFQEEKEA 371 (502)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHhhHH
Confidence 445555 7899999999999999998888888888888777 3322222233333 334455555
Q ss_pred hHHHHHHhHHHHHHHHHHHH------------------HHHHHHHHHHhhhHHhhHHHHHHHhhc---cCCCCceecccC
Q 005903 528 SAKEVNHRTKLMMEMVMQLA------------------TQRELIQKQVYSLTSENKLLVEKLQYS---GKSSSATMYNAG 586 (670)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~------------------~ErdrLedQL~s~keenK~L~ekLd~T---~k~~~~tm~~~g 586 (670)
|. ++|+++...|+ ....-|+..+-.++.+|..|.+..+.. ---.+.+|-.||
T Consensus 372 tq-------ELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~lkn~ 444 (502)
T KOG0982|consen 372 TQ-------ELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQFLKNW 444 (502)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHHHHHH
Confidence 52 23333333332 223346667777788888876555432 222233333333
Q ss_pred CCCCCccccccCCCccchhhhchHhhhhhhhhhccccccc
Q 005903 587 DTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLN 626 (670)
Q Consensus 587 d~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 626 (670)
-+.+..-+++++-+..-|.++ ||-.+|.-.-.|
T Consensus 445 -----ha~~~~~~Slaaeid~~sqde--LmqafqeqeeiN 477 (502)
T KOG0982|consen 445 -----HATFSLFFSLAAEIDEMSQDE--LMQAFQEQEEIN 477 (502)
T ss_pred -----HHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHhh
Confidence 122233344555554444443 555555544444
No 121
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.02 E-value=37 Score=36.22 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH-----
Q 005903 392 AESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME----- 466 (670)
Q Consensus 392 a~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme----- 466 (670)
++.....|..|+++|.+|-+.+...+..+. .++..| .+|--.|-.+.+.+
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~---~~Vr~l----------------------Lqqy~~~~~~i~~le~~~~ 62 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTA---LKVRKL----------------------LQQYDIYRTAIDILEYSNH 62 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHH---HHHHHH----------------------HHHHHHHHHHHHHHHccCh
Confidence 345566677788888888777776665431 222111 12222455555554
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 005903 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (670)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL 546 (670)
.-+++++++|...+++ .+++.. .|..++..+..++......++-..--++ +|--.|+=-|-.++.+|
T Consensus 63 ~~l~~ak~eLqe~eek---~e~~l~-------~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EYPvK~vqIa~L~rql 129 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEK---EESKLS-------KLQQQLEQLDAKIQKTQEELNFLSTYKD---HEYPVKAVQIANLVRQL 129 (258)
T ss_pred HHHHHHHHHHHHHHHH---HHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHH
Confidence 3466677777766644 556677 7777777777777766666665555555 67777777788899999
Q ss_pred HHHHHHHHHHHhhhHHhhHHHHHHHh
Q 005903 547 ATQRELIQKQVYSLTSENKLLVEKLQ 572 (670)
Q Consensus 547 ~~ErdrLedQL~s~keenK~L~ekLd 572 (670)
+.-.|+-++++-.+.+-.+..-..+-
T Consensus 130 q~lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 130 QQLKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889888888888777766555443
No 122
>PLN03188 kinesin-12 family protein; Provisional
Probab=87.99 E-value=90 Score=39.91 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=78.4
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh----
Q 005903 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---- 528 (670)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~-----~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t---- 528 (670)
+...=+++-.-|.|.|--.+||=-| .+|++.+ =||---.|=+.|-++++..=|+|+.+|--.-+.--+.
T Consensus 1126 ll~~hr~i~egi~dvkkaaakag~k--g~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagell 1203 (1320)
T PLN03188 1126 LLARHRRIQEGIDDVKKAAARAGVR--GAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELL 1203 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Confidence 3344455556677777666665444 5667666 0111122334455555555789999887655544444
Q ss_pred --HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhh
Q 005903 529 --AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (670)
Q Consensus 529 --lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (670)
+|||+--+.++++--+..+.|-+++..||-.+|.++..=...+++
T Consensus 1204 vrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1204 VRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999665556665
No 123
>PLN02939 transferase, transferring glycosyl groups
Probab=87.89 E-value=59 Score=40.48 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=38.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 005903 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (670)
Q Consensus 468 vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t 528 (670)
.|+-|+.|+...|+|. -.++.|+.-++..+...++..+..+.+...+-.+.
T Consensus 352 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (977)
T PLN02939 352 KVELLQQKLKLLEERL----------QASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402 (977)
T ss_pred HHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4466777888888773 35566788888999999999999988876665553
No 124
>PRK10869 recombination and repair protein; Provisional
Probab=87.78 E-value=59 Score=37.54 Aligned_cols=91 Identities=10% Similarity=0.109 Sum_probs=45.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHH-HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHH
Q 005903 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS-AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (670)
Q Consensus 423 deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkys-eisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELe 501 (670)
|.++++.+|..|-... .-.+ ||- ++.+....-++++.++...+ ..+..+. +|+
T Consensus 294 dp~~l~~ie~Rl~~l~-----------~L~r----Kyg~~~~~~~~~~~~l~~eL~~L~----~~e~~l~-------~Le 347 (553)
T PRK10869 294 DPNRLAELEQRLSKQI-----------SLAR----KHHVSPEELPQHHQQLLEEQQQLD----DQEDDLE-------TLA 347 (553)
T ss_pred CHHHHHHHHHHHHHHH-----------HHHH----HhCCCHHHHHHHHHHHHHHHHHhh----CCHHHHH-------HHH
Confidence 6778888888776655 4445 565 44444444444444433222 2222233 333
Q ss_pred HHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH-HHhHHHHHHHHHHHHHHHHHH
Q 005903 502 NKQSFMRDKIKILESSLNRANIEKAASAKEV-NHRTKLMMEMVMQLATQRELI 553 (670)
Q Consensus 502 EEL~~l~~~lKsLE~sl~kA~q~ke~tlKea-e~Rak~aE~lV~KL~~ErdrL 553 (670)
+++..+..++. ..++.+ ..|.++|.++...+..+...|
T Consensus 348 ~e~~~l~~~l~--------------~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 348 LAVEKHHQQAL--------------ETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333332 223332 356777777777766655444
No 125
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=87.72 E-value=29 Score=41.75 Aligned_cols=123 Identities=25% Similarity=0.260 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhh
Q 005903 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (670)
Q Consensus 378 IelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m 457 (670)
-.+.+..+.--|.|..+|...-.-...-||+++.++.-=..---..++|..+|-.+|.-++.+|+++-. +++.-+
T Consensus 65 k~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpe---- 139 (916)
T KOG0249|consen 65 KEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPE---- 139 (916)
T ss_pred hcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhh----
Confidence 344555666667777777777778888899998876522221112356666666667666666666666 554433
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHH
Q 005903 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK 512 (670)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lK 512 (670)
.-++..+-. ..+.+||.+-...|..+.-|-..|-+++.||.-.+.+++
T Consensus 140 veael~qr~-------~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 140 VEAELAQRN-------AALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred hHHHHHHHH-------HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 112233333333344444444444466666666666655
No 126
>PRK10698 phage shock protein PspA; Provisional
Probab=87.51 E-value=37 Score=34.89 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=8.7
Q ss_pred hhhhhhhhhhhhh
Q 005903 474 SKVSKAESKTESV 486 (670)
Q Consensus 474 ~Kl~rAE~RaEsa 486 (670)
.|+.+.|.+++..
T Consensus 173 ~ki~~~Ea~aea~ 185 (222)
T PRK10698 173 RRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHhHh
Confidence 5666777777665
No 127
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.48 E-value=87 Score=39.15 Aligned_cols=197 Identities=16% Similarity=0.208 Sum_probs=99.0
Q ss_pred HhhhccccccchhHHHHHHHhHHHHHhh--------------hhHHHHHhhcC----Ch-------hHHHHHHHHHHHHH
Q 005903 293 VQFNLNGSLQRESELKSKLGDFIEQLKA--------------KDMVLQKLEST----KN-------SEVLTMKEKVKSLE 347 (670)
Q Consensus 293 ~qf~L~as~~REsel~sKL~~~~eqL~~--------------k~~~Lekl~~s----~e-------sEv~sLqkKvksLE 347 (670)
..+-+|++....+++.+.....--|+.- +-.-.+.|.++ .. .|+..|+++-++||
T Consensus 115 S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le 194 (1072)
T KOG0979|consen 115 SKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLE 194 (1072)
T ss_pred cceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666555555441 11111122222 12 45666777777777
Q ss_pred HHHHHHHHHHHHhHhhHhhhHHHHH------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 005903 348 EQLKESEIRLQNANACFQTSQEQLN------EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (670)
Q Consensus 348 ~qLdes~eQL~~A~aklEesE~EVa------aLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~ 421 (670)
+.++.....++......+..+..|. .....|+.|+.+..--+ ...-..+....-++-+-+..+++.|.-...
T Consensus 195 ~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~--y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~ 272 (1072)
T KOG0979|consen 195 DKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE--YKKHDREYNAYKQAKDRAKKELRKLEKEIK 272 (1072)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hHhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777666665555444443322211 22233333321111000 001111222222222333333333322211
Q ss_pred CcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005903 422 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (670)
Q Consensus 422 ~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~ 491 (670)
.=+.+..-||++.++...+.-.+....-++.++-..+++.+.++..-++.++.+++-...+++.-...+.
T Consensus 273 pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~ 342 (1072)
T KOG0979|consen 273 PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIE 342 (1072)
T ss_pred hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445555555555555555555555665555557888999999999888888887777777777666
No 128
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.30 E-value=26 Score=32.93 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhh
Q 005903 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (670)
Q Consensus 500 LeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (670)
.-++|..++..+..+..........-+..-..+.....-.+.--..|..+++.++..+--+..-|++|.+.++.
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444333333333444455566677777777777777888888887764
No 129
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.23 E-value=16 Score=34.53 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 005903 538 LMMEMVMQLATQRELIQKQVYSLTS 562 (670)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQL~s~ke 562 (670)
.+...-+|.+.|+-|-+-++..+++
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444
No 130
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.87 E-value=82 Score=38.22 Aligned_cols=73 Identities=10% Similarity=0.221 Sum_probs=41.8
Q ss_pred ccccchhhhhhH--HHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHH---hhhhhhhhHHhHHHHHHHHHhhhh
Q 005903 52 DLAYSSEKLVNL--HVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDL---LFGILDSELREVERLLDTIHVEIV 124 (670)
Q Consensus 52 ~la~~SEKl~NL--~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDl---L~gildsEv~ele~~~~~lq~~I~ 124 (670)
|+...=+.++.| .+|..-+.-+-..|-.+...+..-=..-+.+.|..|. ++-.+-.-++++..-...++..+.
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566554 6888888888888887765554433344555665555 333333444555555555555554
No 131
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.81 E-value=38 Score=34.36 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=14.6
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhh
Q 005903 469 IEDLKSKVSKAESKTESVEEQCI 491 (670)
Q Consensus 469 IEdLk~Kl~rAE~RaEsaEsKc~ 491 (670)
.++|..+|+.++.+++..+.++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666
No 132
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=86.43 E-value=86 Score=38.00 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=65.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcc--hhhhhHHHHHHHHHHHHHHhh
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNT--KKVGILENQLRDLEIQLQQAK 445 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~de--EK~~~LE~QLKEa~~QLqhA~ 445 (670)
.+-|--|+....-.++.+.+...+++.-++++.-+..|||+....+. .++|.-.|+ ++-..|=.|+-+.+.-|+.+.
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq-k~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ-KENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888999999999999999999999999999877332 233321111 222333344444443333322
Q ss_pred hhhHhHHHHHhhhHHHHHhHH----HHHHHHhhhhhhhhhhhhh
Q 005903 446 VSSEASQEQQSMLYSAIWDME----TLIEDLKSKVSKAESKTES 485 (670)
Q Consensus 446 asaEas~eqQ~mkyseisdme----~vIEdLk~Kl~rAE~RaEs 485 (670)
.. ++|.+ .=|+||+-.+.-||-|++.
T Consensus 601 q~--------------aarrEd~~R~Ei~~LqrRlqaaE~R~ee 630 (961)
T KOG4673|consen 601 QQ--------------AARREDMFRGEIEDLQRRLQAAERRCEE 630 (961)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222 4578888888888888544
No 133
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.60 E-value=53 Score=34.83 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=10.4
Q ss_pred hhcccccccchhhhccCCC
Q 005903 618 SVQAGTHLNICRIYTRGLA 636 (670)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~ 636 (670)
.+++|...+. +|+++--.
T Consensus 386 ~l~~Gm~~~v-~i~~~~~~ 403 (423)
T TIGR01843 386 ELSPGMPVTA-DIKTGERT 403 (423)
T ss_pred ccCCCCEEEE-EEEeCCcc
Confidence 4777876653 45554443
No 134
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.55 E-value=73 Score=36.38 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHh
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (670)
+-+.|+..+++.|... + +...-.|++.|-.-..+++-+=+..+++|-.+=.++.-...-+...|+
T Consensus 366 ~ke~E~q~lr~~l~~~------~---~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 366 EKESEIQKLRNQLSAR------A---SSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHHHHH------h---ccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 5566666776666542 1 122245788886666555544456666555444444334444444444
No 135
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.35 E-value=19 Score=38.83 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccc
Q 005903 253 QVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQR 303 (670)
Q Consensus 253 qe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~R 303 (670)
-.+.+--=.|...|==|= ...+.|+-..+...+..++.|..-....
T Consensus 121 lvK~~aRl~ak~~WYeWR-----~kllegLk~~L~~~~~~l~~D~~~L~~~ 166 (312)
T smart00787 121 LVKTFARLEAKKMWYEWR-----MKLLEGLKEGLDENLEGLKEDYKLLMKE 166 (312)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666665553 3446677777777777766665444433
No 136
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.10 E-value=78 Score=36.34 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=12.0
Q ss_pred CcchhhhhHHHHHHHHH
Q 005903 422 SNTKKVGILENQLRDLE 438 (670)
Q Consensus 422 ~deEK~~~LE~QLKEa~ 438 (670)
.|.++++.++.+|...+
T Consensus 298 ~dp~~L~ele~RL~~l~ 314 (563)
T TIGR00634 298 FDPERLNEIEERLAQIK 314 (563)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 36778888888776554
No 137
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.44 E-value=93 Score=36.69 Aligned_cols=38 Identities=5% Similarity=0.106 Sum_probs=21.5
Q ss_pred HHhHHHHhhHHHHHHhHHHHHHHH---HHHHHHHHHHHHHH
Q 005903 520 RANIEKAASAKEVNHRTKLMMEMV---MQLATQRELIQKQV 557 (670)
Q Consensus 520 kA~q~ke~tlKeae~Rak~aE~lV---~KL~~ErdrLedQL 557 (670)
.|..|=.+..|-|....+-|.+.+ ..|++|+..|..++
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444677766666555554 34666666666554
No 138
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.18 E-value=75 Score=35.36 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=55.1
Q ss_pred HHHHHhhHHHHHHHHHHHhHHHHhh--------HHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 504 QSFMRDKIKILESSLNRANIEKAAS--------AKEVNHR-TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 504 L~~l~~~lKsLE~sl~kA~q~ke~t--------lKeae~R-ak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
+..+.+.+..++..+.++....... ..+++.| ..+..+-......+++.++.++.............++.+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444455555554444443331 2233334 444555666778888999999999999999999999999
Q ss_pred cCCCCceeccc
Q 005903 575 GKSSSATMYNA 585 (670)
Q Consensus 575 ~k~~~~tm~~~ 585 (670)
..-+|+.++=+
T Consensus 318 ~I~AP~dG~V~ 328 (457)
T TIGR01000 318 VIKAPEDGVLH 328 (457)
T ss_pred EEECCCCeEEE
Confidence 99999988754
No 139
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.11 E-value=89 Score=36.17 Aligned_cols=188 Identities=17% Similarity=0.229 Sum_probs=106.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHH
Q 005903 247 KLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 326 (670)
Q Consensus 247 kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Le 326 (670)
++..+++-.+-.|+.+ -+-||+.|-+...-+.-....+-+.++.+...|+.....|..-+.......+....-...+-
T Consensus 76 ~~~~ie~~L~~ae~~~--~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 76 QLPEIEEQLFEAEEYA--DKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred hhHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555553 35688888888888888888888888888888888777777777776666666655333332
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH-----HhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 005903 327 KLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ-----NANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (670)
Q Consensus 327 kl~~s~esEv~sLqkKvksLE~qLdes~eQL~-----~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKlee 401 (670)
.-..+=-+=+..|.+++..+|.+|.++..-.. .|..-+.....++..++..++.+-.=+.......-.- +.+
T Consensus 154 ~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~q---l~e 230 (560)
T PF06160_consen 154 AHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQ---LEE 230 (560)
T ss_pred HhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH---HHH
Confidence 22222134455777888888888888776432 2444444445566666666665555555444433322 222
Q ss_pred HhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHH
Q 005903 402 LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (670)
Q Consensus 402 LSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QL 441 (670)
+...=.++.++==.|..-. -++.+..++.++.++...|
T Consensus 231 L~~gy~~m~~~gy~l~~~~--i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 231 LKEGYREMEEEGYYLEHLD--IEEEIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHH
Confidence 3333333333211122111 1445555555555554443
No 140
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.79 E-value=56 Score=35.05 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHH
Q 005903 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~ 384 (670)
...+++++.+|-+++.+...+..+.+.+.+..++++..++..|..+++.
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444333
No 141
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.32 E-value=52 Score=39.84 Aligned_cols=82 Identities=27% Similarity=0.302 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 005903 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (670)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELer 411 (670)
++.++.-+.+|+.+|-.+|.-.+.+|+.+-. ++...+==+.+.+++. .+..|+++..+.++.+..+...+++++-
T Consensus 103 kda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~----al~~aee~~~~~eer~~kl~~~~qe~na 177 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNA----ALTKAEEHSGNIEERTRKLEEQLEELNA 177 (916)
T ss_pred cchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHH----HHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777776655 4444333344556654 4456777777777777777777776666
Q ss_pred Hhhhhhc
Q 005903 412 EINFLKG 418 (670)
Q Consensus 412 elkvLes 418 (670)
++--.+.
T Consensus 178 eL~rarq 184 (916)
T KOG0249|consen 178 ELQRARQ 184 (916)
T ss_pred HHHHHHH
Confidence 6654443
No 142
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=83.23 E-value=1.2e+02 Score=36.99 Aligned_cols=122 Identities=22% Similarity=0.340 Sum_probs=63.2
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhh
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (670)
+.++-.|+..-..|+..+.++...++....++.++.....++..++..++... ...|.||+-.+ .+
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~-------s~~E~ql~~~~-------e~ 660 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESN-------SLAETQLKAMK-------ES 660 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HH
Confidence 44555666666666666666666666666666666666666666666555442 23344443322 11
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhh
Q 005903 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 510 (670)
Q Consensus 448 aEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~ 510 (670)
-+..+-+-...-.++..+-.-|.-|..++.+-...-+-++.||. +|+++|......
T Consensus 661 ~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~-------~Le~el~r~~~~ 716 (769)
T PF05911_consen 661 YESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCR-------ELEEELERMKKE 716 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHH-------HHHHHHHhhhcc
Confidence 11111100001112222223333333554444444455668888 888888877543
No 143
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.93 E-value=5.2 Score=40.80 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhccCCC
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSS 578 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~k~~ 578 (670)
+|+.||..++.++..+..+.. ++.. +...+..-....+..|..+-++|..|+...+.++..+..+++..++..
T Consensus 97 ~le~el~~l~~~l~~~~~~~~---~~~~----~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN---QRTA----EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554443322 2222 222222234455666889999999999999999999888888877666
Q ss_pred CceecccC
Q 005903 579 SATMYNAG 586 (670)
Q Consensus 579 ~~tm~~~g 586 (670)
-+-+|..|
T Consensus 170 ~~~wf~~G 177 (206)
T PRK10884 170 IMQWFMYG 177 (206)
T ss_pred HHHHHHHc
Confidence 66666554
No 144
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.85 E-value=1.3e+02 Score=37.09 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerel 413 (670)
-|+.+|+.|+++|+..|-++...+..++.. |..|...+++.-.+++.-..|+..-..|+..|.---.+|+..+
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~-------ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTE-------IEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344577777777777766666655555444 4444444555445555555555566667777777777777777
Q ss_pred hhhhcCCCCcchhhhhHHH
Q 005903 414 NFLKGNNDSNTKKVGILEN 432 (670)
Q Consensus 414 kvLesrs~~deEK~~~LE~ 432 (670)
+.......-++-+...|+.
T Consensus 517 kq~q~a~~~~~~~~s~L~a 535 (1118)
T KOG1029|consen 517 KQKQSAHKETTQRKSELEA 535 (1118)
T ss_pred HHhhhhccCcchHHHHHHH
Confidence 7555544434444444444
No 145
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.83 E-value=13 Score=37.95 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNAN 361 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~ 361 (670)
++..++..+|.|+.+...+|.++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554443
No 146
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=82.73 E-value=59 Score=33.11 Aligned_cols=113 Identities=23% Similarity=0.364 Sum_probs=77.6
Q ss_pred HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 005903 318 LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (670)
Q Consensus 318 L~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAes 397 (670)
|.+|...++.|+ .|+.+...-|...-..|-.++.....|.......+.++..|...++..+..+..++..+..+..
T Consensus 62 L~GKq~iveqLe----~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~ 137 (188)
T PF05335_consen 62 LAGKQQIVEQLE----QEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQ 137 (188)
T ss_pred HHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555543 3455555555555666666666666666666666889999999999999999999998888776
Q ss_pred HHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhh
Q 005903 398 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (670)
Q Consensus 398 KleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (670)
.+.+ ....|+. -..|++.|.+||.+++.-++..+..+
T Consensus 138 el~e----------K~qLLea----Ak~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 138 ELAE----------KTQLLEA----AKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHH----------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 3333333 13589999999999998888777444
No 147
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.48 E-value=80 Score=34.43 Aligned_cols=47 Identities=4% Similarity=0.003 Sum_probs=22.7
Q ss_pred HHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 005903 505 SFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQREL 552 (670)
Q Consensus 505 ~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~Erdr 552 (670)
+.++..+..++............| ..+....++++.+-..|-..++.
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~-~~L~r~~~~~~~~y~~ll~r~~e 367 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEM-SVLQRDVENAQRAYDAAMQRYTQ 367 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445544444 33444455566555555444433
No 148
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.79 E-value=49 Score=35.91 Aligned_cols=99 Identities=22% Similarity=0.294 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhh
Q 005903 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVG 428 (670)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~ 428 (670)
||+..+..|+..+-+.+.-..+.++|.|.++.|=+ -|..+.++.+-+.-++.+-++ .++
T Consensus 40 QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e--------------~c~~lek~rqKlshdlq~Ke~-------qv~ 98 (307)
T PF10481_consen 40 QLESLEAALQKQKQKVEEEKNEYSALKRENQSLME--------------SCENLEKTRQKLSHDLQVKES-------QVN 98 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH--------------HHHHHHHHHHHhhHHHhhhHH-------HHH
Confidence 33444444445555555555577788887776643 466677777777777775555 488
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 005903 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (670)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsK 489 (670)
.||+||--++. .+.+++.=+.-+|+.++|+..-+-++...
