Query 005903
Match_columns 670
No_of_seqs 98 out of 107
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b9c_A Striated-muscle alpha t 99.9 3.3E-25 1.1E-29 207.6 9.1 138 374-532 1-138 (147)
2 2efr_A General control protein 99.9 5.3E-21 1.8E-25 180.9 16.3 121 426-574 1-131 (155)
3 1c1g_A Tropomyosin; contractIl 98.9 2.4E-05 8.3E-10 72.4 34.2 81 337-417 51-131 (284)
4 1c1g_A Tropomyosin; contractIl 98.7 0.00013 4.3E-09 67.6 32.8 77 338-414 87-163 (284)
5 2z5i_A TM, general control pro 98.6 7.8E-08 2.7E-12 76.6 6.0 44 531-574 2-45 (52)
6 2efr_A General control protein 98.4 4.5E-06 1.5E-10 79.4 15.6 89 342-444 1-89 (155)
7 1i84_S Smooth muscle myosin he 98.4 2.5E-07 8.6E-12 108.8 7.9 16 545-560 1148-1163(1184)
8 1i84_S Smooth muscle myosin he 98.3 3.5E-07 1.2E-11 107.7 6.2 28 543-570 1139-1166(1184)
9 3u1c_A Tropomyosin alpha-1 cha 98.3 4.7E-06 1.6E-10 73.7 10.5 52 333-384 43-101 (101)
10 1ic2_A Tropomyosin alpha chain 98.1 1.1E-05 3.9E-10 68.4 9.5 71 338-408 3-80 (81)
11 3u59_A Tropomyosin beta chain; 98.1 1.4E-05 4.8E-10 70.3 9.0 52 333-384 43-101 (101)
12 2b9c_A Striated-muscle alpha t 97.6 0.0013 4.5E-08 61.8 15.2 141 286-437 1-141 (147)
13 3u1c_A Tropomyosin alpha-1 cha 97.5 0.001 3.4E-08 58.8 11.6 81 338-418 6-93 (101)
14 3vkg_A Dynein heavy chain, cyt 97.4 0.02 6.7E-07 74.3 26.5 192 356-584 1921-2117(3245)
15 3u59_A Tropomyosin beta chain; 97.0 0.0053 1.8E-07 53.9 11.3 81 339-419 7-94 (101)
16 3mud_A DNA repair protein XRCC 96.8 0.00073 2.5E-08 65.5 3.6 46 529-574 116-168 (175)
17 3na7_A HP0958; flagellar bioge 96.7 0.12 3.9E-06 51.5 18.7 144 288-438 11-163 (256)
18 1ic2_A Tropomyosin alpha chain 96.2 0.017 5.8E-07 49.0 8.0 71 286-367 4-74 (81)
19 3vkg_A Dynein heavy chain, cyt 96.0 0.28 9.7E-06 64.0 21.3 188 308-514 1909-2103(3245)
20 3na7_A HP0958; flagellar bioge 95.8 1.6 5.5E-05 43.3 21.8 30 540-569 156-186 (256)
21 2v71_A Nuclear distribution pr 95.6 0.74 2.5E-05 45.2 18.0 70 490-567 111-180 (189)
22 3o0z_A RHO-associated protein 95.2 1.6 5.6E-05 42.2 18.3 60 423-482 4-63 (168)
23 3o0z_A RHO-associated protein 94.5 0.9 3.1E-05 43.9 14.8 112 298-416 19-137 (168)
24 2v71_A Nuclear distribution pr 93.5 4.5 0.00016 39.7 17.7 22 339-360 22-43 (189)
25 2dfs_A Myosin-5A; myosin-V, in 93.1 1.9 6.4E-05 51.4 17.1 71 363-443 971-1041(1080)
26 2fxo_A Myosin heavy chain, car 92.5 2.2 7.4E-05 38.8 13.0 107 461-567 14-123 (129)
27 2fxo_A Myosin heavy chain, car 92.3 2.4 8.2E-05 38.5 13.1 80 334-413 34-113 (129)
28 3oja_B Anopheles plasmodium-re 92.0 2.3 8E-05 45.5 14.7 130 367-520 454-583 (597)
29 3mtu_E Head morphogenesis prot 90.9 0.19 6.4E-06 43.3 3.8 29 546-574 42-70 (77)
30 2dfs_A Myosin-5A; myosin-V, in 90.1 3.6 0.00012 49.0 15.0 19 53-71 454-475 (1080)
31 3oja_B Anopheles plasmodium-re 88.9 13 0.00043 39.9 16.9 75 499-573 506-583 (597)
32 3bas_A Myosin heavy chain, str 83.3 8.2 0.00028 33.2 9.7 28 392-419 58-85 (89)
33 2ocy_A RAB guanine nucleotide 79.9 32 0.0011 32.8 13.3 35 370-404 59-93 (154)
34 2ocy_A RAB guanine nucleotide 79.2 18 0.0006 34.6 11.3 39 221-259 9-47 (154)
35 3hnw_A Uncharacterized protein 76.8 8.4 0.00029 35.8 8.2 50 368-417 81-130 (138)
36 3i00_A HIP-I, huntingtin-inter 76.1 6.5 0.00022 36.0 7.1 101 298-401 6-110 (120)
37 2k48_A Nucleoprotein; viral pr 75.0 12 0.00042 33.9 8.4 57 333-389 34-102 (107)
38 2e7s_A RAB guanine nucleotide 73.4 7.1 0.00024 36.6 6.7 21 384-404 61-81 (135)
39 3mq9_A Bone marrow stromal ant 71.9 20 0.00067 37.6 10.5 71 376-449 397-467 (471)
40 3tnu_B Keratin, type II cytosk 71.9 15 0.00053 33.1 8.5 20 367-386 34-53 (129)
41 1gd2_E Transcription factor PA 69.7 7.9 0.00027 32.5 5.6 48 519-566 21-68 (70)
42 2ic6_A Nucleocapsid protein; h 69.4 20 0.00069 30.9 8.1 55 334-388 5-71 (78)
43 2zqm_A Prefoldin beta subunit 69.3 46 0.0016 28.6 10.6 38 529-566 72-109 (117)
44 3hnw_A Uncharacterized protein 66.7 28 0.00094 32.3 9.2 54 338-391 79-132 (138)
45 2ic9_A Nucleocapsid protein; h 64.6 24 0.00083 31.5 7.9 57 334-390 5-73 (96)
46 2i1j_A Moesin; FERM, coiled-co 63.8 16 0.00056 40.5 8.3 29 462-490 428-456 (575)
47 2k48_A Nucleoprotein; viral pr 63.0 7.1 0.00024 35.4 4.2 74 279-353 26-101 (107)
48 3tnu_A Keratin, type I cytoske 63.0 26 0.00089 31.7 8.1 19 368-386 37-55 (131)
49 2v4h_A NF-kappa-B essential mo 62.7 65 0.0022 29.4 10.4 82 468-564 25-106 (110)
50 1fxk_A Prefoldin; archaeal pro 59.8 79 0.0027 26.7 10.3 36 529-564 67-102 (107)
51 3tnu_B Keratin, type II cytosk 58.4 1E+02 0.0036 27.6 12.0 78 333-410 35-116 (129)
52 2i1j_A Moesin; FERM, coiled-co 57.4 11 0.00037 41.9 5.5 17 377-393 364-380 (575)
53 4fi5_A Nucleoprotein; structur 57.3 40 0.0014 30.8 8.1 56 335-390 23-90 (113)
54 3tnu_A Keratin, type I cytoske 56.9 98 0.0034 27.9 10.8 78 333-410 37-118 (131)
55 2ic6_A Nucleocapsid protein; h 56.7 13 0.00043 32.2 4.5 65 378-446 7-73 (78)
56 3mq9_A Bone marrow stromal ant 56.5 1.7E+02 0.0058 30.5 14.1 71 426-513 398-468 (471)
57 3azd_A Short alpha-tropomyosin 55.7 4.4 0.00015 30.2 1.4 31 334-364 4-34 (37)
58 2jee_A YIIU; FTSZ, septum, coi 55.6 40 0.0014 29.2 7.5 59 459-517 19-77 (81)
59 3mq7_A Bone marrow stromal ant 54.5 1.3E+02 0.0046 27.7 11.1 23 339-361 23-45 (121)
60 1sjj_A Actinin; 3-helix bundle 53.6 2.8E+02 0.0096 31.2 26.7 265 108-397 306-599 (863)
61 4fi5_A Nucleoprotein; structur 52.4 15 0.00051 33.7 4.5 66 378-447 24-91 (113)
62 2v66_B Nuclear distribution pr 50.4 1.5E+02 0.005 27.0 12.7 31 338-368 53-83 (111)
63 2ic9_A Nucleocapsid protein; h 50.2 18 0.0006 32.4 4.5 66 377-446 6-73 (96)
64 1jcd_A Major outer membrane li 49.9 54 0.0019 26.2 6.9 28 367-394 23-50 (52)
65 2v4h_A NF-kappa-B essential mo 46.5 1.7E+02 0.0059 26.7 10.4 52 305-357 27-78 (110)
66 3bas_A Myosin heavy chain, str 45.0 1.5E+02 0.005 25.4 10.2 30 462-491 16-45 (89)
67 3a7o_A Autophagy protein 16; c 44.9 1E+02 0.0034 26.4 8.1 31 546-576 44-74 (75)
68 4ev6_A Magnesium transport pro 44.1 2.2E+02 0.0074 28.9 12.2 60 99-180 156-215 (339)
69 3mov_A Lamin-B1; LMNB1, B-type 43.3 58 0.002 28.5 6.7 64 329-402 7-70 (95)
70 3htk_A Structural maintenance 42.4 1.2E+02 0.004 23.6 8.2 50 336-385 7-56 (60)
71 3efg_A Protein SLYX homolog; x 42.2 52 0.0018 27.9 6.1 47 528-574 15-61 (78)
72 4dvz_A Cytotoxicity-associated 41.2 4E+02 0.014 29.4 15.0 70 229-298 358-440 (569)
73 1m1j_B Fibrinogen beta chain; 41.2 2.4E+02 0.0083 31.0 12.6 30 461-490 169-198 (464)
74 4emc_A Monopolin complex subun 41.1 40 0.0014 33.3 5.9 45 314-358 11-65 (190)
75 1go4_E MAD1 (mitotic arrest de 38.9 1.3E+02 0.0045 26.9 8.3 59 499-560 23-94 (100)
76 3mq7_A Bone marrow stromal ant 37.8 90 0.0031 28.9 7.3 70 374-446 23-92 (121)
77 3s4r_A Vimentin; alpha-helix, 37.6 1.4E+02 0.0049 25.8 8.3 29 391-419 17-45 (93)
78 1x79_B RAB GTPase binding effe 36.2 2.5E+02 0.0086 25.5 10.1 72 493-571 36-107 (112)
79 2lw1_A ABC transporter ATP-bin 36.1 1.1E+02 0.0038 25.8 7.3 58 335-393 23-80 (89)
80 1t2k_D Cyclic-AMP-dependent tr 36.1 1.3E+02 0.0045 23.8 7.2 44 519-562 14-57 (61)
81 1v9d_A Diaphanous protein homo 35.8 2.1E+02 0.0071 29.3 10.6 108 59-182 176-283 (340)
82 3qh9_A Liprin-beta-2; coiled-c 35.8 1.3E+02 0.0046 26.1 7.6 32 334-365 26-57 (81)
83 3cve_A Homer protein homolog 1 35.7 1.5E+02 0.0051 25.1 7.8 35 325-360 6-40 (72)