T Consensus 99 ~lEgQl~s~Kk---------------------qie~Leqelkr~KsELErsQ~~~~~~~~s 138 (307)
T PF10481_consen 99 FLEGQLNSCKK---------------------QIEKLEQELKRCKSELERSQQAASSGDVS 138 (307)
T ss_pred HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 88888876651 24455555666778888888776666644
No 149
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.65 E-value=1e+02 Score=35.13 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=39.4
Q ss_pred HHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHH
Q 005903 316 EQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (670)
Q Consensus 316 eqL~~k~~~Lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l 385 (670)
.+|++-...++.+..+ ...+...|++-++++|.++.....++..+...+......|++++.+++-|+..-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4555545555544443 345555566666666666666666666665555555666666666665555444
No 150
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.61 E-value=46 Score=32.32 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=3.6
Q ss_pred hHHHHHHHHH
Q 005903 373 EMDNFIESLK 382 (670)
Q Consensus 373 aLerrIelLK 382 (670)
++...+.++.
T Consensus 141 ~~~~e~~~l~ 150 (191)
T PF04156_consen 141 ELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 151
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=81.51 E-value=48 Score=31.21 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=3.9
Q ss_pred hhhhhhhhh
Q 005903 474 SKVSKAESK 482 (670)
Q Consensus 474 ~Kl~rAE~R 482 (670)
..+.-++.|
T Consensus 105 ~e~~~~~~r 113 (132)
T PF07926_consen 105 KELSELEQR 113 (132)
T ss_pred HHHHHHHHH
Confidence 344444444
No 152
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=81.39 E-value=45 Score=35.69 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhc
Q 005903 251 TEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (670)
Q Consensus 251 ~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~ 330 (670)
..+-..|+++-...+-.++-+|+....-++.....+- ..+...--....+.|+.-+.+++.+-..+...-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d---------~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~ 238 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD---------PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITP 238 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3556678888888888888888888777765433221 1111111112233333333333333222322222
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005903 331 TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (670)
Q Consensus 331 s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLS 403 (670)
...+.+..++.++..++.+++.-..++..... ..+++.....+.|+.++.-|+...+.+..+++++.
T Consensus 239 ~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 239 EQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23799999999999999999887766654321 13344445566777788888888888888877776
No 153
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.94 E-value=13 Score=36.94 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=46.9
Q ss_pred HhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Q 005903 287 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (670)
Q Consensus 287 ~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (670)
-.++-..+-+|..+-++=+++..+|.... .++..+..++...+..+......+.....++..
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~------------------~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELN------------------DELQELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc------------------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554443 333344444555555555555555555555555
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 005903 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELere 412 (670)
...++..++..|+.|.+++.--.-....++.|+..+.+-|.+|=.-
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777888888888888888888888888888888877554
No 154
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=79.81 E-value=98 Score=33.77 Aligned_cols=247 Identities=19% Similarity=0.266 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 005903 339 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (670)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLes 418 (670)
+.+++..+=.+-|+.+.++....+.....-++-..++.+|+.++++-..-=++++.-......+..+.++.+ +-+
T Consensus 32 l~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-----~~~ 106 (294)
T COG1340 32 LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-----LGG 106 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----ccC
Confidence 333344444444444444444433333334455566677777777766666666665555555555555443 222
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchh
Q 005903 419 NNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNF 498 (670)
Q Consensus 419 rs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ 498 (670)
++ +..+++-+...+.-.|-.+-.-+...+ +-..|+++....++-+..+...+...+.. +++-
T Consensus 107 ~~------~~~ler~i~~Le~~~~T~~L~~e~E~~----lvq~I~~L~k~le~~~k~~e~~~~~~el~-aei~------- 168 (294)
T COG1340 107 RS------IKSLEREIERLEKKQQTSVLTPEEERE----LVQKIKELRKELEDAKKALEENEKLKELK-AEID------- 168 (294)
T ss_pred CC------HHHHHHHHHHHHHHHHhcCCChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------
Confidence 22 456666666665333333333333333 44456665555554443333333221111 1122
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhcc
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~ 575 (670)
++-.+.+.+.+++..|=...+.+...=-.+ +-++-.++..+-.-+.++...++.+|..+-....+++-+...+....
T Consensus 169 ~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 169 ELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444443332222 55566677888888889999999999999999999998888777431
Q ss_pred CCCCceecccCCCCCCccccccCCCccchhhhchHhhhhhhhhhccccccc
Q 005903 576 KSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLN 626 (670)
Q Consensus 576 k~~~~tm~~~gd~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 626 (670)
...-.++ ....-...++.|..+-.-++-|-.|-
T Consensus 249 ~~~~~~~------------------~~~~~ee~kera~ei~EKfk~GekLt 281 (294)
T COG1340 249 AKEKAAK------------------RREKREELKERAEEIYEKFKRGEKLT 281 (294)
T ss_pred HHHHHHH------------------HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 1111111 01111245667777777777776553
No 155
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.63 E-value=49 Score=35.87 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=35.6
Q ss_pred HHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 005903 357 LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (670)
Q Consensus 357 L~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelk 414 (670)
|..+++++.....++..+.+.+..+++++..-..+.+....+..++...-.++++.+.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455666666666777777766666666666666666666555555444
No 156
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.34 E-value=77 Score=32.25 Aligned_cols=130 Identities=24% Similarity=0.341 Sum_probs=66.2
Q ss_pred hhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhcc-chHHHHhhhhHHHHhhhhHHhhhccccccch
Q 005903 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAE-NSAEVLMGISKEMLGRFQIVQFNLNGSLQRE 304 (670)
Q Consensus 226 ~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~qf~L~as~~RE 304 (670)
+--.|...|.+.+.--.+|..-.-...+.-+.-+-|. .+|=-.+ ++..++.+-..++ ......|+-+--++
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL----~k~e~~e~~Lpqll~~h~eEv----r~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKAL----QKYEDTEAELPQLLQRHNEEV----RVLRERLRKSQEQE 84 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3344555555554444444444333333333333332 2222222 2344444433332 34555666666677
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 005903 305 SELKSKLGDFIEQLKAKDMVLQKLEST----KNSEVLTMKEKVKSLEEQLKESEIRLQNANAC 363 (670)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s----~esEv~sLqkKvksLE~qLdes~eQL~~A~ak 363 (670)
.++.-+++....+|-.-...+.+|+.- .=.|-..|+.++..++..+.+.+..++...-+
T Consensus 85 r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776655555555543 12445566666666666666555555544433
No 157
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.14 E-value=1.2e+02 Score=34.52 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=5.0
Q ss_pred hhhhHHHHHHH
Q 005903 426 KVGILENQLRD 436 (670)
Q Consensus 426 K~~~LE~QLKE 436 (670)
+++.|...++.
T Consensus 162 ~i~~l~~~~~~ 172 (420)
T COG4942 162 RIDALKATLKQ 172 (420)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 158
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.58 E-value=31 Score=33.49 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 005903 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (670)
Q Consensus 378 IelLKE~l~rAEsRa~tAesKleeLSeTNdELerelk 414 (670)
+..++++.....+-.....+++..+......+.++..
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~ 147 (191)
T PF04156_consen 111 LEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIR 147 (191)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 159
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.24 E-value=43 Score=31.72 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKle 400 (670)
.++...|...+..|+.++..++-.+..+.+..-....++.++...+...++++.|....+++..++|.
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~ 132 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYE 132 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777776666666665556667777777777777777777777766666554
No 160
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.23 E-value=74 Score=33.23 Aligned_cols=110 Identities=21% Similarity=0.274 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHH
Q 005903 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (670)
Q Consensus 375 errIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eq 454 (670)
+|.-+.|++.+...++.+..|...+.....++..|..+++..+.- ...|+..-.++..-.+.-...+......
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee-------a~~Le~k~~eaee~~~rL~~~~~~~~eE 76 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE-------AEELEQKRQEAEEEKQRLEEEAEMQEEE 76 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555666666666555442 2334444333332222222333333333
Q ss_pred HhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005903 455 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (670)
Q Consensus 455 Q~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~ 491 (670)
+.-+-..+......|..|.....+.+..++....+..
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335666777777777776666666666544444443
No 161
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.07 E-value=46 Score=33.72 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=72.6
Q ss_pred HHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q 005903 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (670)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (670)
...-|+--=||......|=..|-+--.+...-++.++..=+++... +.+...+..++..||..+-+.+.+.+.....-+
T Consensus 77 tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 77 TLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444444333333333332222222222 345566777888888888888888888888888
Q ss_pred hhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 005903 366 TSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (670)
Q Consensus 366 esE~EVaaLerrIelLKE~l~rAEsRa~tAe 396 (670)
+...+|+.|+..++.+++++..+|-+-++..
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999998887764
No 162
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.79 E-value=1.9e+02 Score=35.83 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=20.0
Q ss_pred HHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 005903 454 QQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (670)
Q Consensus 454 qQ~mkyseisdme~vIEdLk~Kl~rAE~R 482 (670)
+++.+-.....++.++.-++.++.--++.
T Consensus 529 ~~s~L~aa~~~ke~irq~ikdqldelskE 557 (1118)
T KOG1029|consen 529 RKSELEAARRKKELIRQAIKDQLDELSKE 557 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777788888777777765554
No 163
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.73 E-value=2.2e+02 Score=36.64 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=18.6
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccc
Q 005903 99 DLLFGILDSELREVERLLDTIHVEIVNVHH 128 (670)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~I~~~~~ 128 (670)
|.-..=|+..+..++..+..+...+..+..
T Consensus 424 ~~~r~~l~~~~~~~~~~i~~L~~~~~~~e~ 453 (1353)
T TIGR02680 424 DARRQDADRVIAQRSEQVALLRRRDDVADR 453 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666665554444
No 164
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=77.61 E-value=85 Score=33.30 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHH
Q 005903 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (670)
Q Consensus 407 dELerelkvLesrs~~deEK~~~LE~QLKEa~~QLq 442 (670)
.+++|-.+.++.. ......++..+.++..++.+++
T Consensus 135 ~~~~R~~~L~~~g-~vS~~~~~~a~~~~~~a~~~l~ 169 (346)
T PRK10476 135 RTLERLEPLLAKG-YVSAQQVDQARTAQRDAEVSLN 169 (346)
T ss_pred HHHHHHHHHHHCC-CcCHHHHHHHHHHHHHHHHHHH
Confidence 4455555544433 3333344444444444443333
No 165
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=77.29 E-value=1.9e+02 Score=35.72 Aligned_cols=147 Identities=21% Similarity=0.311 Sum_probs=92.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHH--------HHHHHHHhhhhhHHHHHHH---HH
Q 005903 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIE--------SLKESLYGAESRAESAEEK---VT 400 (670)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIe--------lLKE~l~rAEsRa~tAesK---le 400 (670)
++.++..++.+-..+|..|...+.+-++-...++.+.+.++.|++.|- .|.+.+..-.++++.|+.- ..
T Consensus 834 PE~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~ 913 (1480)
T COG3096 834 PEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQEAARFIQ 913 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999988887777777777777666666666553 2233333333333333221 12
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhh----hhhHhHHHHHhhhHHHHHhHHH----HHHHH
Q 005903 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK----VSSEASQEQQSMLYSAIWDMET----LIEDL 472 (670)
Q Consensus 401 eLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~----asaEas~eqQ~mkyseisdme~----vIEdL 472 (670)
.---|-.+|+--.++|.+ |-+.-+.|+.+...+..+.++++ +.++--+++----|+.-.+|++ +-|.|
T Consensus 914 qhG~tls~LEpia~~Lqs----DPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekL 989 (1480)
T COG3096 914 QHGNTLSKLEPIASVLQS----DPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKL 989 (1480)
T ss_pred HhcchHHhhhhHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhhHHH
Confidence 222345566777777876 55778888888877766655555 5555556655556888788774 34445
Q ss_pred hhhhhhhhhh
Q 005903 473 KSKVSKAESK 482 (670)
Q Consensus 473 k~Kl~rAE~R 482 (670)
+.++..++..
T Consensus 990 r~rL~q~eae 999 (1480)
T COG3096 990 RQRLEQAEAE 999 (1480)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 166
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.06 E-value=2.1e+02 Score=36.10 Aligned_cols=256 Identities=14% Similarity=0.165 Sum_probs=114.8
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC----C------hhHHHHHHHHHHHHHH
Q 005903 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----K------NSEVLTMKEKVKSLEE 348 (670)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s----~------esEv~sLqkKvksLE~ 348 (670)
.-.+.++..+.|.-++-+-+.+..+=...++.+...++..+.-++.+-.|+.+ . ..+-....+|-..||-
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel 307 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLEL 307 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34567888888888887777777776666666666555444433333333332 0 0111111122223333
Q ss_pred HHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhh
Q 005903 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVG 428 (670)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~ 428 (670)
+.+..+.|+.-- .+.-...-+.++.+++++...+..+...+-|...+.+...-+..-+..|+++ +-+
T Consensus 308 ~~kdlq~~i~~n-------~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~------~~~ 374 (1200)
T KOG0964|consen 308 KIKDLQDQITGN-------EQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK------QRD 374 (1200)
T ss_pred hhHHHHHHhhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH------HHH
Confidence 333333332211 1112233344555666666666666666666666666666665555555553 123
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHH
Q 005903 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMR 508 (670)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~ 508 (670)
++-+|=+-+. =.+.++.|. -..+++.+....|-+.+.--..--...+.+++...-.-+.=-+|+..+...+
T Consensus 375 l~~Kqgr~sq------Fssk~eRDk---wir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~ 445 (1200)
T KOG0964|consen 375 LLAKQGRYSQ------FSSKEERDK---WIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETK 445 (1200)
T ss_pred HHHhhccccc------cCcHHHHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 3333322221 012223332 2344555555555544433333233323333333300000004444444444
Q ss_pred hhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005903 509 DKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (670)
Q Consensus 509 ~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (670)
++|..+-+ .....+..+-.....|... -|==.+|...++.+++.|+.-
T Consensus 446 ~r~~~~~~---~~~~~k~~~del~~~Rk~l-WREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 446 GRMEEFDA---ENTELKRELDELQDKRKEL-WREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44443322 2233333333344444433 333456666666666665543
No 167
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.50 E-value=1.2e+02 Score=32.78 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHh
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (670)
.++.++..+......+|..+. ++.....--.+++.+|+..-+..+.+...+. +-+.++....
T Consensus 166 ~l~~~~e~l~al~~e~e~~~~-----------~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~-~qka~a~a~a 227 (265)
T COG3883 166 ALEDKLETLVALQNELETQLN-----------SLNSQKAEKNALIAALAAKEASALGEKAALE-EQKALAEAAA 227 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence 455555555555555554443 3334444445666666666666666666665 4444444433
No 168
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=76.22 E-value=1.8e+02 Score=35.14 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAe 396 (670)
.+...+|+++.-||.+-+....|..-.....++.-++|.+|+-.|+.-..++--+|+-++.-.
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqel 166 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQEL 166 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 667789999999999999999998888888888888999999999999999988888777643
No 169
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=75.85 E-value=29 Score=31.22 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkv 415 (670)
.|..++..||.-++.--..... ...++..|+.|..+-.+=..++..++..|..+..+|.|..+.++.
T Consensus 12 rL~~aid~LE~~v~~r~~~~~~-----------~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 12 RLEAAIDRLEKAVDRRLERDRK-----------RDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555443333222 245666667777777777777777777888888888888887763
No 170
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.67 E-value=1e+02 Score=31.31 Aligned_cols=53 Identities=28% Similarity=0.329 Sum_probs=29.4
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005903 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (670)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~ 358 (670)
++...|+.-+.++..++...+++-..-..|...|.+-++.++.+..+...+|.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555554444344555555555555555555555443
No 171
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.59 E-value=65 Score=30.68 Aligned_cols=98 Identities=17% Similarity=0.301 Sum_probs=59.4
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 005903 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (670)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak 537 (670)
+-+.|++++.=+--|+..+.+.+..-+.+...++-|+..|-++ +.....+..|+..+.....+-+.++.=+|-+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4567777777777777777777777777777777666555433 334444555555555555555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHH
Q 005903 538 LMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (670)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQL~s~keenK~L~ek 570 (670)
+++-|+..|.-+|.=|+...+.
T Consensus 97 -----------~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 97 -----------EVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666655443
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.08 E-value=24 Score=40.38 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHhhhHHhhHHHHHHH
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMV-------MQLATQRELIQKQVYSLTSENKLLVEKL 571 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV-------~KL~~ErdrLedQL~s~keenK~L~ekL 571 (670)
.|..+++.++..-+..|..+.+.+.+-.+-.|+...-.+.=+.++ .||.+..+++..++.+.-++..-|.+.+
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333333322222222222 2333344444444444444444444444
Q ss_pred hh
Q 005903 572 QY 573 (670)
Q Consensus 572 d~ 573 (670)
.+
T Consensus 445 rD 446 (493)
T KOG0804|consen 445 RD 446 (493)
T ss_pred Hh
Confidence 43
No 173
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.54 E-value=1.4e+02 Score=32.21 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=20.2
Q ss_pred hhhhHhhHHHHHHHHHHHHHhhHhhhhhhh
Q 005903 150 LHDCEGSLKESQEHVSELKMQSAKFQRVLS 179 (670)
Q Consensus 150 L~~~~~sLkq~qe~~~eik~qsa~f~r~~~ 179 (670)
|.-++-+-+.+...|++-|.-...|+..+.
T Consensus 70 Lely~~~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666667777777777777777776663
No 174
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.25 E-value=1.5e+02 Score=35.32 Aligned_cols=138 Identities=12% Similarity=0.133 Sum_probs=76.9
Q ss_pred hhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhH------HHHhhhhHHhhhccccccchhHHHHHHH
Q 005903 239 QNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISK------EMLGRFQIVQFNLNGSLQRESELKSKLG 312 (670)
Q Consensus 239 ~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~sk------el~gkLq~~qf~L~as~~REsel~sKL~ 312 (670)
.++..+..|...+.+-..|+++-...+..++-.+|++.+-++-..+ +....++.+ .+++.+
T Consensus 253 Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~-----------~~l~~q-- 319 (726)
T PRK09841 253 YLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQI-----------VNVDNQ-- 319 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----------HHHHHH--
Confidence 4556666666666666777777777777777777777777664322 111111111 112222
Q ss_pred hHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhH
Q 005903 313 DFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 392 (670)
Q Consensus 313 ~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa 392 (670)
+.++..+...+...-....+.+.+|+.+..+|+.++...+.++. .+...++....|+.++.-++.-.
T Consensus 320 --l~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~-----------~~p~~e~~~~~L~R~~~~~~~lY 386 (726)
T PRK09841 320 --LNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVS-----------AMPSTQQEVLRLSRDVEAGRAVY 386 (726)
T ss_pred --HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333332233578888898888888777666554443 23344555555666666666666
Q ss_pred HHHHHHHHHH
Q 005903 393 ESAEEKVTQL 402 (670)
Q Consensus 393 ~tAesKleeL 402 (670)
.....|.+++
T Consensus 387 ~~lL~r~~e~ 396 (726)
T PRK09841 387 LQLLNRQQEL 396 (726)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 175
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.24 E-value=53 Score=34.31 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=49.0
Q ss_pred HHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhccCC
Q 005903 515 ESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (670)
Q Consensus 515 E~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~k~ 577 (670)
..-.+...+++++. +.+|..=...+|..+.++..++++..+.+..+.++|.-|-+..+...++
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555 6666777888999999999999999999999999999998888877655
No 176
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=72.85 E-value=95 Score=34.07 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=12.7
Q ss_pred HHHHHHhhhhcccceecccc
Q 005903 115 LLDTIHVEIVNVHHKISSCK 134 (670)
Q Consensus 115 ~~~~lq~~I~~~~~~~~s~~ 134 (670)
-++.++.++..|+.++.++.
T Consensus 33 ~I~~~~l~~~~A~~kF~~~~ 52 (388)
T PF04912_consen 33 DIERSRLNPDEARSKFKGAR 52 (388)
T ss_pred chhhcCCCHHHHHHHhCcCc
Confidence 36666667777777665554
No 177
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=71.38 E-value=2.5e+02 Score=34.25 Aligned_cols=350 Identities=20% Similarity=0.243 Sum_probs=168.7
Q ss_pred cchHHHHHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccch--------HHHH
Q 005903 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENS--------AEVL 279 (670)
Q Consensus 208 qt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa--------~EvL 279 (670)
+|.+-||--++=|. ...| .|=-+|.+--+-.++|.-+-+++-+ .+. ...+.|.|..|.-+. ..++
T Consensus 113 k~IEaqrKaIqELQ--f~NE-~lSlKLee~i~en~dL~k~nnaTR~-lCN---lLKeT~~rsaEK~~~yE~EREET~qly 185 (786)
T PF05483_consen 113 KIIEAQRKAIQELQ--FENE-KLSLKLEEEIQENKDLRKENNATRH-LCN---LLKETCQRSAEKMKKYEYEREETRQLY 185 (786)
T ss_pred HHHHHHHHHHHHHH--Hhhh-HHhHHHHHHHhhHHHHHHhhhHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555443 3332 0112333433445566666555544 222 244455555544333 3333
Q ss_pred hhhh---HHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 005903 280 MGIS---KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (670)
Q Consensus 280 ~g~s---kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (670)
++.+ .-|+..+++..+.--++. -|+..||+...++...-+...++=-..++.+|.-|+-+...=|+.+++....
T Consensus 186 ~~l~~niekMi~aFEeLR~qAEn~r---~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~ 262 (786)
T PF05483_consen 186 MDLNENIEKMIAAFEELRVQAENDR---QEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLL 262 (786)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3333 345556666555433333 2566788888888876655555444445667777776666666666666555
Q ss_pred HHHhHhhH---hh-----------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH-------hh-
Q 005903 357 LQNANACF---QT-----------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE-------IN- 414 (670)
Q Consensus 357 L~~A~akl---Ee-----------sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELere-------lk- 414 (670)
|+...... ++ +..+.-++...+.+.|-.+-++++--..-+..+..++++-.++.++ ++
T Consensus 263 l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk 342 (786)
T PF05483_consen 263 LQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNK 342 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 54443222 11 1224445555555555555555443333333333333333333332 11
Q ss_pred -----------------hhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhh
Q 005903 415 -----------------FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 477 (670)
Q Consensus 415 -----------------vLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~ 477 (670)
.|++.-...-.|+.-+|.||+-.-.-|+.--+-.+..-. ...... .-++.|+..|.
T Consensus 343 ~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk-----~k~~ke--~eleeL~~~L~ 415 (786)
T PF05483_consen 343 AKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTK-----QKNNKE--VELEELKKILA 415 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHH-----HhhhhH--HHHHHHHHHHH
Confidence 111111112334444555555444333332222222221 111122 22555555555
Q ss_pred hhhhhh---hhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHH----------HHHH
Q 005903 478 KAESKT---ESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM----------EMVM 544 (670)
Q Consensus 478 rAE~Ra---EsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE----------~lV~ 544 (670)
.....+ ...|.-+--|-.++-+|.-=|......+-+|+..+..+-..+-.|.+......+-++ -...
T Consensus 416 e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~n 495 (786)
T PF05483_consen 416 EKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCN 495 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444211 122222222333344555556666777777777777777777777555554433333 2345
Q ss_pred HHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 545 QLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 545 KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
+|+.|...+..+.+..+-+.|.+.+.+...
T Consensus 496 kLslEkk~laQE~~~~~~elKk~qedi~~~ 525 (786)
T PF05483_consen 496 KLSLEKKQLAQETSDMALELKKQQEDINNS 525 (786)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 666666666666666666666555544443
No 178
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=71.10 E-value=1.4e+02 Score=31.16 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHH
Q 005903 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (670)
Q Consensus 377 rIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLq 442 (670)
.+..+..++..++..+..|..++.. +..+++|-.+.++.. .....-++..+.++..++.+++
T Consensus 102 ~~~~~~~~i~~~~~~~~~a~~~l~~---a~~~~~r~~~L~~~g-~is~~~~~~a~~~~~~a~~~l~ 163 (334)
T TIGR00998 102 TVQQLQAKVESLKIKLEQAREKLLQ---AELDLRRRVPLFKKG-LISREELDHARKALLSAKAALN 163 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHCC-CcCHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444332 344555555444443 3232333333444444443333
No 179
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.94 E-value=72 Score=34.47 Aligned_cols=129 Identities=18% Similarity=0.194 Sum_probs=72.0
Q ss_pred hhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005903 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (670)
Q Consensus 482 RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (670)
|.+.+=.|+. +-++++..+...|..++..+.+.+..-+..++.+......++.--.. ++..+..+....
T Consensus 2 rl~~GL~KL~-------et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~----~~~ee~~~~~~~ 70 (344)
T PF12777_consen 2 RLENGLDKLK-------ETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAI----VEEEEEEAEKQA 70 (344)
T ss_dssp -HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH
T ss_pred hHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4455555666 77778888888999999999999888888888887655444332111 222222222222
Q ss_pred HhhHHHHHHHhhccCCCCceecccCCCCCCccccccCCCccchhhhchHhhhhhhhhhcccccccchhhhccCCCchHHH
Q 005903 562 SENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFV 641 (670)
Q Consensus 562 eenK~L~ekLd~T~k~~~~tm~~~gd~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (670)
.+...+...++.- + +...-.+++|..-.+++.. .|++-+|-|.+ -|..|
T Consensus 71 ~ei~~~~~~a~~~------------------L---------~~a~P~L~~A~~al~~l~k-~di~Eiks~~~---PP~~V 119 (344)
T PF12777_consen 71 KEIEEIKEEAEEE------------------L---------AEAEPALEEAQEALKSLDK-SDISEIKSYAN---PPEAV 119 (344)
T ss_dssp HHHCCHHHHHHHH------------------H---------HHHHHHHHHHHHHHHCS-H-HHHHHHHHSSS-----HHH
T ss_pred HHHHHHHHHHHHH------------------H---------HHHHHHHHHHHHHHHhCCH-HHHHHHHhhCC---CcHHH
Confidence 2222222222210 0 0111234445544556655 47777777765 48889
Q ss_pred HHHHHHHHHHH
Q 005903 642 KKVIAMMMILL 652 (670)
Q Consensus 642 ~~~~~~~~~~~ 652 (670)
+.|+..++|||
T Consensus 120 ~~V~~aV~iLl 130 (344)
T PF12777_consen 120 KLVMEAVCILL 130 (344)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhhHH
Confidence 98888877765
No 180
>PRK11281 hypothetical protein; Provisional
Probab=70.85 E-value=3e+02 Score=35.05 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=47.2
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccc
Q 005903 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSL 301 (670)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~ 301 (670)
|..+|...+++....+.....+...+..+.+..|--+....+.+.|+|.+...|++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~ 183 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5555555566666677778888889999999999999999999999999999998844
No 181
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.60 E-value=86 Score=32.74 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=72.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH---------HHHHHHHhHHHHhh---------------
Q 005903 473 KSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---------ESSLNRANIEKAAS--------------- 528 (670)
Q Consensus 473 k~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsL---------E~sl~kA~q~ke~t--------------- 528 (670)
+.-..+-..|+++.|.||. .|.-||..|+..++.. -...-+....|-.|
T Consensus 18 ~dai~~v~~r~dSve~KIs-------kLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMe 90 (218)
T KOG1655|consen 18 QDAIDSVNKRSDSVEKKIS-------KLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNME 90 (218)
T ss_pred HHHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 3444566788889999998 8888888887766532 11111111111122
Q ss_pred --------HHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHhhhHHhhHHHHHHHhhccCCCCceecccCCCCCCc
Q 005903 529 --------AKEVNHRTKLMMEMVMQLATQ--------RELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKE 592 (670)
Q Consensus 529 --------lKeae~Rak~aE~lV~KL~~E--------rdrLedQL~s~keenK~L~ekLd~T~k~~~~tm~~~gd~~~~~ 592 (670)
+|+.-.--..+.+.+.++..+ +++|+|++.-+.+....|.+-|-.+ |+-++-++-+
T Consensus 91 Qa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~--------y~~peide~d 162 (218)
T KOG1655|consen 91 QANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRN--------YNTPDIDEAD 162 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cCCCCcCHHH
Confidence 888888778888888888764 7899999999999998888888764 6666655444
Q ss_pred c
Q 005903 593 L 593 (670)
Q Consensus 593 ~ 593 (670)
+
T Consensus 163 L 163 (218)
T KOG1655|consen 163 L 163 (218)
T ss_pred H
Confidence 3
No 182
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.24 E-value=76 Score=34.37 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 005903 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (670)
Q Consensus 374 LerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELere 412 (670)
.-+.+.-|+++++..-.--++-..-.-+|.++||-|+|.
T Consensus 89 ~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 89 FYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 334455555555555444455555566677777777764
No 183
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.80 E-value=42 Score=33.39 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=26.0
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH---HH
Q 005903 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT---KL 538 (670)
Q Consensus 462 isdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Ra---k~ 538 (670)
+..+...+-.|+.++..+-..-.....+++-++..+-+|..++.....++..|+........+-...-.++..+. ..
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555444444444455566555556566666666666666555544443333222222222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHHHHH
Q 005903 539 MMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (670)
Q Consensus 539 aE~lV~KL~~ErdrLedQL~s~keenK~L~e 569 (670)
+.|=..-|+.+..-+++++..+..+|+.|++
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333344444444444455555555444
No 184
>PF15294 Leu_zip: Leucine zipper
Probab=69.69 E-value=71 Score=34.53 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=60.5
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc-------CC--CCcchhhhhHHHHHHHHHHH
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG-------NN--DSNTKKVGILENQLRDLEIQ 440 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLes-------rs--~~deEK~~~LE~QLKEa~~Q 440 (670)
..+-++..|..|.++-.+..+|+.+.+..|...-+-...++..++.|+. +. ......+.-||.++.-++.+
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 4456888999999999999999999999999999999999999998887 21 22345567788888888777
Q ss_pred HHHh
Q 005903 441 LQQA 444 (670)
Q Consensus 441 LqhA 444 (670)
++.+
T Consensus 206 ~ek~ 209 (278)
T PF15294_consen 206 LEKA 209 (278)
T ss_pred HHHH
Confidence 7766
No 185
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=69.55 E-value=66 Score=30.99 Aligned_cols=84 Identities=15% Similarity=0.317 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 005903 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (670)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvL 416 (670)
++|.+-+.++-+||+...+.|..|+.. |..||+-|-.++++..+-......+...+......+...++.+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkh----------LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKH----------LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467788888888888888888888766 4567777777777777777777777777777777777777766
Q ss_pred hcCCCCcchhhhhHHHHHHHH
Q 005903 417 KGNNDSNTKKVGILENQLRDL 437 (670)
Q Consensus 417 esrs~~deEK~~~LE~QLKEa 437 (670)
... +..||..+.+.
T Consensus 109 ~~~-------V~~Le~ki~~i 122 (126)
T PF07889_consen 109 QQM-------VEGLEGKIDEI 122 (126)
T ss_pred HHH-------HHHHHHHHHHH
Confidence 663 66666666554
No 186
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=69.25 E-value=3.3e+02 Score=34.79 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=21.0
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhHhHHH
Q 005903 424 TKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (670)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~asaEas~e 453 (670)
++|++.+-.|-..++.|++.....-...++
T Consensus 278 t~~~n~l~~~~~~~~~~l~~~~q~~~~i~e 307 (1109)
T PRK10929 278 AQRMDLIASQQRQAASQTLQVRQALNTLRE 307 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888877777777665555554
No 187
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.90 E-value=1.8e+02 Score=31.56 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHH
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~ 386 (670)
.|+-.+.++++..|+.+++...++....+.+-..+.+-+.|..+|..++.+|.
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555444444444444444444444444444443
No 188
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.76 E-value=1e+02 Score=31.24 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerel 413 (670)
.++.++...-..+-+..+..+.++....+.....+++++.+++.|-.|++........-+.....+..+...+..++.++
T Consensus 96 ~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 96 NKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444445555555555555555445557777777777777777654444444444444444433333344333
Q ss_pred h
Q 005903 414 N 414 (670)
Q Consensus 414 k 414 (670)
.
T Consensus 176 ~ 176 (190)
T PF05266_consen 176 E 176 (190)
T ss_pred H
Confidence 3
No 189
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=68.58 E-value=62 Score=35.22 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdE 408 (670)
...+..+++++..|..+++.++.++..-....... -..+++..+.+..+-.++.+++.|++.+.+|......+-..
T Consensus 87 ~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~ 166 (301)
T PF06120_consen 87 KRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLND 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888888888877776554422111111 23466788888888888999999999988888877766555
Q ss_pred HHHHh
Q 005903 409 LSEEI 413 (670)
Q Consensus 409 Lerel 413 (670)
+.+.+
T Consensus 167 ~~~~~ 171 (301)
T PF06120_consen 167 LTEQR 171 (301)
T ss_pred HHHHH
Confidence 44443
No 190
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=68.48 E-value=1.2e+02 Score=29.56 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=63.0
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHhhHhhhHHHHH
Q 005903 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR--------------LQNANACFQTSQEQLN 372 (670)
Q Consensus 307 l~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQ--------------L~~A~aklEesE~EVa 372 (670)
++..+.....||..++..=+-||- -++-.|+-...++-+.+++=+.. |.+.+.++-....+..
T Consensus 18 lk~~l~k~~~ql~~ke~lge~L~~---iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 18 LKHQLAKLEEQLRQKEELGEGLHL---IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665554444443 23333333333333333333222 3444555555566777
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 005903 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (670)
Q Consensus 373 aLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLes 418 (670)
.+...|...++.+.+....+..+......+...|..+......+..
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~ 140 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGV 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7777777777777777777777777777777777777666665544
No 191
>PRK11519 tyrosine kinase; Provisional
Probab=68.32 E-value=1.1e+02 Score=36.16 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=39.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005903 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (670)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLS 403 (670)
..+.+.++..+...|+.++...+.++.. +...++.+..|+.++.-++.-.....+|.+++.
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~l~~~~~~-----------lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 337 EHPAYRTLLEKRKALEDEKAKLNGRVTA-----------MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888877777777666655544332 334455666677777777777777777766654
No 192
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.78 E-value=2.1e+02 Score=31.97 Aligned_cols=21 Identities=10% Similarity=0.310 Sum_probs=9.1
Q ss_pred HHhHHHHHHHHhhhhhhhhhh
Q 005903 462 IWDMETLIEDLKSKVSKAESK 482 (670)
Q Consensus 462 isdme~vIEdLk~Kl~rAE~R 482 (670)
++++..-+..+++.+..++.+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~ 258 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQ 258 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 193
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.64 E-value=1.2e+02 Score=29.01 Aligned_cols=67 Identities=28% Similarity=0.376 Sum_probs=36.2
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhh
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 445 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~ 445 (670)
.+.|..++..+.-+++++.+.+..-..+...+-.++..|+++....+ ++..|+.++++.+...+-+-
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~-----------~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK-----------EVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555556665555543332 45556666666654444443
No 194
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.47 E-value=1.6e+02 Score=30.67 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 005903 427 VGILENQLRDLEIQLQQAK 445 (670)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~ 445 (670)
+..||.++.+.+.+.+..+
T Consensus 122 ~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 122 LAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555666666555554444
No 195
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.17 E-value=81 Score=30.91 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH---HHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005903 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKV 399 (670)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKE~l~rAEsRa~tAesKl 399 (670)
++.....++..++.+++.+..||..++..++.... .+.+|...|+.|+.+...+....+.-....
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777888888888877777766544 667778888888888776665555444333
No 196
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.15 E-value=1.7e+02 Score=35.33 Aligned_cols=116 Identities=25% Similarity=0.338 Sum_probs=83.3
Q ss_pred ccchHHHHHHHH--HHH-HHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhh
Q 005903 207 MKNADQQRHILR--MLE-KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGIS 283 (670)
Q Consensus 207 mqt~eqqR~iLr--MLe-kSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s 283 (670)
.+.--|--.+|| -++ .-+|+ -.+++...-....-+.--.+|....+++..+.+.++.+-+|+-+|..--+.|+--.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar-~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAR-EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455565 222 33333 35677776666666666778899999999999999999999999999999999988
Q ss_pred HHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHH
Q 005903 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 326 (670)
Q Consensus 284 kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Le 326 (670)
+.++.+++ ..+-....-|.+.+..|+....++.+-...++
T Consensus 617 ~~vl~~l~---~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 617 DRVLQLLN---SQLPVLSEAEREFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHh---ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775 44555666778888888887777654433333
No 197
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.96 E-value=30 Score=29.52 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhh
Q 005903 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES 390 (670)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEs 390 (670)
.+.++|..+......+..++.+++....+|...|..|+.+++...+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666666667777777777777777665544
No 198
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=65.61 E-value=33 Score=30.93 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=51.3
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHH
Q 005903 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEM 286 (670)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel 286 (670)
++++...+.+...-.+...++..++.+..|+-.-...-.++|++....+.|....+-+
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L 64 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKL 64 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4677788888888889999999999999999999999999999999999998886654
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.53 E-value=1.1e+02 Score=35.43 Aligned_cols=30 Identities=33% Similarity=0.307 Sum_probs=15.8
Q ss_pred cccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 005903 493 LSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (670)
Q Consensus 493 Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~ 522 (670)
+.|.|.-|.+.+.+..++++.++..+.++.
T Consensus 401 ~~E~n~~l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 401 EREENKKLIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555554444433
No 200
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=65.20 E-value=69 Score=32.27 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=58.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 005903 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (670)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELer 411 (670)
+......++.++..|..++......+. .++..|+..+..-...++|.. ...++..|.+...++..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~--------------~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIE--------------ELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKK 124 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556666666666666666555544444 444445555555555566655 67788888888888888
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHH
Q 005903 412 EINFLKGNNDSNTKKVGILENQLRDLE 438 (670)
Q Consensus 412 elkvLesrs~~deEK~~~LE~QLKEa~ 438 (670)
++..+... |-+++..+...+..++
T Consensus 125 el~~~~~~---Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 125 ELEKYSEN---DPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 88855554 5677777777666654
No 201
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.82 E-value=2.2e+02 Score=31.10 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHH
Q 005903 392 AESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIED 471 (670)
Q Consensus 392 a~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEd 471 (670)
..++...+-+.-+..-|++.++. + .+..+|.++|.+....|.-+.-.+..+++|.--|..-.+-+.+.+
T Consensus 29 f~~~reEl~EFQegSrE~Eaele---s-------qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le- 97 (333)
T KOG1853|consen 29 FLQMREELNEFQEGSREIEAELE---S-------QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE- 97 (333)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444444445455555554433 1 356666677766666666666666666655555555555444444
Q ss_pred Hhhhhhhhh
Q 005903 472 LKSKVSKAE 480 (670)
Q Consensus 472 Lk~Kl~rAE 480 (670)
.++++.-
T Consensus 98 --ddlsqt~ 104 (333)
T KOG1853|consen 98 --DDLSQTH 104 (333)
T ss_pred --HHHHHHH
Confidence 5555443
No 202
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=64.41 E-value=2.1e+02 Score=30.94 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=57.3
Q ss_pred hhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHH-----------------HHHHHHHHHHH
Q 005903 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM-----------------EMVMQLATQRE 551 (670)
Q Consensus 489 Kc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE-----------------~lV~KL~~Erd 551 (670)
+|..++++-.+|...|..|..+.+..+..+.+.|+.=..|=+|++.-++-+. ..+..+..|+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6888888999999999999999999999999999988888555554444333 33445555555
Q ss_pred HHHHHHhhhHHhhHHHH
Q 005903 552 LIQKQVYSLTSENKLLV 568 (670)
Q Consensus 552 rLedQL~s~keenK~L~ 568 (670)
.+..++-..+.+...|.
T Consensus 283 ~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544443
No 203
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=63.14 E-value=63 Score=33.18 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=59.6
Q ss_pred hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 005903 322 DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (670)
Q Consensus 322 ~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKlee 401 (670)
+.-|+.+.-.+-+++..+-+-|-.+|+.+|..++++.+--..+.+.++.-.++.+.+.-+|.+|-.-+.+++.-..=++-
T Consensus 60 ekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 60 GNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455555556788999999999999999999999888666666555544555555555555555555555544444444
Q ss_pred HhhhhHHHHHH
Q 005903 402 LTDTNLELSEE 412 (670)
Q Consensus 402 LSeTNdELere 412 (670)
--+|-|||++-
T Consensus 140 ~~~~~~~~~~~ 150 (189)
T TIGR02132 140 QQKTQDELKET 150 (189)
T ss_pred CccchhHHHHH
Confidence 44555555554
No 204
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=62.93 E-value=1.3e+02 Score=31.78 Aligned_cols=36 Identities=6% Similarity=-0.137 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhHHhhHHHHHHHhhccCCCCceec
Q 005903 548 TQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMY 583 (670)
Q Consensus 548 ~ErdrLedQL~s~keenK~L~ekLd~T~k~~~~tm~ 583 (670)
.+++.++.++...+.........++.+..-+|+.||
T Consensus 178 ~~~~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~ 213 (331)
T PRK03598 178 QDIAQAKASLAQAQAALAQAELNLQDTELIAPSDGT 213 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCeE
Confidence 456677777888888888888888888888888875
No 205
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.87 E-value=98 Score=28.28 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHH
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (670)
..++..|.++++..+..|.+..+.|+.++.......+.
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999888888888888888888776665544
No 206
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.86 E-value=1e+02 Score=26.78 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-------------------------HHHHHHhHHHHHHHHHHHHHHHHHH
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-------------------------AKEVNHRTKLMMEMVMQLATQRELI 553 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t-------------------------lKeae~Rak~aE~lV~KL~~ErdrL 553 (670)
+|..++..+..++..|+..+..+....++- .+.+..+.+.++.-+.+|...+..+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665554433332 5666666666666666666666666
Q ss_pred HHHHhhhHHhhH
Q 005903 554 QKQVYSLTSENK 565 (670)
Q Consensus 554 edQL~s~keenK 565 (670)
..++..++..++
T Consensus 89 ~~~l~~~~~~l~ 100 (106)
T PF01920_consen 89 EKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
No 207
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=62.75 E-value=4.6e+02 Score=34.14 Aligned_cols=128 Identities=21% Similarity=0.207 Sum_probs=80.4
Q ss_pred HHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHH
Q 005903 143 MEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEK 222 (670)
Q Consensus 143 ~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLek 222 (670)
|.++.........++....-.+...++..-.++|.++...+-.. -+++...=++.
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~-------------------------e~k~~~~~~~~ 875 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRN-------------------------ELKEEKQKIER 875 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHH
Confidence 44557777777888888888888889989999999887663222 13444555677
Q ss_pred HhhhhhhHHHhHHHHhhhHHHHHhhhhhhh----HHHHHHHHHHHHHHHHHHhc---cchHHHHhhhhHHHHhhhhHHhh
Q 005903 223 SLARELDLEKKISELNQNEEQLKLKLHHTE----QVAFRMEEAAEVVWGRFLEA---ENSAEVLMGISKEMLGRFQIVQF 295 (670)
Q Consensus 223 Sla~eldLEkkL~~s~~~eeeLk~kL~~~e----qe~~~lEE~~~~~~er~~EA---ENa~EvL~g~skel~gkLq~~qf 295 (670)
+|++---||..+++.++-.-.+..++.... ..+..++++.++...-..++ +=.++-.+...++....|+.+++
T Consensus 876 ~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~ 955 (1294)
T KOG0962|consen 876 SLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYK 955 (1294)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887775555544444333 34455555555444433332 22223334555677777777665
No 208
>smart00338 BRLZ basic region leucin zipper.
Probab=62.32 E-value=43 Score=27.66 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=40.9
Q ss_pred HHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 005903 516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (670)
Q Consensus 516 ~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (670)
.+..+.-+++..|+.+++.+....+.-...|..+++.|..++..++..+
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677889999999999999999988888888888888888887665
No 209
>PF15456 Uds1: Up-regulated During Septation
Probab=62.26 E-value=1.1e+02 Score=29.17 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH------HhHhh------------------HhhhHHHHHhHHHHHHHHHHHHHh
Q 005903 332 KNSEVLTMKEKVKSLEEQLKESEIRLQ------NANAC------------------FQTSQEQLNEMDNFIESLKESLYG 387 (670)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~------~A~ak------------------lEesE~EVaaLerrIelLKE~l~r 387 (670)
+-+||.+|.+.++.|...++-....+. +|-.+ ....+++++..+++|+++-.++.+
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456677777777766666665554432 12111 222377999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhh
Q 005903 388 AESRAESAEEKVTQLTDTN 406 (670)
Q Consensus 388 AEsRa~tAesKleeLSeTN 406 (670)
+|.|+.....++=+=+-+.
T Consensus 100 le~R~~~~~~rLLeH~Aav 118 (124)
T PF15456_consen 100 LENRLAEVRQRLLEHTAAV 118 (124)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998888875544433
No 210
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=62.15 E-value=3.2e+02 Score=32.16 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (670)
..|+..++|+..||.+-...-...+-++.++|
T Consensus 309 qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLE 340 (518)
T PF10212_consen 309 QQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLE 340 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888776665543333344444
No 211
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=62.06 E-value=1.9e+02 Score=29.45 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHh
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (670)
+..++....-....|.+|...+.+|+.+|...+-+-..|.-..+
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666677777777666666665554444
No 212
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.32 E-value=1.1e+02 Score=35.06 Aligned_cols=73 Identities=29% Similarity=0.317 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhh
Q 005903 395 AEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 474 (670)
Q Consensus 395 AesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~ 474 (670)
-+...+.+-+--..++|+++.|+.+.+ .---...||++.+-++ |++.. +.+-+.-|+.-|++||.