84 4emc_A Monopolin complex subun 34.3 1E+02 0.0034 30.5 7.5 46 478-523 10-55 (190)
85 3t98_B Nucleoporin NUP58/NUP45 34.1 1.5E+02 0.0052 25.9 7.9 69 499-567 16-84 (93)
86 1m1j_B Fibrinogen beta chain; 33.5 3.2E+02 0.011 30.1 12.0 10 557-566 335-344 (464)
87 3i00_A HIP-I, huntingtin-inter 32.9 1.6E+02 0.0053 26.9 8.1 19 473-491 91-109 (120)
88 1deq_A Fibrinogen (alpha chain 32.7 4E+02 0.014 28.9 12.3 55 461-515 135-189 (390)
89 4abm_A Charged multivesicular 32.6 2.3E+02 0.0078 24.0 9.8 33 528-560 46-78 (79)
90 3jsv_C NF-kappa-B essential mo 31.9 2.4E+02 0.0084 25.0 8.8 87 469-570 4-90 (94)
91 3jsv_C NF-kappa-B essential mo 31.8 1.5E+02 0.0051 26.4 7.5 78 305-383 5-89 (94)
92 1lwu_C Fibrinogen gamma chain; 31.5 84 0.0029 33.0 6.9 47 340-386 4-50 (323)
93 2jee_A YIIU; FTSZ, septum, coi 31.5 2.6E+02 0.0088 24.2 10.1 64 336-399 15-78 (81)
94 3azd_A Short alpha-tropomyosin 31.3 15 0.0005 27.4 0.9 31 369-399 4-34 (37)
95 3etw_A Adhesin A; antiparallel 30.7 2.7E+02 0.0092 25.5 9.3 53 506-558 6-58 (119)
96 3swy_A Cyclic nucleotide-gated 30.7 1.5E+02 0.005 23.3 6.4 44 338-384 2-45 (46)
97 4dnd_A Syntaxin-10, SYN10; str 30.7 2.4E+02 0.0082 25.8 9.0 64 406-480 62-125 (130)
98 1l8d_A DNA double-strand break 29.7 2.6E+02 0.009 23.8 10.7 22 499-520 21-42 (112)
99 3ghg_A Fibrinogen alpha chain; 28.0 1.9E+02 0.0065 32.6 9.1 20 225-244 57-76 (562)
100 1gl2_D Syntaxin 8, vesicle tra 27.1 1.9E+02 0.0064 22.9 6.8 55 348-402 9-63 (65)
101 3ol1_A Vimentin; structural ge 27.1 3.4E+02 0.012 24.2 12.2 79 333-418 19-104 (119)
102 2oqq_A Transcription factor HY 26.5 1.6E+02 0.0054 22.9 5.8 39 527-572 3-41 (42)
103 2zqm_A Prefoldin beta subunit 26.4 3E+02 0.01 23.4 9.3 20 338-357 74-93 (117)
104 3ghg_A Fibrinogen alpha chain; 26.4 4E+02 0.014 30.1 11.3 27 534-560 131-157 (562)
105 1jnm_A Proto-oncogene C-JUN; B 25.6 1.9E+02 0.0064 23.0 6.5 44 518-561 13-56 (62)
106 3nmd_A CGMP dependent protein 25.6 2.1E+02 0.0071 24.4 7.0 43 345-387 23-65 (72)
107 4etp_A Kinesin-like protein KA 25.5 1E+02 0.0034 32.8 6.3 19 600-618 236-254 (403)
108 2eqb_B RAB guanine nucleotide 25.3 3.6E+02 0.012 24.0 11.4 14 469-482 28-41 (97)
109 1ux5_A BNI1 protein; structura 25.0 2.2E+02 0.0074 29.8 8.7 106 63-182 261-368 (411)
110 3cvf_A Homer-3, homer protein 24.9 2E+02 0.0069 24.7 6.9 36 324-360 11-46 (79)
111 1fxk_A Prefoldin; archaeal pro 24.6 3.1E+02 0.011 23.0 8.7 21 306-326 19-39 (107)
112 3htk_B Structural maintenance 24.4 2.9E+02 0.0099 22.5 8.8 65 341-405 4-68 (73)
113 2akf_A Coronin-1A; coiled coil 24.2 61 0.0021 23.6 2.9 18 541-558 13-30 (32)
114 1dh3_A Transcription factor CR 24.1 1.7E+02 0.0057 23.1 5.9 39 518-563 13-51 (55)
115 2e7s_A RAB guanine nucleotide 23.8 87 0.003 29.4 4.8 25 377-401 47-71 (135)
116 4h22_A Leucine-rich repeat fli 23.8 2.2E+02 0.0076 25.7 7.2 47 372-418 26-72 (103)
117 1t2k_D Cyclic-AMP-dependent tr 23.7 76 0.0026 25.2 3.8 35 483-517 24-58 (61)
118 4gkw_A Spindle assembly abnorm 23.1 4.9E+02 0.017 24.7 18.1 60 330-389 7-66 (167)
119 2nps_D Syntaxin-6; vesicle fus 22.8 2.2E+02 0.0075 23.7 6.7 56 350-405 21-76 (82)
120 1wt6_A Myotonin-protein kinase 22.3 2.3E+02 0.0078 24.6 6.7 34 475-515 39-72 (81)
121 1t6f_A Geminin; coiled-coil, c 21.5 82 0.0028 23.8 3.3 26 544-569 10-35 (37)
122 3fpp_A Macrolide-specific effl 20.9 3.2E+02 0.011 26.9 8.7 29 339-367 67-95 (341)
123 4dk0_A Putative MACA; alpha-ha 20.9 3.5E+02 0.012 26.9 9.0 26 341-366 70-95 (369)
124 3swf_A CGMP-gated cation chann 20.7 2.6E+02 0.0089 23.9 6.6 45 338-385 4-48 (74)
125 1x8y_A Lamin A/C; structural p 20.4 3.6E+02 0.012 22.8 7.6 60 334-403 3-62 (86)
126 1uix_A RHO-associated kinase; 20.3 4E+02 0.014 22.6 9.8 64 339-402 2-65 (71)
127 3c9i_A Tail needle protein GP2 20.2 6.5E+02 0.022 25.4 10.4 62 338-399 81-142 (242)
128 1m1j_C Fibrinogen gamma chain; 20.2 4.8E+02 0.016 28.1 10.3 9 558-566 268-276 (409)
129 4dk0_A Putative MACA; alpha-ha 20.1 3.1E+02 0.011 27.3 8.4 10 574-583 155-164 (369)
130 1gk4_A Vimentin; intermediate 20.0 3.9E+02 0.013 22.4 10.6 68 335-412 2-69 (84)
No 1
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=99.91 E-value=3.3e-25 Score=207.62 Aligned_cols=138 Identities=22% Similarity=0.321 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHH
Q 005903 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (670)
Q Consensus 374 LerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e 453 (670)
|+|+|++|++++.+|++|+.+|..||..++++++|++|.+++|++|+..+++|++.||.||++++ .+|+++++
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-------~~aeeadr 73 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-------HIAEDADR 73 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999988 99999999
Q ss_pred HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH
Q 005903 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV 532 (670)
Q Consensus 454 qQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKea 532 (670)
+|++++|+++|++ ++|.||+.|++.+|+||. +|+++|+.++++|||||++..+|+++++.|-..|
T Consensus 74 ----KyeE~~RKl~~~E---~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 74 ----KYEEVARKLVIIE---SDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp ----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999 9999999999999999999999999999996554
No 2
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=99.86 E-value=5.3e-21 Score=180.89 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=117.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHH
Q 005903 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (670)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~ 505 (670)
||+.||.|||++ ++++++ +|++++| +| ++|+|||+|++.+|+||. +|+++|+
T Consensus 1 r~~~lE~qlkea----------ae~ad~----KyeEvaR----~E---~dLEraEERae~aE~k~~-------eLEeeL~ 52 (155)
T 2efr_A 1 RMKQLEDKVEEL----------LSKNYH----LENEVAR----LK---KLLERAEERAELSEGKSA-------ELEEELK 52 (155)
T ss_dssp CHHHHHHHHHHH----------HHHHHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHhHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 588999999985 689999 9999999 77 999999999999999999 9999999
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 506 FMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 506 ~l~~~lKsLE~sl~kA~q~ke~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
.+++++||||++..+|+++++.| +|++++|++|++|.|++|++++|+|++.|.+.+.+|+.+.++||+|
T Consensus 53 ~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~t 131 (155)
T 2efr_A 53 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQL 131 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999986
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.88 E-value=2.4e-05 Score=72.42 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 005903 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (670)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvL 416 (670)
..+...+..+...+.....++..+...+...+.++..+..++..+...+.+.+.++.....++..+...-.++...+..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (284)
T 1c1g_A 51 KATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVI 130 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555555555555555555555555555555444444444444
Q ss_pred h
Q 005903 417 K 417 (670)
Q Consensus 417 e 417 (670)
.