T Consensus 105 leqertq~qq~~e~~erEv~~l~~lls-r~~~~~~Lenem~ka~----------Ed~eK----lrelv~pmekeI~elk~ 169 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLS-RGQYQLDLENEMDKAK----------EDEEK----LRELVTPMEKEINELKK 169 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHH----------hhHHH----HHHHHhhHHHHHHHHHH
Confidence 344455555566677888877776532 0013567888877665 45554 56678899999999999
Q ss_pred hhhhhhhh
Q 005903 475 KVSKAESK 482 (670)
Q Consensus 475 Kl~rAE~R 482 (670)
|+.+||.|
T Consensus 170 kl~~aE~~ 177 (542)
T KOG0993|consen 170 KLAKAEQR 177 (542)
T ss_pred HHHhHHHH
Confidence 99999988
No 213
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.61 E-value=1.2e+02 Score=27.42 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=32.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHH
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (670)
...++.|.++++.-+.++....+.++.++..++.+.+.
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888999999999999999999988888777654
No 214
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=59.33 E-value=1.7e+02 Score=32.54 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhhhHHH-----HHhHHHHHHHH------HHHHHhhhhhHHHHHHHHHHHhhhhHHH
Q 005903 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQ-----LNEMDNFIESL------KESLYGAESRAESAEEKVTQLTDTNLEL 409 (670)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~E-----VaaLerrIelL------KE~l~rAEsRa~tAesKleeLSeTNdEL 409 (670)
-++...+.+++....++..+++.++..++. ..+++|+-++. .++++.|..-...|...+.... ...
T Consensus 98 a~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~---~~~ 174 (352)
T COG1566 98 AALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ---AAQ 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH---HHH
Confidence 344444444444444444444444443332 33677777777 5666777776666666665554 334
Q ss_pred HHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHH
Q 005903 410 SEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (670)
Q Consensus 410 erelkvLesrs~~deEK~~~LE~QLKEa~~QLqh 443 (670)
+..+..|.+.-......+..++.+++.++..|+.
T Consensus 175 ~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~ 208 (352)
T COG1566 175 KQNLALLESEVSGAQAQVASAEAALDQAKLDLER 208 (352)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhC
Confidence 4455555555444445555555555555555544
No 215
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=59.23 E-value=4.8e+02 Score=33.28 Aligned_cols=42 Identities=7% Similarity=-0.024 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhcc
Q 005903 534 HRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (670)
Q Consensus 534 ~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~ 575 (670)
++.+-...++.-=..+..||+..+.-+++.|+.....+..++
T Consensus 488 ~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~ 529 (1195)
T KOG4643|consen 488 NQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLS 529 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455666666666667777776655555543
No 216
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.82 E-value=3.4e+02 Score=31.37 Aligned_cols=165 Identities=23% Similarity=0.333 Sum_probs=90.8
Q ss_pred HhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhh
Q 005903 402 LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAES 481 (670)
Q Consensus 402 LSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~ 481 (670)
++--...|++..+-|++..-.+-+| |=+-+.+.+--++.-+..-.+-++|+..+-++|.-+.++..|++.=+-++.+
T Consensus 221 l~llv~tLee~~~~LktqIV~sPeK---L~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~ 297 (446)
T KOG4438|consen 221 LKLLVVTLEENANCLKTQIVQSPEK---LKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISS 297 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666666654333333 2233444444444444444445566666778888888888888877777777
Q ss_pred hh---hhhhhhhhhcccchhhHHHHHHHHHhhH---HHHHHHHHHH---hHHHHhh------------------------
Q 005903 482 KT---ESVEEQCIVLSEDNFELKNKQSFMRDKI---KILESSLNRA---NIEKAAS------------------------ 528 (670)
Q Consensus 482 Ra---EsaEsKc~~Lse~N~ELeEEL~~l~~~l---KsLE~sl~kA---~q~ke~t------------------------ 528 (670)
-. ++.|.+.++| .+|++|+.........+ +-.|+...+- ..++.+.
T Consensus 298 ~~~e~d~~Et~~v~l-ke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~~n 376 (446)
T KOG4438|consen 298 DGVEYDSLETKVVEL-KEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEKYN 376 (446)
T ss_pred hhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 66 7777777644 56777776554333222 2222222222 2222222
Q ss_pred ---------HHHHHHhHHHHHHHHH--HHHHHHHHHHHHHhhhHHhhHHHHHH
Q 005903 529 ---------AKEVNHRTKLMMEMVM--QLATQRELIQKQVYSLTSENKLLVEK 570 (670)
Q Consensus 529 ---------lKeae~Rak~aE~lV~--KL~~ErdrLedQL~s~keenK~L~ek 570 (670)
.+.++.....+...=. +.+..|..++.|+.+...++-.+...
T Consensus 377 ~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~H 429 (446)
T KOG4438|consen 377 VVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMH 429 (446)
T ss_pred ccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 66788888888888888888776554
No 217
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.69 E-value=1.3e+02 Score=36.02 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh---HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS---QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes---E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLS 403 (670)
..|++.|..++..+...+..+..+|..+....... .-++..++++|..|+-++.+..++.+.-..|+..+-
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777766665533 448888999999999988888888777776666554
No 218
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=58.08 E-value=5.4e+02 Score=33.51 Aligned_cols=15 Identities=7% Similarity=-0.124 Sum_probs=8.9
Q ss_pred HHHHHhhcCCccccc
Q 005903 67 LMYLLARGDDLETLV 81 (670)
Q Consensus 67 ~M~l~~~~~d~E~~~ 81 (670)
-|.++|+++-+=.+.
T Consensus 106 ~~~~ktles~~~~~~ 120 (1294)
T KOG0962|consen 106 KMEFKTLESVIWAIN 120 (1294)
T ss_pred HHHHHHHhhhheeee
Confidence 366666666655554
No 219
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=58.03 E-value=4.4e+02 Score=32.44 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=27.5
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhh
Q 005903 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFE 499 (670)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~E 499 (670)
..+|.++-+.++-.+..+.+...+++..|+|..-+--+|-+
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~ 562 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDE 562 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 45677777777777777777777777777776655445543
No 220
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.65 E-value=40 Score=28.74 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
+.++++|.-|.+++|.+|...+=+-+.+|..+....+.|.+++...
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999875
No 221
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=57.27 E-value=1.6e+02 Score=30.30 Aligned_cols=67 Identities=16% Similarity=0.326 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
++.++..-+..+++.++....+.. ++-.+++-+++ +.+++.++.+++.||-...-..+.|.+..+-.
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~--------~ll~ka~~~~d-~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLL--------ELLEKAKTVED-LLEIERELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH--------HHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 666777777778877766555433 33335555555 45788888899999999888888888877753
No 222
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.03 E-value=70 Score=30.97 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH--HHHhHHHHHHHHHHHHHhhhhhHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNEMDNFIESLKESLYGAESRAE 393 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~--EVaaLerrIelLKE~l~rAEsRa~ 393 (670)
++|+..+...+..|.+++...........+.+-...+ ....|...|..|+.++..-++|+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655555444433222 222444445555555444444443
No 223
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=56.73 E-value=2.9e+02 Score=29.97 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 005903 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (670)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q 523 (670)
+|.+|-.-|..|-.+..--..|.|..-..++-+++.+..+.+++..+..++..|| +|.+|.|
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe-~LcRaLQ 306 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE-KLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 4555555555555555555666666666677777777777777777777777774 3444443
No 224
>PRK10869 recombination and repair protein; Provisional
Probab=56.68 E-value=3.7e+02 Score=31.23 Aligned_cols=93 Identities=10% Similarity=0.127 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHh---HHHHHH
Q 005903 306 ELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNE---MDNFIE 379 (670)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaa---LerrIe 379 (670)
++.+.|.++.-+|+.-...|...-++ .+.++..+++++..+-.=-++|...+...-+..+..+.++.. .+..++
T Consensus 265 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~ 344 (553)
T PRK10869 265 GVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLE 344 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 34455555555555433333322221 355666777777777666666665555555544444444433 333455
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 005903 380 SLKESLYGAESRAESAEEK 398 (670)
Q Consensus 380 lLKE~l~rAEsRa~tAesK 398 (670)
.|+.++.++..++..+-.+
T Consensus 345 ~Le~e~~~l~~~l~~~A~~ 363 (553)
T PRK10869 345 TLALAVEKHHQQALETAQK 363 (553)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666665555555444333
No 225
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.96 E-value=2.2e+02 Score=28.42 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 005903 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (670)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAe 396 (670)
.|+.-+++.+.++..++..+...-+....+++.+..++..+.+=+.|+..|.
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443444444555555555555555555555553
No 226
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=55.15 E-value=2.6e+02 Score=28.99 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHh
Q 005903 348 EQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (670)
Q Consensus 348 ~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~r 387 (670)
.++..++........+.++.......|...|..++.-+..
T Consensus 16 ~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~ 55 (207)
T PF05010_consen 16 EEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQ 55 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333444444445555555555555555555554443
No 227
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=54.67 E-value=4.3e+02 Score=31.34 Aligned_cols=134 Identities=23% Similarity=0.233 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHH----------------HHhhhhhH----
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES----------------LYGAESRA---- 392 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~----------------l~rAEsRa---- 392 (670)
-+-+.+||.+..+||++++..-.+...-+-.+ .+++++|--. +...++|+
T Consensus 89 lk~nk~Lq~~nesLeEqv~~~~d~vvql~hel----------s~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~ 158 (596)
T KOG4360|consen 89 LKANKALQEDNESLEEQVDAPWDRVVQLGHEL----------SRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQR 158 (596)
T ss_pred HhhhhhhhhhhhhhHhhhcchHHHHHHhhhhh----------hhhhhhhheeeeccccccccccccCCCccCcchhhHHH
Confidence 45566899999999999887666544333222 1111111100 00011111
Q ss_pred ---HHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh----hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhH
Q 005903 393 ---ESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK----VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM 465 (670)
Q Consensus 393 ---~tAesKleeLSeTNdELerelkvLesrs~~deEK----~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdm 465 (670)
+.-..|++.+.+-|..+.-+...|+--...-++| ++.++++|+.++.|.---..-..--..+-+-.|++.+.+
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223455555555555555555555443322222 467788888887543322100000011223357788888
Q ss_pred HHHHHHHhhhh
Q 005903 466 ETLIEDLKSKV 476 (670)
Q Consensus 466 e~vIEdLk~Kl 476 (670)
++.|-|++-|.
T Consensus 239 lsql~d~qkk~ 249 (596)
T KOG4360|consen 239 LSQLVDLQKKI 249 (596)
T ss_pred HHHHHhhHHHH
Confidence 88888877764
No 228
>PRK00295 hypothetical protein; Provisional
Probab=54.31 E-value=55 Score=28.14 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=41.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
+-+++.|.-|-+++|..|...+=+.+.+|..+....+.|.+.++..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999998875
No 229
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=54.21 E-value=2.8e+02 Score=29.05 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=45.6
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesr 419 (670)
=+.|..|.+.|..++..+..+..++..|-.....+...=..+.|+++.|=.|
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999888888899999998888
No 230
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=54.05 E-value=5.5e+02 Score=32.32 Aligned_cols=49 Identities=22% Similarity=0.391 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHH
Q 005903 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (670)
Q Consensus 464 dme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~ 519 (670)
.+.-.+|.++....++++..|+-..+.- .|..||..+-.+++.|+..+.
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le-------~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALE-------SLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 3344556666666666666666666666 788888888888877776643
No 231
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=54.01 E-value=1.3e+02 Score=27.44 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhH
Q 005903 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (670)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme------~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~EL 500 (670)
...|+.+++|.+.=+..=..+.+++.- |--|-++. .++.+|+...... +..+. .|
T Consensus 26 ~~~le~~~~E~~~v~~eL~~l~~d~~v-----yk~VG~vlv~~~~~e~~~~l~~r~e~i-------e~~i~-------~l 86 (110)
T TIGR02338 26 KQQVEAQLKEAEKALEELERLPDDTPV-----YKSVGNLLVKTDKEEAIQELKEKKETL-------ELRVK-------TL 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchh-----HHHhchhhheecHHHHHHHHHHHHHHH-------HHHHH-------HH
Confidence 445555555555333333333333332 55554443 4445444444444 44455 66
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 005903 501 KNKQSFMRDKIKILESSLNRA 521 (670)
Q Consensus 501 eEEL~~l~~~lKsLE~sl~kA 521 (670)
++.+..++.+++.++.++.++
T Consensus 87 ek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 87 QRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777666554
No 232
>PRK04325 hypothetical protein; Provisional
Probab=53.69 E-value=86 Score=27.38 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=42.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.++++..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788999999999999999999999999999999999999999874
No 233
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=52.95 E-value=2.9e+02 Score=28.91 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=39.5
Q ss_pred hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHH
Q 005903 322 DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 372 (670)
Q Consensus 322 ~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa 372 (670)
...|..+.+- +++..|.+.+..+|..|+.+...+..|+.....+.+.-+
T Consensus 22 s~~lNd~TGY--s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs 70 (207)
T PF05546_consen 22 SQALNDVTGY--SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS 70 (207)
T ss_pred HHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666664 889999999999999999999999999988887644433
No 234
>PRK00736 hypothetical protein; Provisional
Probab=52.06 E-value=72 Score=27.42 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=42.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
+-+++.|.-|-+++|..|...+=+-+.+|..++..-+.|.+++...
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788999999999999999999999999999999999999999874
No 235
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=52.05 E-value=94 Score=27.10 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES 394 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~t 394 (670)
|..+..|++.-..|..+--.....+....++..+.+..+..+.+++..+..++...+.|+..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555444444444444444444444444455566666666666666666666666543
No 236
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.67 E-value=5.3e+02 Score=31.50 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=71.9
Q ss_pred HHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh-hHHHHHhhcCChhHHHHHH
Q 005903 262 AEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK-DMVLQKLESTKNSEVLTMK 340 (670)
Q Consensus 262 ~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k-~~~Lekl~~s~esEv~sLq 340 (670)
+..+..|+.+|+=- --..++-+|-..| .+...+|..+.+++....-+..++ ..+++.++ +++
T Consensus 88 ~~~i~~r~~~~~~d------r~~~~~~~l~~~q---~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~--------e~~ 150 (716)
T KOG4593|consen 88 AQSILARNYEAEVD------RKHKLLTRLRQLQ---EALKGQEEKLQEQLERNRNQCQANLKKELELLR--------EKE 150 (716)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 34555666665421 1122333444444 455567888888887777666664 33444443 467
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005903 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (670)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKle 400 (670)
+|+..+......+...+..++.+.--.+..+..+...++.++..+.+--.+++..-.+..
T Consensus 151 ~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~ 210 (716)
T KOG4593|consen 151 DKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQ 210 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776666665555666666666666666666665555554444433
No 237
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.57 E-value=3.8e+02 Score=29.72 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=25.5
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelk 414 (670)
-+.....++.-|+.++..-..|+..|...|..|-++.....-...
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~ 117 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE 117 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc
Confidence 344555556666666666666666666666666665554444333
No 238
>PRK02119 hypothetical protein; Provisional
Probab=51.43 E-value=91 Score=27.19 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=40.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
-+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.+.++..
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677888889999999999999999999999999999999988874
No 239
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=51.16 E-value=3.1e+02 Score=28.62 Aligned_cols=104 Identities=13% Similarity=0.221 Sum_probs=61.9
Q ss_pred HHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH---HHHH------HHHhHHHHhhHH
Q 005903 460 SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---ESSL------NRANIEKAASAK 530 (670)
Q Consensus 460 seisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsL---E~sl------~kA~q~ke~tlK 530 (670)
+....+..=+|-..+.+.+.-..++..-.|+. .|+.|+.-++..+... .... +.|.........
T Consensus 59 ~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~-------~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~ 131 (202)
T PF06818_consen 59 DSLRTKQLELEVCENELQRKKNEAELLREKLG-------QLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGED 131 (202)
T ss_pred HHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh-------hhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccc
Confidence 33333444444445777777777777777888 6666666666655554 1111 111111111233
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHH
Q 005903 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (670)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ek 570 (670)
.+..-..-++++-..|..+|.+.+.+..+.-.+-+.-.++
T Consensus 132 ~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eE 171 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEE 171 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4555566788999999999999999988876665554443
No 240
>PRK02793 phi X174 lysis protein; Provisional
Probab=51.16 E-value=1.1e+02 Score=26.64 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=41.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
-+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.++++..
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678888899999999999999999999999999999999998874
No 241
>PRK00846 hypothetical protein; Provisional
Probab=50.73 E-value=73 Score=28.46 Aligned_cols=48 Identities=15% Similarity=0.044 Sum_probs=43.8
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
..+-++++|.-|-+++|..|...+=+.+.+|..++...+.|.++++..
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447788999999999999999999999999999999999999999986
No 242
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.70 E-value=1.7e+02 Score=31.73 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNd 407 (670)
.+.+.+..||++..+...++.......+.. -.+.+.+......+.++....+.+...+..++..|.+||.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 333444444444444444444333333222 3355666777777777777777777777777777777764
No 243
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.56 E-value=1.9e+02 Score=31.27 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLK 382 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLK 382 (670)
+.+...+.++++.++.+-++....|.......++...++.+++.....++
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666555555555555444444445555444444443
No 244
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.51 E-value=3.2e+02 Score=29.36 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=40.9
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHH
Q 005903 306 ELKSKLGDFIEQLKAKDMVLQKLEST-----KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES 380 (670)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s-----~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel 380 (670)
-+...+.....+|..-+..|...... .+.+......-+..|+.++.+.+.++..+....-...=.|..+..+|..
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 44455555555555555555554443 2344555556666666666666666655543322212234444444444
Q ss_pred HHHHHHh
Q 005903 381 LKESLYG 387 (670)
Q Consensus 381 LKE~l~r 387 (670)
|+..+..
T Consensus 254 l~~~i~~ 260 (362)
T TIGR01010 254 LRKQIDE 260 (362)
T ss_pred HHHHHHH
Confidence 4444433
No 245
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.44 E-value=1.1e+02 Score=25.35 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=38.2
Q ss_pred HHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 005903 517 SLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (670)
Q Consensus 517 sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (670)
+..+.-+++..|+++++.+....+.-...|..+++.|..++..++.+|
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667888889999988888888888888888888888888777665
No 246
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=50.42 E-value=63 Score=29.62 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=39.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhh
Q 005903 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (670)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (670)
+.++.-.+++++-+..|...++.|+..+..+.+....+...+++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777788999999999999999999999999999999888875
No 247
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=50.33 E-value=1.4e+02 Score=24.46 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh----hHHHHHH
Q 005903 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT----NLELSEE 412 (670)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeT----NdELere 412 (670)
......+..+..++......+..... ......+..+-+..+.++.++..-+.++......+..+..+ +..+...
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 45566777777777777777633222 22345566666677777778877777777777777777544 3444444
Q ss_pred hhhhhc
Q 005903 413 INFLKG 418 (670)
Q Consensus 413 lkvLes 418 (670)
+..|..
T Consensus 82 ~~~l~~ 87 (105)
T PF00435_consen 82 LEELNQ 87 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 248
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=50.24 E-value=41 Score=36.40 Aligned_cols=76 Identities=13% Similarity=0.326 Sum_probs=63.2
Q ss_pred HHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhh
Q 005903 96 LVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQ 175 (670)
Q Consensus 96 ~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~ 175 (670)
-.+++|+++||.-|.-+-..+..+..+|.+.++.|.+-.+ + ..+.+.-.++.+.++.++.+|.-...++
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~-~----------~~~~~~l~~i~~l~~~~~~~r~~l~~~~ 196 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQ-G----------DEYDEALSTLAELEDIGWKVRLCLMDTQ 196 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-c----------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999876432 1 1234444779999999999999999999
Q ss_pred hhhhhcc
Q 005903 176 RVLSYFI 182 (670)
Q Consensus 176 r~~~~~~ 182 (670)
|++.++.
T Consensus 197 r~l~~l~ 203 (316)
T PRK11085 197 RALNFLV 203 (316)
T ss_pred HHHHHHh
Confidence 9998865
No 249
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.17 E-value=5.2e+02 Score=30.96 Aligned_cols=48 Identities=25% Similarity=0.285 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 005903 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (670)
Q Consensus 388 AEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~ 438 (670)
+-++...--.|.--..+-+.++-.+++-+++. ++.|+..||.+.+.-.
T Consensus 429 e~~~y~de~~kaqaevdrlLeilkeveneKnD---kdkkiaeler~~kdqn 476 (654)
T KOG4809|consen 429 EASYYRDECGKAQAEVDRLLEILKEVENEKND---KDKKIAELERHMKDQN 476 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccchhhhcCchhhhhh
Confidence 33333333344444566677777778877775 6788888888777543
No 250
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.00 E-value=82 Score=26.77 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=22.9
Q ss_pred hHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 005903 363 CFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (670)
Q Consensus 363 klEesE~EVaaLerrIelLKE~l~rAEsRa~tAe 396 (670)
+.+...++|.+|..-++..+++..||-.|+++--
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333445566666667777888888888887654
No 251
>PRK09343 prefoldin subunit beta; Provisional
Probab=49.92 E-value=2.3e+02 Score=26.68 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHH
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (670)
.+++..|.++++.-+..|.+..++|+.++.......+.
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999977777777777777776666555544
No 252
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.60 E-value=65 Score=28.20 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=38.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhcc
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~ 575 (670)
+..++.|..-+-++++-|+.|++.|..+-.++.++|..|.++..+.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56778888888899999999999999998888888888877776653
No 253
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=49.40 E-value=23 Score=38.84 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=31.7
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 005903 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (670)
Q Consensus 372 aaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~ 421 (670)
.+|+++|..+++.++..|.|+.........+.+-...+...+..|++++-
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36777788877777777777777776666666666666666666666543
No 254
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=49.34 E-value=88 Score=30.08 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHH------hHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHH
Q 005903 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW------DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (670)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseis------dme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELe 501 (670)
..+|.||+|.+.-|+.--.+.+++.- |-.|- ++..++.+|..+.+.-|-|....+.+-- .+.