T Consensus 131 ~ 131 (284)
T 1c1g_A 131 E 131 (284)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.70 E-value=0.00013 Score=67.61 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelk 414 (670)
.+..++..++.++.....++......+......+..+...+..+...+...+.....+..++..+......+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (284)
T 1c1g_A 87 SLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333344444444444444444444444444444444333333333333
No 5
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=98.57 E-value=7.8e-08 Score=76.60 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=42.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
++-+||+||||+|+||+++||||++.+++.|++|+.+++++|+|
T Consensus 2 ~~~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 2 ELLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999997
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=98.44 E-value=4.5e-06 Score=79.36 Aligned_cols=89 Identities=25% Similarity=0.349 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 005903 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (670)
Q Consensus 342 KvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~ 421 (670)
++.+||.||+++ ...|.-+. .+++- ++.++.|||+|+..|++||..|...-.-....+|.|+.+..
T Consensus 1 r~~~lE~qlkea---ae~ad~Ky----eEvaR-------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~see 66 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLE----NEVAR-------LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAE 66 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 356788888877 33333333 34444 99999999999999999999998887777777777777655
Q ss_pred CcchhhhhHHHHHHHHHHHHHHh
Q 005903 422 SNTKKVGILENQLRDLEIQLQQA 444 (670)
Q Consensus 422 ~deEK~~~LE~QLKEa~~QLqhA 444 (670)
..++|.+..|.|+|.+..+|..|
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554333333
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.42 E-value=2.5e-07 Score=108.84 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 005903 545 QLATQRELIQKQVYSL 560 (670)
Q Consensus 545 KL~~ErdrLedQL~s~ 560 (670)
.|..+++.|..+|..+
T Consensus 1148 ~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1148 DLSEELEALKTELEDT 1163 (1184)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.33 E-value=3.5e-07 Score=107.66 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHhhHHHHHH
Q 005903 543 VMQLATQRELIQKQVYSLTSENKLLVEK 570 (670)
Q Consensus 543 V~KL~~ErdrLedQL~s~keenK~L~ek 570 (670)
..++..++++|+.++..++.+...+..-
T Consensus 1139 ~~~le~q~~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S 1139 RNKAEKQKRDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4455666667777777666666655443
No 9
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=98.27 E-value=4.7e-06 Score=73.65 Aligned_cols=52 Identities=8% Similarity=0.279 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKE~ 384 (670)
+.|+.+|++|++.+|++|+.++.+|..|+.+++.. +++|++|+|||++|+++
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 78999999999999999999999999999999875 67999999999999874
No 10
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=98.13 E-value=1.1e-05 Score=68.44 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdE 408 (670)
.+.+|++.+..+.+.+..++..+..++... +++|.+|+++|+.|+++++++++|+..|..||..+++++++
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~~ 80 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATD 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999999888888664 77999999999999999999999999999999999987653
No 11
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=98.05 E-value=1.4e-05 Score=70.29 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHHHHhHHHHHHHHHHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKE~ 384 (670)
+.|+.+|++|++.+|++++.++.+|..++.+++.. +++|++|+|||++|+++
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEEe 101 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 68999999999999999999999999999888764 77999999999999874
No 12
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=97.63 E-value=0.0013 Score=61.83 Aligned_cols=141 Identities=24% Similarity=0.261 Sum_probs=96.1
Q ss_pred HHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q 005903 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (670)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (670)
|.-|+|.++-+|.-+.-|=.....||..+.......+....-|+.. -..--+|+..||.+|++.......|
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r----~~~deEr~~~lE~qLkeak~~aeea----- 71 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR----AQKDEEKMEIQEIQLKEAKHIAEDA----- 71 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3467888888888888777777777777766555544444444432 1122346666666666555554444
Q ss_pred hhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHH
Q 005903 366 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDL 437 (670)
Q Consensus 366 esE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa 437 (670)
........|++..++.++.+|+.|+..++++|..|...-.-....++.|+-.......|-+..|.+++..
T Consensus 72 --drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 72 --DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 4455578899999999999999999999999999999999999999999988776677777777777654
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.49 E-value=0.001 Score=58.81 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhH-------hhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACF-------QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~akl-------EesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELe 410 (670)
...+|++.|-.+.+.+......+..++ +..+.+|++|+++|+.++++++++++++..|..++....+...+.+
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677776666666666655544444 3458899999999999999999999999999999999999999888
Q ss_pred HHhhhhhc
Q 005903 411 EEINFLKG 418 (670)
Q Consensus 411 relkvLes 418 (670)
.+...|--
T Consensus 86 ~ev~~L~R 93 (101)
T 3u1c_A 86 SEVASLNR 93 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.42 E-value=0.02 Score=74.34 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=128.3
Q ss_pred HHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHH
Q 005903 356 RLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR 435 (670)
Q Consensus 356 QL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLK 435 (670)
.+..--.|+.++.++|+.|+..+..++-++..+...++....+...-++.+++-+.... ..+.++.
T Consensus 1921 rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~--------------~~~~~~~ 1986 (3245)
T 3vkg_A 1921 HLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDAR--------------ELQVQLD 1986 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 34455566777788888888888888888887776666655555544444333222211 1111111
Q ss_pred HHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHH--HHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHH
Q 005903 436 DLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLI--EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (670)
Q Consensus 436 Ea~~QLqhA~asaEas~eqQ~mkyseisdme~vI--EdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKs 513 (670)
+. ...+.+..++.+ +|+..+. +=++.++..||.+++.++.+.. +...+|+.+..++..
T Consensus 1987 ~~---~~ei~~~k~~~e----------~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~-------~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1987 VR---NKEIAVQKVKAY----------ADLEKAEPTGPLREEVEQLENAANELKLKQD-------EIVATITALEKSIAT 2046 (3245)
T ss_dssp HH---HHHHHHHHHHHH----------HCC-------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHH----------HHHhhcCCCChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 11 011111111111 1111111 5667788888888888888888 889999999999999
Q ss_pred HHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhccCCCCceecc
Q 005903 514 LESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYN 584 (670)
Q Consensus 514 LE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T~k~~~~tm~~ 584 (670)
|+...+++..+|..- ++....|-.-|++++..|..|+.|=..++..++.+++.|...+==+ +.|.-|.
T Consensus 2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLa---aafisY~ 2117 (3245)
T 3vkg_A 2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLA---SAFLAYI 2117 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHH---HHHHHHc
Confidence 999999998888876 6667778899999999999999999999999999888886665433 4555554
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.05 E-value=0.0053 Score=53.92 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh-------HhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 005903 339 MKEKVKSLEEQLKESEIRLQNANAC-------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (670)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ak-------lEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELer 411 (670)
..+|++.|-.+.+.+......+..+ .+..+.+|.+++++|+.++.++++++.++..+..++....+...+.+.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455665555555555554444333 344588999999999999999999999999999999999999999999
Q ss_pred HhhhhhcC
Q 005903 412 EINFLKGN 419 (670)
Q Consensus 412 elkvLesr 419 (670)
++..|--|
T Consensus 87 evasLnRr 94 (101)
T 3u59_A 87 EVASLNRR 94 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877553
No 16
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=96.75 E-value=0.00073 Score=65.52 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=44.4
Q ss_pred HHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 529 AKEVNHRTK-------LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 529 lKeae~Rak-------~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
+|.+..|++ ++++.|++|++++|+|++.+..+|++|+.+.++||+|
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999 9999999999999999999999999999999999997
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.67 E-value=0.12 Score=51.52 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=87.4
Q ss_pred hhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh-
Q 005903 288 GRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT- 366 (670)
Q Consensus 288 gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe- 366 (670)
-.||.+-..+.....+=..+...+.....++......+..+. .++..+...++.+|.+++....++...+..+..
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~----~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE----EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345666666665555555566666666666555555555443 345555556666666666555555554444432
Q ss_pred --------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 005903 367 --------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (670)
Q Consensus 367 --------sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~ 438 (670)
...++..+.++|..+++++.....+.+.....+..+...-.++...+..++.. -+..+..++.++....
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL---VENEVKNIKETQQIIF 163 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 25577777788888888888777777777777777777777777666666554 2344455555554443
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=96.17 E-value=0.017 Score=48.96 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=48.9
Q ss_pred HHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q 005903 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (670)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (670)
+..|++.++.+.-.+.-|=..+..+|+... ....++ ++|+.+|++|++.||++|+.++++|..|..+|+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e-------~~~~~~----E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAE-------ERSKQL----EDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665444444333444443333 333222 688999999999999999999999999999988
Q ss_pred hh
Q 005903 366 TS 367 (670)
Q Consensus 366 es 367 (670)
..
T Consensus 73 ea 74 (81)
T 1ic2_A 73 LA 74 (81)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.98 E-value=0.28 Score=64.04 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=89.7
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHH----HHH
Q 005903 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES----LKE 383 (670)
Q Consensus 308 ~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel----LKE 383 (670)
..|-+...++...-..=|+||.++ .+.|..|++++...+.+|.+.......+-.+......++..-....+. +..
T Consensus 1909 ~~K~~el~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1909 NEKRDQLEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555557778888887 788888888888888877776655443322222111111111111111 112
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHH---HhhhHH
Q 005903 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ---QSMLYS 460 (670)
Q Consensus 384 ~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eq---Q~mkys 460 (670)
+...+..+.+.|+..+.++.=+ .--.+++..+|.+|..++.+|+.+++-..+-+.+ -...|+
T Consensus 1988 ~~~ei~~~k~~~e~dL~~A~Pa---------------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1988 RNKEIAVQKVKAYADLEKAEPT---------------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333333333333222 0112445556666666665555544333222211 111233
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH
Q 005903 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (670)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsL 514 (670)
+... =.+.|+.+++..+.|.+.|+.=+.+|+..+--=.+.+..++..++.|
T Consensus 2053 ~~~~---ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2053 TLIR---ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 2211 12334456666666666666667777766666666666665555554
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.82 E-value=1.6 Score=43.29 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hHHhhHHHHH
Q 005903 540 MEMVMQLATQRELIQKQVYS-LTSENKLLVE 569 (670)
Q Consensus 540 E~lV~KL~~ErdrLedQL~s-~keenK~L~e 569 (670)
+.-+..|..+|+.|-..|-. +-..|..|..