T Consensus 30 ~~le~qL~E~~~al~Ele~l~eD~~v-----Yk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~-------~l~ 97 (119)
T COG1382 30 QQLEAQLKEIEKALEELEKLDEDAPV-----YKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEE-------KLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHH-----HHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 34556666665555554455555543 55443 4446777777777777777666666665 444
Q ss_pred HHHHHHHhhH
Q 005903 502 NKQSFMRDKI 511 (670)
Q Consensus 502 EEL~~l~~~l 511 (670)
+++.-+.+.+
T Consensus 98 e~l~eLq~~i 107 (119)
T COG1382 98 ERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 255
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.92 E-value=2.3e+02 Score=26.67 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhH
Q 005903 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (670)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme------~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~EL 500 (670)
...|+.+++|++.=+.+=....+++.- |--|-+++ .++.+|..+++..+ .++. .|
T Consensus 30 ~~~le~q~~e~~~~~~EL~~L~~d~~V-----Yk~VG~vlv~qd~~e~~~~l~~r~E~ie-------~~ik-------~l 90 (121)
T PRK09343 30 KSQIDLELREINKALEELEKLPDDTPI-----YKIVGNLLVKVDKTKVEKELKERKELLE-------LRSR-------TL 90 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchh-----HHHhhHHHhhccHHHHHHHHHHHHHHHH-------HHHH-------HH
Confidence 345556666655333333344444443 76666655 44444444444444 4455 55
Q ss_pred HHHHHHHHhhHHHHHHHHHHHh
Q 005903 501 KNKQSFMRDKIKILESSLNRAN 522 (670)
Q Consensus 501 eEEL~~l~~~lKsLE~sl~kA~ 522 (670)
+.....++.+++.++.++.++-
T Consensus 91 ekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 91 EKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666665543
No 256
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=48.83 E-value=31 Score=37.89 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=9.5
Q ss_pred HHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHH
Q 005903 264 VVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343 (670)
Q Consensus 264 ~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKv 343 (670)
.+++|+..=|.+..-|.+....+..++..++.+|+....-=++++.-|.... ..+..++..+
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLs------------------stV~~lq~Sl 93 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLS------------------STVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 3455555555555555555555555555555555444333333333332221 3334444444
Q ss_pred HHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHH
Q 005903 344 KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (670)
Q Consensus 344 ksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~ 386 (670)
..++..+......+......+-..+..+++|...|-.||.+|.
T Consensus 94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 4444444443333333333333334445555555555555543
No 257
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=48.81 E-value=26 Score=29.72 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 005903 373 EMDNFIESLKESLYGAESRAESAEEKVTQ 401 (670)
Q Consensus 373 aLerrIelLKE~l~rAEsRa~tAesKlee 401 (670)
++|-|+..||..+..||.|++.|+.+...
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777766554
No 258
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=48.63 E-value=45 Score=36.67 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=47.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc---cCCCCceecccCCCCCCccccccCCCccchhhh
Q 005903 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS---GKSSSATMYNAGDTDDKELLINPTNNLAGATVK 607 (670)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T---~k~~~~tm~~~gd~~~~~~~~~~~~~~~~~~~k 607 (670)
.+..|..-+|.-+..|...++.+...+.....+.+.+.++|+.. -+..-+=.+|--.|.++ .....+.
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg~e~---------~~k~~~~ 211 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEGEEE---------EGKGPEN 211 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT-----------HHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCCccc---------cccCHHH
Confidence 45555555565566666666666665555555566665555532 34445555563333211 1123345
Q ss_pred chHhhhhh-hhhhcccccccchhhhccCCCch
Q 005903 608 TSEDAVSL-MKSVQAGTHLNICRIYTRGLAYP 638 (670)
Q Consensus 608 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 638 (670)
.|++-++- .-.+..++++.|=|+|--+-.+|
T Consensus 212 ~l~~ii~e~~p~L~~e~~i~IerahR~~~~~~ 243 (370)
T PF02994_consen 212 FLEEIIPENFPNLPKETDIEIERAHRSPRPKP 243 (370)
T ss_dssp HHHHHHHHH-CHHHHHT---EEEEEEESSSS-
T ss_pred HHHHHHHHhCcCcccccchhhhhhhcccCCCC
Confidence 55555541 22356688888888876554444
No 259
>PF15294 Leu_zip: Leucine zipper
Probab=48.55 E-value=3.9e+02 Score=29.09 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=74.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHh----------------hHHHHHHHHHHHhHHHHhh
Q 005903 465 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD----------------KIKILESSLNRANIEKAAS 528 (670)
Q Consensus 465 me~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~----------------~lKsLE~sl~kA~q~ke~t 528 (670)
+-.-|.+|+.+..++.+|.-++|..|+..-+.+.+|+..|+.++. .+..||.+...+...=..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999999999999998877 1345677776665555556
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s 559 (670)
+.+-+...+..+..|.-=-+++-+.+.++..
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~ 240 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLSL 240 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhc
Confidence 7777777777777777777777777777443
No 260
>PTZ00464 SNF-7-like protein; Provisional
Probab=48.38 E-value=1.3e+02 Score=31.08 Aligned_cols=74 Identities=7% Similarity=0.142 Sum_probs=51.7
Q ss_pred hhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005903 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (670)
Q Consensus 477 ~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQ 556 (670)
.+-+.|.+..+.|+- .++.|+..++..++..-. .+....-..|+-+-.|.+..|....++......|+.+
T Consensus 21 ~~l~~r~~~l~kKi~-------~ld~E~~~ak~~~k~~~~---~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 21 KRIGGRSEVVDARIN-------KIDAELMKLKEQIQRTRG---MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677776 688888888877764322 2333334457778888899999888888888888877
Q ss_pred Hhhh
Q 005903 557 VYSL 560 (670)
Q Consensus 557 L~s~ 560 (670)
++++
T Consensus 91 ~~~i 94 (211)
T PTZ00464 91 QFTT 94 (211)
T ss_pred HHHH
Confidence 6653
No 261
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.20 E-value=6.4e+02 Score=31.38 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=81.1
Q ss_pred HHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh--------h--HHHHHhhcCChhHHHHHHHHHHH
Q 005903 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--------D--MVLQKLESTKNSEVLTMKEKVKS 345 (670)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--------~--~~Lekl~~s~esEv~sLqkKvks 345 (670)
+-.|+|++|.|+..-.-.++. .|..-++.|+-.|-+- + .+++-| -+|...|+.+++.
T Consensus 339 ~KYLLgELkaLVaeq~DsE~q---------RLitEvE~cislLPav~g~tniq~EIALA~Qpl----rsENaqLrRrLri 405 (861)
T PF15254_consen 339 LKYLLGELKALVAEQEDSEVQ---------RLITEVEACISLLPAVSGSTNIQVEIALAMQPL----RSENAQLRRRLRI 405 (861)
T ss_pred HHHHHHHHHHHHhccchHHHH---------HHHHHHHHHHHhhhhhhccccchhhhHhhhhhh----hhhhHHHHHHHHH
Confidence 345677777776543333221 2455566666555431 2 222222 4678888889888
Q ss_pred HHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 005903 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (670)
Q Consensus 346 LE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLe 417 (670)
|..||++-+ +-..+... ..+-=|+.+|+..+-.|.-.+..+..-.+.-..|.++|.+.++-...+-+-|.
T Consensus 406 lnqqlreqe-~~~k~~~~-~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~ 475 (861)
T PF15254_consen 406 LNQQLREQE-KAEKTSGS-QDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLR 475 (861)
T ss_pred HHHHHHHHH-hhcccCCC-cccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888888722 22211111 11334889999999999999999988888899999999998866666554443
No 262
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.11 E-value=5.1e+02 Score=30.21 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A 360 (670)
.-|+..|+.++.-||+++++.+..-..+
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~ 276 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEES 276 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4688888899999999988877654443
No 263
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=47.11 E-value=2.5e+02 Score=27.11 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=51.8
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh---------hHHhhHHHHHHHhhc
Q 005903 506 FMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS---------LTSENKLLVEKLQYS 574 (670)
Q Consensus 506 ~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s---------~keenK~L~ekLd~T 574 (670)
.+.+.+++||+..++..+.++..-+.-..+++.++.-+.++..-...++..+.- -+++|+.|..+++..
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~ 101 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDL 101 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 577889999999999999998888888888888888888876655555554433 356777777776654
No 264
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.09 E-value=3.3e+02 Score=27.84 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=86.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccch-hHHHHHHHhHHHHHhh
Q 005903 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKA 320 (670)
Q Consensus 242 eeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE-sel~sKL~~~~eqL~~ 320 (670)
.+|..+|..+....-........+..++.+..+..+-+....-+...+++.+...|++..-.- +.+..=....+
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l----- 155 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLL----- 155 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHH-----
Confidence 344444544555555566677778888888899999999999999999999999999842222 22221111111
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005903 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (670)
Q Consensus 321 k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKle 400 (670)
..|...|.-++.-++.++....-...-++...+.....+..++..++.|.+-+. .-|...|+...+
T Consensus 156 ------------~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln--~~R~~eae~~~~ 221 (240)
T PF12795_consen 156 ------------QAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN--QKRRQEAEQAVE 221 (240)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 244445555666666555554444444444444445555556666666655553 235555555555
Q ss_pred HHhhhhH
Q 005903 401 QLTDTNL 407 (670)
Q Consensus 401 eLSeTNd 407 (670)
.+.....
T Consensus 222 ~a~~~~~ 228 (240)
T PF12795_consen 222 EAEQLQE 228 (240)
T ss_pred HHHHHHH
Confidence 5444433
No 265
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=45.52 E-value=3.4e+02 Score=27.40 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHH
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l 385 (670)
.++..+.+++..-|..|+.-..+|..-...++..+.++......+...+.++
T Consensus 78 ~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~ 129 (201)
T PF12072_consen 78 KELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEEL 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333333333333333333
No 266
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=44.84 E-value=6.4e+02 Score=30.48 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhhh
Q 005903 341 EKVKSLEEQLKESEIRLQNANACFQTS 367 (670)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEes 367 (670)
++...++.++.....+|....++.++.
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~ 201 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISEL 201 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 444444455544444454444444443
No 267
>PRK11519 tyrosine kinase; Provisional
Probab=44.24 E-value=3.8e+02 Score=32.01 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=25.3
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccc
Q 005903 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQR 303 (670)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~R 303 (670)
.|.-++.++.+.|..-...+..+|+..|..|.....+
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777777777777777777777776655443
No 268
>PF13514 AAA_27: AAA domain
Probab=44.24 E-value=7.5e+02 Score=31.09 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=94.1
Q ss_pred HHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhccc-CCCcccccc-------------cccCCcccccccccccc
Q 005903 144 EKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIH-GNNDEALEF-------------SANGQLSNINGKSKMKN 209 (670)
Q Consensus 144 ~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~-~~~~~~~~~-------------~e~~~~~~~~~~~~mqt 209 (670)
..+.....+....+.+.++.+.....+.+.-+.-+..+.. +..-....+ ...+.-..-.....|+.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a~~~ 534 (1111)
T PF13514_consen 455 EAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAAVRE 534 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHHHHH
Confidence 3456667777777777777776666666666555544431 111000000 00111111223466777
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHH------hhhh
Q 005903 210 ADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVL------MGIS 283 (670)
Q Consensus 210 ~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL------~g~s 283 (670)
+++.-..++--=+.+|+--.|...+...+..-..+..++...+.....+..+-...|...-.+- .-+-+ +...
T Consensus 535 aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~-~p~~~~~Wl~~~~~~ 613 (1111)
T PF13514_consen 535 ADELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPL-SPAEMRDWLARREAA 613 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHH
Confidence 7777777777777888877787777777777777777777777777777666666665433111 10111 1112
Q ss_pred HHHHhhhhHHhhhccccccchhHHHHHHHhHHHH
Q 005903 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQ 317 (670)
Q Consensus 284 kel~gkLq~~qf~L~as~~REsel~sKL~~~~eq 317 (670)
-...+.+...+..+.....+...+...|...+..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 647 (1111)
T PF13514_consen 614 LEAAEELRAARAELEALRARRAAARAALAAALAA 647 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333444445555555555555555555544433
No 269
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.81 E-value=4.1e+02 Score=27.93 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=37.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELere 412 (670)
.+.+.+|++.|...+.+-.+.+..+......+.-|-...+++-++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999998888888888777777777777666
No 270
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.80 E-value=4.7e+02 Score=28.61 Aligned_cols=28 Identities=7% Similarity=0.159 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 547 ATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 547 ~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
+.+..+|+.++-....-|..+..+++++
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666777777776665
No 271
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=43.54 E-value=7.7e+02 Score=30.99 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=22.5
Q ss_pred cCCCccchhhhchHhhhhhhh-hhcccc-cc--cchhhhccCCCchHHHHHHHHH
Q 005903 597 PTNNLAGATVKTSEDAVSLMK-SVQAGT-HL--NICRIYTRGLAYPEFVKKVIAM 647 (670)
Q Consensus 597 ~~~~~~~~~~k~~~~~~~~~~-~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 647 (670)
|..++|+..-...-=|+.|+- ++.+|. ++ =++.=.+.||. |+....++.+
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD-~~~~~~~~~~ 999 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLD-SETLDTALDA 999 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCC-HHHHHHHHHH
Confidence 445666666554444444432 133443 33 22333344443 5555555443
No 272
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=43.47 E-value=2.1e+02 Score=28.45 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=47.5
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh----hHHHHHhHHHHHHHH
Q 005903 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESL 381 (670)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe----sE~EVaaLerrIelL 381 (670)
.|+-|.-..+|.|+.--+.-+ ..+-|+..|+.....|+.+...=...-..+...+.+ .+++..+|...|+.|
T Consensus 26 ~LmP~VV~vLE~Le~~~~~n~----~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~L 101 (158)
T PF09744_consen 26 GLMPKVVRVLELLESLASRNQ----EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQL 101 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566566655543211111 023455566666666666554433333333333322 244555666666666
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 005903 382 KESLYGAESRAESAEEKVTQLTDTNLELSE 411 (670)
Q Consensus 382 KE~l~rAEsRa~tAesKleeLSeTNdELer 411 (670)
++....-+.++.+......-+.+.-.++.+
T Consensus 102 e~e~r~L~~~~~~~~~q~~rlee~e~~l~~ 131 (158)
T PF09744_consen 102 EEENRQLELKLKNLSDQSSRLEEREAELKK 131 (158)
T ss_pred HHHHHHHHHHhhhhhhhccccchhHHHHHH
Confidence 665555555554444443333333333333
No 273
>PF13514 AAA_27: AAA domain
Probab=43.39 E-value=7.7e+02 Score=30.99 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=43.2
Q ss_pred hhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhh
Q 005903 104 ILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSY 180 (670)
Q Consensus 104 ildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~ 180 (670)
.+..=|++-|.+.|.+..+-..+... ..+...+......+.+.+....+...+.+.|......
T Consensus 527 ~fe~a~~~aD~laD~~~~~a~~~a~~--------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 589 (1111)
T PF13514_consen 527 AFEAAVREADELADRRLREAERAARL--------------AQLRARLEEARARLARAQARLAAAEAALAALEAAWAA 589 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888777666552 1235566667777777777777777777777776654
No 274
>PRK04406 hypothetical protein; Provisional
Probab=42.79 E-value=1.6e+02 Score=26.00 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=41.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
-+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.+.++..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888999999999999999999999999999999999988864
No 275
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=42.48 E-value=4.5e+02 Score=27.99 Aligned_cols=29 Identities=7% Similarity=-0.162 Sum_probs=17.6
Q ss_pred HHhhhHHhhHHHHHHHhhccCCCCceecc
Q 005903 556 QVYSLTSENKLLVEKLQYSGKSSSATMYN 584 (670)
Q Consensus 556 QL~s~keenK~L~ekLd~T~k~~~~tm~~ 584 (670)
++.............++.+...+|+.+|=
T Consensus 191 ~~~~~~a~l~~a~~~l~~~~I~AP~dG~V 219 (346)
T PRK10476 191 QRAAREAALAIAELHLEDTTVRAPFDGRV 219 (346)
T ss_pred HHHHHHHHHHHHHHHhhcCEEECCCCcEE
Confidence 33333344444455677888888888763
No 276
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.14 E-value=6.1e+02 Score=30.36 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTN 406 (670)
......+.++-|.+.+...+.++..|+.++...-..|
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4446677788888888888888888888887776655
No 277
>PRK12704 phosphodiesterase; Provisional
Probab=41.96 E-value=2.9e+02 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=11.1
Q ss_pred cccccchhhhccCCCchHHHHHHH
Q 005903 622 GTHLNICRIYTRGLAYPEFVKKVI 645 (670)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~ 645 (670)
|+|.-+..-+.+...+|..|..+|
T Consensus 380 ~~H~~iGa~il~~~~~~~~v~~aI 403 (520)
T PRK12704 380 GSHVEIGAELAKKYKESPVVINAI 403 (520)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHH
Confidence 445544444444444554444443
No 278
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.41 E-value=2.3e+02 Score=24.66 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQN 359 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~ 359 (670)
+.++.+|+.++.++..++..++.-+..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~ 30 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKR 30 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777666666665554433
No 279
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.38 E-value=4.4e+02 Score=27.59 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 005903 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES 394 (670)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~t 394 (670)
.++=+...-.+.++||+++...+.++..+....+.....+..|+++|..++....-..-|...
T Consensus 83 ~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 83 NEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667788888888888888888888887777778888888888877765544444333
No 280
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.96 E-value=2e+02 Score=25.06 Aligned_cols=50 Identities=30% Similarity=0.352 Sum_probs=20.6
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 005903 308 KSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRL 357 (670)
Q Consensus 308 ~sKL~~~~eqL~~k~~~Lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL 357 (670)
..+|..--++..+.-.+-++|... -..-+..|+.+++.+|.+++.+..++
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333332 12334444445445554444444333
No 281
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=40.71 E-value=1.9e+02 Score=24.89 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 005903 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (670)
Q Consensus 379 elLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLe 417 (670)
+.+.+++.+..+--.+++.++.++..-|.+|..+++-|+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554433
No 282
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=40.68 E-value=5e+02 Score=28.96 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHH
Q 005903 353 SEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILEN 432 (670)
Q Consensus 353 s~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~ 432 (670)
|...+..|++.+.+++..+..+...+...+ .....+.++ .+..+..++.|-.. |-.++.-.-+.++..-.
T Consensus 89 y~~al~qAea~la~a~~~~~~~~a~~~~~~-------A~i~~a~a~--~l~~a~~~~~R~~~-L~~~g~vs~~~~~~a~~ 158 (352)
T COG1566 89 YRAALEQAEAALAAAEAQLRNLRAQLASAQ-------ALIAQAEAQ--DLDQAQNELERRAE-LAQRGVVSREELDRARA 158 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH--HHHHHHHHHHHHHH-HHhcCcccHHHHHHHHH
Confidence 444455555555544444444444444444 444444443 55556666666544 33333333344444444
Q ss_pred HHHHHH
Q 005903 433 QLRDLE 438 (670)
Q Consensus 433 QLKEa~ 438 (670)
.+..++
T Consensus 159 a~~~A~ 164 (352)
T COG1566 159 ALQAAE 164 (352)
T ss_pred HHHHHH
Confidence 444443
No 283
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.59 E-value=5.4e+02 Score=28.43 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 005903 495 EDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (670)
Q Consensus 495 e~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t 528 (670)
+.|....+|+..+-+.+-+|+..+.+...+.+..
T Consensus 227 Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL 260 (306)
T PF04849_consen 227 EENRRQQEEITSLLSQIVDLQQRCKQLAAENEEL 260 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3344777888888888888887777776665543
No 284
>PRK15396 murein lipoprotein; Provisional
Probab=40.45 E-value=1e+02 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=29.5
Q ss_pred HHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 005903 352 ESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (670)
Q Consensus 352 es~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAes 397 (670)
....+.+..+++.+...+.+.++..-++.-+++..||-.|+++--.
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~ 74 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAT 74 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555666667777777788888888888876543
No 285
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.74 E-value=4.5e+02 Score=28.57 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=27.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs 420 (670)
++++...+-.+.+++..+...-.|+..++.+-..++++-.-......-+.+.+
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 33333333334444444444445555556666666666666666555555554
No 286
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.54 E-value=68 Score=28.30 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhh---hhHHhHHHHHHHHHhhhhcccceeccccc
Q 005903 95 ALVYDLLFGILD---SELREVERLLDTIHVEIVNVHHKISSCKH 135 (670)
Q Consensus 95 a~efDlL~gild---sEv~ele~~~~~lq~~I~~~~~~~~s~~~ 135 (670)
+.-||+++.|-+ .+.+.++.-++.|..-|.+|+.-|.+-..
T Consensus 6 P~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 6 PLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred chHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455788877765 36788888888888888888876655444
No 287
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=39.17 E-value=4.8e+02 Score=29.64 Aligned_cols=12 Identities=50% Similarity=0.628 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHH
Q 005903 426 KVGILENQLRDL 437 (670)
Q Consensus 426 K~~~LE~QLKEa 437 (670)
|...||.|+-+.
T Consensus 259 R~erLEeqlNd~ 270 (395)
T PF10267_consen 259 RYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHHHHHH
Confidence 566777777766
No 288
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.85 E-value=2.9e+02 Score=31.46 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhH------------------HHHHhHHHHHHHHHHHHHhhhhhHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ------------------EQLNEMDNFIESLKESLYGAESRAES 394 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE------------------~EVaaLerrIelLKE~l~rAEsRa~t 394 (670)
.+++..|++++..+++++...+.++..+.+.+.-.+ ..++.+.....-+.+.+.+.-.+...
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777776655554432110 02334445555555555555555555
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhc
Q 005903 395 AEEKVTQLTDTNLELSEEINFLKG 418 (670)
Q Consensus 395 AesKleeLSeTNdELerelkvLes 418 (670)
+..++..+.+.-.++.+++..+.+
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555555555555555555544
No 289
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=37.55 E-value=6.1e+02 Score=28.14 Aligned_cols=187 Identities=26% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHH-hHHHHHHHHHHHHH
Q 005903 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN-EMDNFIESLKESLY 386 (670)
Q Consensus 308 ~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa-aLerrIelLKE~l~ 386 (670)
+..|...+..|.+....| ..|+-...-+.+.|..+++..........++.|.-|+-|+ .|-++|+.|+-+-.
T Consensus 22 ~~~l~~~~~sL~qen~~L-------k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe 94 (310)
T PF09755_consen 22 REQLRKRIESLQQENRVL-------KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKE 94 (310)
T ss_pred hHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH
Q 005903 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (670)
Q Consensus 387 rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme 466 (670)
.---....=+.-++ ..|.+.+.-|+. +|+ .||++| ....+
T Consensus 95 ~L~~~~e~EEE~lt------n~L~rkl~qLr~------EK~-~lE~~L---------------------------e~EqE 134 (310)
T PF09755_consen 95 TLALKYEQEEEFLT------NDLSRKLNQLRQ------EKV-ELENQL---------------------------EQEQE 134 (310)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHH------HHH-HHHHHH---------------------------HHhHH
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 005903 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (670)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL 546 (670)
.+|.-|..++.+.+.. +. .+..+|.-++.---.||+.|++..+
T Consensus 135 ~~V~kL~k~i~~Le~e-------~~-------~~q~~le~Lr~EKVdlEn~LE~EQE----------------------- 177 (310)
T PF09755_consen 135 YLVNKLQKKIERLEKE-------KS-------AKQEELERLRREKVDLENTLEQEQE----------------------- 177 (310)
T ss_pred HHHHHHHHHHHHHHHH-------HH-------HhHHHHHHHHHHHHhHHHHHHHHHH-----------------------
Q ss_pred HHHHHHHHHHHhhhHHhhHHHHHHHhhccCCCC
Q 005903 547 ATQRELIQKQVYSLTSENKLLVEKLQYSGKSSS 579 (670)
Q Consensus 547 ~~ErdrLedQL~s~keenK~L~ekLd~T~k~~~ 579 (670)
.=|.||..|+.-+..+++.|..+|++..-++|
T Consensus 178 -~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~ 209 (310)
T PF09755_consen 178 -ALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPP 209 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
No 290
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=37.35 E-value=6.4e+02 Score=28.29 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=55.5
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhc-------C-----ChhH
Q 005903 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES-------T-----KNSE 335 (670)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~-------s-----~esE 335 (670)
+-|=.+...+.|++..+.-++.++.++..+.+...+=.....+++..+ .+.+-.....+.. + +.+=
T Consensus 116 ~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 193 (412)
T PF04108_consen 116 YDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQL--INKRLKDYELLAPFQSSLGSSPSSSSSNPL 193 (412)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hhhhhhhhhhccccccccCCCCCccccccc
Confidence 446677788999999999999999999999998887666666666655 1211111121100 0 0233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005903 336 VLTMKEKVKSLEEQLKESEIRLQ 358 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~ 358 (670)
...+-+-+.+||.++...-+.|.
T Consensus 194 ~~~i~~~l~~le~ema~lL~sLt 216 (412)
T PF04108_consen 194 MSTILKELHSLEQEMASLLESLT 216 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677766666555544
No 291
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.17 E-value=4.6e+02 Score=26.62 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=23.5
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 005903 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (670)
Q Consensus 369 ~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelk 414 (670)
.++..+..++..|+..+.+...+......++..+-.++......+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555544444444433
No 292
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.06 E-value=79 Score=26.80 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 005903 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (670)
Q Consensus 377 rIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkv 415 (670)
||.+|+.++.+-++-..+.......++++.+.+++-.+.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777888888888888877777776653
No 293
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=37.03 E-value=5.1e+02 Score=27.03 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=15.3
Q ss_pred hhHHhhHHHHHHHhhccCCCCceec
Q 005903 559 SLTSENKLLVEKLQYSGKSSSATMY 583 (670)
Q Consensus 559 s~keenK~L~ekLd~T~k~~~~tm~ 583 (670)
....+.+.....++++..-+|+.++
T Consensus 190 ~~~~~l~~a~~~l~~~~I~AP~~G~ 214 (334)
T TIGR00998 190 EAKERLKTAWLALKRTVIRAPFDGY 214 (334)
T ss_pred HHHHHHHHHHHHhhCcEEEcCCCcE
Confidence 3344444444567777777888765
No 294
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.56 E-value=5.8e+02 Score=27.61 Aligned_cols=116 Identities=23% Similarity=0.260 Sum_probs=81.5
Q ss_pred Hhhhhh-hHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccc
Q 005903 223 SLAREL-DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSL 301 (670)
Q Consensus 223 Sla~el-dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~ 301 (670)
+||+++ +....|.+.=..|-+++......-+ |-++-.-.-..++...+.+...++.++-.|+...
T Consensus 124 ~Laseit~~GA~LydlL~kE~~lr~~R~~a~~--------------r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~ 189 (267)
T PF10234_consen 124 QLASEITQRGASLYDLLGKEVELREERQRALA--------------RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLA 189 (267)
T ss_pred HHHHHHHHHHHHHHHHHhchHhHHHHHHHHHc--------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665 4677787776666666654432222 5555555566788888999999999999999999
Q ss_pred cchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 005903 302 QRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (670)
Q Consensus 302 ~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (670)
..|..|-+|++.-.-.|+.-..-|+.|.+-++ .-.+-...+|.+|.+.-..
T Consensus 190 ~de~~Le~KIekkk~ELER~qKRL~sLq~vRP----AfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 190 SDEANLEAKIEKKKQELERNQKRLQSLQSVRP----AFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888877777888877754 3334444455555544333
No 295
>PRK10698 phage shock protein PspA; Provisional
Probab=36.55 E-value=5e+02 Score=26.83 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=41.3
Q ss_pred HHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 518 LNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 518 l~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
...|..+|..| +..++....-....|.+|...+.+|+..|...+.+.+.|.......
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 4455566777778888888888888888888888888887776643
No 296
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.34 E-value=5.1e+02 Score=28.35 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCCCccccccCCCccchhhhchHhhhhhhhhhcccc
Q 005903 588 TDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGT 623 (670)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 623 (670)
+.||+.--.|.|.-.++.+.-+.++..+.+++-.|+
T Consensus 181 ~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~ 216 (302)
T PF09738_consen 181 ATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGS 216 (302)
T ss_pred CCCCccccCccccCCCcccccchhhhhhhcccCCCC
Confidence 444444223455556777778889999988886665
No 297
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.69 E-value=2.6e+02 Score=27.56 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHhh-hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 005903 339 MKEKVKSLEEQLKESEIRLQNANACFQT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (670)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEe-sE~EVaaLerrIelLKE~l~rAEsRa~tAesKlee 401 (670)
+-.++-.+++.++....|...+....+. ..++....+..|+.||.++.+++.-.+.-..+++.
T Consensus 123 li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555554444444322222 23455566667777777777755555444444433
No 298
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=35.01 E-value=6.8e+02 Score=27.92 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----hHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQN----ANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~----A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeL 402 (670)
++-+..+++++..+++++...-.+... +...++.+...+..|-.+|.+++++-.++|.-...-..-...|
T Consensus 24 d~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~L 97 (383)
T PF04100_consen 24 DELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQL 97 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777766555442 2333455566666777777777766666665444444333333
No 299
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.99 E-value=1.9e+02 Score=24.73 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE 383 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE 383 (670)
.+++|+..+|..++................+..+..++..|..+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666655554444333333333334444455555544444
No 300
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.74 E-value=1.8e+02 Score=28.22 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005903 336 VLTMKEKVKSLEEQLKESEIRLQ 358 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~ 358 (670)
+..|++.+..+..+.+.....|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 301
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.38 E-value=3.8e+02 Score=32.62 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=50.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhh
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 445 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~ 445 (670)
+-..+++.|+.|+++....|.+...+.....++.+...+++++...|+.+ |-..++.-.++++.-+.+|+
T Consensus 514 ~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE------EDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 33478888888888888888888888888888888888888888888764 44445555555543333333
No 302
>KOG4324 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.19 E-value=2.2e+02 Score=32.82 Aligned_cols=162 Identities=19% Similarity=0.225 Sum_probs=100.2
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC---------------cchhhhhHHHHHHHHHHHHHHhhhhh
Q 005903 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS---------------NTKKVGILENQLRDLEIQLQQAKVSS 448 (670)
Q Consensus 384 ~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~---------------deEK~~~LE~QLKEa~~QLqhA~asa 448 (670)
++.+-++..+-...||. +...++-.+-+.-.+-+.... -+.+...|-.||.++++.+--+....
T Consensus 59 ~v~~l~e~~~~~~~~rn-ae~ea~~v~~e~ed~tss~~dean~mva~aRke~~a~e~~~~ql~~ql~~~dt~~~s~~~ql 137 (476)
T KOG4324|consen 59 KVHNLEEKLQLTETKRN-AESEADRVEVELEDLTSSLFDEANNMVANARKETYASEKRVNQLKKQLVEADTLLSSAQLQL 137 (476)
T ss_pred HHhcCccchhhcccccC-chhhhccccCCCcchhcccccccccccccccccchhhhhhhhhhhHHhhhhhcccchhhhhh
Confidence 34445555555566663 555555555544444333221 15556777778887776555544433
Q ss_pred HhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 005903 449 EASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (670)
Q Consensus 449 Eas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t 528 (670)
..-+. |.. +++-+.=-+-|+..|.++.+..-.--.+|-+||..-..+..|+.-+. +++..- --+.
T Consensus 138 ~~Lkv---mhs--ms~r~e~snrl~~eLsrt~t~la~kd~~~d~lS~i~~~~s~e~~Elt-------~sLf~E---a~Km 202 (476)
T KOG4324|consen 138 DSLKV---MHS--MSDREEGSNRLKEELSRTQTELALKDEECDILSGIRAQLSQELEELT-------ASLFEE---AHKM 202 (476)
T ss_pred hHHHH---Hhh--cchhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHH-------HHHHHH---HHHH
Confidence 33222 111 44444555667888888888777777778778877776666665553 333221 1233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (670)
+.++..|-++|+.+.+--...|+=|+.++-.++
T Consensus 203 V~aA~~r~~~~ek~l~Esr~~i~~lqaEv~alk 235 (476)
T KOG4324|consen 203 VRAANPRQEFIEKQLTESRLKIDVLQAEVNALK 235 (476)
T ss_pred hhhcccchhhhhhhhhHhHHHHHHHHHHHHHhH
Confidence 678889999999999988888888888887764
No 303
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.14 E-value=4.4e+02 Score=25.48 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhh
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (670)
..+.+.|.++. ..++.+|++|-..+.++++.|-.++.+
T Consensus 72 ~~eL~er~E~L-------e~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 72 VDELEERKETL-------ELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554 355556666666666666666666665
No 304
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.07 E-value=8.4e+02 Score=28.70 Aligned_cols=46 Identities=17% Similarity=0.087 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
-|.-..|.+.|...+-|+...+-++.++-..+.++.+.+++.|+.+
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rs 429 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRS 429 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566778888888999999999999999999999999999999874
No 305
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=34.06 E-value=4.8e+02 Score=30.34 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=11.3
Q ss_pred cccccchhhhccCCCchHHHHHHH
Q 005903 622 GTHLNICRIYTRGLAYPEFVKKVI 645 (670)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~ 645 (670)
|+|.-+..-+.+.+.+|+.|..+|
T Consensus 374 ~~H~~~Ga~ll~~~~~~~~V~~aI 397 (514)
T TIGR03319 374 GSHVEIGAELAKKYKESPEVVNAI 397 (514)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHH
Confidence 455544444444444555444444
No 306
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.81 E-value=3.3e+02 Score=32.74 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=15.6
Q ss_pred cccchhhhccCCCchHHHHHHHHHH
Q 005903 624 HLNICRIYTRGLAYPEFVKKVIAMM 648 (670)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (670)
-.+|-|.=.-.++-++-+++++.+.
T Consensus 598 dV~i~~ld~~~vv~~eelr~~~e~~ 622 (652)
T COG2433 598 DVQIIRLDEFAVVDSEELRRAIEEW 622 (652)
T ss_pred ceEEEEecceEeecHHHHHHHHHHH
Confidence 4455555555666777777777653
No 307
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=33.74 E-value=8.4e+02 Score=28.61 Aligned_cols=110 Identities=23% Similarity=0.274 Sum_probs=77.1
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh------HHH
Q 005903 463 WDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS------AKE 531 (670)
Q Consensus 463 sdme~vIEdLk~Kl~rAE~RaEsaEsKc~-----~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t------lKe 531 (670)
.++-.-|+|.|--.+||=.| .++++.+ =||--..|=+.|-++++..=++|..+|--.-+.--.. +++
T Consensus 361 r~i~egI~dVKkaAakAg~k--G~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~e 438 (488)
T PF06548_consen 361 RRIMEGIEDVKKAAAKAGVK--GAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLRE 438 (488)
T ss_pred HHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 44445567676666666433 4556554 1222233445555555557788988886555444333 899
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 532 VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 532 ae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
++.-+.++++--+..+.|-+++..||-.+|.+++.=..++++-
T Consensus 439 aeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~ 481 (488)
T PF06548_consen 439 AEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQY 481 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877777653
No 308
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.55 E-value=1.6e+02 Score=31.74 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 005903 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (670)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAes 397 (670)
++....++++++..+....++-++|+..|+--+-+++|++-|+.+-.+
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555556777889999999999999999999988653
No 309
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.46 E-value=5.5e+02 Score=26.09 Aligned_cols=100 Identities=19% Similarity=0.301 Sum_probs=49.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 005903 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (670)
Q Consensus 468 vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~ 547 (670)
-+..++.++...+.|.......+- .+.+++...+.++..+..+++.....=..+..-...+.+...+....+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~-------~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIE-------RLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELE 129 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666555555555 6666666666666666555555444333332333344444444444444
Q ss_pred HHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 548 TQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 548 ~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
....++..--..+...-..+...+...
T Consensus 130 ~~~~~l~~l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 130 ERKQRLSQLQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444331222333444455555553
No 310
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=32.00 E-value=1.3e+03 Score=30.23 Aligned_cols=106 Identities=11% Similarity=0.163 Sum_probs=83.2
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH---HHh
Q 005903 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV---NHR 535 (670)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKea---e~R 535 (670)
.....+...+++-++..+.++|..+..+..+.- +..+++..+..++..+....+++..++.....++ ..+
T Consensus 919 ~~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~-------~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 991 (1395)
T KOG3595|consen 919 IDKYSKVLKVVEPKRQELARLEAELKAAMKELE-------EKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELK 991 (1395)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566667778788888888888777777777 7777888888888888888888777777774444 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHH
Q 005903 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (670)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekL 571 (670)
...+.++|..|..|++|.-..+......+..+....
T Consensus 992 ~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l~gd~ 1027 (1395)
T KOG3595|consen 992 LLRAEELIQGLSGEKERWSETSEQFSKQYSRLVGDV 1027 (1395)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhhhhHHH
Confidence 889999999999999999999999888888775443
No 311
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=31.90 E-value=3.3e+02 Score=23.31 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhH-----hhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNAN-----ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~-----aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeL 402 (670)
.++.....++..|+..+..+..++.... ..+-....-+..+...|..++..+..++.....+...+..+
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 312
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=31.72 E-value=3.5e+02 Score=24.11 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=39.9
Q ss_pred hhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhh
Q 005903 405 TNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 477 (670)
Q Consensus 405 TNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~ 477 (670)
++.++..-.+.|++. +..++.+|.+. +.|+.+++.+-.+=+.--.++.+--.+|.+++.++.
T Consensus 33 ~~~e~~~~~~eL~~~-------l~~ie~~L~DL----~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 33 SSEELKWLKRELRNA-------LQSIEWDLEDL----EEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp -HHHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 344555555555553 67788888764 588899888866222223578888888887776654
No 313
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.67 E-value=3.9e+02 Score=24.14 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
.|+.=+.-+...+..||...+.-....... -+++.+..-+..--.+|+.+.|........+..-|+.++..|+.+
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888887766655554 455555566666667777777877777777888888888887754
No 314
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.59 E-value=3.4e+02 Score=23.57 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005903 338 TMKEKVKSLEEQLKESEIR 356 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQ 356 (670)
.|.++...++.+++....+
T Consensus 66 ~L~~~~~~~~~~i~~l~~~ 84 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQ 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 315
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=31.45 E-value=7.8e+02 Score=27.98 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelk 414 (670)
+..-|+-.|.-++|+--+-+-.++.....|-+-++-+.+|+||++
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 333444444444444444444555555556566666666666655
No 316
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=31.25 E-value=1.2e+02 Score=28.19 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=42.0
Q ss_pred hhhHHHHHhHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHH
Q 005903 365 QTSQEQLNEMDNFIESLKESL-YGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (670)
Q Consensus 365 EesE~EVaaLerrIelLKE~l-~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqh 443 (670)
+..+.....++..+++|-..| ..|=.-...|.-....+..-|..+.+.++..+. +++.|..||+..+..+++
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~-------~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA-------LLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH-------CCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 334555555566666665555 445555555555555555666666666665444 367777777777744443
No 317
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=31.07 E-value=2.1e+02 Score=27.45 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh----hHhhhHHHHHhHHHHHHHHHHHH
Q 005903 336 VLTMKEKVKSLEEQLKESEIRLQNANA----CFQTSQEQLNEMDNFIESLKESL 385 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~a----klEesE~EVaaLerrIelLKE~l 385 (670)
+.+|+.+++.+..++++|+..-....+ .+++....+.+++..+..+|+++
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 456777888888888776665433222 22333444444444444444443
No 318
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=30.90 E-value=2.7e+02 Score=30.97 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFI 378 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrI 378 (670)
.+.|.-||+|+..|+.+|.++..+|+.++..|.=+++.-+=|+..+
T Consensus 174 ~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslL 219 (323)
T PF08537_consen 174 SDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLL 219 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888887777655544444333333
No 319
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.88 E-value=1.7e+02 Score=26.83 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=13.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAES 394 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~t 394 (670)
.+.+.++..-++--+++-.||-+|+++
T Consensus 44 ~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 44 EQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444455555555555555543
No 320
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=30.87 E-value=1.1e+03 Score=28.97 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=20.9
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005903 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (670)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaEsaEsKc~ 491 (670)
.-.+++.+|++|..+-...|.+.+.++....
T Consensus 514 ~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~ 544 (782)
T PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLK 544 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447778888777776666666666666665
No 321
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.43 E-value=4.3e+02 Score=32.17 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 005903 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 372 aaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesr 419 (670)
..+++.|+.|+++....|.+...+.....++.+...+++++.+.|+.+
T Consensus 511 ~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 511 EEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888888888888888888888888877764
No 322
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=30.22 E-value=77 Score=30.62 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=21.8
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccc---hhhHHHH--HHHhHhhhhhhH--hhHHHH-----HHHHHHHHH---hh
Q 005903 107 SELREVERLLDTIHVEIVNVHHKISSCKH---LREVFTI--MEKMEKKLHDCE--GSLKES-----QEHVSELKM---QS 171 (670)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~---~~~~f~~--~~~~~~kL~~~~--~sLkq~-----qe~~~eik~---qs 171 (670)
+||.+|=.-+..+..+|.-.-.++-|-.| .-++|.| |+.|-++++.|+ ..|.+. ..+|+.=.. ..
T Consensus 6 kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~q~d~~iip~~~~~~~~ 85 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEALKKQPDKQIIPSPEEDSKG 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCcCCCCCCCCCC
Confidence 34444444444444444444333333333 2334444 555566666652 111111 223322222 24
Q ss_pred HhhhhhhhhcccCCCccc
Q 005903 172 AKFQRVLSYFIHGNNDEA 189 (670)
Q Consensus 172 a~f~r~~~~~~~~~~~~~ 189 (670)
.+|++ -+|.||++||.
T Consensus 86 ~~~~k--YSyPN~~VGne 101 (121)
T PF03310_consen 86 SSLQK--YSYPNWNVGNE 101 (121)
T ss_dssp ------------------
T ss_pred CCCcc--cCCCCCCCCch
Confidence 78888 34679999886
No 323
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=30.06 E-value=7.3e+02 Score=28.64 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=20.0
Q ss_pred HHhHHHHhhhHHHHHhhhhhhhHHHHHHH
Q 005903 231 EKKISELNQNEEQLKLKLHHTEQVAFRME 259 (670)
Q Consensus 231 EkkL~~s~~~eeeLk~kL~~~eqe~~~lE 259 (670)
||+=.-+-...+.|.-||++-.+-.+-+|
T Consensus 90 EkkNqksahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 90 EKKNQKSAHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666667777777777777777666
No 324
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=29.81 E-value=8e+02 Score=27.17 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005903 336 VLTMKEKVKSLEEQLKESEIR 356 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQ 356 (670)
+-.||+|++.||++-......
T Consensus 162 le~Lq~Klk~LEeEN~~LR~E 182 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSE 182 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777655444433
No 325
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=29.62 E-value=1.1e+03 Score=28.87 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhhHHHHHH
Q 005903 499 ELKNKQSFMRDKIKILES 516 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~ 516 (670)
.|..||+.++.++..++.
T Consensus 370 ~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 370 QLKAELKALKSKYNELEE 387 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888888776
No 326
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.54 E-value=3.1e+02 Score=30.21 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=53.3
Q ss_pred hHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCCh
Q 005903 275 SAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (670)
Q Consensus 275 a~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~e 333 (670)
+--||+-.-+..+-++|.+-..||....-|..|-+|++.-.-.|+.-..-|++|++-+.
T Consensus 106 ~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP 164 (338)
T KOG3647|consen 106 VEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRP 164 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34578889999999999999999999999999999999999899988889999998854
No 327
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.33 E-value=1e+03 Score=28.35 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 005903 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (670)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (670)
+.....|.+|-.+++..+-++.-..++..|.+-++|.++
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~ 195 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLE 195 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999999999888888764
No 328
>PF13166 AAA_13: AAA domain
Probab=29.25 E-value=9.7e+02 Score=27.96 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=13.2
Q ss_pred ccccccCcccccccccchhhhhhhee
Q 005903 25 EVTLSSGIDMQEKQIDCTMTVLTRVD 50 (670)
Q Consensus 25 ~~~~s~g~~~~~~~~~~~~~~lt~ve 50 (670)
..+.-.|.-+.|+ .+...+|..+.
T Consensus 17 ~~n~IYG~NGsGK--Stlsr~l~~~~ 40 (712)
T PF13166_consen 17 KINLIYGRNGSGK--STLSRILKSLC 40 (712)
T ss_pred ceEEEECCCCCCH--HHHHHHHHHHh
Confidence 3444455333343 66677777764
No 329
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.23 E-value=9.8e+02 Score=27.99 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcC
Q 005903 394 SAEEKVTQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 394 tAesKleeLSeTNdELerelkvLesr 419 (670)
.+..|+..+.++-.+|..+-+.|-++
T Consensus 96 ~~~ek~~~l~~~~~~L~~~F~~LA~~ 121 (475)
T PRK10361 96 HADDKIRQMINSEQRLSEQFENLANR 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766664
No 330
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.71 E-value=1.8e+02 Score=33.75 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l 385 (670)
.-|.|...||++|+...-.++.........+++|..|+..|..|+..+
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665543333222333333444444444444444444
No 331
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.42 E-value=4.8e+02 Score=27.06 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=58.8
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC--------------ChhHHH
Q 005903 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEVL 337 (670)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s--------------~esEv~ 337 (670)
++|+.+|++.-..+- .|==+. .|.-|..+||.==+.-....+++|.+....-.|.-+. +++|..
T Consensus 5 ~~~~e~ivl~~~~eq-NrP~ss-q~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~ 82 (201)
T KOG4603|consen 5 AEDAEGIVLRYLQEQ-NRPYSS-QDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQ 82 (201)
T ss_pred ccccHHHHHHHHHHh-cCCCch-HHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHH
Confidence 456666666544331 111111 1223444444411233455677777765555555444 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHH--HHHhHHHHHHHHHHHHHhhhhhHHH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNEMDNFIESLKESLYGAESRAES 394 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~--EVaaLerrIelLKE~l~rAEsRa~t 394 (670)
-|-.++.-|+.++....-....+.+.+-...+ .+-.|+..|+.|+..+..-++|+.+
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444433322222222221111 2335666777787777777766654
No 332
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.38 E-value=6.8e+02 Score=25.84 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=5.4
Q ss_pred hhhHHHHHHHH
Q 005903 427 VGILENQLRDL 437 (670)
Q Consensus 427 ~~~LE~QLKEa 437 (670)
+..|+.|+...