T Consensus 156 ~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 156 KETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33445555666666666543 4555655543
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.62 E-value=0.74 Score=45.18 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=36.7
Q ss_pred hhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHH
Q 005903 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (670)
Q Consensus 490 c~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L 567 (670)
|.-|=-.|-+|+-..+...+.+.++|..+++|-++..=-=-|+. + -..|..+++||.|++.-++.+...+
T Consensus 111 ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~------E--Ke~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 111 VRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD------E--KESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHCCC-----------------
T ss_pred HHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555567788888888999999999999988877654433333 2 2255667777777777777766553
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.17 E-value=1.6 Score=42.19 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=38.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 005903 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (670)
Q Consensus 423 deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~R 482 (670)
-++|+..||+||.|++..|..=.-.+.-...+|...--.++..+..+-||++++...+.-
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~ 63 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS 63 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977765555555555566666667788888888888886655544
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.54 E-value=0.9 Score=43.93 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=80.4
Q ss_pred cccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh-------HHH
Q 005903 298 NGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQ 370 (670)
Q Consensus 298 ~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~E 370 (670)
|..-+.|+|--.||+..-..+ .+--++-+.-++.|++++..|+..-+..+-++....+.++.= .+.
T Consensus 19 n~kLk~EsE~~~rlkK~~tEl-------~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~ 91 (168)
T 3o0z_A 19 NDLLRTESDTAVRLRKSHTEM-------SKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554443333 222222356788999999999999888888888777777552 557
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 005903 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (670)
Q Consensus 371 VaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvL 416 (670)
+++|+.+|..|.+++.+.-.|...+......|.+--..++.+...+
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999888888877777766655433
No 24
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.50 E-value=4.5 Score=39.68 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 005903 339 MKEKVKSLEEQLKESEIRLQNA 360 (670)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A 360 (670)
+..++..++..|+++++.-..-
T Consensus 22 ~~q~~~~le~El~EFqesSrEL 43 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSREL 43 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655554433
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.13 E-value=1.9 Score=51.40 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=37.0
Q ss_pred hHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHH
Q 005903 363 CFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (670)
Q Consensus 363 klEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLq 442 (670)
.++..+.+....+..+..|++++...+...+.+....+.+.+.++++...+. +|+..|++.....+.|+.
T Consensus 971 ~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~----------~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE----------QLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555555555555555555555555555555543222 456666665555554443
Q ss_pred H
Q 005903 443 Q 443 (670)
Q Consensus 443 h 443 (670)
.
T Consensus 1041 ~ 1041 (1080)
T 2dfs_A 1041 E 1041 (1080)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.50 E-value=2.2 Score=38.80 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=71.4
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHH
Q 005903 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTK 537 (670)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t---lKeae~Rak 537 (670)
+++.+..=+..|+.++.+.+.+-.-.|.+..-|...-..|...|..-+.++...|....+...++... ++++..|-+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666677777777776777777775555555566666666666666666666555555443 777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHHH
Q 005903 538 LMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (670)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQL~s~keenK~L 567 (670)
-.++....|..+...|++++..+++...-+
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777776655443
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.34 E-value=2.4 Score=38.53 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerel 413 (670)
..-..|..+...|..+......||+.-...+..++.....|..+-..|+..+...++|+..-+..+..|+..-..+..++
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777777776666666666666666666666666666655555554444444444333333333
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.97 E-value=2.3 Score=45.50 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=70.7
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005903 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (670)
.++++..++..++.|++++.+.+........++.. .+..++.......+..+.+++..+..+.. +|..
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~ 521 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT----------NLRRYRLPKDGLARSSDNLNKVFTHLKER--QAFK 521 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHTTCCCCSSSCHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhcCccccccCCHHHHHHHHHHHHHhh--hhhh
Confidence 34566666777777777776666555555554332 22222222111122233344433333211 1111
Q ss_pred hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHH
Q 005903 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (670)
Q Consensus 447 saEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~k 520 (670)
. ..-++ ....+..+....+.++.+..+-|.+.+....+.. ++.+|+.-.+..++.|+..+.+
T Consensus 522 ~-~~~~~----~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~-------~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 522 L-RETQA----RRTEADAKQKETEDLEQENIALEKQLDNKRAKQA-------ELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp H-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTC-
T ss_pred H-HHHHH----HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 1 11111 2334555555666666777777777777777787 8888888888888888876654
No 29
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=90.88 E-value=0.19 Score=43.27 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 546 LATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
.+++||+|++.++..|++|+.+.++||+|
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999999999999999987
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.06 E-value=3.6 Score=49.04 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=12.9
Q ss_pred cccchhhh---hhHHHHHHHHH
Q 005903 53 LAYSSEKL---VNLHVLLMYLL 71 (670)
Q Consensus 53 la~~SEKl---~NL~~l~M~l~ 71 (670)
+-|+-||| +|-|+|.++-.
T Consensus 454 INy~NEkLQq~F~~~~f~~Eqe 475 (1080)
T 2dfs_A 454 INYANEKLQQQFNMHVFKLEQE 475 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHhhHHHHH
Confidence 45777887 56677776544
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.86 E-value=13 Score=39.91 Aligned_cols=75 Identities=8% Similarity=0.092 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhh
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (670)
.+++++..+..+...++..+.+..+..... .+.++....-+++-...-...+.++..++...+.+.+.+.++++.
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566666666666665555554444333222 333334444555555555555556666666666666666655554
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.26 E-value=8.2 Score=33.18 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 005903 392 AESAEEKVTQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 392 a~tAesKleeLSeTNdELerelkvLesr 419 (670)
+..|+.+|..|.....+|+..++.|..|
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888877654
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.91 E-value=32 Score=32.79 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=15.7
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 005903 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (670)
Q Consensus 370 EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSe 404 (670)
++..|...+..=...-..||.+....+..++.||.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445555555555555543
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.16 E-value=18 Score=34.58 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=28.7
Q ss_pred HHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHH
Q 005903 221 EKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRME 259 (670)
Q Consensus 221 ekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lE 259 (670)
=.+|.+-.+||..|..+|..-+..+.++...+.....+.
T Consensus 9 I~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~ 47 (154)
T 2ocy_A 9 IESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYN 47 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888887777777777666554433
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.84 E-value=8.4 Score=35.77 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 005903 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLe 417 (670)
+.++..+...|.+||.++..+..++..+..+++.+.+-+.+|.+++.-|+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667777777777777777777766666666666666555443
No 36
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=76.12 E-value=6.5 Score=35.98 Aligned_cols=101 Identities=27% Similarity=0.328 Sum_probs=50.4
Q ss_pred cccccchhH-HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHH
Q 005903 298 NGSLQRESE-LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN 376 (670)
Q Consensus 298 ~as~~REse-l~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer 376 (670)
+|+..-+.| +..-|+.-++.|. ..++.+....-.-+..|...|..||-+|++..-+.+.|....+....++..+.+
T Consensus 6 ~~~~~d~rD~~Ie~Lkreie~lk---~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 6 NGVNKDEKDHLIERLYREISGLK---AQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp ----CCTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434444 5555666665555 344544444458889999999999999999998888887776666556555533
Q ss_pred HHHHH---HHHHHhhhhhHHHHHHHHHH
Q 005903 377 FIESL---KESLYGAESRAESAEEKVTQ 401 (670)
Q Consensus 377 rIelL---KE~l~rAEsRa~tAesKlee 401 (670)
....- ...+..+|.|++.++.+...
T Consensus 83 ~~~~~~~~q~~~~e~E~kAqa~Eerf~K 110 (120)
T 3i00_A 83 QREDTEKAQRSLSEIERKAQANEQRYSK 110 (120)
T ss_dssp TCC-------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 33345666666666655543
No 37
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=75.02 E-value=12 Score=33.88 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHHHHHhhh
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAE 389 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKE~l~rAE 389 (670)
-+.+..|++-+...|.||-.+.-.|.+|....|.- .+.|++++..|.+||..+..+-
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999998777652 6689999999999998886553
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.44 E-value=7.1 Score=36.64 Aligned_cols=21 Identities=29% Similarity=0.272 Sum_probs=8.9
Q ss_pred HHHhhhhhHHHHHHHHHHHhh
Q 005903 384 SLYGAESRAESAEEKVTQLTD 404 (670)
Q Consensus 384 ~l~rAEsRa~tAesKleeLSe 404 (670)
.-..||++....+..++.||.
T Consensus 61 ~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 39
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.95 E-value=20 Score=37.62 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhH
Q 005903 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (670)
Q Consensus 376 rrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (670)
++..+|..+|.+++.....++.+-.-...|..-|..-+..-.+++ ..|+..||+++++.+.+|+.+.+-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666665555555556555555444333332 25889999999999888888776544
No 40
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.94 E-value=15 Score=33.06 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=12.3
Q ss_pred hHHHHHhHHHHHHHHHHHHH
Q 005903 367 SQEQLNEMDNFIESLKESLY 386 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~ 386 (670)
+..++..|.|.|+.|.-++.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEID 53 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665554
No 41
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.68 E-value=7.9 Score=32.49 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=42.2
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHH
Q 005903 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (670)
Q Consensus 519 ~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (670)
-.+-++|..|+++++.+..-.+.....|..|.+.|..+|..+..+++.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999988888765
No 42
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=69.44 E-value=20 Score=30.90 Aligned_cols=55 Identities=15% Similarity=0.296 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHHHHHhh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGA 388 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKE~l~rA 388 (670)
+.+..|++-+...|.||-.+.-.|.+|....+.- .+.|++++..|.+||..+..+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999988777552 668999999999999887654
No 43
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.34 E-value=46 Score=28.58 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHH
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (670)
.+.++.|.++++.-+..|....+.++.++..++.+...
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888777766554
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.74 E-value=28 Score=32.32 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhh
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsR 391 (670)
.|...+..+++++-.+..+|..++.+++....++..+.+.|..|..++-+.|+.
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555566666666666666666666666666666665543
No 45
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=64.59 E-value=24 Score=31.46 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHHHHHhhhh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKE~l~rAEs 390 (670)
+.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|.+||..+..+-.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999999999999988777552 66899999999999988866543
No 46
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=63.82 E-value=16 Score=40.49 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=7.3
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 005903 462 IWDMETLIEDLKSKVSKAESKTESVEEQC 490 (670)
Q Consensus 462 isdme~vIEdLk~Kl~rAE~RaEsaEsKc 490 (670)
..+++.-.+.|+.++..|....+.+..+.
T Consensus 428 ~~~~~~e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 428 VELKDSETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp --------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566655555544444443
No 47
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=63.04 E-value=7.1 Score=35.40 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=48.8
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh--hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 005903 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKES 353 (670)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--~~~Lekl~~s~esEv~sLqkKvksLE~qLdes 353 (670)
+.||-+-+.+-++-+|-.++.-...=..-+-||++++.+-+.- +.....+.. +.++|..|+.|+..|..++.+.
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~-R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQN-RRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544444344567999999988864 333334444 5789999999988888887664
No 48
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.97 E-value=26 Score=31.70 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=9.0
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 005903 368 QEQLNEMDNFIESLKESLY 386 (670)
Q Consensus 368 E~EVaaLerrIelLKE~l~ 386 (670)
..++..+.|.|+.|.-++.
T Consensus 37 k~Ei~elrr~iq~L~~el~ 55 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQ 55 (131)
T ss_dssp ----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655543
No 49
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=62.68 E-value=65 Score=29.38 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=50.6
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 005903 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (670)
Q Consensus 468 vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~ 547 (670)
.|.+|+..|.-||+-...-...|- +|.+|+.-.+..+...+.--.++.--+.-+-.+=..|- +++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~id-------elk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadRE--------kl~ 89 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLV 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHH--------HHH
Confidence 466777777777777666667777 77777777766555554444455555555555544443 345
Q ss_pred HHHHHHHHHHhhhHHhh
Q 005903 548 TQRELIQKQVYSLTSEN 564 (670)
Q Consensus 548 ~ErdrLedQL~s~keen 564 (670)
.+.++|..|+..+...|
T Consensus 90 ~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55666666666555444
No 50
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.81 E-value=79 Score=26.70 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 005903 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (670)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (670)
...++.|.++++.-+..|....+.++.++..++...
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888888777766543
No 51
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.36 E-value=1e+02 Score=27.61 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdE 408 (670)
.+|+..+...++.|+-+++....+-......+.+. ..++..++..|..|+..+.++....+.-...+..|-..-.-
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888876655533333333222 44677777888888877777666555555555544444333
Q ss_pred HH
Q 005903 409 LS 410 (670)
Q Consensus 409 Le 410 (670)
|.
T Consensus 115 Ld 116 (129)
T 3tnu_B 115 LD 116 (129)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 52
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=57.43 E-value=11 Score=41.91 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=0.4
Q ss_pred HHHHHHHHHHhhhhhHH
Q 005903 377 FIESLKESLYGAESRAE 393 (670)
Q Consensus 377 rIelLKE~l~rAEsRa~ 393 (670)
++.+|.++..+||.-+.
T Consensus 364 ~~~~l~e~~~~~~~e~~ 380 (575)
T 2i1j_A 364 MILRLEEQLRQLQAAKE 380 (575)
T ss_dssp C----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 53
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=57.29 E-value=40 Score=30.85 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh------------HHHHHhHHHHHHHHHHHHHhhhh
Q 005903 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (670)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKE~l~rAEs 390 (670)
.+..|++-+...|.||-.+.-.|..|....|.- .+.|++++..|.+||..+..+-.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999888777542 66889999999999988765543
No 54
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.90 E-value=98 Score=27.90 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdE 408 (670)
.+|+..+...++.|+-+++....+-......+.+. ..++..++..|..|+..+.++....+.-...+..|-..-.-
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888887766544433322222222 34667777777777777776666555555555555444333
Q ss_pred HH
Q 005903 409 LS 410 (670)
Q Consensus 409 Le 410 (670)
|.
T Consensus 117 Ld 118 (131)
T 3tnu_A 117 LE 118 (131)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 55
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=56.68 E-value=13 Score=32.17 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005903 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (670)
Q Consensus 378 IelLKE~l~rAEsRa~tAesKleeLSeTNdELere--lkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (670)
|+.|.+++..-|..+.+|..|++.++++..---.+ ...+..|. .=+..|+..|.+.+-||..+++
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~----~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999998876433222 23455553 3578889999988877776665
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.51 E-value=1.7e+02 Score=30.55 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHH
Q 005903 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (670)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~ 505 (670)
....|.+||-+++.-+.++++-|..... +| -++.+-|-.|++.++.|.+..|..+. +||.+|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 460 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATANH-------TV---MALMASLDAEKAQGQKKVEELEGEIT-------TLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcch-------hH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 4667778888887777776655554443 12 13334444777778877666666666 5666555
Q ss_pred HHHhhHHH
Q 005903 506 FMRDKIKI 513 (670)
Q Consensus 506 ~l~~~lKs 513 (670)
..+..++.
T Consensus 461 ~~~~~~~~ 468 (471)
T 3mq9_A 461 DASAEVER 468 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 57
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=55.70 E-value=4.4 Score=30.18 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~akl 364 (670)
+++.++.+|++.|+.++|.+++++..++..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788888888888888888777776654
No 58
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.62 E-value=40 Score=29.19 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=45.9
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHH
Q 005903 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (670)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~s 517 (670)
.++|.-+.--|++||.|-......++.+-+....|...|..|.+|......|+.+|=.+
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777788888888777666666666666778888889999999999888877433
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.52 E-value=1.3e+02 Score=27.72 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 005903 339 MKEKVKSLEEQLKESEIRLQNAN 361 (670)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ 361 (670)
.+.....|+.+|..+++-|..+.
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~e 45 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777666665554
No 60
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=53.64 E-value=2.8e+02 Score=31.17 Aligned_cols=265 Identities=8% Similarity=0.074 Sum_probs=127.8
Q ss_pred hHHhHHHHHHHHHhhhhccccee------ccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 005903 108 ELREVERLLDTIHVEIVNVHHKI------SSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (670)
Q Consensus 108 Ev~ele~~~~~lq~~I~~~~~~~------~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~ 181 (670)
|+..++..+.+|+..+....... +.+..+...+-.+ +....+.+..|.....+...+-....+|++....+
T Consensus 306 e~~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L---~~~~~~r~~~l~~~~~R~~~Le~l~~~F~~~~~~~ 382 (863)
T 1sjj_A 306 EKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGL---EQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIH 382 (863)
T ss_dssp HHHHHHHTTTHHHHHTTTTSSCCCCCSTTSCGGGHHHHHHHH---HHHHTTTHHHHHHHHEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677776665433321 1222223322222 33333333433332222222223457788887777
Q ss_pred ccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHH
Q 005903 182 IHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEA 261 (670)
Q Consensus 182 ~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla~eldLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~ 261 (670)
..|-.+....+.. ..+++ ..+.++..+..-...++..|+. .+..+.......++|...=|+.. ..+..-
T Consensus 383 ~~Wl~~~e~~l~~-~~~g~----~dl~~v~~ll~kh~~f~~el~~---~~~~v~~l~~~~~~L~~~~~~~~---~~I~~~ 451 (863)
T 1sjj_A 383 ESWTDGKEAMLQQ-KDYET----ATLSEIKALLKKHEAFESDLAA---HQDRVEQIAAIAQELNELDYYDS---PSVNAR 451 (863)
T ss_dssp HHHHHHHHHHHHS-CTTTS----SCHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTCCTTH---HHHHHH
T ss_pred HHHHHHHHHHhhc-ccccC----CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCcccH---HHHHHH
Confidence 7776655544443 22322 1234444444445666666654 34555555556666654333322 233444
Q ss_pred HHHHHHHHHhccchHHHHhhhhHHHHhhhh---HH--hhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHH
Q 005903 262 AEVVWGRFLEAENSAEVLMGISKEMLGRFQ---IV--QFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEV 336 (670)
Q Consensus 262 ~~~~~er~~EAENa~EvL~g~skel~gkLq---~~--qf~L~as~~REsel~sKL~~~~eqL~~k~~~Lekl~~s~esEv 336 (670)
...+..||-.=-.+++-=+..+...+..++ .. ||.-.+ .++.+=+...++.|...+. ....+++
T Consensus 452 ~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a-----~~~~~Wl~~~e~~l~~~~~------g~dl~~v 520 (863)
T 1sjj_A 452 CQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRA-----APFNNWMEGAMEDLQDTFI------VHTIEEI 520 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTTHHHHHHHHHHHHCCCC------CSSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcchHh------hccHHHH
Confidence 444555553322222222222222222222 11 333222 2344455555555543221 1245779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---hhHhhh---------------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 005903 337 LTMKEKVKSLEEQLKESEIRLQNAN---ACFQTS---------------QEQLNEMDNFIESLKESLYGAESRAESAEE 397 (670)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~---aklEes---------------E~EVaaLerrIelLKE~l~rAEsRa~tAes 397 (670)
..|.+|...++.++......+.... ..+... ...+..+..+-+.|.+-+..=..|++.+..