T Consensus 86 l~~L~~qi~~~ 96 (251)
T PF11932_consen 86 LASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHH
Confidence 44455555543
No 333
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.27 E-value=2.3e+02 Score=27.86 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=34.1
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHH
Q 005903 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE 352 (670)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLde 352 (670)
.+.+.++....||..++..|..|..+ ...+-.|+.++..|+.+.++
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888875 55666778887777777763
No 334
>PRK11020 hypothetical protein; Provisional
Probab=28.25 E-value=1.9e+02 Score=27.94 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 005903 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563 (670)
Q Consensus 500 LeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~kee 563 (670)
+..||..+-++|..+.-++..|..+-+. ..+.|+..|++.|..+|.+++..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~-------------~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA-------------EKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888777777666665543 45778888888888888887654
No 335
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=28.12 E-value=1.2e+03 Score=28.73 Aligned_cols=216 Identities=19% Similarity=0.258 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELere 412 (670)
-.++.+|..|+..||+.|.........- -.+++...+.-..|+..++++...+.+-.+-+.. |.+-
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e-------~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~-------LR~Y 226 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGE-------AKELAEAQREADLLREQLSKTQEELEAQVTLVEQ-------LRKY 226 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHH
Confidence 4788899999999999997666643211 1345555666677777777777665543222222 2222
Q ss_pred hhhhhcCCCC----cchhhhhHHH--HHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhh
Q 005903 413 INFLKGNNDS----NTKKVGILEN--QLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV 486 (670)
Q Consensus 413 lkvLesrs~~----deEK~~~LE~--QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsa 486 (670)
+..+-..... .-||...++. +|++-+.-|+ +.++=-+- ....+.+|+++-| .++.+=-.-.+..
T Consensus 227 vGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~---~T~ELLqV----RvqSLt~IL~LQE---eEL~~Kvqp~d~L 296 (739)
T PF07111_consen 227 VGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQ---ATAELLQV----RVQSLTDILTLQE---EELCRKVQPSDPL 296 (739)
T ss_pred HhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHH---HHHhccCCCCCCC
Confidence 2222111000 1122222221 1222110000 11111111 2344566666665 4433322212211
Q ss_pred h----hhh---------------hhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHh-HHH-HHHHHHH
Q 005903 487 E----EQC---------------IVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR-TKL-MMEMVMQ 545 (670)
Q Consensus 487 E----sKc---------------~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~R-ak~-aE~lV~K 545 (670)
| .|| +-|-.--++++..++-+++++.+||..+....++..--.--+..| |++ ++++-+|
T Consensus 297 e~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sk 376 (739)
T PF07111_consen 297 EPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSK 376 (739)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 1 222 222344557788889999999999999999888887663333333 111 2444443
Q ss_pred -HHHHHHHHHHHHhhhHHhhHHHHHHHh
Q 005903 546 -LATQRELIQKQVYSLTSENKLLVEKLQ 572 (670)
Q Consensus 546 -L~~ErdrLedQL~s~keenK~L~ekLd 572 (670)
|+.+..+-++.-..+..++..-...|+
T Consensus 377 tLQ~ELsrAqea~~~lqqq~~~aee~Lk 404 (739)
T PF07111_consen 377 TLQAELSRAQEARRRLQQQTASAEEQLK 404 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444444444444333333
No 336
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.99 E-value=5.9e+02 Score=28.44 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 005903 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (670)
Q Consensus 373 aLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvL 416 (670)
-+|+.++.+=.+...+..++..+..++..++++..+..++++.+
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45667777777788888888899999999998888888888744
No 337
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.92 E-value=6.3e+02 Score=25.32 Aligned_cols=84 Identities=20% Similarity=0.335 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHH--Hhh--HHHHHHhHHHH
Q 005903 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK--AAS--AKEVNHRTKLM 539 (670)
Q Consensus 464 dme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~k--e~t--lKeae~Rak~a 539 (670)
++..=++++|.++...-...+..+.++ +..|.+|-..-...+.+++.. ..| |+++..+--..
T Consensus 31 ~l~~EL~evk~~v~~~I~evD~Le~~e--------------r~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~ 96 (159)
T PF05384_consen 31 RLRKELEEVKEEVSEVIEEVDKLEKRE--------------RQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAML 96 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566555555544444444 377777775555566555543 344 77777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 005903 540 MEMVMQLATQRELIQKQVYSLT 561 (670)
Q Consensus 540 E~lV~KL~~ErdrLedQL~s~k 561 (670)
..-..+|...||.|+..+..+.
T Consensus 97 re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888877766543
No 338
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=27.87 E-value=1e+03 Score=27.69 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=99.5
Q ss_pred HHHHhh--hhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHH
Q 005903 276 AEVLMG--ISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQL 350 (670)
Q Consensus 276 ~EvL~g--~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s---~esEv~sLqkKvksLE~qL 350 (670)
.-||.| ||--+++=|=++--+|..-...=++|+-.|...-++|..-.-+....+.. -.+|+..-...-+.++.++
T Consensus 46 vtvltG~liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~ 125 (499)
T COG4372 46 VTVLTGMLISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQEL 125 (499)
T ss_pred hhhhhcchhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 45556666655555554444444556666665555555544333333332 2467777777777888888
Q ss_pred HHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 005903 351 KESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (670)
Q Consensus 351 des~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs 420 (670)
+...-.+.+|.-.+-....+-.++..++..|-+.--+++..+++-...-+.|-.++.+++...-.|.-++
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~ 195 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRS 195 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777666655566777889999999998888888888888888888888889988888787764
No 339
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=27.71 E-value=2.7e+02 Score=31.85 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHHHHHh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYG 387 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKE~l~r 387 (670)
+.+..||+-+...|.||-.+...|.+|....|.- +..|++++.+|.+||..+..
T Consensus 2 ~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd 67 (428)
T PF00846_consen 2 STLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLAD 67 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888999999999888888887776542 55888888888888887755
No 340
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=27.68 E-value=7.5e+02 Score=26.12 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=13.6
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhc
Q 005903 306 ELKSKLGDFIEQLKAKDMVLQKLES 330 (670)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Lekl~~ 330 (670)
++..++..+..++......++.+..
T Consensus 78 ~~~~~l~~~~a~l~~~~~~l~~~~~ 102 (331)
T PRK03598 78 PYENALMQAKANVSVAQAQLDLMLA 102 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566666665555555555443
No 341
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.07 E-value=7e+02 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHhhhHH
Q 005903 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYS 460 (670)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mkys 460 (670)
++++-.-++.||+.|+..||-.+.+++-.+.
T Consensus 352 ~~kkrqnaekql~~Ake~~eklkKKrssv~g 382 (575)
T KOG4403|consen 352 YNKKRQNAEKQLKEAKEMAEKLKKKRSSVFG 382 (575)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhcchhe
Confidence 3344444555666666888888875554443
No 342
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.04 E-value=2.1e+02 Score=27.47 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesr 419 (670)
.+++...-|++|++++.+.|.-++.-...+..+.+++.-+.++++....+
T Consensus 35 qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 35 QLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556777777888777777777777777777777777776655443
No 343
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=27.02 E-value=1e+03 Score=27.49 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=49.3
Q ss_pred HHHHhHHHHHhhhhHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHH
Q 005903 309 SKLGDFIEQLKAKDMVLQKLEST-----KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE 383 (670)
Q Consensus 309 sKL~~~~eqL~~k~~~Lekl~~s-----~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE 383 (670)
.-++.+++++..-...|-.+... +..+...+..=+..||.||-+.+.+|......+-..--+|..+.++|.-|+.
T Consensus 249 ~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~ 328 (434)
T PRK15178 249 NDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEK 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Confidence 44555555555555555555544 5677777777888888888888887776655432222344555555555555
Q ss_pred HHHhhhhhH
Q 005903 384 SLYGAESRA 392 (670)
Q Consensus 384 ~l~rAEsRa 392 (670)
.|..-..|+
T Consensus 329 QIa~er~kl 337 (434)
T PRK15178 329 QIGEQRNRL 337 (434)
T ss_pred HHHHHHHHh
Confidence 554433333
No 344
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=26.86 E-value=2.4e+02 Score=30.27 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHhH
Q 005903 428 GILENQLRDLEIQLQQAKVSSEAS 451 (670)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas 451 (670)
..++.++.+++.+++.|.+-.+.+
T Consensus 102 ~~~~a~l~~~~~~l~~a~~~l~~a 125 (370)
T PRK11578 102 KEVEATLMELRAQRQQAEAELKLA 125 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554444443333
No 345
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=26.05 E-value=3.4e+02 Score=21.67 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005903 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (670)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeT 405 (670)
++.....+...+.-.-..-.+|..-+..|..+...+.+|..++..+..++..+.+.
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444333444456777778889999999999999999999888877654
No 346
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.99 E-value=1.5e+03 Score=29.18 Aligned_cols=206 Identities=18% Similarity=0.214 Sum_probs=106.9
Q ss_pred hhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccch-------HHHHhhhhHHHHhhhhHHhhhcccc
Q 005903 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENS-------AEVLMGISKEMLGRFQIVQFNLNGS 300 (670)
Q Consensus 228 ldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa-------~EvL~g~skel~gkLq~~qf~L~as 300 (670)
++|=|++..++.--.+|..+|..+..+.--.---+..+..++--.+|- .+.|....+-.-|....+|-.+..-
T Consensus 667 Le~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k 746 (1200)
T KOG0964|consen 667 LELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPK 746 (1200)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH
Confidence 334444444444444444444443333333333333333333333333 3445555555556666666666554
Q ss_pred ccchhHHHHHHHhHHHHHhhhhHHHHH-----hhcCChhHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhHhhh-----
Q 005903 301 LQRESELKSKLGDFIEQLKAKDMVLQK-----LESTKNSEVLTMKEKVKSLEEQLKESEIR---LQNANACFQTS----- 367 (670)
Q Consensus 301 ~~REsel~sKL~~~~eqL~~k~~~Lek-----l~~s~esEv~sLqkKvksLE~qLdes~eQ---L~~A~aklEes----- 367 (670)
+.-=.+++-.|.....|.+..+..+-. |.....+.+..|.+++..+-.+++.+... +...+..+++.
T Consensus 747 ~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL 826 (1200)
T KOG0964|consen 747 GKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKL 826 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333333333333332222211 11101344555666666666666533222 22223333321
Q ss_pred -------HHHHHh-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHH
Q 005903 368 -------QEQLNE-----MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR 435 (670)
Q Consensus 368 -------E~EVaa-----LerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLK 435 (670)
+++|.+ ........+.++...+.|.+.|-..+..+...-+..+.+.+.+++ .-|++..||++.+
T Consensus 827 ~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~----~lE~~~~lek~~~ 902 (1200)
T KOG0964|consen 827 YKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKK----ELEKAKNLEKEKK 902 (1200)
T ss_pred HhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 445553 455677888888899999999998888888888888887776665 3466777777766
Q ss_pred HH
Q 005903 436 DL 437 (670)
Q Consensus 436 Ea 437 (670)
-.
T Consensus 903 ~~ 904 (1200)
T KOG0964|consen 903 DN 904 (1200)
T ss_pred hh
Confidence 54
No 347
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=25.98 E-value=5.3e+02 Score=23.78 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=46.1
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHhhhHHhhHHHHHHHhh
Q 005903 496 DNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMV--MQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (670)
Q Consensus 496 ~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV--~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (670)
....+..+...++.++-+++..--...+.-.+-+.++...++-.+... .++..++++++..+...+.+...+-.-++.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~ 83 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQA 83 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666665554444444444444443333333333 467778888888888888888886655554
No 348
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=25.93 E-value=7.5e+02 Score=29.72 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhH
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANI 523 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q 523 (670)
.-.+.++.+..++++++..+++...
T Consensus 226 ~p~e~~~~l~~~i~~l~~~~~~~~~ 250 (759)
T PF01496_consen 226 TPEEAIKELEEEIEELEKELEELEE 250 (759)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444433
No 349
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.80 E-value=4.7e+02 Score=23.13 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=51.2
Q ss_pred ccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHH
Q 005903 133 CKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQ 212 (670)
Q Consensus 133 ~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eq 212 (670)
++.+..+|-.+..+.. |..-+-+++-..+..||....+...++..+.... .|.++
T Consensus 2 ~e~lP~i~~~l~~~~~---d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~----------------------~s~ee 56 (83)
T PF07544_consen 2 IEFLPLIFDILHQISK---DPPLSSKDLDTATGSLKHKLQKARAAIRELPGID----------------------RSVEE 56 (83)
T ss_pred ccccchHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------------CCHHH
Confidence 3444455655521111 1455678888889999988888877776644211 37788
Q ss_pred HHHHHHHHHHHhhhhhhHHHhH
Q 005903 213 QRHILRMLEKSLARELDLEKKI 234 (670)
Q Consensus 213 qR~iLrMLekSla~eldLEkkL 234 (670)
|-..++.||..+++--.+=.++
T Consensus 57 q~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 57 QEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998876654443
No 350
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=25.65 E-value=4.5e+02 Score=29.25 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhh
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsR 391 (670)
..|..+|++-.++||+--+.+...+.+.......+-..|+.-..++..|+..+.+.+..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 36788889999999999999888888877766667777877788888888777776543
No 351
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.49 E-value=7.6e+02 Score=25.87 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=36.3
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHH
Q 005903 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (670)
Q Consensus 307 l~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~ 386 (670)
||..|+++-..+.+|..++=.|... +..+.-++...+.++......+..-...++.++.++.-..+.++.|.+++-
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~q----l~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQ----LRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 5566666665555554444433322 223333344444444444444444444455555555555555555555443
No 352
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=25.47 E-value=8.3e+02 Score=26.64 Aligned_cols=89 Identities=16% Similarity=0.240 Sum_probs=48.7
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHH-HHH
Q 005903 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEM-VMQ 545 (670)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~l-V~K 545 (670)
.-+++.+++++-..+. .|+++|..|. |.+ .++++|.+.+++-..+...- +-.-.++...+ .-.
T Consensus 30 k~me~~q~kL~l~~~e---------~l~~s~~ql~--ll~--~~~k~L~aE~~qwqk~~pei---i~~n~~VL~~lgkee 93 (268)
T PF11802_consen 30 KDMEECQNKLSLIGTE---------TLTDSDAQLS--LLM--MRVKCLTAELEQWQKRTPEI---IPLNPEVLLTLGKEE 93 (268)
T ss_pred HHHHHHHHHHhhcCCC---------CCCCcchhHH--HHH--HHHHHHHHHHHHHHhcCCCc---CCCCHHHHHHHHHHH
Confidence 3456777888766543 5788887666 444 48899999888876665543 11111111111 123
Q ss_pred HHHHHHHHHHHHhhhHHhhHHHHHHH
Q 005903 546 LATQRELIQKQVYSLTSENKLLVEKL 571 (670)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekL 571 (670)
|++-+-.|+.-|+..+.+|..|.+.+
T Consensus 94 lqkl~~eLe~vLs~~q~KnekLke~L 119 (268)
T PF11802_consen 94 LQKLISELEMVLSTVQSKNEKLKEDL 119 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555544433
No 353
>PRK12704 phosphodiesterase; Provisional
Probab=25.47 E-value=1.1e+03 Score=27.45 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=6.4
Q ss_pred HHHhHHHHhhHHHHH
Q 005903 519 NRANIEKAASAKEVN 533 (670)
Q Consensus 519 ~kA~q~ke~tlKeae 533 (670)
+.|...-+..++.|-
T Consensus 180 ~~~~~~a~~~a~~i~ 194 (520)
T PRK12704 180 EEAKEEADKKAKEIL 194 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 354
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.37 E-value=1.1e+02 Score=25.20 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=19.7
Q ss_pred hhhcccchhhHHHHHHHHHhhHHHHHHHH
Q 005903 490 CIVLSEDNFELKNKQSFMRDKIKILESSL 518 (670)
Q Consensus 490 c~~Lse~N~ELeEEL~~l~~~lKsLE~sl 518 (670)
+..|+..|..|..++..+...+..|....
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555566677777777777777776554
No 355
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=25.25 E-value=5.1e+02 Score=23.39 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 005903 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (670)
Q Consensus 378 IelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs 420 (670)
+..+++.+.|.+.-...|-.|+..+....+-+.-+++.|....
T Consensus 26 ~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 26 LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5566777777777777888888999999888888888777653
No 356
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.23 E-value=8.9e+02 Score=26.19 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=77.8
Q ss_pred HHHHhhhhHHHH----hhhhHHhhhccccccchhHHHHHHHhHHHHHhhh----hHHHHHhhcCChhHHHHHHHHHHHHH
Q 005903 276 AEVLMGISKEML----GRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK----DMVLQKLESTKNSEVLTMKEKVKSLE 347 (670)
Q Consensus 276 ~EvL~g~skel~----gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k----~~~Lekl~~s~esEv~sLqkKvksLE 347 (670)
-++++|+..-+- .+++..+.+|+....++..=.++|+.-.++|+++ ...|.-|.--+|.|..--.=++..|.
T Consensus 47 y~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~ 126 (258)
T PF15397_consen 47 YDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLV 126 (258)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 345555544442 3578888888888888887778888888888775 22233333336777766666888888
Q ss_pred HHHHHHHHHHHHhHhhHhh-hHHHHHhHHHHHHHHHHHHHhh
Q 005903 348 EQLKESEIRLQNANACFQT-SQEQLNEMDNFIESLKESLYGA 388 (670)
Q Consensus 348 ~qLdes~eQL~~A~aklEe-sE~EVaaLerrIelLKE~l~rA 388 (670)
.+++.....-++=-..+.+ ...+.+.|.+.++.-+++|..+
T Consensus 127 rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~ 168 (258)
T PF15397_consen 127 RQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSS 168 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877765554444433 4778899999999988888773
No 357
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=25.17 E-value=4.9e+02 Score=23.18 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=42.2
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHH
Q 005903 496 DNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQL 546 (670)
Q Consensus 496 ~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL 546 (670)
.-.+|..-|..+..-|.+|+.+..-+...-..| ..++..|..|+.++-.++
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 345888888888888899988888877777776 889999999998887766
No 358
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.99 E-value=8.6e+02 Score=27.20 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhhcCCccccccC
Q 005903 62 NLHVLLMYLLARGDDLETLVME 83 (670)
Q Consensus 62 NL~~l~M~l~~~~~d~E~~~~~ 83 (670)
.|.-.+|..+. .+|+++--.
T Consensus 47 ~L~~WL~~~~g--~~f~~p~e~ 66 (359)
T PF10498_consen 47 SLCAWLISKAG--RKFEQPQEY 66 (359)
T ss_pred HHHHHHHHhcC--CCCCCCccc
Confidence 46666777665 778855443
No 359
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.95 E-value=4.4e+02 Score=26.03 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=4.6
Q ss_pred HHHhHHHHHH
Q 005903 461 AIWDMETLIE 470 (670)
Q Consensus 461 eisdme~vIE 470 (670)
-+.|.-++|-
T Consensus 116 ~I~r~~~li~ 125 (192)
T PF05529_consen 116 VIRRVHSLIK 125 (192)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 360
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.75 E-value=6.5e+02 Score=26.61 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhHHhhHHHHHHHh
Q 005903 546 LATQRELIQKQVYSLTSENKLLVEKLQ 572 (670)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd 572 (670)
|.+..|.+.++...+.++|..|.+..+
T Consensus 184 l~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 333444444444444555555554444
No 361
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.64 E-value=5.9e+02 Score=23.87 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=32.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
++....+++++-+..|...++.|+.++....+....+...+.+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677777777777777777777777777777777776654
No 362
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.55 E-value=1.4e+03 Score=28.18 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHH
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~ 386 (670)
+|++-|...+.++|.+=...-..|+.++..++-+..+++.+..+|..|.+.+.
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~ 317 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLD 317 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777877777887777767777777777777777777777777777776654
No 363
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.31 E-value=93 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 005903 367 SQEQLNEMDNFIESLKESLYGAESRAESAE 396 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~rAEsRa~tAe 396 (670)
.|+.++.||.+++..|.....||.|+..+.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378888888889999988888888887753
No 364
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=24.09 E-value=6.3e+02 Score=25.08 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcC----------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHH
Q 005903 307 LKSKLGDFIEQLKAKDMVLQKLEST----------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQ 370 (670)
Q Consensus 307 l~sKL~~~~eqL~~k~~~Lekl~~s----------------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~E 370 (670)
+.+++.+++--+.++.++|+..... .-+==+-.+.|+..+++++...+-+|..|..++-+..++
T Consensus 27 ~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~~e 106 (136)
T PF11570_consen 27 LQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKDVQNKQNKLKAAQKELNAADEE 106 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005903 371 LNEMDNFIESLKESLYGAESRAESAEEKV 399 (670)
Q Consensus 371 VaaLerrIelLKE~l~rAEsRa~tAesKl 399 (670)
++.-.--|.---+....+++|.-.|+.||
T Consensus 107 l~~~~~al~~A~e~Rkq~eskk~dAenkl 135 (136)
T PF11570_consen 107 LNRIQAALSQAMERRKQKESKKKDAENKL 135 (136)
T ss_dssp -----HHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhcc
No 365
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=23.88 E-value=4.4e+02 Score=22.14 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQN 359 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~ 359 (670)
+.|..-|++++..++.++..++..|.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777888888888888888877654
No 366
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.44 E-value=1.7e+03 Score=28.75 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=64.7
Q ss_pred HHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhh
Q 005903 400 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (670)
Q Consensus 400 eeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rA 479 (670)
......+.|+++.+--++. .++.++......+.++++-+.-|++....|++.-- ......+-. .+.++.
T Consensus 755 ~~s~~~~iea~~~i~~~e~-------~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~-~~~~~s~~~---~~~ek~ 823 (1072)
T KOG0979|consen 755 ARSNKNNIEAERKIEKLED-------NISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTL-KREIMSPAT---NKIEKS 823 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHh-hhccccccc---cchhhH
Confidence 3444455555555544443 35666666666666667666655555443443211 111111111 010010
Q ss_pred hhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHH---HHHHHHHHHHHHHHHHHH
Q 005903 480 ESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKL---MMEMVMQLATQRELIQKQ 556 (670)
Q Consensus 480 E~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~---aE~lV~KL~~ErdrLedQ 556 (670)
. .+-....-+-.|+.+|...+..=+.+..++.+..+-+-| +.+.|..- .+.-+.++...++++++.
T Consensus 824 ~----~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ne~~vq-------~y~~r~~el~~l~~~~~~~~~~le~i~~k 892 (1072)
T KOG0979|consen 824 L----VLMKELAEEPTTMDELDQAITDELTRALKFENVNEDAVQ-------QYEVREDELRELETKLEKLSEDLERIKDK 892 (1072)
T ss_pred H----HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCChHHHH-------HHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 0 011112233445566666665555555555444333322 22223222 223344555667777777
Q ss_pred HhhhHHh
Q 005903 557 VYSLTSE 563 (670)
Q Consensus 557 L~s~kee 563 (670)
+++.++.