T Consensus 521 e~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~ 599 (863)
T 1sjj_A 521 QGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHA 599 (863)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765543322 222110 113456666667776666666666666653
No 61
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=52.38 E-value=15 Score=33.65 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhh
Q 005903 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (670)
Q Consensus 378 IelLKE~l~rAEsRa~tAesKleeLSeTNdELere--lkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (670)
|++|.+++..-|..+.+|..|+..++++..---.+ .+.+..|. .=|..|+..|.+.+-||..++++
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~----~~Vs~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDRE----GVAVSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998876433222 23456653 35788999999998888777763
No 62
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.41 E-value=1.5e+02 Score=26.96 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE 368 (670)
.|+.++..||..-|+++-+--.+.++++..+
T Consensus 53 ~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 53 QLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 3444444444444444444444444433333
No 63
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=50.22 E-value=18 Score=32.36 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005903 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (670)
Q Consensus 377 rIelLKE~l~rAEsRa~tAesKleeLSeTNdELere--lkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (670)
-|+.|.+++..-|..+.+|..|+..++++..---.+ ...+..|. .=|..|+..|.+.+-||..+++
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~----~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999998876433222 23456653 3578899999988877777766
No 64
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=49.91 E-value=54 Score=26.20 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=20.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 005903 367 SQEQLNEMDNFIESLKESLYGAESRAES 394 (670)
Q Consensus 367 sE~EVaaLerrIelLKE~l~rAEsRa~t 394 (670)
..++|.++..-|+-.|++..||=.|+++
T Consensus 23 LssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 23 ASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3345666666777888888888888764
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=46.46 E-value=1.7e+02 Score=26.66 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=34.7
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 005903 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL 357 (670)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL 357 (670)
.+|+.+|..+++.|..+.....+|... ..-...-.+.|.-|+.|.+-|..--
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~e-i~q~~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999888777777664 2222222246666777777666553
No 66
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=44.98 E-value=1.5e+02 Score=25.36 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005903 462 IWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (670)
Q Consensus 462 isdme~vIEdLk~Kl~rAE~RaEsaEsKc~ 491 (670)
+..+..=+..|+.++.+.+....-.|.++.
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~ 45 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454555555555555555444444444
No 67
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=44.90 E-value=1e+02 Score=26.40 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhHHhhHHHHHHHhhccC
Q 005903 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGK 576 (670)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd~T~k 576 (670)
=.+-.+||.|+|-++.-+|+.|.+++..++.
T Consensus 44 k~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 44 KNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3477899999999999999999999987754
No 68
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=44.05 E-value=2.2e+02 Score=28.90 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=42.7
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 005903 99 DLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (670)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~ 178 (670)
.+|++|||.=|.....+++.|..+|...+..+..... +..-.++..+|++...|.|.+
T Consensus 156 ~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~----------------------~~~l~~l~~lrr~l~~lrr~l 213 (339)
T 4ev6_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD----------------------REVMEKILGLRKTLVYFHKSL 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC----------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------------------hhHHHHHHHHHHHHHHHHHHh
Confidence 4788999988888888888888888777766654332 122345667777777777777
Q ss_pred hh
Q 005903 179 SY 180 (670)
Q Consensus 179 ~~ 180 (670)
.+
T Consensus 214 ~~ 215 (339)
T 4ev6_A 214 IA 215 (339)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 69
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.26 E-value=58 Score=28.49 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=30.5
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005903 329 ESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (670)
Q Consensus 329 ~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeL 402 (670)
|++++..+..|+.+..+||+++.+++.+.... ++.++..|..|+.++.++....+.-...+..|
T Consensus 7 ~~~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e----------~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 7 HSSRENLYFQGQKESRACLERIQELEDLLAKE----------KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888765433 34455555555555554444333333333333
No 70
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.40 E-value=1.2e+02 Score=23.56 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHH
Q 005903 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l 385 (670)
+..++.++...+..++.....+..++.++....+.+......|..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555455555555555555555544455555555555544443
No 71
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.16 E-value=52 Score=27.88 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=37.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHhhc
Q 005903 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (670)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~T 574 (670)
-+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.+++...
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36678888889999999998888888888888888888888888764
No 72
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=41.23 E-value=4e+02 Score=29.37 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=42.4
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhhHHHHHHHHHHHH-------------HHHHHHhccchHHHHhhhhHHHHhhhhHHhh
Q 005903 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEV-------------VWGRFLEAENSAEVLMGISKEMLGRFQIVQF 295 (670)
Q Consensus 229 dLEkkL~~s~~~eeeLk~kL~~~eqe~~~lEE~~~~-------------~~er~~EAENa~EvL~g~skel~gkLq~~qf 295 (670)
||||.|.--..+|.|..-||.+-..-+-.||.-|.. -..|-++|--.+.-|.||=+|+.+||..+-.
T Consensus 358 dlekslrkrehlekev~kkle~~~~nkn~meakaqansqkd~ifalin~ea~kearAtal~kNfsgIrkELsdKleN~Nn 437 (569)
T 4dvz_A 358 DLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISK 437 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhhccccchHHHHhhhhhhhhHHHHHhhhhhHHhHHHHHHHHhhhhc
Confidence 555555554445555555555444444445543322 2245567777888899999999999999888
Q ss_pred hcc
Q 005903 296 NLN 298 (670)
Q Consensus 296 ~L~ 298 (670)
+++
T Consensus 438 Nln 440 (569)
T 4dvz_A 438 DLK 440 (569)
T ss_dssp HHH
T ss_pred cch
Confidence 885
No 73
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.17 E-value=2.4e+02 Score=30.98 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 005903 461 AIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (670)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaEsaEsKc 490 (670)
.|..+..+++.|+.|+.+-+........+|
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555566666666555555444333343
No 74
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.14 E-value=40 Score=33.30 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=17.1
Q ss_pred HHHHHhhhhHHHHHhhcC----------ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005903 314 FIEQLKAKDMVLQKLEST----------KNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (670)
Q Consensus 314 ~~eqL~~k~~~Lekl~~s----------~esEv~sLqkKvksLE~qLdes~eQL~ 358 (670)
..+||+..+...++|... ++.|+..|++++.+++.+.+.++.++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 344555555554444331 344555555555555555554444443
No 75
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.93 E-value=1.3e+02 Score=26.89 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHH----hh---------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKA----AS---------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke----~t---------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (670)
.|+-|-.-++.+...||..+....-+-+ .| +-.+..+ .+..+.+|+.|+++|...+..+
T Consensus 23 ~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~---~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 23 ELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR---LREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444545555555555665554221111 11 4444333 3478889999999988877654
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.85 E-value=90 Score=28.86 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhh
Q 005903 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (670)
Q Consensus 374 LerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (670)
-.+...+|+..+-+|..-+..++..-.--..|..-|..-|+..+.++ -.++.-|++.++..+.+|+.|-+
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~a 92 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASA 92 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666555555555555555555444443 24555566666666655555443
No 77
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.59 E-value=1.4e+02 Score=25.81 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 005903 391 RAESAEEKVTQLTDTNLELSEEINFLKGN 419 (670)
Q Consensus 391 Ra~tAesKleeLSeTNdELerelkvLesr 419 (670)
|+++=..|.--|++.|..|+.++..+.++
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555555555555555555443
No 78
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=36.21 E-value=2.5e+02 Score=25.54 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=32.7
Q ss_pred cccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHH
Q 005903 493 LSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (670)
Q Consensus 493 Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekL 571 (670)
+.+.+-+=.-++..+..++..-|..|...-+.=. .-..-+.+-+.+|...|+++..+|..+..+|-.|..+.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fs-------q~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLS-------QAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKH 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 3444444445555555555555544443322111 11234567788999999999999999999998887664
No 79
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.10 E-value=1.1e+02 Score=25.84 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 005903 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (670)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~ 393 (670)
|+..|-.++..||.++...+.++.+...-. ..-..++.+..++..++.++..+..|=.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~-~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFS-QPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777776543211 1235667777777777777777777754
No 80
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.07 E-value=1.3e+02 Score=23.78 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=34.2
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005903 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (670)
Q Consensus 519 ~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ke 562 (670)
.+.-++|..+..+++.+.+..+.--..|..++..|..++..++.
T Consensus 14 ~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 14 SRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888888888888888888888888877776653
No 81
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=35.83 E-value=2.1e+02 Score=29.31 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhh
Q 005903 59 KLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLRE 138 (670)
Q Consensus 59 Kl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~ 138 (670)
|..=||.++..+.....++-.+..+-. +|++|--.|+ .-|.+++..|.+=+..++.++..... ..+.+.
T Consensus 176 k~TLLh~lv~~~~~~~p~l~~f~~eL~-----~v~~Askvs~--~~l~~~l~~l~~~~~~~~~~l~~~~~----~~~~~d 244 (340)
T 1v9d_A 176 KMTLLHFLAELCENDHPEVLKFPDELA-----HVEKASRVSA--ENLQKSLDQMKKQIADVERDVQNFPA----ATDEKD 244 (340)
T ss_dssp TSBHHHHHHHHHHHSCCTTSSGGGGCT-----THHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHTCCC----CSSSSC
T ss_pred CccHHHHHHHHHHHhCchhccchhHHH-----hHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhccc----ccchhH
Confidence 444478888888777777766664433 3555554442 33567888888888888888765422 122344
Q ss_pred HHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 005903 139 VFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (670)
Q Consensus 139 ~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (670)
.|... |..-+.+++..+.+.+.+...+.. .|..+..+|.
T Consensus 245 ~f~~~--m~~Fl~~a~~~~~~l~~~~~~~~~---~~~~l~~yfg 283 (340)
T 1v9d_A 245 KFVEK--MTSFVKDAQEQYNKLRMMHSNMET---LYKELGDYFV 283 (340)
T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 56532 478889999988888888877754 5777777775
No 82
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.82 E-value=1.3e+02 Score=26.09 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (670)
-|+..|.-||..+|++--.|+-.|..+++.+-
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~ 57 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVA 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 57888999999999999888888888875443
No 83
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.70 E-value=1.5e+02 Score=25.12 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=21.8
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005903 325 LQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (670)
Q Consensus 325 Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A 360 (670)
.++|... +.+...|.++|+.+|.++..+...=...
T Consensus 6 ~~kLq~~-E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 6 HMKLQEV-EIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 5666677777777777777776543333
No 84
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.34 E-value=1e+02 Score=30.49 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=26.6
Q ss_pred hhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 005903 478 KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (670)
Q Consensus 478 rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q 523 (670)
.+++|.++++.=+.-|.-.|.-|+++|......++.|..++..+..
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788888888877788888888888777777777666555443
No 85
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=34.07 E-value=1.5e+02 Score=25.89 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHH
Q 005903 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L 567 (670)
+.++-|..+++.++.+|.-+...+...--|..++-.=-.-.=.+-.-|+..+..||.++-.+|+.|..+
T Consensus 16 ~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 16 QFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788888888887776654333334455544455555677789999999999999999999875
No 86
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.48 E-value=3.2e+02 Score=30.06 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=4.7
Q ss_pred HhhhHHhhHH
Q 005903 557 VYSLTSENKL 566 (670)
Q Consensus 557 L~s~keenK~ 566 (670)
|.++.+.|++
T Consensus 335 V~~E~~~Y~L 344 (464)
T 1m1j_B 335 IHNEGNKYQL 344 (464)
T ss_dssp ECCGGGTTCE
T ss_pred ECCcccceee
Confidence 3345555553
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.85 E-value=1.6e+02 Score=26.90 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhh
Q 005903 473 KSKVSKAESKTESVEEQCI 491 (670)
Q Consensus 473 k~Kl~rAE~RaEsaEsKc~ 491 (670)
+.++..+|.||...|.+..
T Consensus 91 q~~~~e~E~kAqa~Eerf~ 109 (120)
T 3i00_A 91 QRSLSEIERKAQANEQRYS 109 (120)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555556555555554
No 88
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.74 E-value=4e+02 Score=28.87 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHH
Q 005903 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (670)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE 515 (670)
.|+.+..+|+++..|..|-|.-.+..-.-|.+=-.-+++++=.+..|.+-.|.|+
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHH
Confidence 4666667777777777776666555555565333334444444666665555544
No 89
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=32.59 E-value=2.3e+02 Score=23.99 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=30.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005903 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (670)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (670)
-|+-+-.|.+..|..+.|+...+..|+.|+.++
T Consensus 46 ~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 46 AALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388899999999999999999999999999875
No 90
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=31.89 E-value=2.4e+02 Score=25.03 Aligned_cols=87 Identities=24% Similarity=0.257 Sum_probs=50.4
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 005903 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLAT 548 (670)
Q Consensus 469 IEdLk~Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ 548 (670)
|++|+..+.-||+-+-+-...|- +|.+++.-.+..+...+.--.++.--++-|-.|=..|- +++.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id-------~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadRE--------kl~~ 68 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHh
Confidence 45566666666655555555555 66666666666666555555566555666655555553 4556
Q ss_pred HHHHHHHHHhhhHHhhHHHHHH
Q 005903 549 QRELIQKQVYSLTSENKLLVEK 570 (670)
Q Consensus 549 ErdrLedQL~s~keenK~L~ek 570 (670)
+.++|..++..+...|..|+..
T Consensus 69 eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp TTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777776666554
No 91
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=31.84 E-value=1.5e+02 Score=26.37 Aligned_cols=78 Identities=24% Similarity=0.254 Sum_probs=47.3
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------hhHhhhHHHHHhHHHH
Q 005903 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN-------ACFQTSQEQLNEMDNF 377 (670)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~-------aklEesE~EVaaLerr 377 (670)
.+|..+|..+++-|..+...+++|.+. ..-.....+.+.-|..|.+-|..--..=. ..-+....+++.+.+.
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~-~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 378899999999999998888888875 33333444667777777777766543222 2222224455555555
Q ss_pred HHHHHH
Q 005903 378 IESLKE 383 (670)
Q Consensus 378 IelLKE 383 (670)
+..|+.
T Consensus 84 ~~~L~~ 89 (94)
T 3jsv_C 84 FNKLKV 89 (94)
T ss_dssp TC----
T ss_pred HHHHHH
Confidence 555544
No 92
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.46 E-value=84 Score=32.96 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHH
Q 005903 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (670)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~ 386 (670)
++|++.+.+++...+..+..+...+...+..+..++.+|+.|+.+|.
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555565555555555554444433334444444555555544443
No 93
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.46 E-value=2.6e+02 Score=24.23 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005903 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (670)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKl 399 (670)
+..+-+.+..|.-++++..++-.......++..+....+.+.++-|+++...=++|+..-..|.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555554444444455555566677777777777777777766655553
No 94
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=31.30 E-value=15 Score=27.36 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.3
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005903 369 EQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (670)
Q Consensus 369 ~EVaaLerrIelLKE~l~rAEsRa~tAesKl 399 (670)
+.+.++.++|+-|+.+.+.|+.|+..+..++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999998876554
No 95
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=30.72 E-value=2.7e+02 Score=25.54 Aligned_cols=53 Identities=8% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 005903 506 FMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (670)
Q Consensus 506 ~l~~~lKsLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~ 558 (670)
.+.++++.||+.++.....++.....-..-++.+.+.+.+...-...+..++.
T Consensus 6 ~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~ 58 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888877666666677777777766666555555543
No 96
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=30.71 E-value=1.5e+02 Score=23.28 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~ 384 (670)
++.+|+..||.-++..+..+..--+. ..+-..-|..||..|+..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 46788888998888888877766444 344445566777777654
No 97
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=30.69 E-value=2.4e+02 Score=25.77 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=41.4
Q ss_pred hHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 005903 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (670)
Q Consensus 406 NdELerelkvLesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE 480 (670)
+.|+..-.+.|++. +..+|-+|.+. +.|+.+++..-.+=+.--.++.+--.+|.+++.++...+
T Consensus 62 ~~E~~~~~~EL~~~-------l~sie~dLeDL----e~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 62 REELDWTTNELRNG-------LRSIEWDLEDL----EETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp -CHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555553 67788888775 588888887665222113468888888887777766544
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.72 E-value=2.6e+02 Score=23.80 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH
Q 005903 499 ELKNKQSFMRDKIKILESSLNR 520 (670)
Q Consensus 499 ELeEEL~~l~~~lKsLE~sl~k 520 (670)
+|......++++++.++..+..
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 99
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.98 E-value=1.9e+02 Score=32.60 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=14.6
Q ss_pred hhhhhHHHhHHHHhhhHHHH
Q 005903 225 ARELDLEKKISELNQNEEQL 244 (670)
Q Consensus 225 a~eldLEkkL~~s~~~eeeL 244 (670)
--+.||-+.|++.++..+++
T Consensus 57 kqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred hhcCcHHHHHHHHHHHHHHH
Confidence 34677777777777777777
No 100
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=27.07 E-value=1.9e+02 Score=22.94 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005903 348 EQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (670)
Q Consensus 348 ~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeL 402 (670)
..|+.....+...+.-.-..-.|+..-+..+..+..+++++..|+..+..++..+
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444577888889999999999999999999998887654
No 101
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=27.05 E-value=3.4e+02 Score=24.21 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhh----HH---HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005903 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (670)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~---EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeT 405 (670)
+.++..|+.++..+..+-.....++.++...++.. +. .-.++++-|..|+.+++.+--.-.. |..-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~d-------LE~~ 91 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLD-------LERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHH-------HHHH
Confidence 45666777777666555555555555444444332 22 3346666677777666544332222 3333
Q ss_pred hHHHHHHhhhhhc
Q 005903 406 NLELSEEINFLKG 418 (670)
Q Consensus 406 NdELerelkvLes 418 (670)
..-|.+++.||+.
T Consensus 92 iesL~eEl~FLKk 104 (119)
T 3ol1_A 92 VESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666777664
No 102
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.52 E-value=1.6e+02 Score=22.86 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=27.7
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHHHHh
Q 005903 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (670)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (670)
.|+-+++.|++-.+ .....|+..|+++..+|.+|-+.++
T Consensus 3 aYl~eLE~r~k~le-------~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLE-------NKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 47777877766544 4455566778888888888877665
No 103
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.44 E-value=3e+02 Score=23.38 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005903 338 TMKEKVKSLEEQLKESEIRL 357 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL 357 (670)
.|.++...++..++..+.++
T Consensus 74 ~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 104
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.42 E-value=4e+02 Score=30.06 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005903 534 HRTKLMMEMVMQLATQRELIQKQVYSL 560 (670)
Q Consensus 534 ~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (670)
.+..+....|..+-.++.|||..|..-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666667778888877654
No 105
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.64 E-value=1.9e+02 Score=22.98 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=30.7
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005903 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (670)
Q Consensus 518 l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (670)
..+.-++|-.+..+++.+.+..+.-...|..++..|..++..++
T Consensus 13 A~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 13 ASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777778888877777777777777777777777666554
No 106
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.56 E-value=2.1e+02 Score=24.36 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHh
Q 005903 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (670)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~r 387 (670)
.|+..|..-.++|..-..-.++.+.++...+..|+.|..++++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333444444444455555555555443
No 107
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.50 E-value=1e+02 Score=32.83 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=13.1
Q ss_pred CccchhhhchHhhhhhhhh
Q 005903 600 NLAGATVKTSEDAVSLMKS 618 (670)
Q Consensus 600 ~~~~~~~k~~~~~~~~~~~ 618 (670)
+++.-.+.+.+|++.++..