T Consensus 893 l~~~ke~ 899 (1072)
T KOG0979|consen 893 LSDVKEV 899 (1072)
T ss_pred HhhHHHH
Confidence 7776654
No 367
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.33 E-value=1.5e+03 Score=28.07 Aligned_cols=343 Identities=21% Similarity=0.261 Sum_probs=174.7
Q ss_pred HhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHH-----HHHHhHhhhhhhHhhHHHH----HHHHHHHHHh
Q 005903 100 LLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFT-----IMEKMEKKLHDCEGSLKES----QEHVSELKMQ 170 (670)
Q Consensus 100 lL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~-----~~~~~~~kL~~~~~sLkq~----qe~~~eik~q 170 (670)
-|+.-++-=---|..+-+-|--.=....+|+.+-.+++..|. .+.-|.+|--..++.||-- .+.+..+|.|
T Consensus 260 ~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~q 339 (739)
T PF07111_consen 260 ALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQ 339 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHH
Confidence 444433333333444333333333456678876666554433 2334666666666555422 3344555556
Q ss_pred hHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHH-HHHHHHhhhhhhHHHhHH--------HHhhhH
Q 005903 171 SAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHIL-RMLEKSLARELDLEKKIS--------ELNQNE 241 (670)
Q Consensus 171 sa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iL-rMLekSla~eldLEkkL~--------~s~~~e 241 (670)
-|.+|.-.-. ..|...|| +-|+-..| ++++|..-. -+....
T Consensus 340 VAsLQeev~s-----------------------------q~qEqaiLq~SLqDK~A-ElevERv~sktLQ~ELsrAqea~ 389 (739)
T PF07111_consen 340 VASLQEEVAS-----------------------------QQQEQAILQHSLQDKAA-ELEVERVGSKTLQAELSRAQEAR 389 (739)
T ss_pred HHHHHHHHHH-----------------------------HHHHHHHHHHHHhHHHH-HHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666654422 12222332 23333322 344444332 223333
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh
Q 005903 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK 321 (670)
Q Consensus 242 eeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k 321 (670)
..++.+-...+...+.+=+++.++.. |++. =+-..+..+.||.+..+-|+-+..|=.= +-=|-++
T Consensus 390 ~~lqqq~~~aee~Lk~v~eav~S~q~-~L~s------~ma~ve~a~aRL~sL~~RlSyAvrrv~t--------iqGL~Ar 454 (739)
T PF07111_consen 390 RRLQQQTASAEEQLKLVSEAVSSSQQ-WLES------QMAKVEQALARLPSLSNRLSYAVRRVHT--------IQGLMAR 454 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHHHHHHhHHHHHHhcccch--------hHHHHHH
Confidence 33555555555555555555544443 3332 3344566677777777777755444322 2334467
Q ss_pred hHHHHHhhcC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 005903 322 DMVLQKLEST----KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (670)
Q Consensus 322 ~~~Lekl~~s----~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAes 397 (670)
..+|..+... ..+.+-+|+--+++|=++-|....+|+.. -.++..+|-+|-+ ..++
T Consensus 455 k~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlS-----------------a~liqqeV~~ArE---qgea 514 (739)
T PF07111_consen 455 KLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLS-----------------ARLIQQEVGRARE---QGEA 514 (739)
T ss_pred HHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHH---HHHH
Confidence 7777777655 25778888888888888888877777643 2344455555554 4455
Q ss_pred HHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHH-HHhhhh
Q 005903 398 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE-DLKSKV 476 (670)
Q Consensus 398 KleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIE-dLk~Kl 476 (670)
..-.+++.+.+|+..+..-. +-+..++.||-.++-.++.+...++ -+..++.+.-.+.+ .|+.|+
T Consensus 515 E~~~Lse~aqqLE~~Lq~~q-------e~la~l~~QL~~Ar~~lqes~eea~-------~lR~EL~~QQ~~y~~alqekv 580 (739)
T PF07111_consen 515 ERQQLSEVAQQLEQELQEKQ-------ESLAELEEQLEAARKSLQESTEEAA-------ELRRELTQQQEVYERALQEKV 580 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777664221 2233444444444433333322211 12333444443443 566777
Q ss_pred hhhhhhhhhhhhhhh-hcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 005903 477 SKAESKTESVEEQCI-VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (670)
Q Consensus 477 ~rAE~RaEsaEsKc~-~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t 528 (670)
+..|+| |+ .|++.-.-||+==+-...-+.+|--...+|..+|+..
T Consensus 581 sevEsr-------l~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~ 626 (739)
T PF07111_consen 581 SEVESR-------LREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERN 626 (739)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 766665 43 2333333444433344444555555555555555444
No 368
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=23.21 E-value=1.6e+03 Score=28.36 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=5.8
Q ss_pred HHHHHHHhhhhhhhh
Q 005903 466 ETLIEDLKSKVSKAE 480 (670)
Q Consensus 466 e~vIEdLk~Kl~rAE 480 (670)
...|+++...+..+.
T Consensus 783 ~~~i~~~~~~~~~~~ 797 (1047)
T PRK10246 783 EQLKQNLENQRQQAQ 797 (1047)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444334333333
No 369
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=22.97 E-value=4.3e+02 Score=26.93 Aligned_cols=86 Identities=10% Similarity=0.025 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhcc
Q 005903 496 DNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (670)
Q Consensus 496 ~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~ 575 (670)
.|.++..++......+..++..+..+...-..+ +.+...--....-+.....+++.++.++...+.+.+.+...+.++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 136 (322)
T TIGR01730 58 DDDDYQLALQAALAQLAAAEAQLELAQRSFERA-ERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTE 136 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCE
Confidence 455666677777777776666665554432222 1111010011111233344445555566566666666666666665
Q ss_pred CCCCcee
Q 005903 576 KSSSATM 582 (670)
Q Consensus 576 k~~~~tm 582 (670)
--+|+.+
T Consensus 137 i~AP~~G 143 (322)
T TIGR01730 137 IRAPFDG 143 (322)
T ss_pred EECCCCc
Confidence 5566654
No 370
>PRK00295 hypothetical protein; Provisional
Probab=22.78 E-value=4.1e+02 Score=22.90 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q 005903 540 MEMVMQLATQRELIQKQVYSLTSENKLLV 568 (670)
Q Consensus 540 E~lV~KL~~ErdrLedQL~s~keenK~L~ 568 (670)
-+.|.+.++++++|+.++..+..+.+.+.
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688888889999999988888887765
No 371
>PF08561 Ribosomal_L37: Mitochondrial ribosomal protein L37; InterPro: IPR013870 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry includes yeast MRPL37 a mitochondrial ribosomal protein [].
Probab=22.75 E-value=38 Score=30.23 Aligned_cols=28 Identities=36% Similarity=0.499 Sum_probs=22.5
Q ss_pred hhhcccccccchhhhccCC--------CchHHHHHH
Q 005903 617 KSVQAGTHLNICRIYTRGL--------AYPEFVKKV 644 (670)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 644 (670)
-|..+|||++.+.||.-|- .||++.=.+
T Consensus 6 ss~~~gt~l~GlNi~K~g~DP~al~D~EYP~WLW~l 41 (85)
T PF08561_consen 6 SSCPAGTVLKGLNILKDGKDPVALPDSEYPEWLWTL 41 (85)
T ss_pred CcccccceeeeeeeecCCCCCccCCcchhhHHHHHh
Confidence 3788999999999998885 499986443
No 372
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=22.71 E-value=3.3e+02 Score=31.96 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005903 339 MKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (670)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLS 403 (670)
++++++.+|..+...+.++....+.+... ...++.+...++.++.+++.+..|-.....+++++.
T Consensus 561 ~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 561 LRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555544443333333211 114555555555555555555555555555444443
No 373
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=22.63 E-value=8.4e+02 Score=24.97 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (670)
.|.-|+..+...+.-|+..+.-++.+-+=| ..|-++...-+..+..++..|++.|...
T Consensus 154 ~l~ae~~~l~~~~~~le~el~s~~~rq~L~----~~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 154 LLQAELAALEAQIEMLEQELLSNNNRQELL----QLQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888777776655 3455666666777777777777776653
No 374
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.13 E-value=6e+02 Score=23.07 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=43.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~ 438 (670)
.+..++..+..-+.+..+|..|+............--..+...+..|++. ...++.+|....
T Consensus 47 ~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~-------~~k~e~~l~~~~ 108 (126)
T PF13863_consen 47 DVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSE-------ISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 44466777777888888888888887777777777777777777777764 455555555543
No 375
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=22.03 E-value=1.2e+03 Score=26.36 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh---------------------HHHHHhHHHHHHHHHHHHHhhhhhHH
Q 005903 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTS---------------------QEQLNEMDNFIESLKESLYGAESRAE 393 (670)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEes---------------------E~EVaaLerrIelLKE~l~rAEsRa~ 393 (670)
=|+..|.+++.|-++-+..+-.|.-|+.+.-.- .++-.=|+-.+|.|++++.-|| |+.
T Consensus 60 avrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaE-RtA 138 (351)
T PF07058_consen 60 AVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAE-RTA 138 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 355566666666666666666666555544211 4577778888999999999886 677
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhc
Q 005903 394 SAEEKVTQLTDTNLELSEEINFLKG 418 (670)
Q Consensus 394 tAesKleeLSeTNdELerelkvLes 418 (670)
-|++.+. +-+..-+|+|+.
T Consensus 139 kaEaQLk------eK~klRLK~LEe 157 (351)
T PF07058_consen 139 KAEAQLK------EKLKLRLKVLEE 157 (351)
T ss_pred HHHHHHH------HHHHHHHHHHHh
Confidence 7777665 455566666654
No 376
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.85 E-value=1.8e+03 Score=28.60 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=22.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ke 562 (670)
.+....+.+.++..+--|..|...|.+||.+++.
T Consensus 525 ye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 525 YELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666665
No 377
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=21.57 E-value=4.1e+02 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=26.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEK 398 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesK 398 (670)
.+++.++++.|+.+++++-++|.|++..-.+
T Consensus 7 ~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~ 37 (112)
T PF07439_consen 7 HQQLGTLNAEVKELREDIRRSEDRSAASRAS 37 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4577899999999999999999998876554
No 378
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=21.39 E-value=1.1e+03 Score=25.92 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=17.8
Q ss_pred hhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhh
Q 005903 405 TNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 445 (670)
Q Consensus 405 TNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~ 445 (670)
+..+++|..+..+.. ......++....++..++.+++.|+
T Consensus 139 a~~~~~R~~~L~~~g-~iS~~~ld~a~~~~~~a~a~l~~a~ 178 (390)
T PRK15136 139 AQSDLNRRVPLGNAN-LIGREELQHARDAVASAQAQLDVAI 178 (390)
T ss_pred HHHHHHHHHHHHHCC-CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544433 3333444444444544444444443
No 379
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.33 E-value=2.1e+02 Score=35.27 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=96.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 005903 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (670)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELer 411 (670)
+.+++..++..+..++.....+..+-. +-+++..+++-.+...+........||...+....++..
T Consensus 426 ~~s~~~~~~~~l~~~~s~~~~l~~~~~--------------~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~ 491 (847)
T KOG0998|consen 426 KTSPVLELANELSNLASTSQQLPAQKD--------------TVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDN 491 (847)
T ss_pred cccccccchhhhhhcchhhhccccccc--------------hhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccc
Confidence 345555555555444444433333222 334557777777788888888888999999999999999
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005903 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (670)
Q Consensus 412 elkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~ 491 (670)
.++.+..+-..+..=+..++++|.++..|+ +++-..+...+.-||.|+..+.-...+.....+||.
T Consensus 492 ~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~--------------~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~ 557 (847)
T KOG0998|consen 492 DLNLLPLQLSNDNREISSLEKELNELQQQL--------------SVLEGSVKAIESQVENLQKELLDLIYEMADTRSKST 557 (847)
T ss_pred hhhhcccccccchhhHHHHHHHHhhhHHHH--------------hHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccch
Confidence 988888887767777888888888877444 123333333333355555555555555555556666
Q ss_pred hcccchhhHHHHHHHHHhhHHHHHHHHHHHhHH
Q 005903 492 VLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (670)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ 524 (670)
+|..-......-...++..-...+.+
T Consensus 558 -------~l~~~~~~~~~~~~~~~~~~k~~n~~ 583 (847)
T KOG0998|consen 558 -------LLDDSFKVGMELFEQLLKGSKLVNGK 583 (847)
T ss_pred -------hhhhhhhhhhhhhhhhhhhhhccccc
Confidence 55555544444444444433333333
No 380
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.29 E-value=1.5e+03 Score=27.39 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhHhHHH
Q 005903 425 KKVGILENQLRDLEIQLQQAKVSSEASQE 453 (670)
Q Consensus 425 EK~~~LE~QLKEa~~QLqhA~asaEas~e 453 (670)
|+..-+|.||+.|..-+..|.+.-+.++.
T Consensus 394 Eec~kme~qLkkAh~~~ddar~~pe~~d~ 422 (654)
T KOG4809|consen 394 EECSKMEAQLKKAHNIEDDARMNPEFADQ 422 (654)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcChhhHHH
Confidence 45556666777666666666655555554
No 381
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.28 E-value=9.2e+02 Score=24.89 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=35.8
Q ss_pred hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHH
Q 005903 446 VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK 525 (670)
Q Consensus 446 asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~k 525 (670)
..+..++.+.+...++-..++.-++.|+..++..+.. |..|+..+...+..+.+|+.+......-+
T Consensus 35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~--------------~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVY--------------NEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445444445555555555555444444433333 33555556666666666666555555444
Q ss_pred Hhh
Q 005903 526 AAS 528 (670)
Q Consensus 526 e~t 528 (670)
...
T Consensus 101 ~~l 103 (251)
T PF11932_consen 101 QEL 103 (251)
T ss_pred HHH
Confidence 443
No 382
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=21.24 E-value=32 Score=32.68 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005903 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (670)
....+..+...++.....+..+..-+..|...+..++.....|...++.++.+... ...+-..+...+.+.++|+.
T Consensus 29 ~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~----~~~ls~nI~~IrelI~qAR~ 104 (138)
T PF06009_consen 29 WSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN----NSNLSRNISRIRELIAQARD 104 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666777777788888888888888888888888887531 12256666677767777776
Q ss_pred hhH
Q 005903 447 SSE 449 (670)
Q Consensus 447 saE 449 (670)
.|-
T Consensus 105 ~An 107 (138)
T PF06009_consen 105 AAN 107 (138)
T ss_dssp ---
T ss_pred HHh
Confidence 654
No 383
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.19 E-value=4.7e+02 Score=23.86 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHH
Q 005903 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (670)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~s 517 (670)
.++|.=+--=|++||.|-......++.+-+.-.-|...|-.|.+|...-..|+.+|=..
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555558888888666666555555555557777778888888887777776443
No 384
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.15 E-value=7.8e+02 Score=24.03 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH--------hhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACF--------QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~akl--------EesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSe 404 (670)
+.++..++-+...+-.++...+.||.+-..-- +...-+...+...|++=..++.+--.+...+..-+.-.-+
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke 84 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666665443322 2224467777777777777777777766666555554444
Q ss_pred hhHHHHHHhhhhhc
Q 005903 405 TNLELSEEINFLKG 418 (670)
Q Consensus 405 TNdELerelkvLes 418 (670)
--..+..+...++.
T Consensus 85 Kl~~~~~~~~~l~~ 98 (177)
T PF13870_consen 85 KLHFLSEELERLKQ 98 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 385
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=21.09 E-value=1.1e+03 Score=25.86 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=11.5
Q ss_pred HHhHHHHHHHHhhhhhhhhhhh
Q 005903 462 IWDMETLIEDLKSKVSKAESKT 483 (670)
Q Consensus 462 isdme~vIEdLk~Kl~rAE~Ra 483 (670)
+.....-+...+..+..++.+.
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666666553
No 386
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=20.92 E-value=1.7e+03 Score=27.93 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=28.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~ 438 (670)
.+|.+-|-|++.-|...+-. ++|+. |..-. .+-+=|+-.|++.+ -+|++||+|+-
T Consensus 393 rsENaqLrRrLrilnqqlre-qe~~~----k~~~~----~~~n~El~sLqSlN-------~~Lq~ql~es~ 447 (861)
T PF15254_consen 393 RSENAQLRRRLRILNQQLRE-QEKAE----KTSGS----QDCNLELFSLQSLN-------MSLQNQLQESL 447 (861)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HHhhc----ccCCC----cccchhhHHHHHHH-------HHHHHHHHHHH
Confidence 45666777776666555433 12211 11111 12233444566653 46888888876
No 387
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=20.90 E-value=4.8e+02 Score=23.55 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=52.6
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhh-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhcc
Q 005903 506 FMRDKIKILESSLNRANIEKAAS-------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (670)
Q Consensus 506 ~l~~~lKsLE~sl~kA~q~ke~t-------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~ 575 (670)
.|..+|..|+.-...|..++..- .....-..-+.-.++..+..++++|...+-.+..+|..|.+++....
T Consensus 31 ~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 31 DVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred hHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678888888888888888732 12223334455567778889999999999999999999999887653
No 388
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.77 E-value=6.1e+02 Score=22.64 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=39.6
Q ss_pred HHHHHhHHHHHhhhh---HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---HhhhHHHHHhHHHHHHHH
Q 005903 308 KSKLGDFIEQLKAKD---MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANAC---FQTSQEQLNEMDNFIESL 381 (670)
Q Consensus 308 ~sKL~~~~eqL~~k~---~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~ak---lEesE~EVaaLerrIelL 381 (670)
+...+...+.+..|. ..++.+-.- +.+...++.++..|-.+......++..++.. .++.-.++..+...|..+
T Consensus 8 r~n~e~v~~~l~~R~~~~~~vd~i~~l-d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 8 RENPEEVRENLKKRGGDEEDVDEIIEL-DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHcCCCHhhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence 334444444555443 222222222 4444455555555555544444444444332 222244555555556655
Q ss_pred HHHHHhhhhhHH
Q 005903 382 KESLYGAESRAE 393 (670)
Q Consensus 382 KE~l~rAEsRa~ 393 (670)
+.++...+.++.
T Consensus 87 e~~~~~~e~~l~ 98 (108)
T PF02403_consen 87 EEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 389
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.73 E-value=3.3e+02 Score=25.48 Aligned_cols=44 Identities=25% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
++=.+-.-++..+.+|..++..|..++..+.++|..|.-+.++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888888888888888888888888876665544
No 390
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=20.61 E-value=7.2e+02 Score=26.28 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=35.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 005903 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLe 417 (670)
.+++.++++....-|++++.+-...++.|..+...+.+..++++++-..|-
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 356666777777777777777777777777777777777777777666443
No 391
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.58 E-value=5.2e+02 Score=23.56 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=35.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesr 419 (670)
-..|+-|.=.|+.||++=.......+.+.+--..|...|.++..+...-..|
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777766666666666666677777777777776665553
No 392
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=20.51 E-value=1.5e+03 Score=27.04 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhh----HHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHH-
Q 005903 389 ESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGI----LENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW- 463 (670)
Q Consensus 389 EsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~----LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseis- 463 (670)
.+-++.-..|.-.+.+++.+|-+.++.|.++=..-.-|++. |+..|.++. . -..++.+-++.--.-|
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~-------~-e~~~~~r~~lekl~~~q 407 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAK-------N-EWESDERKSLEKLDQWQ 407 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHH
Confidence 33334444455555666666666666666652211223332 333444443 2 1111111111111111
Q ss_pred -hHHHHHHHHhhhhhhhhhhhhhhhhhhhhc-ccchhh-------HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHH
Q 005903 464 -DMETLIEDLKSKVSKAESKTESVEEQCIVL-SEDNFE-------LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 534 (670)
Q Consensus 464 -dme~vIEdLk~Kl~rAE~RaEsaEsKc~~L-se~N~E-------LeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~ 534 (670)
.+...+.+++.|+..-=...+..-.||... ++.|.. ..-++..|+.-+..+=.++ +..-++..--|.++.
T Consensus 408 ~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssv-Q~~~e~~~~rkiaei 486 (531)
T PF15450_consen 408 NEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSV-QLLKEDNPGRKIAEI 486 (531)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChhhhHHHH
Confidence 122444445555553333344444455422 222322 3334455555544431111 111112222478888
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 005903 535 RTKLMMEMVMQLATQREL 552 (670)
Q Consensus 535 Rak~aE~lV~KL~~Erdr 552 (670)
+-+++..-++||+.-+..
T Consensus 487 qg~l~~~qi~kle~siq~ 504 (531)
T PF15450_consen 487 QGKLATNQIMKLENSIQT 504 (531)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888776654
No 393
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.34 E-value=2.6e+02 Score=24.26 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=13.7
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 005903 384 SLYGAESRAESAEEKVTQLTDTNLELSEE 412 (670)
Q Consensus 384 ~l~rAEsRa~tAesKleeLSeTNdELere 412 (670)
+=+.+..++..|-..|..|..-++-+.++
T Consensus 34 ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 34 ERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444444444444444
No 394
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.25 E-value=5.4e+02 Score=24.41 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhh
Q 005903 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (670)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rA 388 (670)
.+|-+++.++|.++.....++..-+..+.+..+|-+.|.-.++-|.+.+.+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999888888888888777888888888888888887764
No 395
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.22 E-value=9.4e+02 Score=25.78 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=40.5
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 005903 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQ 349 (670)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~q 349 (670)
|....|.++..|..++.+++.-..+=.+|+++|+..-+....+....+ .+=+..|+++++.++.+
T Consensus 48 Lk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~------~dF~~~Lq~~Lk~V~td 112 (230)
T PF03904_consen 48 LKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVH------NDFQDILQDELKDVDTD 112 (230)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhchH
Confidence 445566677777778877777777777788888776665554433222 23334566666666443
No 396
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.20 E-value=6.6e+02 Score=22.81 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=42.0
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHH
Q 005903 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (670)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ 524 (670)
+...+..-..++.+-..+..+|..|++....... +.+.||..+...+..|.....+....
T Consensus 44 l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~-------~k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 44 LEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKE-------EKEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666777777888888888888777777 77777777777777766555554443
No 397
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.13 E-value=2.9e+02 Score=25.26 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=0.0
Q ss_pred Hhhhhhh-HHHhHHHHhhhHHHHHhhhhhhh---HHHHHHHHHHHHHHHHHHhccchHHHHhhh
Q 005903 223 SLARELD-LEKKISELNQNEEQLKLKLHHTE---QVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282 (670)
Q Consensus 223 Sla~eld-LEkkL~~s~~~eeeLk~kL~~~e---qe~~~lEE~~~~~~er~~EAENa~EvL~g~ 282 (670)
|+|.|+| ||.++..-+..-+...-||+..+ +...-||+....+.+++-.-|+-...|++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Done!