T Consensus 236 ~l~~~~v~s~~e~~~ll~~ 254 (403)
T 4etp_A 236 NVTSVKLESEEMVEIILKK 254 (403)
T ss_dssp TCCCEECCCHHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHH
Confidence 4566667777888777653
No 108
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.26 E-value=3.6e+02 Score=23.98 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=5.6
Q ss_pred HHHHhhhhhhhhhh
Q 005903 469 IEDLKSKVSKAESK 482 (670)
Q Consensus 469 IEdLk~Kl~rAE~R 482 (670)
+..|+.++.+...+
T Consensus 28 ~~~L~~~l~eE~~~ 41 (97)
T 2eqb_B 28 VKRLREDIAKENEL 41 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 109
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=25.00 E-value=2.2e+02 Score=29.85 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccc--cchhhHH
Q 005903 63 LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSC--KHLREVF 140 (670)
Q Consensus 63 L~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~--~~~~~~f 140 (670)
||.++..+.....++-.+..+- .+|++|--.|+ .-|.++|++|.+=+..++.++.... ++.+ .|.+..|
T Consensus 261 Lh~l~~~v~~~~p~l~~f~~eL-----~~v~~Aakv~~--~~l~~d~~~L~~~l~~v~~~l~~~~--~s~~~~~~~~d~f 331 (411)
T 1ux5_A 261 LNYVEKIVRLNYPSFNDFLSEL-----EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERSVEIGN--LSDSSKFHPLDKV 331 (411)
T ss_dssp HHHHHHHHHHHCGGGGGHHHHT-----HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHHHHHST--TTCTTSSCTTCCH
T ss_pred HHHHHHHHHHhCcccccccchh-----hhHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHhcc--CCcccccCcccHH
Confidence 7777777777766666554432 34556544332 3456889999999999998886422 2221 1333445
Q ss_pred HHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 005903 141 TIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (670)
Q Consensus 141 ~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (670)
.. .|..-+.+++..+...++++..+.. .|.++..+|.
T Consensus 332 ~~--~~~~fl~~a~~~~~~l~~~~~~~~~---~~~~l~~yfg 368 (411)
T 1ux5_A 332 LI--KTLPVLPEARKKGDLLEDEVKLTIM---EFESLMHTYG 368 (411)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 53 2367788888888888887776654 6777777775
No 110
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.90 E-value=2e+02 Score=24.70 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=21.1
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005903 324 VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (670)
Q Consensus 324 ~Lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A 360 (670)
..++|... +.+...|.++|..+|.++..+...=..+
T Consensus 11 ~~~klq~~-E~rN~~Le~~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 11 TQQKVQDL-ETRNAELEHQLRAMERSLEEARAERERA 46 (79)
T ss_dssp TTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 4566667777777777777666544333
No 111
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.63 E-value=3.1e+02 Score=22.96 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=9.0
Q ss_pred HHHHHHHhHHHHHhhhhHHHH
Q 005903 306 ELKSKLGDFIEQLKAKDMVLQ 326 (670)
Q Consensus 306 el~sKL~~~~eqL~~k~~~Le 326 (670)
.+..++.....++..-+.+++
T Consensus 19 ~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 19 AISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333
No 112
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.41 E-value=2.9e+02 Score=22.52 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005903 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (670)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeT 405 (670)
.|++.+|.++.+.-.....+-++...+-..+......+-...=.+..|..|..+....+..+...
T Consensus 4 ~ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r 68 (73)
T 3htk_B 4 QKIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNER 68 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 46666666666666666666555555555666665555555556666666666666666555443
No 113
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.16 E-value=61 Score=23.57 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005903 541 EMVMQLATQRELIQKQVY 558 (670)
Q Consensus 541 ~lV~KL~~ErdrLedQL~ 558 (670)
-.|++|++.+|||++-+.
T Consensus 13 ~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 13 AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 468899999999998653
No 114
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.11 E-value=1.7e+02 Score=23.14 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=23.9
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 005903 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563 (670)
Q Consensus 518 l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~kee 563 (670)
....-.+|-.|+.+++.+ |.+|..+-..|..++..+...
T Consensus 13 A~rSR~RKk~~~~~LE~~-------v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 13 ARESRRKKKEYVKSLENR-------VAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888887776 445555655665555555443
No 115
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.84 E-value=87 Score=29.38 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHH
Q 005903 377 FIESLKESLYGAESRAESAEEKVTQ 401 (670)
Q Consensus 377 rIelLKE~l~rAEsRa~tAesKlee 401 (670)
.+..|..++.+...+-..|+..+..
T Consensus 47 e~~~L~~~l~eE~~~R~~aE~~~~~ 71 (135)
T 2e7s_A 47 EVKRLREDIAKENELRTKAEEEADK 71 (135)
T ss_dssp HHHTHHHHHHHTTSHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 116
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.76 E-value=2.2e+02 Score=25.66 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 005903 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (670)
Q Consensus 372 aaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELerelkvLes 418 (670)
+++-=.|..||+.+..-|+-.....-.+.+.+.-...+.+....|..
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~ 72 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQF 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666655555555544444444444444444444433
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.66 E-value=76 Score=25.16 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=24.1
Q ss_pred hhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHH
Q 005903 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (670)
Q Consensus 483 aEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE~s 517 (670)
.+..|.++..|+..|.+|..++..++..+..|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777888888888888877776543
No 118
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=23.15 E-value=4.9e+02 Score=24.70 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=47.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhh
Q 005903 330 STKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAE 389 (670)
Q Consensus 330 ~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAE 389 (670)
+.++..+..|+.-+.++-+++++.++.|.-+..-+.+-+..|-.|..|...-.-++.+-.
T Consensus 7 E~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lr 66 (167)
T 4gkw_A 7 EDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLR 66 (167)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHH
Confidence 336788899999999999999999999888877777777777777777777666665543
No 119
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=22.83 E-value=2.2e+02 Score=23.70 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 005903 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (670)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeT 405 (670)
|+.....+...+.-.-..-.||..-+..|..+..+++++..|+..+..++..+.+.
T Consensus 21 Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 21 LELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344567888889999999999999999999999998877654
No 120
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.26 E-value=2.3e+02 Score=24.64 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=23.9
Q ss_pred hhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHH
Q 005903 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (670)
Q Consensus 475 Kl~rAE~RaEsaEsKc~~Lse~N~ELeEEL~~l~~~lKsLE 515 (670)
..-.+++++.-+|.++- +|..|+..++.+++.|.
T Consensus 39 ~ni~~eskL~eae~rn~-------eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 39 DNQNFASQLREAEARNR-------DLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33344555555566666 99999999999888764
No 121
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.46 E-value=82 Score=23.76 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhHHhhHHHHH
Q 005903 544 MQLATQRELIQKQVYSLTSENKLLVE 569 (670)
Q Consensus 544 ~KL~~ErdrLedQL~s~keenK~L~e 569 (670)
-||-++++.=..+|.+++++|..|.+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 47888888889999999999988753
No 122
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.94 E-value=3.2e+02 Score=26.90 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHhhh
Q 005903 339 MKEKVKSLEEQLKESEIRLQNANACFQTS 367 (670)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEes 367 (670)
++..+..++.++...+.++..+++.++.+
T Consensus 67 ~~~~~~~~~a~l~~~~a~l~~a~~~~~~a 95 (341)
T 3fpp_A 67 AENQIKEVEATLMELRAQRQQAEAELKLA 95 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666665555444
No 123
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.88 E-value=3.5e+02 Score=26.90 Aligned_cols=26 Identities=8% Similarity=0.229 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHhh
Q 005903 341 EKVKSLEEQLKESEIRLQNANACFQT 366 (670)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEe 366 (670)
..+...+.++...+.++..+++.++.
T Consensus 70 ~~l~~~~a~l~~~~a~l~~a~~~~~~ 95 (369)
T 4dk0_A 70 NTLNTRKAALASYQAQLVARKTAYDV 95 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544443
No 124
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.73 E-value=2.6e+02 Score=23.91 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l 385 (670)
++.+||..||.-++..+..+..--+..+. -..-|.+||..|+..+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~s---sQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYES---MQQKLKQRLTKVEKFL 48 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 57789999999998888887776555433 3344555666555544
No 125
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.39 E-value=3.6e+02 Score=22.82 Aligned_cols=60 Identities=10% Similarity=0.204 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 005903 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (670)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLS 403 (670)
.|+.+|+....+||..+.+++.+... ++..++..|..++.++.++....+.-......|-
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~----------~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLAR----------ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL 62 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666677776666654322 3445555566666555555444443333444333
No 126
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=20.29 E-value=4e+02 Score=22.58 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 005903 339 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (670)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeL 402 (670)
|++++..+..+.++...++..+...+.....+-..|......++..+..=..--.+|.-||++.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~~LK~QAVNKLAEI 65 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEI 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777655554433333444445555555554444445666666654
No 127
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=20.22 E-value=6.5e+02 Score=25.39 Aligned_cols=62 Identities=16% Similarity=0.314 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 005903 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (670)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKl 399 (670)
+-..++.++|-++++-+.++..+...+-.-+..+..-++.|..|+-++.-.+.|...++++.
T Consensus 81 dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~I 142 (242)
T 3c9i_A 81 DHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNI 142 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccch
Confidence 33456666666666666666655554443333344444444444444444444444444433
No 128
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.20 E-value=4.8e+02 Score=28.13 Aligned_cols=9 Identities=11% Similarity=0.062 Sum_probs=4.1
Q ss_pred hhhHHhhHH
Q 005903 558 YSLTSENKL 566 (670)
Q Consensus 558 ~s~keenK~ 566 (670)
.++.+.|++
T Consensus 268 ~~E~~~Y~L 276 (409)
T 1m1j_C 268 GTEEDKYRL 276 (409)
T ss_dssp CCTTTTTCE
T ss_pred cCccCCeEE
Confidence 344444544
No 129
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.06 E-value=3.1e+02 Score=27.30 Aligned_cols=10 Identities=10% Similarity=-0.124 Sum_probs=6.0
Q ss_pred ccCCCCceec
Q 005903 574 SGKSSSATMY 583 (670)
Q Consensus 574 T~k~~~~tm~ 583 (670)
+..-+|+.++
T Consensus 155 ~~i~AP~~G~ 164 (369)
T 4dk0_A 155 TKITSPIDGT 164 (369)
T ss_dssp SSCCCSCCSC
T ss_pred CEEECCCCeE
Confidence 4456777654
No 130
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.02 E-value=3.9e+02 Score=22.39 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 005903 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (670)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE~l~rAEsRa~tAesKleeLSeTNdELere 412 (670)
|+.++.....+||..+.+++.+... ++..++..|..++.++.++....+.-......|-..-.-|+-+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~----------~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~E 69 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAV----------EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIE 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5667777777888887777766543 3445555666666666655555444444444444443333333
Done!